AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341570 MtrunA17_Chr7g0275821 93.701 254 16 0 325 578 171 424 2.46e-154 449
Msa1341570 MtrunA17_Chr7g0275821 91.758 182 10 2 1 177 1 182 5.49e-109 333
Msa1341570 MtrunA17_Chr7g0260841 36.348 575 267 21 10 566 9 502 8.94e-98 306
Msa1341570 MtrunA17_Chr5g0411341 41.704 223 105 5 372 572 458 677 3.62e-42 161
Msa1341570 MtrunA17_Chr5g0411341 27.119 236 154 3 8 239 3 224 3.88e-21 97.8
Msa1341570 MtrunA17_Chr8g0366751 42.365 203 85 5 388 565 444 639 1.96e-40 155
Msa1341570 MtrunA17_Chr8g0366751 31.944 216 115 9 48 252 52 246 9.69e-18 87.0
Msa1341570 MtrunA17_Chr8g0346161 38.372 172 97 1 386 548 271 442 1.56e-33 133
Msa1341570 MtrunA17_Chr8g0346151 37.566 189 104 4 386 561 259 446 5.91e-31 125
Msa1341570 MtrunA17_Chr5g0400661 30.058 173 98 2 382 532 125 296 1.60e-18 87.0
Msa1341570 MtrunA17_Chr5g0411331 30.049 203 124 4 42 240 20 208 1.94e-18 85.5
Msa1341570 MtrunA17_Chr1g0185621 26.368 201 124 6 50 240 7 193 3.11e-18 88.6
Msa1341570 MtrunA17_Chr1g0185621 46.512 86 44 2 390 473 458 543 6.88e-14 74.7
Msa1341570 MtrunA17_Chr4g0054571 37.097 124 57 2 406 511 150 270 2.70e-17 83.6
Msa1341570 MtrunA17_Chr2g0280161 30.147 136 86 1 406 532 177 312 1.55e-16 81.3
Msa1341570 MtrunA17_Chr5g0400671 37.302 126 68 4 393 513 145 264 1.88e-16 80.9
Msa1341570 MtrunA17_Chr4g0033391 31.515 165 103 3 393 551 137 297 3.89e-16 79.7
Msa1341570 MtrunA17_Chr5g0400621 28.108 185 122 4 389 564 142 324 4.53e-16 79.7
Msa1341570 MtrunA17_Chr4g0049331 57.627 59 25 0 404 462 133 191 5.18e-16 79.3
Msa1341570 MtrunA17_Chr2g0333621 33.333 153 74 4 384 508 97 249 6.04e-16 79.0
Msa1341570 MtrunA17_Chr5g0400641 28.947 152 88 2 410 547 2 147 3.67e-15 73.6
Msa1341570 MtrunA17_Chr8g0386921 30.978 184 104 7 65 238 17 187 4.18e-15 78.6
Msa1341570 MtrunA17_Chr8g0386921 52.308 65 31 0 402 466 402 466 1.23e-13 73.9
Msa1341570 MtrunA17_Chr2g0307141 32.298 161 97 4 399 551 180 336 1.10e-14 75.9
Msa1341570 MtrunA17_Chr7g0225901 32.143 168 98 6 383 541 71 231 1.39e-14 73.9
Msa1341570 MtrunA17_Chr4g0054621 29.651 172 107 4 387 553 157 319 2.88e-14 74.3
Msa1341570 MtrunA17_Chr6g0468461 34.532 139 76 4 328 463 104 230 2.98e-14 74.3
Msa1341570 MtrunA17_Chr4g0033281 49.333 75 34 1 387 461 138 208 3.31e-14 73.9
Msa1341570 MtrunA17_Chr2g0307131 32.143 168 101 4 392 551 170 332 4.30e-14 73.9
Msa1341570 MtrunA17_Chr4g0054581 51.429 70 28 2 392 461 190 253 5.81e-14 73.9
Msa1341570 MtrunA17_Chr2g0320291 31.333 150 97 3 410 553 137 286 6.31e-14 73.2
Msa1341570 MtrunA17_Chr3g0131691 52.239 67 32 0 404 470 296 362 9.14e-14 73.9
Msa1341570 MtrunA17_Chr4g0054561 35.897 117 66 3 395 506 148 260 9.20e-14 72.8
Msa1341570 MtrunA17_Chr4g0028071 30.588 170 105 5 396 553 140 308 1.30e-13 72.4
Msa1341570 MtrunA17_Chr2g0298751 58.182 55 23 0 407 461 53 107 1.39e-13 70.9
Msa1341570 MtrunA17_Chr1g0211081 41.053 95 52 2 369 463 284 374 1.66e-13 73.2
Msa1341570 MtrunA17_Chr4g0033291 49.333 75 34 1 387 461 140 210 2.68e-13 71.2
Msa1341570 MtrunA17_Chr6g0468491 26.423 246 158 7 313 547 53 286 3.39e-13 70.9
Msa1341570 MtrunA17_Chr4g0002781 26.702 191 106 5 333 508 116 287 3.57e-13 71.2
Msa1341570 MtrunA17_Chr7g0252041 54.098 61 28 0 404 464 284 344 4.46e-13 71.6
Msa1341570 MtrunA17_Chr2g0333641 33.071 127 70 3 392 508 124 245 5.35e-13 70.1
Msa1341570 MtrunA17_Chr4g0002801 23.762 202 139 3 380 566 126 327 1.73e-12 68.9
Msa1341570 MtrunA17_Chr2g0287761 26.404 178 108 3 405 560 1 177 1.75e-12 66.6
Msa1341570 MtrunA17_Chr2g0333611 25.000 168 119 3 407 567 46 213 5.87e-12 65.5
Msa1341570 MtrunA17_Chr4g0054551 46.154 65 31 1 395 459 148 208 1.87e-11 65.9
Msa1341570 MtrunA17_Chr7g0249811 25.806 186 121 4 385 561 143 320 8.80e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341570 AT1G01260.1 48.052 616 248 15 4 577 3 588 3.46e-175 509
Msa1341570 AT1G01260.2 48.052 616 248 15 4 577 3 588 3.46e-175 509
Msa1341570 AT1G01260.3 48.052 616 248 15 4 577 3 588 3.46e-175 509
Msa1341570 AT2G46510.1 47.368 589 241 16 9 572 8 552 1.73e-163 478
Msa1341570 AT4G17880.1 32.914 556 301 17 48 565 61 582 1.79e-72 243
Msa1341570 AT4G16430.1 49.730 185 74 3 385 566 299 467 1.68e-53 189
Msa1341570 AT4G16430.1 37.500 240 120 6 10 240 8 226 9.47e-37 143
Msa1341570 AT5G46760.1 44.444 216 106 5 361 564 371 584 2.36e-45 169
Msa1341570 AT1G32640.1 44.211 190 90 3 387 564 433 618 1.02e-38 151
Msa1341570 AT1G32640.1 32.828 198 117 4 48 240 66 252 7.15e-20 94.0
Msa1341570 AT5G46830.1 30.080 502 272 18 67 548 49 491 6.11e-37 144
Msa1341570 AT5G57150.1 33.645 214 111 8 386 578 40 243 3.83e-20 90.5
Msa1341570 AT5G57150.5 33.889 180 96 6 386 548 40 213 8.42e-19 85.9
Msa1341570 AT5G57150.3 33.889 180 96 6 386 548 41 214 1.49e-18 85.1
Msa1341570 AT5G57150.4 33.889 180 96 6 386 548 41 214 1.53e-18 86.3
Msa1341570 AT5G57150.2 33.889 180 96 6 386 548 41 214 1.68e-18 85.1
Msa1341570 AT4G00870.1 37.500 136 74 1 405 529 248 383 2.74e-18 87.8
Msa1341570 AT4G09820.1 28.194 227 145 5 36 253 2 219 2.93e-18 88.6
Msa1341570 AT4G09820.1 34.351 131 55 3 382 508 350 453 6.10e-16 81.3
Msa1341570 AT4G37850.2 28.194 227 123 5 358 556 98 312 3.20e-18 86.7
Msa1341570 AT4G37850.1 28.194 227 123 5 358 556 98 312 3.20e-18 86.7
Msa1341570 AT5G41315.3 29.167 216 127 4 41 240 6 211 1.93e-16 83.2
Msa1341570 AT5G41315.3 48.571 70 36 0 400 469 440 509 9.85e-14 74.7
Msa1341570 AT5G41315.1 29.167 216 127 4 41 240 1 206 1.93e-16 83.2
Msa1341570 AT5G41315.1 48.571 70 36 0 400 469 435 504 9.62e-14 74.7
Msa1341570 AT5G41315.2 29.167 216 127 4 41 240 9 214 2.14e-16 83.2
Msa1341570 AT5G41315.2 48.571 70 36 0 400 469 443 512 9.89e-14 74.7
Msa1341570 AT1G63650.3 29.148 223 128 8 41 247 1 209 7.06e-16 81.3
Msa1341570 AT1G63650.3 48.529 68 35 0 402 469 401 468 1.65e-13 73.9
Msa1341570 AT1G63650.1 29.148 223 128 8 41 247 1 209 7.06e-16 81.3
Msa1341570 AT1G63650.1 48.529 68 35 0 402 469 401 468 1.65e-13 73.9
Msa1341570 AT1G63650.2 29.148 223 128 8 41 247 1 209 7.06e-16 81.3
Msa1341570 AT1G63650.2 48.529 68 35 0 402 469 401 468 1.65e-13 73.9
Msa1341570 AT4G29930.5 31.757 148 94 3 390 536 43 184 1.69e-14 73.9
Msa1341570 AT4G29930.2 29.091 165 110 3 390 553 43 201 1.76e-14 73.6
Msa1341570 AT2G22750.4 32.911 158 89 3 388 532 140 293 3.47e-14 74.3
Msa1341570 AT2G22750.3 32.911 158 89 3 388 532 140 293 3.60e-14 74.3
Msa1341570 AT2G22750.2 32.911 158 89 3 388 532 112 265 3.65e-14 73.9
Msa1341570 AT1G12860.2 53.731 67 31 0 404 470 265 331 3.75e-14 75.1
Msa1341570 AT2G22750.5 32.911 158 89 3 388 532 136 289 3.80e-14 74.3
Msa1341570 AT2G22750.1 32.911 158 89 3 388 532 112 265 3.85e-14 73.9
Msa1341570 AT1G12860.1 53.731 67 31 0 404 470 265 331 4.23e-14 75.1
Msa1341570 AT4G00480.3 30.151 199 104 8 67 243 36 221 6.78e-14 74.7
Msa1341570 AT4G29930.6 28.144 167 112 4 390 553 43 204 7.23e-14 71.6
Msa1341570 AT4G00480.1 30.151 199 104 8 67 243 36 221 8.85e-14 74.7
Msa1341570 AT2G16910.1 33.728 169 73 5 410 546 318 479 1.02e-13 74.3
Msa1341570 AT4G00480.2 30.151 199 104 8 67 243 36 221 1.31e-13 74.3
Msa1341570 AT3G26744.6 55.738 61 27 0 404 464 305 365 2.47e-13 72.8
Msa1341570 AT4G29930.4 48.611 72 32 1 390 461 43 109 2.55e-13 69.3
Msa1341570 AT3G26744.1 55.738 61 27 0 404 464 305 365 2.70e-13 72.8
Msa1341570 AT3G26744.4 55.738 61 27 0 404 464 305 365 2.70e-13 72.8
Msa1341570 AT3G26744.2 55.738 61 27 0 404 464 305 365 2.70e-13 72.8
Msa1341570 AT4G29930.3 48.611 72 32 1 390 461 43 109 3.10e-13 70.5
Msa1341570 AT4G29930.7 48.611 72 32 1 390 461 43 109 3.10e-13 70.5
Msa1341570 AT4G29930.1 48.611 72 32 1 390 461 43 109 3.87e-13 70.1
Msa1341570 AT2G22760.2 33.628 113 64 2 407 508 120 232 4.84e-13 70.5
Msa1341570 AT2G22760.1 33.628 113 64 2 407 508 120 232 5.64e-13 70.5
Msa1341570 AT2G22770.1 50.000 66 30 1 400 462 123 188 5.45e-12 67.8
Msa1341570 AT2G28160.2 45.312 64 35 0 410 473 135 198 5.99e-12 67.4
Msa1341570 AT2G28160.1 45.312 64 35 0 410 473 135 198 6.43e-12 67.4
Msa1341570 AT5G65640.1 29.747 158 100 3 403 554 175 327 5.72e-11 64.7

Find 108 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATTCAACACAACTTT+TGG 0.177209 tig0004829:+116939 None:intergenic
ATTGGAATTACGCAATTTAT+TGG 0.206579 tig0004829:-117550 Msa1341570:CDS
CTGACTTAATTACAAAATTA+TGG 0.220746 tig0004829:+116121 None:intergenic
TTATTGCTTTCGTTCTTTCT+TGG 0.223221 tig0004829:-117171 Msa1341570:CDS
TGCGTAATTCCAATTGAAAT+TGG 0.241887 tig0004829:+117559 None:intergenic
ATGCCTATATGGACAAAGTT+TGG 0.244044 tig0004829:+116028 None:intergenic
TTCAACAAATCAAAGATTTC+AGG 0.251699 tig0004829:+117068 None:intergenic
CCGGGTCCACCATACCCTTT+TGG 0.264704 tig0004829:+117242 None:intergenic
CTCTATTTATCATGCCTATA+TGG 0.268867 tig0004829:+116017 None:intergenic
CAGAAGTTGCATAAAGCTTT+TGG 0.288502 tig0004829:-117353 Msa1341570:CDS
GAAACTTGCCATTAGGAAAA+TGG 0.290252 tig0004829:-116892 Msa1341570:CDS
GATGAAGACAATTACGCTTT+TGG 0.306225 tig0004829:-117323 Msa1341570:CDS
TCTGCCTCCACATGATTTAG+AGG 0.320999 tig0004829:+116537 None:intergenic
GATCAATAAAGCGCATGATA+TGG 0.340119 tig0004829:-117742 Msa1341570:CDS
ACCATGGTTGGAGCTATTCT+TGG 0.347843 tig0004829:-117704 Msa1341570:CDS
TGCCTATATGGACAAAGTTT+GGG 0.350641 tig0004829:+116029 None:intergenic
ATTCTTCATCCAATTTCAAT+TGG 0.357065 tig0004829:-117568 Msa1341570:CDS
ACCAGAAGCAAAACACTTAC+CGG 0.359802 tig0004829:+117223 None:intergenic
TTGTCCATCTTGGAAATATT+CGG 0.360963 tig0004829:+116459 None:intergenic
TTAGGGAGAAACTTGCCATT+AGG 0.364646 tig0004829:-116899 Msa1341570:CDS
GGACAAAGTTTGGGTTTGTA+AGG 0.367197 tig0004829:+116038 None:intergenic
AATAACCGGTCTCGCAGAAT+TGG 0.375253 tig0004829:+116659 None:intergenic
CGACTTTCTAAGTCAAAATC+TGG 0.375807 tig0004829:-117527 Msa1341570:CDS
ACTCCACCTTCTTCTTCGTT+TGG 0.377124 tig0004829:+117464 None:intergenic
CTGGTGATTACGTTCTTTGT+TGG 0.387307 tig0004829:-117508 Msa1341570:CDS
TGCATTGGCATCTGCCTTTG+TGG 0.387976 tig0004829:+116711 None:intergenic
TATTCTTGGTGCTCGAGCTT+TGG 0.402534 tig0004829:-117690 Msa1341570:CDS
CATTTGGAAGCAGTACTTCC+AGG 0.403231 tig0004829:-116356 Msa1341570:CDS
GTTTCGATTAGTTTCGAAAC+AGG 0.406082 tig0004829:+116207 None:intergenic
ATTCGGTACAACAGCTCTTA+AGG 0.408610 tig0004829:+116476 None:intergenic
ATGGTATTTGTGGTTCTACT+TGG 0.409907 tig0004829:-116821 Msa1341570:CDS
AACTTTCCTAGTGCTAGAAA+TGG 0.411288 tig0004829:-116840 Msa1341570:CDS
TCTTTCTTGGCTAAATCTGC+TGG 0.412934 tig0004829:-117158 Msa1341570:CDS
CGCGGAAGGAAGCCTGCTAA+TGG 0.414504 tig0004829:-116570 Msa1341570:CDS
TGGTGATTACGTTCTTTGTT+GGG 0.415145 tig0004829:-117507 Msa1341570:CDS
TAAAGATGCCTTGTCCATCT+TGG 0.422075 tig0004829:+116449 None:intergenic
TGAAACAAAGTATGAAGAAG+TGG 0.425466 tig0004829:-117382 Msa1341570:CDS
TGCTTCTAATGGTGTGAGAA+AGG 0.436502 tig0004829:-116769 Msa1341570:CDS
AGTTTGGGTTTGTAAGGAGT+TGG 0.441750 tig0004829:+116044 None:intergenic
TTGCTTCTGGTAAACATTTG+TGG 0.442625 tig0004829:-117211 Msa1341570:CDS
GAATACTAGAGTTTCTCTTC+CGG 0.446637 tig0004829:-116295 Msa1341570:CDS
TTGTAAGGAGTTGGATTCTC+GGG 0.450320 tig0004829:+116053 None:intergenic
GAGTCAGAGAGAGAATCATT+TGG 0.451334 tig0004829:-116372 Msa1341570:CDS
ATGGACAAGGCATCTTTACT+TGG 0.451417 tig0004829:-116444 Msa1341570:CDS
TAGAGTTTCTCTTCCGGATG+TGG 0.452720 tig0004829:-116289 Msa1341570:CDS
GGTTCGTCCCTTCCATTAGC+AGG 0.455729 tig0004829:+116558 None:intergenic
GGCTTCCTTCCGCGCTTCCT+AGG 0.458293 tig0004829:+116579 None:intergenic
TGGTATTTGTGGTTCTACTT+GGG 0.461524 tig0004829:-116820 Msa1341570:CDS
TACGTTCTTTGTTGGGCAGA+TGG 0.462040 tig0004829:-117500 Msa1341570:CDS
AGTGCTAGAAATGGTATTTG+TGG 0.472584 tig0004829:-116831 Msa1341570:CDS
TTTGTAAGGAGTTGGATTCT+CGG 0.473242 tig0004829:+116052 None:intergenic
CTTTCTTCATTGACCACACT+AGG 0.491428 tig0004829:+116987 None:intergenic
GAAGAAAGTACAGTTTCAAA+TGG 0.494078 tig0004829:-116972 Msa1341570:CDS
TGCTGCAATCAACTTGTCCT+TGG 0.495738 tig0004829:+116080 None:intergenic
AATGATAATGATTGTGTGGC+AGG 0.499914 tig0004829:+117014 None:intergenic
TCAAGCGAAACTCAAGATCA+TGG 0.503060 tig0004829:-116394 Msa1341570:CDS
ACGTTCTTTGTTGGGCAGAT+GGG 0.511903 tig0004829:-117499 Msa1341570:CDS
AGTACTTCCAGGGATGGATC+AGG 0.512089 tig0004829:-116345 Msa1341570:CDS
GAGGGCCAATTCTGCGAGAC+CGG 0.516559 tig0004829:-116664 Msa1341570:CDS
TCAAGATGAGGTAATAGTAA+AGG 0.517416 tig0004829:-116253 Msa1341570:CDS
AACCCAAACTTTGTCCATAT+AGG 0.517452 tig0004829:-116031 None:intergenic
GGTATTTGTGGTTCTACTTG+GGG 0.519442 tig0004829:-116819 Msa1341570:CDS
CGAGTTGCCTGATCCATCCC+TGG 0.522358 tig0004829:+116338 None:intergenic
CCGGAAAAGTCAATTTGCAT+TGG 0.525652 tig0004829:+116696 None:intergenic
GAGACCGGTTATTGCTGAAT+CGG 0.527481 tig0004829:-116649 Msa1341570:CDS
TTGGCATCTGCCTTTGTGGT+TGG 0.531676 tig0004829:+116715 None:intergenic
ATTGGCCCTCGAATTTGCTC+CGG 0.532064 tig0004829:+116677 None:intergenic
AGTTCCGATTCAGCAATAAC+CGG 0.536707 tig0004829:+116645 None:intergenic
CCAAAAGGGTATGGTGGACC+CGG 0.545307 tig0004829:-117242 Msa1341570:CDS
GGAAGCAGTACTTCCAGGGA+TGG 0.552030 tig0004829:-116351 Msa1341570:CDS
TGTACCGAATATTTCCAAGA+TGG 0.552909 tig0004829:-116463 Msa1341570:CDS
GAAGCTTGAATATCCACATC+CGG 0.553300 tig0004829:+116276 None:intergenic
ATGTGGAGGCAGAGAGGCAA+AGG 0.553319 tig0004829:-116527 Msa1341570:CDS
CCAGAAGCAAAACACTTACC+GGG 0.554206 tig0004829:+117224 None:intergenic
GAAGAAGAGAAAACCATGGT+TGG 0.555055 tig0004829:-117716 Msa1341570:CDS
GAAACAAAGTATGAAGAAGT+GGG 0.558139 tig0004829:-117381 Msa1341570:CDS
TCTACTTGGGGAGTGAATCA+AGG 0.559151 tig0004829:-116807 Msa1341570:CDS
GAAGGAAGCCTGCTAATGGA+AGG 0.564326 tig0004829:-116566 Msa1341570:CDS
ATTTGGAAGCAGTACTTCCA+GGG 0.565753 tig0004829:-116355 Msa1341570:CDS
CTGATCAACCTAGCGATGAA+AGG 0.566880 tig0004829:-116605 Msa1341570:CDS
AACTGTTTATCAAATGAGAG+TGG 0.571748 tig0004829:-117653 Msa1341570:CDS
TCTGAGTCTTCGCATAGAAG+AGG 0.573258 tig0004829:-117432 Msa1341570:CDS
CAAATACCATTTCTAGCACT+AGG 0.582823 tig0004829:+116834 None:intergenic
GGAGACCTAGGAAGCGCGGA+AGG 0.585153 tig0004829:-116584 Msa1341570:CDS
GAGAGTGGATTGATTGCTGT+TGG 0.590794 tig0004829:-117638 Msa1341570:CDS
CTGTGTCGGTTACACGGTCA+AGG 0.590950 tig0004829:+117300 None:intergenic
ACTAATCGAAACATTCAAAG+AGG 0.592504 tig0004829:-116196 Msa1341570:CDS
ACATCTCTGTGTCGGTTACA+CGG 0.595335 tig0004829:+117294 None:intergenic
AGAGAACCAAACGAAGAAGA+AGG 0.608578 tig0004829:-117470 Msa1341570:CDS
ACCAAGAATAGCTCCAACCA+TGG 0.609004 tig0004829:+117703 None:intergenic
ATTATCATTGTATCCTAGTG+TGG 0.610408 tig0004829:-117000 Msa1341570:CDS
GGAACTTGTTGCTGATGTTG+AGG 0.613094 tig0004829:-116628 Msa1341570:CDS
GAACCAAACGAAGAAGAAGG+TGG 0.613103 tig0004829:-117467 Msa1341570:CDS
CTAGCGATGAAAGGAGACCT+AGG 0.617300 tig0004829:-116596 Msa1341570:CDS
TATTCAAGCTTCTCAAGATG+AGG 0.619645 tig0004829:-116265 Msa1341570:CDS
TCAACAACACCAAAATCAGT+AGG 0.632462 tig0004829:+117113 None:intergenic
TGGGGAGTGAATCAAGGTCA+AGG 0.636279 tig0004829:-116801 Msa1341570:CDS
GTTGTGTTGAATTTGAACAA+TGG 0.637607 tig0004829:-116933 Msa1341570:CDS
GGACGAACCTCTAAATCATG+TGG 0.640327 tig0004829:-116544 Msa1341570:CDS
AAGGAAGCCTGCTAATGGAA+GGG 0.640978 tig0004829:-116565 Msa1341570:CDS
GAAAGGAGACCTAGGAAGCG+CGG 0.657593 tig0004829:-116588 Msa1341570:CDS
GAATATTTCCAAGATGGACA+AGG 0.676800 tig0004829:-116457 Msa1341570:CDS
ATACAATGATAATGATTGTG+TGG 0.679020 tig0004829:+117010 None:intergenic
TAAATCATGTGGAGGCAGAG+AGG 0.679660 tig0004829:-116533 Msa1341570:CDS
CGAACCTCTAAATCATGTGG+AGG 0.682050 tig0004829:-116541 Msa1341570:CDS
AGGATCTGAACAGCTTACCA+AGG 0.700634 tig0004829:-116097 Msa1341570:CDS
ATAGCAACTACCAACCACAA+AGG 0.712491 tig0004829:-116725 Msa1341570:CDS
GAATGAAGAAGAGAAAACCA+TGG 0.720626 tig0004829:-117720 Msa1341570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTGACTTAATTACAAAATTA+TGG + tig0004829:117660-117679 None:intergenic 20.0%
!!! AATTTTGTAATTAAGTCAGA+AGG - tig0004829:117661-117680 Msa1341570:CDS 20.0%
!! CTGACTTAATTACAAAATTA+TGG + tig0004829:117660-117679 None:intergenic 20.0%
!!! AATTTTGTAATTAAGTCAGA+AGG - tig0004829:117661-117680 Msa1341570:CDS 20.0%
! ATTCTTCATCCAATTTCAAT+TGG - tig0004829:116210-116229 Msa1341570:CDS 25.0%
! ATTGGAATTACGCAATTTAT+TGG - tig0004829:116228-116247 Msa1341570:CDS 25.0%
! TTCAACAAATCAAAGATTTC+AGG + tig0004829:116713-116732 None:intergenic 25.0%
!! ATACAATGATAATGATTGTG+TGG + tig0004829:116771-116790 None:intergenic 25.0%
!! TTCAAATTCAACACAACTTT+TGG + tig0004829:116842-116861 None:intergenic 25.0%
!! ATTACTATCCATTTTCCTAA+TGG + tig0004829:116897-116916 None:intergenic 25.0%
! ATTCTTCATCCAATTTCAAT+TGG - tig0004829:116210-116229 Msa1341570:CDS 25.0%
! ATTGGAATTACGCAATTTAT+TGG - tig0004829:116228-116247 Msa1341570:CDS 25.0%
! TTCAACAAATCAAAGATTTC+AGG + tig0004829:116713-116732 None:intergenic 25.0%
!! ATACAATGATAATGATTGTG+TGG + tig0004829:116771-116790 None:intergenic 25.0%
!! TTCAAATTCAACACAACTTT+TGG + tig0004829:116842-116861 None:intergenic 25.0%
!! ATTACTATCCATTTTCCTAA+TGG + tig0004829:116897-116916 None:intergenic 25.0%
AACTGTTTATCAAATGAGAG+TGG - tig0004829:116125-116144 Msa1341570:CDS 30.0%
TGCGTAATTCCAATTGAAAT+TGG + tig0004829:116222-116241 None:intergenic 30.0%
AAAGAAGAAGAAGAAGAAGA+AGG - tig0004829:116371-116390 Msa1341570:CDS 30.0%
TGAAACAAAGTATGAAGAAG+TGG - tig0004829:116396-116415 Msa1341570:CDS 30.0%
GAAACAAAGTATGAAGAAGT+GGG - tig0004829:116397-116416 Msa1341570:CDS 30.0%
TAAAAAGAACATCTCTGTGT+CGG + tig0004829:116495-116514 None:intergenic 30.0%
! ATGTACTTCTTTTTCCCAAA+AGG - tig0004829:116521-116540 Msa1341570:CDS 30.0%
! TGTACTTCTTTTTCCCAAAA+GGG - tig0004829:116522-116541 Msa1341570:CDS 30.0%
TTATTGCTTTCGTTCTTTCT+TGG - tig0004829:116607-116626 Msa1341570:CDS 30.0%
!!! GTTTTAGTACCTACTGATTT+TGG - tig0004829:116656-116675 Msa1341570:CDS 30.0%
ATTATCATTGTATCCTAGTG+TGG - tig0004829:116778-116797 Msa1341570:CDS 30.0%
! GAAGAAAGTACAGTTTCAAA+TGG - tig0004829:116806-116825 Msa1341570:CDS 30.0%
GTTGTGTTGAATTTGAACAA+TGG - tig0004829:116845-116864 Msa1341570:CDS 30.0%
!!! GGTGAATTTTTTGCTTCTAA+TGG - tig0004829:116998-117017 Msa1341570:CDS 30.0%
TTGTCCATCTTGGAAATATT+CGG + tig0004829:117322-117341 None:intergenic 30.0%
TCAAGATGAGGTAATAGTAA+AGG - tig0004829:117525-117544 Msa1341570:CDS 30.0%
ACTAATCGAAACATTCAAAG+AGG - tig0004829:117582-117601 Msa1341570:CDS 30.0%
AACTGTTTATCAAATGAGAG+TGG - tig0004829:116125-116144 Msa1341570:CDS 30.0%
TGCGTAATTCCAATTGAAAT+TGG + tig0004829:116222-116241 None:intergenic 30.0%
AAAGAAGAAGAAGAAGAAGA+AGG - tig0004829:116371-116390 Msa1341570:CDS 30.0%
TGAAACAAAGTATGAAGAAG+TGG - tig0004829:116396-116415 Msa1341570:CDS 30.0%
GAAACAAAGTATGAAGAAGT+GGG - tig0004829:116397-116416 Msa1341570:CDS 30.0%
TAAAAAGAACATCTCTGTGT+CGG + tig0004829:116495-116514 None:intergenic 30.0%
! ATGTACTTCTTTTTCCCAAA+AGG - tig0004829:116521-116540 Msa1341570:CDS 30.0%
! TGTACTTCTTTTTCCCAAAA+GGG - tig0004829:116522-116541 Msa1341570:CDS 30.0%
TTATTGCTTTCGTTCTTTCT+TGG - tig0004829:116607-116626 Msa1341570:CDS 30.0%
!!! GTTTTAGTACCTACTGATTT+TGG - tig0004829:116656-116675 Msa1341570:CDS 30.0%
ATTATCATTGTATCCTAGTG+TGG - tig0004829:116778-116797 Msa1341570:CDS 30.0%
! GAAGAAAGTACAGTTTCAAA+TGG - tig0004829:116806-116825 Msa1341570:CDS 30.0%
GTTGTGTTGAATTTGAACAA+TGG - tig0004829:116845-116864 Msa1341570:CDS 30.0%
!!! GGTGAATTTTTTGCTTCTAA+TGG - tig0004829:116998-117017 Msa1341570:CDS 30.0%
TTGTCCATCTTGGAAATATT+CGG + tig0004829:117322-117341 None:intergenic 30.0%
TCAAGATGAGGTAATAGTAA+AGG - tig0004829:117525-117544 Msa1341570:CDS 30.0%
ACTAATCGAAACATTCAAAG+AGG - tig0004829:117582-117601 Msa1341570:CDS 30.0%
GATCAATAAAGCGCATGATA+TGG - tig0004829:116036-116055 Msa1341570:CDS 35.0%
GAATGAAGAAGAGAAAACCA+TGG - tig0004829:116058-116077 Msa1341570:CDS 35.0%
CGACTTTCTAAGTCAAAATC+TGG - tig0004829:116251-116270 Msa1341570:CDS 35.0%
TGGTGATTACGTTCTTTGTT+GGG - tig0004829:116271-116290 Msa1341570:CDS 35.0%
! CAGAAGTTGCATAAAGCTTT+TGG - tig0004829:116425-116444 Msa1341570:CDS 35.0%
! AAGTTGCATAAAGCTTTTGG+TGG - tig0004829:116428-116447 Msa1341570:CDS 35.0%
! GATGAAGACAATTACGCTTT+TGG - tig0004829:116455-116474 Msa1341570:CDS 35.0%
! TTCTTTTTCCCAAAAGGGTA+TGG - tig0004829:116527-116546 Msa1341570:CDS 35.0%
TTGCTTCTGGTAAACATTTG+TGG - tig0004829:116567-116586 Msa1341570:CDS 35.0%
TCAACAACACCAAAATCAGT+AGG + tig0004829:116668-116687 None:intergenic 35.0%
!!! TGATTTTGGTGTTGTTGAGT+TGG - tig0004829:116670-116689 Msa1341570:CDS 35.0%
!!! GATTTTGGTGTTGTTGAGTT+GGG - tig0004829:116671-116690 Msa1341570:CDS 35.0%
! AATGATAATGATTGTGTGGC+AGG + tig0004829:116767-116786 None:intergenic 35.0%
! ACAATGGTCGTACACATTTT+AGG - tig0004829:116861-116880 Msa1341570:CDS 35.0%
! CAATGGTCGTACACATTTTA+GGG - tig0004829:116862-116881 Msa1341570:CDS 35.0%
GAAACTTGCCATTAGGAAAA+TGG - tig0004829:116886-116905 Msa1341570:CDS 35.0%
AACTTTCCTAGTGCTAGAAA+TGG - tig0004829:116938-116957 Msa1341570:CDS 35.0%
!! CAAATACCATTTCTAGCACT+AGG + tig0004829:116947-116966 None:intergenic 35.0%
AGTGCTAGAAATGGTATTTG+TGG - tig0004829:116947-116966 Msa1341570:CDS 35.0%
! ATGGTATTTGTGGTTCTACT+TGG - tig0004829:116957-116976 Msa1341570:CDS 35.0%
! TGGTATTTGTGGTTCTACTT+GGG - tig0004829:116958-116977 Msa1341570:CDS 35.0%
! ATGGTGTGAGAAAGGATTTT+AGG - tig0004829:117017-117036 Msa1341570:CDS 35.0%
!! CCAATGCAAATTGACTTTTC+CGG - tig0004829:117082-117101 Msa1341570:CDS 35.0%
TGTACCGAATATTTCCAAGA+TGG - tig0004829:117315-117334 Msa1341570:CDS 35.0%
GAATATTTCCAAGATGGACA+AGG - tig0004829:117321-117340 Msa1341570:CDS 35.0%
GAATACTAGAGTTTCTCTTC+CGG - tig0004829:117483-117502 Msa1341570:CDS 35.0%
TATTCAAGCTTCTCAAGATG+AGG - tig0004829:117513-117532 Msa1341570:CDS 35.0%
!! GTTTCGATTAGTTTCGAAAC+AGG + tig0004829:117574-117593 None:intergenic 35.0%
TTTGTAAGGAGTTGGATTCT+CGG + tig0004829:117729-117748 None:intergenic 35.0%
GATCAATAAAGCGCATGATA+TGG - tig0004829:116036-116055 Msa1341570:CDS 35.0%
GAATGAAGAAGAGAAAACCA+TGG - tig0004829:116058-116077 Msa1341570:CDS 35.0%
CGACTTTCTAAGTCAAAATC+TGG - tig0004829:116251-116270 Msa1341570:CDS 35.0%
TGGTGATTACGTTCTTTGTT+GGG - tig0004829:116271-116290 Msa1341570:CDS 35.0%
! CAGAAGTTGCATAAAGCTTT+TGG - tig0004829:116425-116444 Msa1341570:CDS 35.0%
! AAGTTGCATAAAGCTTTTGG+TGG - tig0004829:116428-116447 Msa1341570:CDS 35.0%
! GATGAAGACAATTACGCTTT+TGG - tig0004829:116455-116474 Msa1341570:CDS 35.0%
! TTCTTTTTCCCAAAAGGGTA+TGG - tig0004829:116527-116546 Msa1341570:CDS 35.0%
TTGCTTCTGGTAAACATTTG+TGG - tig0004829:116567-116586 Msa1341570:CDS 35.0%
TCAACAACACCAAAATCAGT+AGG + tig0004829:116668-116687 None:intergenic 35.0%
!!! TGATTTTGGTGTTGTTGAGT+TGG - tig0004829:116670-116689 Msa1341570:CDS 35.0%
!!! GATTTTGGTGTTGTTGAGTT+GGG - tig0004829:116671-116690 Msa1341570:CDS 35.0%
! AATGATAATGATTGTGTGGC+AGG + tig0004829:116767-116786 None:intergenic 35.0%
! ACAATGGTCGTACACATTTT+AGG - tig0004829:116861-116880 Msa1341570:CDS 35.0%
! CAATGGTCGTACACATTTTA+GGG - tig0004829:116862-116881 Msa1341570:CDS 35.0%
GAAACTTGCCATTAGGAAAA+TGG - tig0004829:116886-116905 Msa1341570:CDS 35.0%
AACTTTCCTAGTGCTAGAAA+TGG - tig0004829:116938-116957 Msa1341570:CDS 35.0%
!! CAAATACCATTTCTAGCACT+AGG + tig0004829:116947-116966 None:intergenic 35.0%
AGTGCTAGAAATGGTATTTG+TGG - tig0004829:116947-116966 Msa1341570:CDS 35.0%
! ATGGTATTTGTGGTTCTACT+TGG - tig0004829:116957-116976 Msa1341570:CDS 35.0%
! TGGTATTTGTGGTTCTACTT+GGG - tig0004829:116958-116977 Msa1341570:CDS 35.0%
! ATGGTGTGAGAAAGGATTTT+AGG - tig0004829:117017-117036 Msa1341570:CDS 35.0%
!! CCAATGCAAATTGACTTTTC+CGG - tig0004829:117082-117101 Msa1341570:CDS 35.0%
TGTACCGAATATTTCCAAGA+TGG - tig0004829:117315-117334 Msa1341570:CDS 35.0%
GAATATTTCCAAGATGGACA+AGG - tig0004829:117321-117340 Msa1341570:CDS 35.0%
GAATACTAGAGTTTCTCTTC+CGG - tig0004829:117483-117502 Msa1341570:CDS 35.0%
TATTCAAGCTTCTCAAGATG+AGG - tig0004829:117513-117532 Msa1341570:CDS 35.0%
!! GTTTCGATTAGTTTCGAAAC+AGG + tig0004829:117574-117593 None:intergenic 35.0%
TTTGTAAGGAGTTGGATTCT+CGG + tig0004829:117729-117748 None:intergenic 35.0%
GAAGAAGAGAAAACCATGGT+TGG - tig0004829:116062-116081 Msa1341570:CDS 40.0%
CTGGTGATTACGTTCTTTGT+TGG - tig0004829:116270-116289 Msa1341570:CDS 40.0%
AGAGAACCAAACGAAGAAGA+AGG - tig0004829:116308-116327 Msa1341570:CDS 40.0%
!! TTTTTCCCAAAAGGGTATGG+TGG - tig0004829:116530-116549 Msa1341570:CDS 40.0%
ACCAGAAGCAAAACACTTAC+CGG + tig0004829:116558-116577 None:intergenic 40.0%
TCTTTCTTGGCTAAATCTGC+TGG - tig0004829:116620-116639 Msa1341570:CDS 40.0%
CTTTCTTCATTGACCACACT+AGG + tig0004829:116794-116813 None:intergenic 40.0%
TTAGGGAGAAACTTGCCATT+AGG - tig0004829:116879-116898 Msa1341570:CDS 40.0%
! GGTATTTGTGGTTCTACTTG+GGG - tig0004829:116959-116978 Msa1341570:CDS 40.0%
TGCTTCTAATGGTGTGAGAA+AGG - tig0004829:117009-117028 Msa1341570:CDS 40.0%
ATAGCAACTACCAACCACAA+AGG - tig0004829:117053-117072 Msa1341570:CDS 40.0%
CCGGAAAAGTCAATTTGCAT+TGG + tig0004829:117085-117104 None:intergenic 40.0%
AGTTCCGATTCAGCAATAAC+CGG + tig0004829:117136-117155 None:intergenic 40.0%
ATTCGGTACAACAGCTCTTA+AGG + tig0004829:117305-117324 None:intergenic 40.0%
TAAAGATGCCTTGTCCATCT+TGG + tig0004829:117332-117351 None:intergenic 40.0%
! ATGGACAAGGCATCTTTACT+TGG - tig0004829:117334-117353 Msa1341570:CDS 40.0%
TCAAGCGAAACTCAAGATCA+TGG - tig0004829:117384-117403 Msa1341570:CDS 40.0%
GAGTCAGAGAGAGAATCATT+TGG - tig0004829:117406-117425 Msa1341570:CDS 40.0%
ATTTGGAAGCAGTACTTCCA+GGG - tig0004829:117423-117442 Msa1341570:CDS 40.0%
GAAGCTTGAATATCCACATC+CGG + tig0004829:117505-117524 None:intergenic 40.0%
TTGTAAGGAGTTGGATTCTC+GGG + tig0004829:117728-117747 None:intergenic 40.0%
! AGTTTGGGTTTGTAAGGAGT+TGG + tig0004829:117737-117756 None:intergenic 40.0%
! GGACAAAGTTTGGGTTTGTA+AGG + tig0004829:117743-117762 None:intergenic 40.0%
GAAGAAGAGAAAACCATGGT+TGG - tig0004829:116062-116081 Msa1341570:CDS 40.0%
CTGGTGATTACGTTCTTTGT+TGG - tig0004829:116270-116289 Msa1341570:CDS 40.0%
AGAGAACCAAACGAAGAAGA+AGG - tig0004829:116308-116327 Msa1341570:CDS 40.0%
!! TTTTTCCCAAAAGGGTATGG+TGG - tig0004829:116530-116549 Msa1341570:CDS 40.0%
ACCAGAAGCAAAACACTTAC+CGG + tig0004829:116558-116577 None:intergenic 40.0%
TCTTTCTTGGCTAAATCTGC+TGG - tig0004829:116620-116639 Msa1341570:CDS 40.0%
CTTTCTTCATTGACCACACT+AGG + tig0004829:116794-116813 None:intergenic 40.0%
TTAGGGAGAAACTTGCCATT+AGG - tig0004829:116879-116898 Msa1341570:CDS 40.0%
! GGTATTTGTGGTTCTACTTG+GGG - tig0004829:116959-116978 Msa1341570:CDS 40.0%
TGCTTCTAATGGTGTGAGAA+AGG - tig0004829:117009-117028 Msa1341570:CDS 40.0%
ATAGCAACTACCAACCACAA+AGG - tig0004829:117053-117072 Msa1341570:CDS 40.0%
CCGGAAAAGTCAATTTGCAT+TGG + tig0004829:117085-117104 None:intergenic 40.0%
AGTTCCGATTCAGCAATAAC+CGG + tig0004829:117136-117155 None:intergenic 40.0%
ATTCGGTACAACAGCTCTTA+AGG + tig0004829:117305-117324 None:intergenic 40.0%
TAAAGATGCCTTGTCCATCT+TGG + tig0004829:117332-117351 None:intergenic 40.0%
! ATGGACAAGGCATCTTTACT+TGG - tig0004829:117334-117353 Msa1341570:CDS 40.0%
TCAAGCGAAACTCAAGATCA+TGG - tig0004829:117384-117403 Msa1341570:CDS 40.0%
GAGTCAGAGAGAGAATCATT+TGG - tig0004829:117406-117425 Msa1341570:CDS 40.0%
ATTTGGAAGCAGTACTTCCA+GGG - tig0004829:117423-117442 Msa1341570:CDS 40.0%
GAAGCTTGAATATCCACATC+CGG + tig0004829:117505-117524 None:intergenic 40.0%
TTGTAAGGAGTTGGATTCTC+GGG + tig0004829:117728-117747 None:intergenic 40.0%
! AGTTTGGGTTTGTAAGGAGT+TGG + tig0004829:117737-117756 None:intergenic 40.0%
! GGACAAAGTTTGGGTTTGTA+AGG + tig0004829:117743-117762 None:intergenic 40.0%
ACCATGGTTGGAGCTATTCT+TGG - tig0004829:116074-116093 Msa1341570:CDS 45.0%
ACCAAGAATAGCTCCAACCA+TGG + tig0004829:116078-116097 None:intergenic 45.0%
!! TATTCTTGGTGCTCGAGCTT+TGG - tig0004829:116088-116107 Msa1341570:CDS 45.0%
!! GAGAGTGGATTGATTGCTGT+TGG - tig0004829:116140-116159 Msa1341570:CDS 45.0%
TACGTTCTTTGTTGGGCAGA+TGG - tig0004829:116278-116297 Msa1341570:CDS 45.0%
ACGTTCTTTGTTGGGCAGAT+GGG - tig0004829:116279-116298 Msa1341570:CDS 45.0%
GAACCAAACGAAGAAGAAGG+TGG - tig0004829:116311-116330 Msa1341570:CDS 45.0%
ACTCCACCTTCTTCTTCGTT+TGG + tig0004829:116317-116336 None:intergenic 45.0%
TCTGAGTCTTCGCATAGAAG+AGG - tig0004829:116346-116365 Msa1341570:CDS 45.0%
!! ACATCTCTGTGTCGGTTACA+CGG + tig0004829:116487-116506 None:intergenic 45.0%
CCAGAAGCAAAACACTTACC+GGG + tig0004829:116557-116576 None:intergenic 45.0%
TCTACTTGGGGAGTGAATCA+AGG - tig0004829:116971-116990 Msa1341570:CDS 45.0%
! ACTTTTCCGGAGCAAATTCG+AGG - tig0004829:117095-117114 Msa1341570:CDS 45.0%
! CTTTTCCGGAGCAAATTCGA+GGG - tig0004829:117096-117115 Msa1341570:CDS 45.0%
AATAACCGGTCTCGCAGAAT+TGG + tig0004829:117122-117141 None:intergenic 45.0%
GAGACCGGTTATTGCTGAAT+CGG - tig0004829:117129-117148 Msa1341570:CDS 45.0%
!! GGAACTTGTTGCTGATGTTG+AGG - tig0004829:117150-117169 Msa1341570:CDS 45.0%
CTGATCAACCTAGCGATGAA+AGG - tig0004829:117173-117192 Msa1341570:CDS 45.0%
AAGGAAGCCTGCTAATGGAA+GGG - tig0004829:117213-117232 Msa1341570:CDS 45.0%
GGACGAACCTCTAAATCATG+TGG - tig0004829:117234-117253 Msa1341570:CDS 45.0%
CGAACCTCTAAATCATGTGG+AGG - tig0004829:117237-117256 Msa1341570:CDS 45.0%
TCTGCCTCCACATGATTTAG+AGG + tig0004829:117244-117263 None:intergenic 45.0%
TAAATCATGTGGAGGCAGAG+AGG - tig0004829:117245-117264 Msa1341570:CDS 45.0%
CATTTGGAAGCAGTACTTCC+AGG - tig0004829:117422-117441 Msa1341570:CDS 45.0%
TAGAGTTTCTCTTCCGGATG+TGG - tig0004829:117489-117508 Msa1341570:CDS 45.0%
AGGATCTGAACAGCTTACCA+AGG - tig0004829:117681-117700 Msa1341570:CDS 45.0%
TGCTGCAATCAACTTGTCCT+TGG + tig0004829:117701-117720 None:intergenic 45.0%
ACCATGGTTGGAGCTATTCT+TGG - tig0004829:116074-116093 Msa1341570:CDS 45.0%
ACCAAGAATAGCTCCAACCA+TGG + tig0004829:116078-116097 None:intergenic 45.0%
!! TATTCTTGGTGCTCGAGCTT+TGG - tig0004829:116088-116107 Msa1341570:CDS 45.0%
!! GAGAGTGGATTGATTGCTGT+TGG - tig0004829:116140-116159 Msa1341570:CDS 45.0%
TACGTTCTTTGTTGGGCAGA+TGG - tig0004829:116278-116297 Msa1341570:CDS 45.0%
ACGTTCTTTGTTGGGCAGAT+GGG - tig0004829:116279-116298 Msa1341570:CDS 45.0%
GAACCAAACGAAGAAGAAGG+TGG - tig0004829:116311-116330 Msa1341570:CDS 45.0%
ACTCCACCTTCTTCTTCGTT+TGG + tig0004829:116317-116336 None:intergenic 45.0%
TCTGAGTCTTCGCATAGAAG+AGG - tig0004829:116346-116365 Msa1341570:CDS 45.0%
!! ACATCTCTGTGTCGGTTACA+CGG + tig0004829:116487-116506 None:intergenic 45.0%
CCAGAAGCAAAACACTTACC+GGG + tig0004829:116557-116576 None:intergenic 45.0%
TCTACTTGGGGAGTGAATCA+AGG - tig0004829:116971-116990 Msa1341570:CDS 45.0%
! ACTTTTCCGGAGCAAATTCG+AGG - tig0004829:117095-117114 Msa1341570:CDS 45.0%
! CTTTTCCGGAGCAAATTCGA+GGG - tig0004829:117096-117115 Msa1341570:CDS 45.0%
AATAACCGGTCTCGCAGAAT+TGG + tig0004829:117122-117141 None:intergenic 45.0%
GAGACCGGTTATTGCTGAAT+CGG - tig0004829:117129-117148 Msa1341570:CDS 45.0%
!! GGAACTTGTTGCTGATGTTG+AGG - tig0004829:117150-117169 Msa1341570:CDS 45.0%
CTGATCAACCTAGCGATGAA+AGG - tig0004829:117173-117192 Msa1341570:CDS 45.0%
AAGGAAGCCTGCTAATGGAA+GGG - tig0004829:117213-117232 Msa1341570:CDS 45.0%
GGACGAACCTCTAAATCATG+TGG - tig0004829:117234-117253 Msa1341570:CDS 45.0%
CGAACCTCTAAATCATGTGG+AGG - tig0004829:117237-117256 Msa1341570:CDS 45.0%
TCTGCCTCCACATGATTTAG+AGG + tig0004829:117244-117263 None:intergenic 45.0%
TAAATCATGTGGAGGCAGAG+AGG - tig0004829:117245-117264 Msa1341570:CDS 45.0%
CATTTGGAAGCAGTACTTCC+AGG - tig0004829:117422-117441 Msa1341570:CDS 45.0%
TAGAGTTTCTCTTCCGGATG+TGG - tig0004829:117489-117508 Msa1341570:CDS 45.0%
AGGATCTGAACAGCTTACCA+AGG - tig0004829:117681-117700 Msa1341570:CDS 45.0%
TGCTGCAATCAACTTGTCCT+TGG + tig0004829:117701-117720 None:intergenic 45.0%
! CCCGGTAAGTGTTTTGCTTC+TGG - tig0004829:116554-116573 Msa1341570:CDS 50.0%
TGGGGAGTGAATCAAGGTCA+AGG - tig0004829:116977-116996 Msa1341570:CDS 50.0%
TTGGCATCTGCCTTTGTGGT+TGG + tig0004829:117066-117085 None:intergenic 50.0%
! TGCATTGGCATCTGCCTTTG+TGG + tig0004829:117070-117089 None:intergenic 50.0%
! ATTGGCCCTCGAATTTGCTC+CGG + tig0004829:117104-117123 None:intergenic 50.0%
CTAGGTCTCCTTTCATCGCT+AGG + tig0004829:117184-117203 None:intergenic 50.0%
CTAGCGATGAAAGGAGACCT+AGG - tig0004829:117182-117201 Msa1341570:CDS 50.0%
GAAGGAAGCCTGCTAATGGA+AGG - tig0004829:117212-117231 Msa1341570:CDS 50.0%
AGTACTTCCAGGGATGGATC+AGG - tig0004829:117433-117452 Msa1341570:CDS 50.0%
! CCCGGTAAGTGTTTTGCTTC+TGG - tig0004829:116554-116573 Msa1341570:CDS 50.0%
TGGGGAGTGAATCAAGGTCA+AGG - tig0004829:116977-116996 Msa1341570:CDS 50.0%
TTGGCATCTGCCTTTGTGGT+TGG + tig0004829:117066-117085 None:intergenic 50.0%
! TGCATTGGCATCTGCCTTTG+TGG + tig0004829:117070-117089 None:intergenic 50.0%
! ATTGGCCCTCGAATTTGCTC+CGG + tig0004829:117104-117123 None:intergenic 50.0%
CTAGGTCTCCTTTCATCGCT+AGG + tig0004829:117184-117203 None:intergenic 50.0%
CTAGCGATGAAAGGAGACCT+AGG - tig0004829:117182-117201 Msa1341570:CDS 50.0%
GAAGGAAGCCTGCTAATGGA+AGG - tig0004829:117212-117231 Msa1341570:CDS 50.0%
AGTACTTCCAGGGATGGATC+AGG - tig0004829:117433-117452 Msa1341570:CDS 50.0%
!! CTGTGTCGGTTACACGGTCA+AGG + tig0004829:116481-116500 None:intergenic 55.0%
! CGGGTCCACCATACCCTTTT+GGG + tig0004829:116538-116557 None:intergenic 55.0%
!! CCAAAAGGGTATGGTGGACC+CGG - tig0004829:116536-116555 Msa1341570:CDS 55.0%
GAAAGGAGACCTAGGAAGCG+CGG - tig0004829:117190-117209 Msa1341570:CDS 55.0%
GGTTCGTCCCTTCCATTAGC+AGG + tig0004829:117223-117242 None:intergenic 55.0%
ATGTGGAGGCAGAGAGGCAA+AGG - tig0004829:117251-117270 Msa1341570:CDS 55.0%
GGAAGCAGTACTTCCAGGGA+TGG - tig0004829:117427-117446 Msa1341570:CDS 55.0%
!! CTGTGTCGGTTACACGGTCA+AGG + tig0004829:116481-116500 None:intergenic 55.0%
! CGGGTCCACCATACCCTTTT+GGG + tig0004829:116538-116557 None:intergenic 55.0%
!! CCAAAAGGGTATGGTGGACC+CGG - tig0004829:116536-116555 Msa1341570:CDS 55.0%
GAAAGGAGACCTAGGAAGCG+CGG - tig0004829:117190-117209 Msa1341570:CDS 55.0%
GGTTCGTCCCTTCCATTAGC+AGG + tig0004829:117223-117242 None:intergenic 55.0%
ATGTGGAGGCAGAGAGGCAA+AGG - tig0004829:117251-117270 Msa1341570:CDS 55.0%
GGAAGCAGTACTTCCAGGGA+TGG - tig0004829:117427-117446 Msa1341570:CDS 55.0%
! CCGGGTCCACCATACCCTTT+TGG + tig0004829:116539-116558 None:intergenic 60.0%
GAGGGCCAATTCTGCGAGAC+CGG - tig0004829:117114-117133 Msa1341570:CDS 60.0%
CGCGGAAGGAAGCCTGCTAA+TGG - tig0004829:117208-117227 Msa1341570:CDS 60.0%
CGAGTTGCCTGATCCATCCC+TGG + tig0004829:117443-117462 None:intergenic 60.0%
! CCGGGTCCACCATACCCTTT+TGG + tig0004829:116539-116558 None:intergenic 60.0%
GAGGGCCAATTCTGCGAGAC+CGG - tig0004829:117114-117133 Msa1341570:CDS 60.0%
CGCGGAAGGAAGCCTGCTAA+TGG - tig0004829:117208-117227 Msa1341570:CDS 60.0%
CGAGTTGCCTGATCCATCCC+TGG + tig0004829:117443-117462 None:intergenic 60.0%
! GGAGACCTAGGAAGCGCGGA+AGG - tig0004829:117194-117213 Msa1341570:CDS 65.0%
GGCTTCCTTCCGCGCTTCCT+AGG + tig0004829:117202-117221 None:intergenic 65.0%
! GGAGACCTAGGAAGCGCGGA+AGG - tig0004829:117194-117213 Msa1341570:CDS 65.0%
GGCTTCCTTCCGCGCTTCCT+AGG + tig0004829:117202-117221 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0004829 gene 116032 117768 116032 ID=Msa1341570;Name=Msa1341570
tig0004829 mRNA 116032 117768 116032 ID=Msa1341570-mRNA-1;Parent=Msa1341570;Name=Msa1341570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|578
tig0004829 exon 116032 117768 116032 ID=Msa1341570-mRNA-1:exon:3238;Parent=Msa1341570-mRNA-1
tig0004829 CDS 116032 117768 116032 ID=Msa1341570-mRNA-1:cds;Parent=Msa1341570-mRNA-1
Gene Sequence

>Msa1341570

ATGGGATCAATAAAGCGCATGATATGGAATGAAGAAGAGAAAACCATGGTTGGAGCTATTCTTGGTGCTCGAGCTTTGGATTTTTTGATAAATAACTGTTTATCAAATGAGAGTGGATTGATTGCTGTTGGTGAAAGTGTTGATTCTCTTCAAAACAAACTCTCTGATCTTGTTGAAAATTCTTCATCCAATTTCAATTGGAATTACGCAATTTATTGGCGACTTTCTAAGTCAAAATCTGGTGATTACGTTCTTTGTTGGGCAGATGGGTGTTGCAGAGAACCAAACGAAGAAGAAGGTGGAGTTAGAGAAACTCTGAGTCTTCGCATAGAAGAGGAAAAAGAAGAAGAAGAAGAAGAAGGAATGAAACAAAGTATGAAGAAGTGGGTTTTGCAGAAGTTGCATAAAGCTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTCTTTTTAGCTTCTATGTACTTCTTTTTCCCAAAAGGGTATGGTGGACCCGGTAAGTGTTTTGCTTCTGGTAAACATTTGTGGTTCAAATCTGTTTCTGATTATTGCTTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACTGTTGTTTTAGTACCTACTGATTTTGGTGTTGTTGAGTTGGGTTCTGTTAGATTGTTACCTGAAATCTTTGATTTGTTGAACAAAATCAAATCATTGTTTTCAATTTCAAAACCTGCCACACAATCATTATCATTGTATCCTAGTGTGGTCAATGAAGAAAGTACAGTTTCAAATGGTGTTCAAGTTCCAAAAGTTGTGTTGAATTTGAACAATGGTCGTACACATTTTAGGGAGAAACTTGCCATTAGGAAAATGGATAGTAATAATGTTAATAATAATAGCATTAACTTTCCTAGTGCTAGAAATGGTATTTGTGGTTCTACTTGGGGAGTGAATCAAGGTCAAGGTGAATTTTTTGCTTCTAATGGTGTGAGAAAGGATTTTAGGCTCAACAACAATAATAGCAACTACCAACCACAAAGGCAGATGCCAATGCAAATTGACTTTTCCGGAGCAAATTCGAGGGCCAATTCTGCGAGACCGGTTATTGCTGAATCGGAACTTGTTGCTGATGTTGAGGCTGATCAACCTAGCGATGAAAGGAGACCTAGGAAGCGCGGAAGGAAGCCTGCTAATGGAAGGGACGAACCTCTAAATCATGTGGAGGCAGAGAGGCAAAGGCGTGAGAAGCTTAATCAGCGTTTTTACGCCTTAAGAGCTGTTGTACCGAATATTTCCAAGATGGACAAGGCATCTTTACTTGGTGATGCTATTGCTTACATCAATGAGCTTCAAGCGAAACTCAAGATCATGGAGTCAGAGAGAGAATCATTTGGAAGCAGTACTTCCAGGGATGGATCAGGCAACTCGAGATCAGAAAATCGTCATCAGAATACTAGAGTTTCTCTTCCGGATGTGGATATTCAAGCTTCTCAAGATGAGGTAATAGTAAAGGTCAGCTGTTCTCTTGATACTCATCCTGTTTCGAAACTAATCGAAACATTCAAAGAGGCACAAATCAGTGTTGTAGAGTCGAAACTTGCTGCTGCAAATGATACTATCTACCATAATTTTGTAATTAAGTCAGAAGGATCTGAACAGCTTACCAAGGACAAGTTGATTGCAGCATTTGCCCGAGAATCCAACTCCTTACAAACCCAAACTTTGTCCATATAG

Protein sequence

>Msa1341570

MGSIKRMIWNEEEKTMVGAILGARALDFLINNCLSNESGLIAVGESVDSLQNKLSDLVENSSSNFNWNYAIYWRLSKSKSGDYVLCWADGCCREPNEEEGGVRETLSLRIEEEKEEEEEEGMKQSMKKWVLQKLHKAFGGSDEDNYAFGLDRVTDTEMFFLASMYFFFPKGYGGPGKCFASGKHLWFKSVSDYCFRSFLAKSAGIQTVVLVPTDFGVVELGSVRLLPEIFDLLNKIKSLFSISKPATQSLSLYPSVVNEESTVSNGVQVPKVVLNLNNGRTHFREKLAIRKMDSNNVNNNSINFPSARNGICGSTWGVNQGQGEFFASNGVRKDFRLNNNNSNYQPQRQMPMQIDFSGANSRANSARPVIAESELVADVEADQPSDERRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESERESFGSSTSRDGSGNSRSENRHQNTRVSLPDVDIQASQDEVIVKVSCSLDTHPVSKLIETFKEAQISVVESKLAAANDTIYHNFVIKSEGSEQLTKDKLIAAFARESNSLQTQTLSI*