AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1258100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258100 MtrunA17_Chr4g0056891 98.276 232 4 0 4 235 1 232 1.38e-170 469
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258100 AT1G62850.2 66.071 224 64 4 16 235 20 235 1.97e-92 271
Msa1258100 AT1G62850.3 66.071 224 64 4 16 235 20 235 1.97e-92 271
Msa1258100 AT1G62850.4 66.154 195 54 4 16 206 20 206 3.83e-79 236

Find 92 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTAATACTACCATAAT+TGG 0.127862 8_2:+59248645 Msa1258100:three_prime_UTR
TCCAATTATGGTAGTATTAA+AGG 0.179603 8_2:-59248646 None:intergenic
GATAGATAGTTTAAAGATTC+TGG 0.203643 8_2:-59248492 None:intergenic
GCTTCCTCAGCTTCAGATTC+TGG 0.206596 8_2:+59243567 Msa1258100:CDS
TAGATCGATGTTCGGCTTCT+TGG 0.249968 8_2:-59243635 None:intergenic
AAACTTCTGTGTTCTAGTTT+TGG 0.258270 8_2:-59246842 None:intergenic
AAAGAAAAGAGAGAGGGTTT+TGG 0.274936 8_2:+59243336 Msa1258100:five_prime_UTR
ATGTATGATGTATCCAATTA+TGG 0.303636 8_2:-59248658 None:intergenic
GGATGCTTTGGCAAAGCTTC+AGG 0.322950 8_2:+59246961 Msa1258100:CDS
TGCTCTTCTGAGGGAGGTGG+TGG 0.329151 8_2:-59248201 None:intergenic
GAATTCGACATGTGTCTTTA+CGG 0.331461 8_2:+59248898 Msa1258100:three_prime_UTR
AATGTTACCTTCACTTGATA+AGG 0.333324 8_2:+59249050 Msa1258100:three_prime_UTR
AAGCAATGTACTACTGGAAT+TGG 0.353382 8_2:-59249011 None:intergenic
ATTAATGTTGTTTGAATCCT+TGG 0.353412 8_2:-59248718 None:intergenic
TTTGTACTTGGGAGAAGGTT+GGG 0.373564 8_2:+59248952 Msa1258100:three_prime_UTR
CTCCATTCCTAAAATCACTT+TGG 0.373972 8_2:+59243677 Msa1258100:CDS
GTTAAAGAAATATTTATGTT+TGG 0.375505 8_2:-59249188 None:intergenic
GTCAGCTTAAGCCGCAATTA+CGG 0.379476 8_2:+59248875 Msa1258100:three_prime_UTR
ACCTTCACTTGATAAGGGTT+TGG 0.380483 8_2:+59249056 Msa1258100:three_prime_UTR
TCAGCTTAAGCCGCAATTAC+GGG 0.387371 8_2:+59248876 Msa1258100:three_prime_UTR
CTTCCTCAGCTTCAGATTCT+GGG 0.393020 8_2:+59243568 Msa1258100:CDS
TGAAGAGAGGAGAGGAAGAA+AGG 0.398042 8_2:-59243507 None:intergenic
ATGTTACCTTCACTTGATAA+GGG 0.403161 8_2:+59249051 Msa1258100:three_prime_UTR
TCCATTCCTAAAATCACTTT+GGG 0.403348 8_2:+59243678 Msa1258100:CDS
AATTCGACATGTGTCTTTAC+GGG 0.406954 8_2:+59248899 Msa1258100:three_prime_UTR
TGAAACAAAACTTGGATGTA+TGG 0.414686 8_2:+59243381 Msa1258100:exon
ATAGTAAAGCAATGTACTAC+TGG 0.416302 8_2:-59249017 None:intergenic
AGAGGAAGAAAGGGCGAGAA+AGG 0.436039 8_2:-59243497 None:intergenic
GAAGAGAGGAGAGGAAGAAA+GGG 0.445403 8_2:-59243506 None:intergenic
AAAGAAGAAGTAAAAGTAGT+TGG 0.447871 8_2:+59248452 Msa1258100:CDS
CGGCTTCTTGGAGAAGCTCA+TGG 0.448424 8_2:-59243623 None:intergenic
ATTGGCTAAGTGAAAGGGTC+AGG 0.448821 8_2:+59246019 Msa1258100:CDS
GGGTAACATTGAGGATGCTT+TGG 0.448922 8_2:+59246949 Msa1258100:CDS
CAGGGAGAAGATTATGCAAA+TGG 0.463990 8_2:+59246038 Msa1258100:CDS
GAGCTACGATTTAATGCAAT+AGG 0.468093 8_2:+59248801 Msa1258100:three_prime_UTR
GTAATGCGAAGAAGAGAAGA+AGG 0.469023 8_2:-59243468 None:intergenic
AAGAAGAAGTAAAAGTAGTT+GGG 0.476573 8_2:+59248453 Msa1258100:CDS
GAGACGTTTGTGCTCTCCTA+TGG 0.480721 8_2:-59248395 None:intergenic
TTTAAACCTGAAACAAAACT+TGG 0.487818 8_2:+59243373 Msa1258100:five_prime_UTR
ACATCATGACATCAGATGAT+TGG 0.489650 8_2:+59248683 Msa1258100:three_prime_UTR
GTCGACATGCGGTTCAATGT+TGG 0.505525 8_2:+59245988 Msa1258100:CDS
TTGTAGATAAAAGCAACATA+TGG 0.511382 8_2:-59248843 None:intergenic
CAAAACTTGGATGTATGGTA+TGG 0.514654 8_2:+59243386 Msa1258100:exon
GGCTTCAACAACCACTAGAA+TGG 0.521120 8_2:+59243407 Msa1258100:CDS
CAAAAGAAAAGAAAAGAGAG+AGG 0.521540 8_2:+59243329 Msa1258100:five_prime_UTR
ATGCAGCAATAAAACCACTT+TGG 0.530385 8_2:-59248756 None:intergenic
TTTCTTCAGGGGTAACATTG+AGG 0.534771 8_2:+59246940 Msa1258100:intron
GCTCTTCTGAGGGAGGTGGT+GGG 0.534879 8_2:-59248200 None:intergenic
GCGCATCGAATTGCAGTGGC+GGG 0.539361 8_2:-59243546 None:intergenic
AGTATCCTCTCGGCTTTCGC+AGG 0.539470 8_2:+59243599 Msa1258100:CDS
AGCGGAGATAGATCGATGTT+CGG 0.541156 8_2:-59243643 None:intergenic
ATTGAACCGCATGTCGACCT+TGG 0.541896 8_2:-59245983 None:intergenic
TTTGCCAGAAGTGGAGGACC+TGG 0.545145 8_2:+59243824 Msa1258100:CDS
GGCACATTGGCTAAGTGAAA+GGG 0.546502 8_2:+59246014 Msa1258100:CDS
TATTCCTTTCACCATTCTAG+TGG 0.547459 8_2:-59243418 None:intergenic
CACTTCTGTAGGGCTGCCAT+AGG 0.548523 8_2:+59248379 Msa1258100:intron
AAAATCGTATGAACAAGGAT+GGG 0.550226 8_2:+59246800 Msa1258100:CDS
TGCCAGAAGTGGAGGACCTG+GGG 0.553451 8_2:+59243826 Msa1258100:CDS
AATGCGAAGAAGAGAAGAAG+GGG 0.560405 8_2:-59243466 None:intergenic
AGGCACATTGGCTAAGTGAA+AGG 0.561094 8_2:+59246013 Msa1258100:CDS
AAAAGAAAAGAAAAGAGAGA+GGG 0.563401 8_2:+59243330 Msa1258100:five_prime_UTR
TTGCCAGAAGTGGAGGACCT+GGG 0.565073 8_2:+59243825 Msa1258100:CDS
TACGGGAAGTCAACAACCCT+GGG 0.571478 8_2:+59248916 Msa1258100:three_prime_UTR
AACAACATTAATCAACATGA+AGG 0.575498 8_2:+59248729 Msa1258100:three_prime_UTR
GCCAAACCCTTATCAAGTGA+AGG 0.576756 8_2:-59249057 None:intergenic
CTATCAGAAACTAAATCACA+AGG 0.584249 8_2:-59248977 None:intergenic
TAATGCGAAGAAGAGAAGAA+GGG 0.588164 8_2:-59243467 None:intergenic
CATGCGGTTCAATGTTGGAA+AGG 0.591093 8_2:+59245993 Msa1258100:CDS
ATGTCGAATTCCCGTAATTG+CGG 0.592225 8_2:-59248886 None:intergenic
AGTGTTGGTCAAATTTGTGA+TGG 0.593127 8_2:+59248779 Msa1258100:three_prime_UTR
AGCGCATCGAATTGCAGTGG+CGG 0.596376 8_2:-59243547 None:intergenic
GGAACAACAAAGTATCCTCT+CGG 0.606425 8_2:+59243589 Msa1258100:CDS
CAAACGTCTCAAAAGCAAGA+AGG 0.607475 8_2:+59248408 Msa1258100:CDS
TTACGGGAAGTCAACAACCC+TGG 0.618750 8_2:+59248915 Msa1258100:three_prime_UTR
TCAATGTTGGAAAGGCACAT+TGG 0.618902 8_2:+59246001 Msa1258100:CDS
AAATCGTATGAACAAGGATG+GGG 0.621165 8_2:+59246801 Msa1258100:CDS
GTTCCCAGAATCTGAAGCTG+AGG 0.628074 8_2:-59243571 None:intergenic
TTGGCTAAGTGAAAGGGTCA+GGG 0.636328 8_2:+59246020 Msa1258100:CDS
CGAGCGCTGTAATTGAAGAG+AGG 0.641440 8_2:-59243520 None:intergenic
ACAACCACTAGAATGGTGAA+AGG 0.641721 8_2:+59243414 Msa1258100:CDS
GCCAGAAGTGGAGGACCTGG+GGG 0.642506 8_2:+59243827 Msa1258100:CDS
ATGCGAAGAAGAGAAGAAGG+GGG 0.642820 8_2:-59243465 None:intergenic
AACATGAAGGATATCCAAAG+TGG 0.646604 8_2:+59248742 Msa1258100:three_prime_UTR
ATTGGTTGAAGATATAACCA+AGG 0.657210 8_2:+59248701 Msa1258100:three_prime_UTR
AATTGCGGCTTAAGCTGACA+AGG 0.663038 8_2:-59248871 None:intergenic
TATCAGAAACTAAATCACAA+GGG 0.677403 8_2:-59248976 None:intergenic
AATGGAGGCGTTGTAATCAG+CGG 0.684360 8_2:-59243661 None:intergenic
GCTGTAATTGAAGAGAGGAG+AGG 0.684565 8_2:-59243515 None:intergenic
GGAAGCGCATCGAATTGCAG+TGG 0.684620 8_2:-59243550 None:intergenic
ATGGACCTGCGAAAGCCGAG+AGG 0.719112 8_2:-59243604 None:intergenic
TGAACACCAAGGTCGACATG+CGG 0.719333 8_2:+59245977 Msa1258100:CDS
TGATTGTACAGTGAACACCA+AGG 0.820851 8_2:+59245966 Msa1258100:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGAAAAAAAATATTAGA+TGG + chr8_2:59246375-59246394 Msa1258100:intron 10.0%
!! AATATGTTTCTTATAAATAA+TGG - chr8_2:59246640-59246659 None:intergenic 10.0%
!! TTTATAAGAAACATATTTAT+AGG + chr8_2:59246643-59246662 Msa1258100:intron 10.0%
!!! TGATTTTTATATAGTTTTGT+TGG + chr8_2:59243777-59243796 Msa1258100:intron 15.0%
!!! GATTTTTATATAGTTTTGTT+GGG + chr8_2:59243778-59243797 Msa1258100:intron 15.0%
!!! AATTCATTTTATAAGGTATT+AGG + chr8_2:59243921-59243940 Msa1258100:intron 15.0%
!! TAAAATAAATCAATCTTCAA+AGG + chr8_2:59244153-59244172 Msa1258100:intron 15.0%
!!! TATCTAATGTAAATTTTGTA+GGG + chr8_2:59245567-59245586 Msa1258100:intron 15.0%
!! TAGTTAAATTTCATACAAAA+TGG + chr8_2:59246218-59246237 Msa1258100:intron 15.0%
!! AGTTAAATTTCATACAAAAT+GGG + chr8_2:59246219-59246238 Msa1258100:intron 15.0%
!! TATTTATAGAGAAAAAGAAA+GGG - chr8_2:59246468-59246487 None:intergenic 15.0%
!! ATATTTATAGAGAAAAAGAA+AGG - chr8_2:59246469-59246488 None:intergenic 15.0%
!! ATAAATATTTGTAAGCTAAT+AGG + chr8_2:59246481-59246500 Msa1258100:intron 15.0%
!! TAAATATTTGTAAGCTAATA+GGG + chr8_2:59246482-59246501 Msa1258100:intron 15.0%
!! AATACAAAAATTCAATAGAA+TGG - chr8_2:59246875-59246894 None:intergenic 15.0%
!! CATATAATTATAACTTCAAA+GGG - chr8_2:59247974-59247993 None:intergenic 15.0%
!! ACATATAATTATAACTTCAA+AGG - chr8_2:59247975-59247994 None:intergenic 15.0%
!!! TTATTTTAATTCAACTGTTT+TGG + chr8_2:59249128-59249147 Msa1258100:three_prime_UTR 15.0%
!! GTTAAAGAAATATTTATGTT+TGG - chr8_2:59249191-59249210 None:intergenic 15.0%
!!! GTGTAAGAATTCATTTTATA+AGG + chr8_2:59243914-59243933 Msa1258100:intron 20.0%
!! TTAATTCAACATGATATACA+AGG - chr8_2:59243971-59243990 None:intergenic 20.0%
!! AAATACTTTAAACATCTTGA+AGG + chr8_2:59244371-59244390 Msa1258100:intron 20.0%
!! AAAACATTCATAAATAACAG+AGG + chr8_2:59244733-59244752 Msa1258100:intron 20.0%
!! AAACATTCATAAATAACAGA+GGG + chr8_2:59244734-59244753 Msa1258100:intron 20.0%
!! TATAATTGTTGAGAAAAAAG+TGG + chr8_2:59244823-59244842 Msa1258100:intron 20.0%
!!! CTATTTTAAGTTTTTTTGCT+TGG + chr8_2:59245093-59245112 Msa1258100:intron 20.0%
!! TCAATTTAAACTGATATGAA+GGG - chr8_2:59245256-59245275 None:intergenic 20.0%
!!! TTTTGTAATTTGTAGGATTA+TGG - chr8_2:59245527-59245546 None:intergenic 20.0%
!! CAAAATTTACATTAGATACA+GGG - chr8_2:59245565-59245584 None:intergenic 20.0%
!! ACAAAATTTACATTAGATAC+AGG - chr8_2:59245566-59245585 None:intergenic 20.0%
!!! GTATCTAATGTAAATTTTGT+AGG + chr8_2:59245566-59245585 Msa1258100:intron 20.0%
!!! ATCTAATGTAAATTTTGTAG+GGG + chr8_2:59245568-59245587 Msa1258100:intron 20.0%
!! TTAACTATTATTTAGCAAGA+AGG - chr8_2:59246205-59246224 None:intergenic 20.0%
!!! GTATTTTTTTAATTGTATGC+TGG + chr8_2:59246890-59246909 Msa1258100:intron 20.0%
!!! ACTGAAGTATTTAAGTTTTA+AGG - chr8_2:59247060-59247079 None:intergenic 20.0%
!!! TTTAAAATGCCACTATTATT+GGG - chr8_2:59247191-59247210 None:intergenic 20.0%
!!! ATTTAAAATGCCACTATTAT+TGG - chr8_2:59247192-59247211 None:intergenic 20.0%
!!! TTCTATTACTTATTTTTCTC+TGG + chr8_2:59247284-59247303 Msa1258100:intron 20.0%
!!! TAGAATTTGATTTACTATGA+GGG - chr8_2:59247450-59247469 None:intergenic 20.0%
!!! TTAGAATTTGATTTACTATG+AGG - chr8_2:59247451-59247470 None:intergenic 20.0%
!!! AAATCAAATTCTAAGAGTTT+TGG + chr8_2:59247457-59247476 Msa1258100:intron 20.0%
!!! ATTCTTGATTGAAGTATTAA+AGG + chr8_2:59247534-59247553 Msa1258100:intron 20.0%
!! TTCTTCTTTACTATCTATAT+TGG + chr8_2:59247585-59247604 Msa1258100:intron 20.0%
!! TAATTATATGTAACTCTTTG+TGG + chr8_2:59247984-59248003 Msa1258100:intron 20.0%
!! TGTAATTGAAAAGGAATTAA+GGG - chr8_2:59248075-59248094 None:intergenic 20.0%
!!! TGTTTTGAAAGATATAACAA+TGG + chr8_2:59248118-59248137 Msa1258100:intron 20.0%
!! ATACATATTCTTTATTCTTC+AGG + chr8_2:59248268-59248287 Msa1258100:intron 20.0%
!!! TTATTCTTCAGGTTAAAATA+CGG + chr8_2:59248279-59248298 Msa1258100:intron 20.0%
!! AGAATGACATAAAAGAAATT+TGG - chr8_2:59248576-59248595 None:intergenic 20.0%
! AAAAGAAAAGAAAAGAGAGA+GGG + chr8_2:59243330-59243349 Msa1258100:five_prime_UTR 25.0%
! TTTAAACCTGAAACAAAACT+TGG + chr8_2:59243373-59243392 Msa1258100:five_prime_UTR 25.0%
!!! GTCTATGTTTTTTTTGCTTA+AGG + chr8_2:59243892-59243911 Msa1258100:intron 25.0%
! GAAAAAAATCTTAATAGCCA+AGG + chr8_2:59244005-59244024 Msa1258100:intron 25.0%
! TTAAAACTCAATTGAAGCTA+CGG - chr8_2:59244057-59244076 None:intergenic 25.0%
! ATTAAATCAGGTAAAAGCTA+CGG - chr8_2:59244093-59244112 None:intergenic 25.0%
!! ATGATTTCAGTAGAATGTTT+TGG + chr8_2:59244623-59244642 Msa1258100:intron 25.0%
! ATAGCTAAGAAAATCAACAT+GGG - chr8_2:59245077-59245096 None:intergenic 25.0%
! AATAGCTAAGAAAATCAACA+TGG - chr8_2:59245078-59245097 None:intergenic 25.0%
! GTTCATGAATACATAAGTAA+AGG - chr8_2:59245156-59245175 None:intergenic 25.0%
! GTCAATTTAAACTGATATGA+AGG - chr8_2:59245257-59245276 None:intergenic 25.0%
!! ATTCGTTTTATATCCATGTT+GGG + chr8_2:59245609-59245628 Msa1258100:intron 25.0%
!! TTTAAGTTATTAACTGCAAG+TGG - chr8_2:59245933-59245952 None:intergenic 25.0%
! AATTTATGACTCTTTACCTA+CGG - chr8_2:59246514-59246533 None:intergenic 25.0%
! ACATAAACCTTAACTTTGTA+CGG + chr8_2:59246611-59246630 Msa1258100:intron 25.0%
! AAAATTCAATAGAATGGAAG+AGG - chr8_2:59246869-59246888 None:intergenic 25.0%
! TTATTCTTTCCCAATAATAG+TGG + chr8_2:59247179-59247198 Msa1258100:intron 25.0%
!!! TATTACTTATTTTTCTCTGG+TGG + chr8_2:59247287-59247306 Msa1258100:intron 25.0%
!! TCATTCATTTTCTTCATTCT+CGG + chr8_2:59247419-59247438 Msa1258100:intron 25.0%
!!! ACTTTTGTTATAAAGACAGT+AGG - chr8_2:59247652-59247671 None:intergenic 25.0%
!!! CTTTTCTTTGAGGAAATTAT+TGG - chr8_2:59247799-59247818 None:intergenic 25.0%
! AAATGGATCTTATATTAAGG+GGG - chr8_2:59247877-59247896 None:intergenic 25.0%
! GAAATGGATCTTATATTAAG+GGG - chr8_2:59247878-59247897 None:intergenic 25.0%
! GGAAATGGATCTTATATTAA+GGG - chr8_2:59247879-59247898 None:intergenic 25.0%
! TGGAAATGGATCTTATATTA+AGG - chr8_2:59247880-59247899 None:intergenic 25.0%
! GTAATTGAAAAGGAATTAAG+GGG - chr8_2:59248074-59248093 None:intergenic 25.0%
! GTGTAATTGAAAAGGAATTA+AGG - chr8_2:59248076-59248095 None:intergenic 25.0%
!! TGCTTTTCTGTTTATGAAAT+GGG + chr8_2:59248141-59248160 Msa1258100:intron 25.0%
! TTATGAAATGGGGAAAAAAT+AGG + chr8_2:59248152-59248171 Msa1258100:intron 25.0%
! AAAGAAGAAGTAAAAGTAGT+TGG + chr8_2:59248452-59248471 Msa1258100:CDS 25.0%
! AAGAAGAAGTAAAAGTAGTT+GGG + chr8_2:59248453-59248472 Msa1258100:CDS 25.0%
! GATAGATAGTTTAAAGATTC+TGG - chr8_2:59248495-59248514 None:intergenic 25.0%
!! AAAAGAAATTTGGTAATAGC+AGG - chr8_2:59248566-59248585 None:intergenic 25.0%
! TCCTTTAATACTACCATAAT+TGG + chr8_2:59248645-59248664 Msa1258100:three_prime_UTR 25.0%
! TCCAATTATGGTAGTATTAA+AGG - chr8_2:59248649-59248668 None:intergenic 25.0%
! ATGTATGATGTATCCAATTA+TGG - chr8_2:59248661-59248680 None:intergenic 25.0%
!! ATTAATGTTGTTTGAATCCT+TGG - chr8_2:59248721-59248740 None:intergenic 25.0%
! AACAACATTAATCAACATGA+AGG + chr8_2:59248729-59248748 Msa1258100:three_prime_UTR 25.0%
! TTGTAGATAAAAGCAACATA+TGG - chr8_2:59248846-59248865 None:intergenic 25.0%
! TATCAGAAACTAAATCACAA+GGG - chr8_2:59248979-59248998 None:intergenic 25.0%
CAAAAGAAAAGAAAAGAGAG+AGG + chr8_2:59243329-59243348 Msa1258100:five_prime_UTR 30.0%
!!! ATACATCCAAGTTTTGTTTC+AGG - chr8_2:59243382-59243401 None:intergenic 30.0%
TGAAACAAAACTTGGATGTA+TGG + chr8_2:59243381-59243400 Msa1258100:exon 30.0%
TCCATTCCTAAAATCACTTT+GGG + chr8_2:59243678-59243697 Msa1258100:CDS 30.0%
TCAAGGAATGAGAAAATTGA+TGG - chr8_2:59243716-59243735 None:intergenic 30.0%
GGAGTAGAAATCATATAGAA+AGG + chr8_2:59243942-59243961 Msa1258100:intron 30.0%
!!! TTGAGTTTTAAGACATTTCC+TGG + chr8_2:59244066-59244085 Msa1258100:intron 30.0%
GCAATGTTGGAAATTAAATC+AGG - chr8_2:59244105-59244124 None:intergenic 30.0%
GTTGAAGATGCTTGATATAA+GGG - chr8_2:59244130-59244149 None:intergenic 30.0%
AGTTGAAGATGCTTGATATA+AGG - chr8_2:59244131-59244150 None:intergenic 30.0%
GTATTTGTAGAGTAACAAAG+TGG - chr8_2:59244357-59244376 None:intergenic 30.0%
! AAATGCTTTAAACGTCTTGA+AGG - chr8_2:59244686-59244705 None:intergenic 30.0%
ACAAACATCTTTGAGCAATA+TGG + chr8_2:59244775-59244794 Msa1258100:intron 30.0%
TAGAACAACTCAATCTTCAA+AGG - chr8_2:59244888-59244907 None:intergenic 30.0%
! TACAAGTTGAAGAAGATGTT+TGG + chr8_2:59244906-59244925 Msa1258100:intron 30.0%
! ACAAGTTGAAGAAGATGTTT+GGG + chr8_2:59244907-59244926 Msa1258100:intron 30.0%
CATGAATACATAAGTAAAGG+AGG - chr8_2:59245153-59245172 None:intergenic 30.0%
ACTTATTAGAGCTTATGTAC+TGG + chr8_2:59245275-59245294 Msa1258100:intron 30.0%
ACTAAGTTGTTTACCCAAAT+AGG + chr8_2:59245501-59245520 Msa1258100:intron 30.0%
!!! CATGTGGTTTTGTAATTTGT+AGG - chr8_2:59245534-59245553 None:intergenic 30.0%
CAACATGGATATAAAACGAA+TGG - chr8_2:59245610-59245629 None:intergenic 30.0%
! CATTCGTTTTATATCCATGT+TGG + chr8_2:59245608-59245627 Msa1258100:intron 30.0%
TGTGTGTATTGTGATATGAT+AGG + chr8_2:59245648-59245667 Msa1258100:intron 30.0%
ATTGTGATATGATAGGAAAC+TGG + chr8_2:59245655-59245674 Msa1258100:intron 30.0%
GACTTTCTGTTATAGAAGAA+AGG + chr8_2:59245750-59245769 Msa1258100:intron 30.0%
TCTGTTATAGAAGAAAGGAT+AGG + chr8_2:59245755-59245774 Msa1258100:intron 30.0%
CTGTTATAGAAGAAAGGATA+GGG + chr8_2:59245756-59245775 Msa1258100:intron 30.0%
TGTTATAGAAGAAAGGATAG+GGG + chr8_2:59245757-59245776 Msa1258100:intron 30.0%
!! AGAGTTGTTTAGAGTCATTT+TGG + chr8_2:59245799-59245818 Msa1258100:intron 30.0%
AAACAGTCAATCACATGATT+TGG - chr8_2:59246094-59246113 None:intergenic 30.0%
!!! AGTATTTTAGGTTTGAAGCA+GGG - chr8_2:59246261-59246280 None:intergenic 30.0%
CTCAAGTTAAAGCACATTAT+TGG - chr8_2:59246316-59246335 None:intergenic 30.0%
TGTAAACAATGTTAGTCATG+AGG - chr8_2:59246594-59246613 None:intergenic 30.0%
ACCATTTGTGTATATCTAGT+TGG + chr8_2:59246697-59246716 Msa1258100:intron 30.0%
CCATTTGTGTATATCTAGTT+GGG + chr8_2:59246698-59246717 Msa1258100:intron 30.0%
TCTTGAATTGTATTGTTCCT+TGG + chr8_2:59246770-59246789 Msa1258100:intron 30.0%
AAAAATCGTATGAACAAGGA+TGG + chr8_2:59246799-59246818 Msa1258100:CDS 30.0%
AAAATCGTATGAACAAGGAT+GGG + chr8_2:59246800-59246819 Msa1258100:CDS 30.0%
!!! AAACTTCTGTGTTCTAGTTT+TGG - chr8_2:59246845-59246864 None:intergenic 30.0%
TGAAGAAAAATCGCAGAATA+AGG - chr8_2:59246928-59246947 None:intergenic 30.0%
! TTATTCTGCGATTTTTCTTC+AGG + chr8_2:59246927-59246946 Msa1258100:intron 30.0%
! TATTCTGCGATTTTTCTTCA+GGG + chr8_2:59246928-59246947 Msa1258100:intron 30.0%
!! TCTTGATAGTGAACAAACTA+GGG + chr8_2:59247364-59247383 Msa1258100:intron 30.0%
! CATTCATTTTCTTCATTCTC+GGG + chr8_2:59247420-59247439 Msa1258100:intron 30.0%
!!! ACTATTTTTATGATTCTCCG+AGG + chr8_2:59247485-59247504 Msa1258100:intron 30.0%
TATTAAAGGACTTCGCAAAT+TGG + chr8_2:59247548-59247567 Msa1258100:intron 30.0%
AAGTCCATAGTCTACTTATT+TGG + chr8_2:59247668-59247687 Msa1258100:intron 30.0%
! TTTTCCTTCTCTTTAATCCT+TGG - chr8_2:59247700-59247719 None:intergenic 30.0%
AGGATTAAAGAGAAGGAAAA+TGG + chr8_2:59247700-59247719 Msa1258100:intron 30.0%
GGATTAAAGAGAAGGAAAAT+GGG + chr8_2:59247701-59247720 Msa1258100:intron 30.0%
GATTAAAGAGAAGGAAAATG+GGG + chr8_2:59247702-59247721 Msa1258100:intron 30.0%
AATGGATCTTATATTAAGGG+GGG - chr8_2:59247876-59247895 None:intergenic 30.0%
AACACTTTCTTACCATAAAG+GGG - chr8_2:59247923-59247942 None:intergenic 30.0%
CAACACTTTCTTACCATAAA+GGG - chr8_2:59247924-59247943 None:intergenic 30.0%
TCAACACTTTCTTACCATAA+AGG - chr8_2:59247925-59247944 None:intergenic 30.0%
ATTATAACTTCAAAGGGAAG+AGG - chr8_2:59247968-59247987 None:intergenic 30.0%
CTAAGTCTGTGTAATTGAAA+AGG - chr8_2:59248084-59248103 None:intergenic 30.0%
! GTGCTTTTCTGTTTATGAAA+TGG + chr8_2:59248140-59248159 Msa1258100:intron 30.0%
! GCTTTTCTGTTTATGAAATG+GGG + chr8_2:59248142-59248161 Msa1258100:intron 30.0%
TGTTAGCATTAGAATTACCA+AGG + chr8_2:59248336-59248355 Msa1258100:intron 30.0%
GTTAGCATTAGAATTACCAA+GGG + chr8_2:59248337-59248356 Msa1258100:intron 30.0%
CTTAGTAAGTTCGTGATTAT+TGG + chr8_2:59248517-59248536 Msa1258100:intron 30.0%
!! AATGTGTTACTTGAATCTCT+TGG + chr8_2:59248601-59248620 Msa1258100:intron 30.0%
ATTGGTTGAAGATATAACCA+AGG + chr8_2:59248701-59248720 Msa1258100:three_prime_UTR 30.0%
!! AACATGTCCATTTTTGTACT+TGG + chr8_2:59248940-59248959 Msa1258100:three_prime_UTR 30.0%
!! ACATGTCCATTTTTGTACTT+GGG + chr8_2:59248941-59248960 Msa1258100:three_prime_UTR 30.0%
CTATCAGAAACTAAATCACA+AGG - chr8_2:59248980-59248999 None:intergenic 30.0%
ATAGTAAAGCAATGTACTAC+TGG - chr8_2:59249020-59249039 None:intergenic 30.0%
AATGTTACCTTCACTTGATA+AGG + chr8_2:59249050-59249069 Msa1258100:three_prime_UTR 30.0%
ATGTTACCTTCACTTGATAA+GGG + chr8_2:59249051-59249070 Msa1258100:three_prime_UTR 30.0%
! AAAGAAAAGAGAGAGGGTTT+TGG + chr8_2:59243336-59243355 Msa1258100:five_prime_UTR 35.0%
! AAGAAAAGAGAGAGGGTTTT+GGG + chr8_2:59243337-59243356 Msa1258100:five_prime_UTR 35.0%
CAAAACTTGGATGTATGGTA+TGG + chr8_2:59243386-59243405 Msa1258100:exon 35.0%
TATTCCTTTCACCATTCTAG+TGG - chr8_2:59243421-59243440 None:intergenic 35.0%
TAATGCGAAGAAGAGAAGAA+GGG - chr8_2:59243470-59243489 None:intergenic 35.0%
!! CAAAGTGATTTTAGGAATGG+AGG - chr8_2:59243679-59243698 None:intergenic 35.0%
CTCCATTCCTAAAATCACTT+TGG + chr8_2:59243677-59243696 Msa1258100:CDS 35.0%
!! ACCCAAAGTGATTTTAGGAA+TGG - chr8_2:59243682-59243701 None:intergenic 35.0%
! AACAGACCCAAAGTGATTTT+AGG - chr8_2:59243687-59243706 None:intergenic 35.0%
AATAGCCAAGGAAATCAACA+TGG + chr8_2:59244017-59244036 Msa1258100:intron 35.0%
ATAGCCAAGGAAATCAACAT+GGG + chr8_2:59244018-59244037 Msa1258100:intron 35.0%
ATCAACATGGGAAAGGATTA+AGG + chr8_2:59244030-59244049 Msa1258100:intron 35.0%
GAAGGTAATTGCTAAGAAAG+AGG - chr8_2:59244232-59244251 None:intergenic 35.0%
TTTGTAGAGTAACAAAGTGG+TGG - chr8_2:59244354-59244373 None:intergenic 35.0%
! AATAAAGTACTCCAACTACC+AGG + chr8_2:59244436-59244455 Msa1258100:intron 35.0%
! TTTATCCCTCCAAGACTTTT+CGG + chr8_2:59244510-59244529 Msa1258100:intron 35.0%
TTTCTTAGTCCGAAAAGTCT+TGG - chr8_2:59244522-59244541 None:intergenic 35.0%
GCATTTGTAGAGAAACAAAG+TGG + chr8_2:59244700-59244719 Msa1258100:intron 35.0%
GCTAGAAGATTATAAAAGCC+TGG + chr8_2:59244978-59244997 Msa1258100:intron 35.0%
AAGATTATAAAAGCCTGGCA+TGG + chr8_2:59244983-59245002 Msa1258100:intron 35.0%
GGCGTTATACTTTGTCATTA+AGG + chr8_2:59245004-59245023 Msa1258100:intron 35.0%
TAAGAAAATCAACATGGGCA+AGG - chr8_2:59245072-59245091 None:intergenic 35.0%
GAATACATAAGTAAAGGAGG+AGG - chr8_2:59245150-59245169 None:intergenic 35.0%
!!! GGAGTGACTTGCTTTTTTAT+AGG - chr8_2:59245183-59245202 None:intergenic 35.0%
!! GTACTGGTATAAGCATTTTG+TGG + chr8_2:59245291-59245310 Msa1258100:intron 35.0%
! AAGCATTTTGTGGTACTACT+TGG + chr8_2:59245301-59245320 Msa1258100:intron 35.0%
TTTGGGTAAACAACTTAGTG+AGG - chr8_2:59245500-59245519 None:intergenic 35.0%
TGTAGGATTATGGCCTATTT+GGG - chr8_2:59245517-59245536 None:intergenic 35.0%
TTGTAGGATTATGGCCTATT+TGG - chr8_2:59245518-59245537 None:intergenic 35.0%
TATATCCATGTTGGGATCAT+TGG + chr8_2:59245617-59245636 Msa1258100:intron 35.0%
!! ATTTTGGAGAGTTCTCTCTT+TGG + chr8_2:59245815-59245834 Msa1258100:intron 35.0%
! TTTGTTTCTCCAGCATTGTA+AGG + chr8_2:59245893-59245912 Msa1258100:intron 35.0%
! TTGTTTCTCCAGCATTGTAA+GGG + chr8_2:59245894-59245913 Msa1258100:intron 35.0%
AGTTATTAACTGCAAGTGGA+TGG - chr8_2:59245929-59245948 None:intergenic 35.0%
!! TGATTTGGTAGTGATGAGAA+AGG - chr8_2:59246079-59246098 None:intergenic 35.0%
!!! GCTTTTGAAATGTTGAGTCA+TGG + chr8_2:59246144-59246163 Msa1258100:intron 35.0%
!!! GAGTATTTTAGGTTTGAAGC+AGG - chr8_2:59246262-59246281 None:intergenic 35.0%
!!! AGCTCAAGCAAGAGTATTTT+AGG - chr8_2:59246273-59246292 None:intergenic 35.0%
TTAGATGGACCTCATAAGAA+CGG + chr8_2:59246390-59246409 Msa1258100:intron 35.0%
CCCAACTAGATATACACAAA+TGG - chr8_2:59246701-59246720 None:intergenic 35.0%
GGAGAAAAATCGTATGAACA+AGG + chr8_2:59246795-59246814 Msa1258100:intron 35.0%
AAATCGTATGAACAAGGATG+GGG + chr8_2:59246801-59246820 Msa1258100:CDS 35.0%
! ATTCTGCGATTTTTCTTCAG+GGG + chr8_2:59246929-59246948 Msa1258100:intron 35.0%
CTGTAACAGTTATCATTGCT+TGG + chr8_2:59247098-59247117 Msa1258100:intron 35.0%
AACAGTTATCATTGCTTGGT+AGG + chr8_2:59247102-59247121 Msa1258100:intron 35.0%
GAAAGAATAATGTCTCTGGT+AGG - chr8_2:59247169-59247188 None:intergenic 35.0%
TTGGGAAAGAATAATGTCTC+TGG - chr8_2:59247173-59247192 None:intergenic 35.0%
!! TACTTATTTTTCTCTGGTGG+TGG + chr8_2:59247290-59247309 Msa1258100:intron 35.0%
! AGTTTGTTCACTATCAAGAC+AGG - chr8_2:59247363-59247382 None:intergenic 35.0%
!! GTCTTGATAGTGAACAAACT+AGG + chr8_2:59247363-59247382 Msa1258100:intron 35.0%
!! CTTGATAGTGAACAAACTAG+GGG + chr8_2:59247365-59247384 Msa1258100:intron 35.0%
!! TTGATAGTGAACAAACTAGG+GGG + chr8_2:59247366-59247385 Msa1258100:intron 35.0%
TATTATAACTTCCTCGTCCT+CGG - chr8_2:59247505-59247524 None:intergenic 35.0%
!!! TATTCCTTTTGCTGTTGAGT+TGG + chr8_2:59247613-59247632 Msa1258100:intron 35.0%
GGTTCCAAATAAGTAGACTA+TGG - chr8_2:59247675-59247694 None:intergenic 35.0%
! TACTTATTTGGAACCATCCA+AGG + chr8_2:59247680-59247699 Msa1258100:intron 35.0%
!!! CTGTTGTCTCAGTTTTATTG+TGG + chr8_2:59247733-59247752 Msa1258100:intron 35.0%
! GTTGATACGACTTTTCTTTG+AGG - chr8_2:59247809-59247828 None:intergenic 35.0%
TTTCAACAACCCTCTCTTAT+TGG + chr8_2:59247843-59247862 Msa1258100:intron 35.0%
TTCAACAACCCTCTCTTATT+GGG + chr8_2:59247844-59247863 Msa1258100:intron 35.0%
! TCACATGAAACTTCTGGAAA+TGG - chr8_2:59247894-59247913 None:intergenic 35.0%
TGGAATTCACATGAAACTTC+TGG - chr8_2:59247900-59247919 None:intergenic 35.0%
AAAGGAATTAAGGGGAAGAA+AGG - chr8_2:59248066-59248085 None:intergenic 35.0%
! TTCTTCTTTTGCTCTTCTGA+GGG - chr8_2:59248213-59248232 None:intergenic 35.0%
! TTTCTTCTTTTGCTCTTCTG+AGG - chr8_2:59248214-59248233 None:intergenic 35.0%
ATCAAATGTGCACTTCTGTA+GGG + chr8_2:59248369-59248388 Msa1258100:intron 35.0%
ACATCATGACATCAGATGAT+TGG + chr8_2:59248683-59248702 Msa1258100:three_prime_UTR 35.0%
AACATGAAGGATATCCAAAG+TGG + chr8_2:59248742-59248761 Msa1258100:three_prime_UTR 35.0%
ATGCAGCAATAAAACCACTT+TGG - chr8_2:59248759-59248778 None:intergenic 35.0%
!! GTTTTATTGCTGCATAGTGT+TGG + chr8_2:59248764-59248783 Msa1258100:three_prime_UTR 35.0%
!! AGTGTTGGTCAAATTTGTGA+TGG + chr8_2:59248779-59248798 Msa1258100:three_prime_UTR 35.0%
GAGCTACGATTTAATGCAAT+AGG + chr8_2:59248801-59248820 Msa1258100:three_prime_UTR 35.0%
GAATTCGACATGTGTCTTTA+CGG + chr8_2:59248898-59248917 Msa1258100:three_prime_UTR 35.0%
AATTCGACATGTGTCTTTAC+GGG + chr8_2:59248899-59248918 Msa1258100:three_prime_UTR 35.0%
AAAAATGGACATGTTACCCA+GGG - chr8_2:59248935-59248954 None:intergenic 35.0%
AAGCAATGTACTACTGGAAT+TGG - chr8_2:59249014-59249033 None:intergenic 35.0%
ACAACCACTAGAATGGTGAA+AGG + chr8_2:59243414-59243433 Msa1258100:CDS 40.0%
AATGCGAAGAAGAGAAGAAG+GGG - chr8_2:59243469-59243488 None:intergenic 40.0%
GTAATGCGAAGAAGAGAAGA+AGG - chr8_2:59243471-59243490 None:intergenic 40.0%
! GGAACAACAAAGTATCCTCT+CGG + chr8_2:59243589-59243608 Msa1258100:CDS 40.0%
! ACTGTGAATTTTGCCAGAAG+TGG + chr8_2:59243815-59243834 Msa1258100:CDS 40.0%
!! CTTTCCCATGTTGATTTCCT+TGG - chr8_2:59244025-59244044 None:intergenic 40.0%
CAAGGAAATCAACATGGGAA+AGG + chr8_2:59244023-59244042 Msa1258100:intron 40.0%
TGATATAAGGGAGGCAATGT+TGG - chr8_2:59244118-59244137 None:intergenic 40.0%
GAAGATGCTTGATATAAGGG+AGG - chr8_2:59244127-59244146 None:intergenic 40.0%
! ATCTGCAACTTGTTCTTCAG+CGG + chr8_2:59244188-59244207 Msa1258100:intron 40.0%
GGTAATTGCTAAGAAAGAGG+TGG - chr8_2:59244229-59244248 None:intergenic 40.0%
ATACACGATGTCTCAACAGA+AGG - chr8_2:59244250-59244269 None:intergenic 40.0%
AAATACCAACACCTGGTAGT+TGG - chr8_2:59244450-59244469 None:intergenic 40.0%
TCAGTTGAAATACCAACACC+TGG - chr8_2:59244572-59244591 None:intergenic 40.0%
TTAGTCCGAAAAGTCTTGGA+GGG - chr8_2:59244518-59244537 None:intergenic 40.0%
GTTGAAATACCAACACCTTG+TGG + chr8_2:59244575-59244594 Msa1258100:intron 40.0%
! ATAAAGTACCTGCAACCACA+AGG - chr8_2:59244593-59244612 None:intergenic 40.0%
! AAGAAGATGTTTGGGATGAC+AGG + chr8_2:59244915-59244934 Msa1258100:intron 40.0%
! TAAGAACGGTGGCTTCATTT+TGG - chr8_2:59245046-59245065 None:intergenic 40.0%
CATGGGCAAGGATTTAAGAA+CGG - chr8_2:59245060-59245079 None:intergenic 40.0%
ATACAGGGTCTAAACACATG+TGG - chr8_2:59245550-59245569 None:intergenic 40.0%
TTCCCTATTCAGGCTCTATT+GGG - chr8_2:59245694-59245713 None:intergenic 40.0%
TTTCCCTATTCAGGCTCTAT+TGG - chr8_2:59245695-59245714 None:intergenic 40.0%
TAGAGCCTGAATAGGGAAAT+AGG + chr8_2:59245696-59245715 Msa1258100:intron 40.0%
TCGTTCCTATTTCCCTATTC+AGG - chr8_2:59245704-59245723 None:intergenic 40.0%
ATGAACTCCTAACCAAAGCT+AGG - chr8_2:59245849-59245868 None:intergenic 40.0%
GTTAGGAGTTCATAGAACTC+TGG + chr8_2:59245856-59245875 Msa1258100:intron 40.0%
ACTTAATGCCCTTACAATGC+TGG - chr8_2:59245905-59245924 None:intergenic 40.0%
TGATTGTACAGTGAACACCA+AGG + chr8_2:59245966-59245985 Msa1258100:intron 40.0%
! TCAATGTTGGAAAGGCACAT+TGG + chr8_2:59246001-59246020 Msa1258100:CDS 40.0%
CAGGGAGAAGATTATGCAAA+TGG + chr8_2:59246038-59246057 Msa1258100:CDS 40.0%
!!! TTTTAGGTTTGAAGCAGGGA+TGG - chr8_2:59246257-59246276 None:intergenic 40.0%
ATACATGCACCGTTCTTATG+AGG - chr8_2:59246402-59246421 None:intergenic 40.0%
ATGGCAACCGTACAAAGTTA+AGG - chr8_2:59246621-59246640 None:intergenic 40.0%
GAATTGTATTGTTCCTTGGC+AGG + chr8_2:59246774-59246793 Msa1258100:intron 40.0%
! ATACGATTTTTCTCCTGCCA+AGG - chr8_2:59246790-59246809 None:intergenic 40.0%
! TTGTATGCTGGCTGTAAGAT+TGG + chr8_2:59246902-59246921 Msa1258100:intron 40.0%
TTTCTTCAGGGGTAACATTG+AGG + chr8_2:59246940-59246959 Msa1258100:intron 40.0%
ACTTCAGTGAGACCTAAGAA+TGG + chr8_2:59247072-59247091 Msa1258100:intron 40.0%
CTTCAGTGAGACCTAAGAAT+GGG + chr8_2:59247073-59247092 Msa1258100:intron 40.0%
CTGTTACAGAACCCATTCTT+AGG - chr8_2:59247087-59247106 None:intergenic 40.0%
GTTATAAAGACAGTAGGACG+CGG - chr8_2:59247646-59247665 None:intergenic 40.0%
CCTTCTCTTTAATCCTTGGA+TGG - chr8_2:59247696-59247715 None:intergenic 40.0%
CCATCCAAGGATTAAAGAGA+AGG + chr8_2:59247693-59247712 Msa1258100:intron 40.0%
GGAATTCACCCAATAAGAGA+GGG - chr8_2:59247855-59247874 None:intergenic 40.0%
ATGTGAATTCCACCCCTTTA+TGG + chr8_2:59247908-59247927 Msa1258100:intron 40.0%
ACTTTCTTACCATAAAGGGG+TGG - chr8_2:59247920-59247939 None:intergenic 40.0%
!! AAAGTGTTGAGAGTGAGTGT+CGG + chr8_2:59247935-59247954 Msa1258100:intron 40.0%
CGACATGTCATATCCTAGAA+GGG - chr8_2:59248015-59248034 None:intergenic 40.0%
ACGACATGTCATATCCTAGA+AGG - chr8_2:59248016-59248035 None:intergenic 40.0%
! ATTTGATGGTTACAAGCCCT+TGG - chr8_2:59248356-59248375 None:intergenic 40.0%
! CTACAGAAGTGCACATTTGA+TGG - chr8_2:59248370-59248389 None:intergenic 40.0%
CATCAAATGTGCACTTCTGT+AGG + chr8_2:59248368-59248387 Msa1258100:intron 40.0%
CAAACGTCTCAAAAGCAAGA+AGG + chr8_2:59248408-59248427 Msa1258100:CDS 40.0%
ATGTCGAATTCCCGTAATTG+CGG - chr8_2:59248889-59248908 None:intergenic 40.0%
CAAAAATGGACATGTTACCC+AGG - chr8_2:59248936-59248955 None:intergenic 40.0%
CCTTCTCCCAAGTACAAAAA+TGG - chr8_2:59248950-59248969 None:intergenic 40.0%
!! CCATTTTTGTACTTGGGAGA+AGG + chr8_2:59248947-59248966 Msa1258100:three_prime_UTR 40.0%
! TTTTGTACTTGGGAGAAGGT+TGG + chr8_2:59248951-59248970 Msa1258100:three_prime_UTR 40.0%
TTTGTACTTGGGAGAAGGTT+GGG + chr8_2:59248952-59248971 Msa1258100:three_prime_UTR 40.0%
ACCTTCACTTGATAAGGGTT+TGG + chr8_2:59249056-59249075 Msa1258100:three_prime_UTR 40.0%
!! GGTTTGGCATTTGCTTTTGA+TGG + chr8_2:59249072-59249091 Msa1258100:three_prime_UTR 40.0%
!! GGCATTTGCTTTTGATGGTA+TGG + chr8_2:59249077-59249096 Msa1258100:three_prime_UTR 40.0%
GGCTTCAACAACCACTAGAA+TGG + chr8_2:59243407-59243426 Msa1258100:CDS 45.0%
ATGCGAAGAAGAGAAGAAGG+GGG - chr8_2:59243468-59243487 None:intergenic 45.0%
GAAGAGAGGAGAGGAAGAAA+GGG - chr8_2:59243509-59243528 None:intergenic 45.0%
TGAAGAGAGGAGAGGAAGAA+AGG - chr8_2:59243510-59243529 None:intergenic 45.0%
GCTGTAATTGAAGAGAGGAG+AGG - chr8_2:59243518-59243537 None:intergenic 45.0%
CTTCCTCAGCTTCAGATTCT+GGG + chr8_2:59243568-59243587 Msa1258100:CDS 45.0%
TAGATCGATGTTCGGCTTCT+TGG - chr8_2:59243638-59243657 None:intergenic 45.0%
AGCGGAGATAGATCGATGTT+CGG - chr8_2:59243646-59243665 None:intergenic 45.0%
!! AATGGAGGCGTTGTAATCAG+CGG - chr8_2:59243664-59243683 None:intergenic 45.0%
! GTGAATTTTGCCAGAAGTGG+AGG + chr8_2:59243818-59243837 Msa1258100:CDS 45.0%
TTATTGACATTCTGACCCCC+AGG - chr8_2:59243845-59243864 None:intergenic 45.0%
GGGGGTCAGAATGTCAATAA+AGG + chr8_2:59243845-59243864 Msa1258100:CDS 45.0%
! TCTGCAACTTGTTCTTCAGC+GGG + chr8_2:59244189-59244208 Msa1258100:intron 45.0%
CAAAGAAGTTTGTACCGTCG+AGG + chr8_2:59244291-59244310 Msa1258100:intron 45.0%
! TTGTACCGTCGAGGTATTCT+TGG + chr8_2:59244300-59244319 Msa1258100:intron 45.0%
AGAGTCCAAGAATACCTCGA+CGG - chr8_2:59244308-59244327 None:intergenic 45.0%
CTTAGTCCGAAAAGTCTTGG+AGG - chr8_2:59244519-59244538 None:intergenic 45.0%
! GATGTTTGGGATGACAGGTT+TGG + chr8_2:59244920-59244939 Msa1258100:intron 45.0%
ACAAAGTATAACGCCATGCC+AGG - chr8_2:59244999-59245018 None:intergenic 45.0%
CCATACCAATGATCCCAACA+TGG - chr8_2:59245625-59245644 None:intergenic 45.0%
CCATGTTGGGATCATTGGTA+TGG + chr8_2:59245622-59245641 Msa1258100:intron 45.0%
AAGCCCAATAGAGCCTGAAT+AGG + chr8_2:59245688-59245707 Msa1258100:intron 45.0%
AGCCCAATAGAGCCTGAATA+GGG + chr8_2:59245689-59245708 Msa1258100:intron 45.0%
ATAGGGAAATAGGAACGACG+CGG + chr8_2:59245706-59245725 Msa1258100:intron 45.0%
GAGCGGTATTCTGTTAGGAT+GGG + chr8_2:59245728-59245747 Msa1258100:intron 45.0%
TTGGATAGAGAGCCTAGCTT+TGG + chr8_2:59245834-59245853 Msa1258100:intron 45.0%
!! TAGAGAGCCTAGCTTTGGTT+AGG + chr8_2:59245839-59245858 Msa1258100:intron 45.0%
GTGTTCACTGTACAATCAGC+AGG - chr8_2:59245964-59245983 None:intergenic 45.0%
CATGCGGTTCAATGTTGGAA+AGG + chr8_2:59245993-59246012 Msa1258100:CDS 45.0%
! AGGCACATTGGCTAAGTGAA+AGG + chr8_2:59246013-59246032 Msa1258100:CDS 45.0%
! GGCACATTGGCTAAGTGAAA+GGG + chr8_2:59246014-59246033 Msa1258100:CDS 45.0%
ATTGGCTAAGTGAAAGGGTC+AGG + chr8_2:59246019-59246038 Msa1258100:CDS 45.0%
TTGGCTAAGTGAAAGGGTCA+GGG + chr8_2:59246020-59246039 Msa1258100:CDS 45.0%
! GCTAATAGGGACTTTTCCGT+AGG + chr8_2:59246495-59246514 Msa1258100:intron 45.0%
GTTAGAAGCTCGTCCCAATT+GGG + chr8_2:59246559-59246578 Msa1258100:intron 45.0%
GGGTAACATTGAGGATGCTT+TGG + chr8_2:59246949-59246968 Msa1258100:CDS 45.0%
!!! ATTTTTCTCTGGTGGTGGTG+AGG + chr8_2:59247295-59247314 Msa1258100:intron 45.0%
TTTATGATTCTCCGAGGACG+AGG + chr8_2:59247491-59247510 Msa1258100:intron 45.0%
!!! TCCTTTTGCTGTTGAGTTGG+TGG + chr8_2:59247616-59247635 Msa1258100:intron 45.0%
TCCACCAACTCAACAGCAAA+AGG - chr8_2:59247620-59247639 None:intergenic 45.0%
AAGAGAAGGAAAATGGGGTG+TGG + chr8_2:59247707-59247726 Msa1258100:intron 45.0%
GGGAATTCACCCAATAAGAG+AGG - chr8_2:59247856-59247875 None:intergenic 45.0%
! CTTTGTGGTTAGTCCCTTCT+AGG + chr8_2:59247999-59248018 Msa1258100:intron 45.0%
!! TTCTTTTGCTCTTCTGAGGG+AGG - chr8_2:59248210-59248229 None:intergenic 45.0%
AATTGCGGCTTAAGCTGACA+AGG - chr8_2:59248874-59248893 None:intergenic 45.0%
GTCAGCTTAAGCCGCAATTA+CGG + chr8_2:59248875-59248894 Msa1258100:three_prime_UTR 45.0%
TCAGCTTAAGCCGCAATTAC+GGG + chr8_2:59248876-59248895 Msa1258100:three_prime_UTR 45.0%
GCCAAACCCTTATCAAGTGA+AGG - chr8_2:59249060-59249079 None:intergenic 45.0%
!! TATATATATATATATATTCA+AGG - chr8_2:59243733-59243752 None:intergenic 5.0%
!!! GAGAGAGGGTTTTGGGATTG+TGG + chr8_2:59243344-59243363 Msa1258100:five_prime_UTR 50.0%
!! AAGAAGGGGGTGTTGAAGAG+AGG - chr8_2:59243455-59243474 None:intergenic 50.0%
AGAGGAAGAAAGGGCGAGAA+AGG - chr8_2:59243500-59243519 None:intergenic 50.0%
! CGAGCGCTGTAATTGAAGAG+AGG - chr8_2:59243523-59243542 None:intergenic 50.0%
GCTTCCTCAGCTTCAGATTC+TGG + chr8_2:59243567-59243586 Msa1258100:CDS 50.0%
! GTTCCCAGAATCTGAAGCTG+AGG - chr8_2:59243574-59243593 None:intergenic 50.0%
TCAGGTAAAAGCTACGGTCC+AGG - chr8_2:59244087-59244106 None:intergenic 50.0%
GTACTCCAACTACCAGGTGT+TGG + chr8_2:59244442-59244461 Msa1258100:intron 50.0%
TACCAACACCTTGTGGTTGC+AGG + chr8_2:59244582-59244601 Msa1258100:intron 50.0%
TACCTGCAACCACAAGGTGT+TGG - chr8_2:59244587-59244606 None:intergenic 50.0%
AGAGGGCAAGAATATCTCGC+TGG + chr8_2:59244751-59244770 Msa1258100:intron 50.0%
GGGCAAGGATTTAAGAACGG+TGG - chr8_2:59245057-59245076 None:intergenic 50.0%
GTGTAGCAGAGAGGTAACAG+AGG - chr8_2:59245204-59245223 None:intergenic 50.0%
TCACTCACTGTGTAGCAGAG+AGG - chr8_2:59245213-59245232 None:intergenic 50.0%
GGAGCGGTATTCTGTTAGGA+TGG + chr8_2:59245727-59245746 Msa1258100:intron 50.0%
TGAACACCAAGGTCGACATG+CGG + chr8_2:59245977-59245996 Msa1258100:CDS 50.0%
ATTGAACCGCATGTCGACCT+TGG - chr8_2:59245986-59246005 None:intergenic 50.0%
GTCGACATGCGGTTCAATGT+TGG + chr8_2:59245988-59246007 Msa1258100:CDS 50.0%
GTTGAGTCATGGCGTAGTAG+AGG + chr8_2:59246155-59246174 Msa1258100:intron 50.0%
GGGACGAGCTTCTAACGTAT+AGG - chr8_2:59246555-59246574 None:intergenic 50.0%
CGTTAGAAGCTCGTCCCAAT+TGG + chr8_2:59246558-59246577 Msa1258100:intron 50.0%
GGATGCTTTGGCAAAGCTTC+AGG + chr8_2:59246961-59246980 Msa1258100:CDS 50.0%
CTAGGGGGAAATTGCAGCTT+AGG + chr8_2:59247381-59247400 Msa1258100:intron 50.0%
!! TTTTGCTCTTCTGAGGGAGG+TGG - chr8_2:59248207-59248226 None:intergenic 50.0%
GAGACGTTTGTGCTCTCCTA+TGG - chr8_2:59248398-59248417 None:intergenic 50.0%
TTACGGGAAGTCAACAACCC+TGG + chr8_2:59248915-59248934 Msa1258100:three_prime_UTR 50.0%
TACGGGAAGTCAACAACCCT+GGG + chr8_2:59248916-59248935 Msa1258100:three_prime_UTR 50.0%
!!! GGGTTTTGGGATTGTGGACG+TGG + chr8_2:59243350-59243369 Msa1258100:five_prime_UTR 55.0%
AGCGCATCGAATTGCAGTGG+CGG - chr8_2:59243550-59243569 None:intergenic 55.0%
! GGAAGCGCATCGAATTGCAG+TGG - chr8_2:59243553-59243572 None:intergenic 55.0%
AGTATCCTCTCGGCTTTCGC+AGG + chr8_2:59243599-59243618 Msa1258100:CDS 55.0%
CGGCTTCTTGGAGAAGCTCA+TGG - chr8_2:59243626-59243645 None:intergenic 55.0%
TTTGCCAGAAGTGGAGGACC+TGG + chr8_2:59243824-59243843 Msa1258100:CDS 55.0%
TTGCCAGAAGTGGAGGACCT+GGG + chr8_2:59243825-59243844 Msa1258100:CDS 55.0%
GGATGACAGGTTTGGCAGCT+TGG + chr8_2:59244928-59244947 Msa1258100:intron 55.0%
GAAATAGGAACGACGCGGAG+CGG + chr8_2:59245711-59245730 Msa1258100:intron 55.0%
ACGCGGAGCGGTATTCTGTT+AGG + chr8_2:59245723-59245742 Msa1258100:intron 55.0%
GAGGCAACTGCAGCCCAATT+GGG - chr8_2:59246575-59246594 None:intergenic 55.0%
TGAGGCAACTGCAGCCCAAT+TGG - chr8_2:59246576-59246595 None:intergenic 55.0%
!! TTCTCTGGTGGTGGTGAGGT+TGG + chr8_2:59247299-59247318 Msa1258100:intron 55.0%
!! TCTCTGGTGGTGGTGAGGTT+GGG + chr8_2:59247300-59247319 Msa1258100:intron 55.0%
CACTTCTGTAGGGCTGCCAT+AGG + chr8_2:59248379-59248398 Msa1258100:intron 55.0%
GCGCATCGAATTGCAGTGGC+GGG - chr8_2:59243549-59243568 None:intergenic 60.0%
ATGGACCTGCGAAAGCCGAG+AGG - chr8_2:59243607-59243626 None:intergenic 60.0%
TGCCAGAAGTGGAGGACCTG+GGG + chr8_2:59243826-59243845 Msa1258100:CDS 60.0%
! GCTCTTCTGAGGGAGGTGGT+GGG - chr8_2:59248203-59248222 None:intergenic 60.0%
! TGCTCTTCTGAGGGAGGTGG+TGG - chr8_2:59248204-59248223 None:intergenic 60.0%
GCCAGAAGTGGAGGACCTGG+GGG + chr8_2:59243827-59243846 Msa1258100:CDS 65.0%
ACCCCCAGGTCCTCCACTTC+TGG - chr8_2:59243831-59243850 None:intergenic 65.0%
!! CTGGTGGTGGTGAGGTTGGG+AGG + chr8_2:59247303-59247322 Msa1258100:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 59243312 59249210 59243312 ID=Msa1258100;Name=Msa1258100
chr8_2 mRNA 59243312 59249210 59243312 ID=Msa1258100-mRNA-1;Parent=Msa1258100;Name=Msa1258100-mRNA-1;_AED=0.24;_eAED=0.24;_QI=84|1|1|1|0.85|0.75|8|621|235
chr8_2 exon 59243312 59243699 59243312 ID=Msa1258100-mRNA-1:exon:18352;Parent=Msa1258100-mRNA-1
chr8_2 exon 59243807 59243866 59243807 ID=Msa1258100-mRNA-1:exon:18353;Parent=Msa1258100-mRNA-1
chr8_2 exon 59245977 59246059 59245977 ID=Msa1258100-mRNA-1:exon:18354;Parent=Msa1258100-mRNA-1
chr8_2 exon 59246796 59246860 59246796 ID=Msa1258100-mRNA-1:exon:18355;Parent=Msa1258100-mRNA-1
chr8_2 exon 59246949 59246982 59246949 ID=Msa1258100-mRNA-1:exon:18356;Parent=Msa1258100-mRNA-1
chr8_2 exon 59248174 59248244 59248174 ID=Msa1258100-mRNA-1:exon:18357;Parent=Msa1258100-mRNA-1
chr8_2 exon 59248390 59248520 59248390 ID=Msa1258100-mRNA-1:exon:18358;Parent=Msa1258100-mRNA-1
chr8_2 exon 59248630 59249210 59248630 ID=Msa1258100-mRNA-1:exon:18359;Parent=Msa1258100-mRNA-1
chr8_2 five_prime_UTR 59243312 59243395 59243312 ID=Msa1258100-mRNA-1:five_prime_utr;Parent=Msa1258100-mRNA-1
chr8_2 CDS 59243396 59243699 59243396 ID=Msa1258100-mRNA-1:cds;Parent=Msa1258100-mRNA-1
chr8_2 CDS 59243807 59243866 59243807 ID=Msa1258100-mRNA-1:cds;Parent=Msa1258100-mRNA-1
chr8_2 CDS 59245977 59246059 59245977 ID=Msa1258100-mRNA-1:cds;Parent=Msa1258100-mRNA-1
chr8_2 CDS 59246796 59246860 59246796 ID=Msa1258100-mRNA-1:cds;Parent=Msa1258100-mRNA-1
chr8_2 CDS 59246949 59246982 59246949 ID=Msa1258100-mRNA-1:cds;Parent=Msa1258100-mRNA-1
chr8_2 CDS 59248174 59248244 59248174 ID=Msa1258100-mRNA-1:cds;Parent=Msa1258100-mRNA-1
chr8_2 CDS 59248390 59248480 59248390 ID=Msa1258100-mRNA-1:cds;Parent=Msa1258100-mRNA-1
chr8_2 three_prime_UTR 59248481 59248520 59248481 ID=Msa1258100-mRNA-1:three_prime_utr;Parent=Msa1258100-mRNA-1
chr8_2 three_prime_UTR 59248630 59249210 59248630 ID=Msa1258100-mRNA-1:three_prime_utr;Parent=Msa1258100-mRNA-1
Gene Sequence

>Msa1258100

ATGTATGGTATGGCTTCAACAACCACTAGAATGGTGAAAGGAATATTGCTATTACACCTCTCTTCAACACCCCCTTCTTCTCTTCTTCGCATTACTCGCGACCTTTCTCGCCCTTTCTTCCTCTCCTCTCTTCAATTACAGCGCTCGCATCCCGCCACTGCAATTCGATGCGCTTCCTCAGCTTCAGATTCTGGGAACAACAAAGTATCCTCTCGGCTTTCGCAGGTCCATGAGCTTCTCCAAGAAGCCGAACATCGATCTATCTCCGCTGATTACAACGCCTCCATTCCTAAAATCACTTTGGATCATGTTACTGTGAATTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAGTGAACACCAAGGTCGACATGCGGTTCAATGTTGGAAAGGCACATTGGCTAAGTGAAAGGGTCAGGGAGAAGATTATGCAAATGGAGAAAAATCGTATGAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACACAGAAGGGTAACATTGAGGATGCTTTGGCAAAGCTTCAGGAAATCATTGATGCAGCATCTTATGTCCCACCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCTAAGTTGGCTGCCATAGGAGAGCACAAACGTCTCAAAAGCAAGAAGGTGCAATCAGATAAGAAAGCGCAAAGAAGAAGTAAAAGTAGTTGGGACTAA

Protein sequence

>Msa1258100

MYGMASTTTRMVKGILLLHLSSTPPSSLLRITRDLSRPFFLSSLQLQRSHPATAIRCASSASDSGNNKVSSRLSQVHELLQEAEHRSISADYNASIPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVGKAHWLSERVREKIMQMEKNRMNKDGELVISSTKTRTQKGNIEDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD*