AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0235080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0235080 MtrunA17_Chr2g0283411 96.708 243 8 0 1 243 1 243 2.43e-180 494
Msa0235080 MtrunA17_Chr2g0283421 84.298 242 36 1 2 243 3 242 3.01e-156 433
Msa0235080 MtrunA17_Chr2g0283391 63.861 202 56 4 39 239 1 186 3.20e-80 240
Msa0235080 MtrunA17_Chr4g0059001 45.249 221 112 2 25 242 51 265 3.97e-58 185
Msa0235080 MtrunA17_Chr7g0242461 41.981 212 113 3 4 215 6 207 3.52e-54 175
Msa0235080 MtrunA17_Chr4g0006731 38.136 236 134 4 4 235 6 233 8.52e-52 169
Msa0235080 MtrunA17_Chr7g0242451 38.075 239 134 4 4 238 6 234 1.41e-50 165
Msa0235080 MtrunA17_Chr7g0242401 38.318 214 122 4 2 215 31 234 9.83e-48 159
Msa0235080 MtrunA17_Chr7g0242431 37.850 214 123 4 2 215 30 233 5.32e-46 154
Msa0235080 MtrunA17_Chr7g0242391 34.694 245 140 5 4 239 2 235 1.14e-43 148
Msa0235080 MtrunA17_Chr7g0242411 37.089 213 118 7 4 215 2 199 1.86e-43 147
Msa0235080 MtrunA17_Chr3g0113401 36.449 214 124 5 4 215 6 209 1.25e-42 145
Msa0235080 MtrunA17_Chr7g0242441 50.847 59 28 1 4 62 3 60 2.14e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0235080 AT5G45920.1 68.880 241 68 2 4 242 3 238 2.68e-122 348
Msa0235080 AT5G45920.4 68.880 241 68 2 4 242 3 238 2.68e-122 348
Msa0235080 AT5G45920.2 72.043 186 45 2 4 187 3 183 1.97e-96 280
Msa0235080 AT5G45920.3 72.043 186 45 2 4 187 3 183 1.97e-96 280
Msa0235080 AT5G62930.1 52.066 242 107 2 4 242 2 237 2.30e-83 249
Msa0235080 AT5G62930.2 52.066 242 107 2 4 242 28 263 8.18e-83 248
Msa0235080 AT5G62930.3 49.438 178 87 1 68 242 2 179 8.28e-54 172
Msa0235080 AT2G38180.1 38.627 233 129 4 4 232 6 228 1.02e-47 160
Msa0235080 AT3G11210.1 35.246 244 139 6 4 241 6 236 1.62e-45 153

Find 71 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTACAGAAATGCCTTTA+AGG 0.118994 2_2:-7820431 None:intergenic
GCAGCTTCATTAGTCCTTTC+AGG 0.209931 2_2:-7819903 None:intergenic
TGACCCTAATGACCCCTTAA+AGG 0.261070 2_2:+7820417 Msa0235080:CDS
GTCAGGGAACTGTTGCATTT+TGG 0.294369 2_2:-7819994 None:intergenic
CTCCATTGTCTCCTTCTTCA+AGG 0.304012 2_2:+7818607 Msa0235080:CDS
AATGCCTTTAAGGGGTCATT+AGG 0.307170 2_2:-7820421 None:intergenic
TTAGTCATGTTTGAAAGAAA+TGG 0.322849 2_2:-7817776 None:intergenic
TCCTTTGATGTTGGAGGATG+GGG 0.334235 2_2:+7817842 Msa0235080:CDS
TACTACAGAAATGCCTTTAA+GGG 0.399937 2_2:-7820430 None:intergenic
CAAAGCAATCGGAGCAGTTT+CGG 0.402911 2_2:-7818492 None:intergenic
ATGCCTTTAAGGGGTCATTA+GGG 0.414468 2_2:-7820420 None:intergenic
GTCCTTTCAGGAAGACCCTC+TGG 0.415276 2_2:-7819891 None:intergenic
CTGTCACCGCCCTGTGACAC+AGG 0.417724 2_2:-7818464 None:intergenic
CCCTCTGGATTATTCTCAAA+TGG 0.419053 2_2:-7819876 None:intergenic
TTCTTTCAAACATGACTAAG+AGG 0.439390 2_2:+7817780 Msa0235080:exon
ATATTCCTTACATTGATCTC+TGG 0.444800 2_2:+7819970 Msa0235080:CDS
GAGTCGTGCAACTTCATCAA+TGG 0.457432 2_2:-7819717 None:intergenic
TTGAAAAGCAGAGCATCTAC+TGG 0.476943 2_2:-7818549 None:intergenic
ATCCTTTGATGTTGGAGGAT+GGG 0.480890 2_2:+7817841 Msa0235080:CDS
AAATGCAACAGTTCCCTGAC+TGG 0.492869 2_2:+7819997 Msa0235080:CDS
ATGAGGATGACTTTACTTGT+CGG 0.494758 2_2:-7819683 None:intergenic
AGTCGTGCAACTTCATCAAT+GGG 0.507323 2_2:-7819716 None:intergenic
AAGAAAACAGTCAAAGCAAT+CGG 0.513354 2_2:-7818503 None:intergenic
CAGGCAGATGTGGTGCTAAG+AGG 0.513358 2_2:+7818389 Msa0235080:intron
ACTGAGGAATCCTTTGATGT+TGG 0.516117 2_2:+7817833 Msa0235080:CDS
AGGCAGATGTGGTGCTAAGA+GGG 0.519656 2_2:+7818390 Msa0235080:intron
CAACACGAGGTGGGCACTGA+AGG 0.520803 2_2:+7818424 Msa0235080:CDS
TTGATGAAGTTGCACGACTC+AGG 0.521821 2_2:+7819720 Msa0235080:CDS
CAATGGGAGGAGGAGTTATG+AGG 0.526221 2_2:-7819700 None:intergenic
AATCCTTTGATGTTGGAGGA+TGG 0.530232 2_2:+7817840 Msa0235080:CDS
TTGGTCCAGAGATCAATGTA+AGG 0.532044 2_2:-7819975 None:intergenic
TGAGAATGTAGTTATTGTAG+TGG 0.537575 2_2:+7817697 Msa0235080:five_prime_UTR
GAGGAATCCTTTGATGTTGG+AGG 0.547556 2_2:+7817836 Msa0235080:CDS
TTCTCCTTGTATTCATGTAG+AGG 0.550295 2_2:-7818578 None:intergenic
ATCCAGAGGGTCTTCCTGAA+AGG 0.553423 2_2:+7819889 Msa0235080:CDS
GTGTCACAGGGCGGTGACAG+TGG 0.555563 2_2:+7818467 Msa0235080:CDS
GTGGTGCTAAGAGGGTATAG+TGG 0.556252 2_2:+7818398 Msa0235080:CDS
TAGGGTCAATATCAGATACA+AGG 0.556300 2_2:-7820402 None:intergenic
CCTTTGAATTTCAGAAGCGA+TGG 0.564667 2_2:+7819660 Msa0235080:intron
ACCCCATCCTCCAACATCAA+AGG 0.571101 2_2:-7817843 None:intergenic
TCTCCTTGTATTCATGTAGA+GGG 0.573844 2_2:-7818577 None:intergenic
TGCCAACTATTTCTCACGCA+CGG 0.583852 2_2:+7817874 Msa0235080:CDS
TACCGTGCGTGAGAAATAGT+TGG 0.585214 2_2:-7817876 None:intergenic
TGTCCCTCTACATGAATACA+AGG 0.587200 2_2:+7818574 Msa0235080:CDS
GGTATGGGTTACCTTGAAGA+AGG 0.588405 2_2:-7818618 None:intergenic
TGGTGCTAAGAGGGTATAGT+GGG 0.591667 2_2:+7818399 Msa0235080:CDS
ATGTTTGAAAGAAATGGAAG+AGG 0.592455 2_2:-7817770 None:intergenic
GAAAGGACTAATGAAGCTGC+TGG 0.598460 2_2:+7819906 Msa0235080:CDS
GACGGTTTGCATCTAACTAA+CGG 0.606195 2_2:+7820295 Msa0235080:CDS
GCAACTTCATCAATGGGAGG+AGG 0.607044 2_2:-7819710 None:intergenic
ACTACAGAAATGCCTTTAAG+GGG 0.608956 2_2:-7820429 None:intergenic
TGAAAAGCAGAGCATCTACT+GGG 0.610569 2_2:-7818548 None:intergenic
TACCTTGAAGAAGGAGACAA+TGG 0.615115 2_2:-7818609 None:intergenic
AGGGTCAATATCAGATACAA+GGG 0.620846 2_2:-7820401 None:intergenic
AGAAGGAGACAATGGAGCAA+AGG 0.621194 2_2:-7818601 None:intergenic
TGTTTGAAAGAAATGGAAGA+GGG 0.624450 2_2:-7817769 None:intergenic
GAGGTGGGCACTGAAGGTGT+TGG 0.628300 2_2:+7818430 Msa0235080:CDS
GTAAGGAATATGACATTCAG+TGG 0.633665 2_2:-7819958 None:intergenic
CCATTTGAGAATAATCCAGA+GGG 0.637647 2_2:+7819876 Msa0235080:CDS
TGTCACCGCCCTGTGACACA+GGG 0.639199 2_2:-7818463 None:intergenic
TGCTAGAGCATGCATTGCTG+TGG 0.657710 2_2:+7819935 Msa0235080:CDS
GGGTCAATATCAGATACAAG+GGG 0.659677 2_2:-7820400 None:intergenic
TAACATGTAACAGGCAGATG+TGG 0.662178 2_2:+7818379 Msa0235080:intron
GTTTGCATCTAACTAACGGA+GGG 0.673924 2_2:+7820299 Msa0235080:CDS
TCCATTTGAGAATAATCCAG+AGG 0.677789 2_2:+7819875 Msa0235080:CDS
CGTGCAACTTCATCAATGGG+AGG 0.679277 2_2:-7819713 None:intergenic
GGTATAGTGGGTACAACACG+AGG 0.696277 2_2:+7818411 Msa0235080:CDS
TAGTGGGTACAACACGAGGT+GGG 0.715177 2_2:+7818415 Msa0235080:CDS
GGTTTGCATCTAACTAACGG+AGG 0.720069 2_2:+7820298 Msa0235080:CDS
ATAGTGGGTACAACACGAGG+TGG 0.732833 2_2:+7818414 Msa0235080:CDS
GGTCAATATCAGATACAAGG+GGG 0.748357 2_2:-7820399 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATCATATTACAATTT+GGG - chr2_2:7818033-7818052 None:intergenic 10.0%
!! AAATAAATCATATTACAATT+TGG - chr2_2:7818034-7818053 None:intergenic 10.0%
!!! ATATTTTTAATTTCAATTCT+AGG + chr2_2:7819599-7819618 Msa0235080:intron 10.0%
!! TATAAACAAAACATATAATG+TGG - chr2_2:7817973-7817992 None:intergenic 15.0%
!! TGAATAAAATTAGAGTTTAA+TGG + chr2_2:7818652-7818671 Msa0235080:intron 15.0%
!! GAATAAAATTAGAGTTTAAT+GGG + chr2_2:7818653-7818672 Msa0235080:intron 15.0%
!! TTAAACATATAATTCTATAG+AGG + chr2_2:7819811-7819830 Msa0235080:intron 15.0%
!! ATATCATTATTTAATGCATA+TGG + chr2_2:7820228-7820247 Msa0235080:intron 15.0%
!! TATGATTTGATATGAATATA+CGG + chr2_2:7820251-7820270 Msa0235080:intron 15.0%
!! AAAATCTAAAAACAGAATGT+GGG - chr2_2:7818289-7818308 None:intergenic 20.0%
!! TAAAATCTAAAAACAGAATG+TGG - chr2_2:7818290-7818309 None:intergenic 20.0%
!!! AAGTTTGAATCTTTTTGTAA+TGG + chr2_2:7818315-7818334 Msa0235080:intron 20.0%
!!! AGTTTGAATCTTTTTGTAAT+GGG + chr2_2:7818316-7818335 Msa0235080:intron 20.0%
!!! AATTTTATTCAAACTCTGTA+CGG - chr2_2:7818643-7818662 None:intergenic 20.0%
!! TTATCCTTAAATGTATATGT+AGG + chr2_2:7819557-7819576 Msa0235080:intron 20.0%
!! TATACCTACATATACATTTA+AGG - chr2_2:7819564-7819583 None:intergenic 20.0%
!! AATTATACCATTTATACAAG+AGG - chr2_2:7819625-7819644 None:intergenic 20.0%
!! ACTGGAAAAAAGTTTATTTA+AGG + chr2_2:7820015-7820034 Msa0235080:CDS 20.0%
! TTAGTCATGTTTGAAAGAAA+TGG - chr2_2:7817779-7817798 None:intergenic 25.0%
! TCACCAAAAAGATATATTTG+TGG - chr2_2:7817806-7817825 None:intergenic 25.0%
!! GTTTGAATCTTTTTGTAATG+GGG + chr2_2:7818317-7818336 Msa0235080:intron 25.0%
!!! TCTTTTGAAAAGGATAAATG+AGG + chr2_2:7818348-7818367 Msa0235080:intron 25.0%
!! ATTTTATTCAAACTCTGTAC+GGG - chr2_2:7818642-7818661 None:intergenic 25.0%
! AAGAACAATGATCCTTTATT+GGG - chr2_2:7818736-7818755 None:intergenic 25.0%
! AAAGAACAATGATCCTTTAT+TGG - chr2_2:7818737-7818756 None:intergenic 25.0%
!!! AAAATAGTTTTGATCTCTTG+TGG + chr2_2:7818790-7818809 Msa0235080:intron 25.0%
! TTATAATGTTTGTAAAGCTG+TGG + chr2_2:7818996-7819015 Msa0235080:intron 25.0%
! AATTTGGAGGTTAATACAAT+AGG + chr2_2:7819081-7819100 Msa0235080:intron 25.0%
! TATTATTGATCATACAGTAG+TGG - chr2_2:7819136-7819155 None:intergenic 25.0%
! AATTATGTTATCAGTTGGTT+TGG + chr2_2:7819340-7819359 Msa0235080:intron 25.0%
! ATCTTTGATCCTTAAAGAAA+GGG - chr2_2:7819447-7819466 None:intergenic 25.0%
! TATCTTTGATCCTTAAAGAA+AGG - chr2_2:7819448-7819467 None:intergenic 25.0%
! TCTGCTTATAACATTCTTAA+AGG + chr2_2:7819468-7819487 Msa0235080:intron 25.0%
!!! AATAAACTTTTTTCCAGTCA+GGG - chr2_2:7820013-7820032 None:intergenic 25.0%
!!! AAATAAACTTTTTTCCAGTC+AGG - chr2_2:7820014-7820033 None:intergenic 25.0%
!! TTTACCTTCTTTGTTTATCT+TGG + chr2_2:7820050-7820069 Msa0235080:intron 25.0%
TGAGAATGTAGTTATTGTAG+TGG + chr2_2:7817697-7817716 Msa0235080:five_prime_UTR 30.0%
TGTTTGAAAGAAATGGAAGA+GGG - chr2_2:7817772-7817791 None:intergenic 30.0%
ATGTTTGAAAGAAATGGAAG+AGG - chr2_2:7817773-7817792 None:intergenic 30.0%
TTCTTTCAAACATGACTAAG+AGG + chr2_2:7817780-7817799 Msa0235080:exon 30.0%
! AGGCCACAAATATATCTTTT+TGG + chr2_2:7817800-7817819 Msa0235080:CDS 30.0%
AAAGCAAAACAAAGCAAGAA+TGG - chr2_2:7817906-7817925 None:intergenic 30.0%
! TTTATTAGTCTCATCGTGTT+AGG + chr2_2:7818002-7818021 Msa0235080:intron 30.0%
GTTGACATTGAGTTTATAAG+TGG + chr2_2:7818082-7818101 Msa0235080:intron 30.0%
!! GGTTTGTGTTTCTTTTGAAA+AGG + chr2_2:7818338-7818357 Msa0235080:intron 30.0%
GTTTGTTTGTAACATGTAAC+AGG + chr2_2:7818370-7818389 Msa0235080:intron 30.0%
AAGAAAACAGTCAAAGCAAT+CGG - chr2_2:7818506-7818525 None:intergenic 30.0%
! ATTGCTTTGACTGTTTTCTT+TGG + chr2_2:7818506-7818525 Msa0235080:CDS 30.0%
! TTGCTTTGACTGTTTTCTTT+GGG + chr2_2:7818507-7818526 Msa0235080:CDS 30.0%
AAAGGATCATTGTTCTTTAG+TGG + chr2_2:7818739-7818758 Msa0235080:intron 30.0%
CACATTCTAATAATGTTGCA+TGG + chr2_2:7818919-7818938 Msa0235080:intron 30.0%
ACAATAGGTGATGTTAAATG+TGG + chr2_2:7819096-7819115 Msa0235080:intron 30.0%
AACTGATAACATAATTGCAC+AGG - chr2_2:7819336-7819355 None:intergenic 30.0%
TGTGCAATTATGTTATCAGT+TGG + chr2_2:7819335-7819354 Msa0235080:intron 30.0%
!!! AAGTTTTTTTTACACTTGCG+TGG + chr2_2:7819492-7819511 Msa0235080:intron 30.0%
ATGAACATTGATCAACCTAT+GGG - chr2_2:7819518-7819537 None:intergenic 30.0%
ATATTCCTTACATTGATCTC+TGG + chr2_2:7819970-7819989 Msa0235080:CDS 30.0%
TAAGCCAAGATAAACAAAGA+AGG - chr2_2:7820057-7820076 None:intergenic 30.0%
CATAACTCAAGTCACATATA+TGG - chr2_2:7820171-7820190 None:intergenic 30.0%
ATAAAAAAGCTGAGAGATGA+AGG + chr2_2:7820346-7820365 Msa0235080:CDS 30.0%
GAGTTTATAAGTGGTGAAAC+TGG + chr2_2:7818091-7818110 Msa0235080:intron 35.0%
ATTCATTGGAATCACGCATT+CGG + chr2_2:7818123-7818142 Msa0235080:intron 35.0%
AGTGTCTGATCTTGATCAAA+CGG + chr2_2:7818200-7818219 Msa0235080:intron 35.0%
! TGCTTTGACTGTTTTCTTTG+GGG + chr2_2:7818508-7818527 Msa0235080:CDS 35.0%
TCTCCTTGTATTCATGTAGA+GGG - chr2_2:7818580-7818599 None:intergenic 35.0%
TTCTCCTTGTATTCATGTAG+AGG - chr2_2:7818581-7818600 None:intergenic 35.0%
ACTGTGTTGAAACCCAATAA+AGG + chr2_2:7818721-7818740 Msa0235080:intron 35.0%
TGGATTTGATAAGTGTGCTT+TGG + chr2_2:7818810-7818829 Msa0235080:intron 35.0%
AAGCATGGAATCAAACTCTT+TGG - chr2_2:7819165-7819184 None:intergenic 35.0%
! TTTGATTCCATGCTTTTCTG+TGG + chr2_2:7819170-7819189 Msa0235080:intron 35.0%
! TTGATTCCATGCTTTTCTGT+GGG + chr2_2:7819171-7819190 Msa0235080:intron 35.0%
! AGAAAGAAGGCATGATGTTT+AGG - chr2_2:7819295-7819314 None:intergenic 35.0%
AGTAATGGCACAAAGAAAGA+AGG - chr2_2:7819308-7819327 None:intergenic 35.0%
! TCTTTCTTTGTGCCATTACT+TGG + chr2_2:7819308-7819327 Msa0235080:intron 35.0%
TCATGTGAGCTGTTAAGTAT+AGG + chr2_2:7819365-7819384 Msa0235080:intron 35.0%
AAGAATGGTCCCTTTCTTTA+AGG + chr2_2:7819435-7819454 Msa0235080:intron 35.0%
CATGAACATTGATCAACCTA+TGG - chr2_2:7819519-7819538 None:intergenic 35.0%
TTCTAGGCCTCTTGTATAAA+TGG + chr2_2:7819615-7819634 Msa0235080:intron 35.0%
ATGAGGATGACTTTACTTGT+CGG - chr2_2:7819686-7819705 None:intergenic 35.0%
!! CGACTCAGGTATTGTTTTAT+TGG + chr2_2:7819734-7819753 Msa0235080:intron 35.0%
TCCATTTGAGAATAATCCAG+AGG + chr2_2:7819875-7819894 Msa0235080:CDS 35.0%
CCATTTGAGAATAATCCAGA+GGG + chr2_2:7819876-7819895 Msa0235080:CDS 35.0%
GTAAGGAATATGACATTCAG+TGG - chr2_2:7819961-7819980 None:intergenic 35.0%
AGGGTCAATATCAGATACAA+GGG - chr2_2:7820404-7820423 None:intergenic 35.0%
TAGGGTCAATATCAGATACA+AGG - chr2_2:7820405-7820424 None:intergenic 35.0%
!! TTTTGGTGACTCAATCACTG+AGG + chr2_2:7817817-7817836 Msa0235080:CDS 40.0%
ACTGAGGAATCCTTTGATGT+TGG + chr2_2:7817833-7817852 Msa0235080:CDS 40.0%
AATCCTTTGATGTTGGAGGA+TGG + chr2_2:7817840-7817859 Msa0235080:CDS 40.0%
ATCCTTTGATGTTGGAGGAT+GGG + chr2_2:7817841-7817860 Msa0235080:CDS 40.0%
ACTGGATTCCATGCATTCAT+TGG + chr2_2:7818109-7818128 Msa0235080:intron 40.0%
TTCATTGGAATCACGCATTC+GGG + chr2_2:7818124-7818143 Msa0235080:intron 40.0%
CTCAAATTGTCGACCACTTA+TGG - chr2_2:7818256-7818275 None:intergenic 40.0%
TAACATGTAACAGGCAGATG+TGG + chr2_2:7818379-7818398 Msa0235080:intron 40.0%
! TGAAAAGCAGAGCATCTACT+GGG - chr2_2:7818551-7818570 None:intergenic 40.0%
! TTGAAAAGCAGAGCATCTAC+TGG - chr2_2:7818552-7818571 None:intergenic 40.0%
TGTCCCTCTACATGAATACA+AGG + chr2_2:7818574-7818593 Msa0235080:CDS 40.0%
TACCTTGAAGAAGGAGACAA+TGG - chr2_2:7818612-7818631 None:intergenic 40.0%
TTCAAACTCTGTACGGGTAT+GGG - chr2_2:7818636-7818655 None:intergenic 40.0%
ATTCAAACTCTGTACGGGTA+TGG - chr2_2:7818637-7818656 None:intergenic 40.0%
! TAATGGGTATGCACACAATG+AGG + chr2_2:7818669-7818688 Msa0235080:intron 40.0%
AATGGGTATGCACACAATGA+GGG + chr2_2:7818670-7818689 Msa0235080:intron 40.0%
TTTGGTCGCGTATATATTGC+AGG + chr2_2:7818828-7818847 Msa0235080:intron 40.0%
GAGAACGAAAAGTTTCTCTC+TGG + chr2_2:7818971-7818990 Msa0235080:intron 40.0%
CAAATTCCTGAAATCCCACA+GGG - chr2_2:7819067-7819086 None:intergenic 40.0%
GTGATGTTAAATGTGGACTC+TGG + chr2_2:7819103-7819122 Msa0235080:intron 40.0%
GTACGAGATGCTTGTGTAAA+AGG + chr2_2:7819204-7819223 Msa0235080:intron 40.0%
ATTGCACAGGAACCAAGTAA+TGG - chr2_2:7819323-7819342 None:intergenic 40.0%
ATAGGCATGCATGTTAGCAA+TGG + chr2_2:7819383-7819402 Msa0235080:intron 40.0%
TAGGCATGCATGTTAGCAAT+GGG + chr2_2:7819384-7819403 Msa0235080:intron 40.0%
GGAAAACCAACCTCTACTTT+AGG + chr2_2:7819407-7819426 Msa0235080:intron 40.0%
TTCTTCCACTCCTAAAGTAG+AGG - chr2_2:7819420-7819439 None:intergenic 40.0%
! CTACTTTAGGAGTGGAAGAA+TGG + chr2_2:7819420-7819439 Msa0235080:intron 40.0%
!! CCATCGCTTCTGAAATTCAA+AGG - chr2_2:7819663-7819682 None:intergenic 40.0%
CCTTTGAATTTCAGAAGCGA+TGG + chr2_2:7819660-7819679 Msa0235080:intron 40.0%
AGTCGTGCAACTTCATCAAT+GGG - chr2_2:7819719-7819738 None:intergenic 40.0%
CCCTCTGGATTATTCTCAAA+TGG - chr2_2:7819879-7819898 None:intergenic 40.0%
TTGGTCCAGAGATCAATGTA+AGG - chr2_2:7819978-7819997 None:intergenic 40.0%
TGTTTACCGAAATGCAGTGA+CGG + chr2_2:7820277-7820296 Msa0235080:intron 40.0%
GACGGTTTGCATCTAACTAA+CGG + chr2_2:7820295-7820314 Msa0235080:CDS 40.0%
GTTTGCATCTAACTAACGGA+GGG + chr2_2:7820299-7820318 Msa0235080:CDS 40.0%
GGTCAATATCAGATACAAGG+GGG - chr2_2:7820402-7820421 None:intergenic 40.0%
GGGTCAATATCAGATACAAG+GGG - chr2_2:7820403-7820422 None:intergenic 40.0%
! ATGCCTTTAAGGGGTCATTA+GGG - chr2_2:7820423-7820442 None:intergenic 40.0%
! AATGCCTTTAAGGGGTCATT+AGG - chr2_2:7820424-7820443 None:intergenic 40.0%
GAGGAATCCTTTGATGTTGG+AGG + chr2_2:7817836-7817855 Msa0235080:CDS 45.0%
TCCTTTGATGTTGGAGGATG+GGG + chr2_2:7817842-7817861 Msa0235080:CDS 45.0%
! TGCCAACTATTTCTCACGCA+CGG + chr2_2:7817874-7817893 Msa0235080:CDS 45.0%
TACCGTGCGTGAGAAATAGT+TGG - chr2_2:7817879-7817898 None:intergenic 45.0%
GCGTGATTCCAATGAATGCA+TGG - chr2_2:7818120-7818139 None:intergenic 45.0%
!! TCTTCGCATTCAGGTATTGG+TGG - chr2_2:7818226-7818245 None:intergenic 45.0%
AATACCTGAATGCGAAGAGC+CGG + chr2_2:7818228-7818247 Msa0235080:intron 45.0%
TTGTCGACCACTTATGGATC+CGG - chr2_2:7818250-7818269 None:intergenic 45.0%
! TGGTGCTAAGAGGGTATAGT+GGG + chr2_2:7818399-7818418 Msa0235080:CDS 45.0%
! AGAGTTTTCCCTGTGTCACA+GGG + chr2_2:7818455-7818474 Msa0235080:CDS 45.0%
CAAAGCAATCGGAGCAGTTT+CGG - chr2_2:7818495-7818514 None:intergenic 45.0%
AGAAGGAGACAATGGAGCAA+AGG - chr2_2:7818604-7818623 None:intergenic 45.0%
CTCCATTGTCTCCTTCTTCA+AGG + chr2_2:7818607-7818626 Msa0235080:CDS 45.0%
! GGTATGGGTTACCTTGAAGA+AGG - chr2_2:7818621-7818640 None:intergenic 45.0%
GTATGCACACAATGAGGGAT+TGG + chr2_2:7818675-7818694 Msa0235080:intron 45.0%
! AGGGATTGGCACAGATTATC+AGG + chr2_2:7818689-7818708 Msa0235080:intron 45.0%
TTGTTCTTTAGTGGCACAGC+AGG + chr2_2:7818748-7818767 Msa0235080:intron 45.0%
ACGGCTATAGTGTAGGACTA+GGG + chr2_2:7819027-7819046 Msa0235080:intron 45.0%
CCAAATTCCTGAAATCCCAC+AGG - chr2_2:7819068-7819087 None:intergenic 45.0%
CCTGTGGGATTTCAGGAATT+TGG + chr2_2:7819065-7819084 Msa0235080:intron 45.0%
GTGGGATTTCAGGAATTTGG+AGG + chr2_2:7819068-7819087 Msa0235080:intron 45.0%
! TCCATGCTTTTCTGTGGGAA+TGG + chr2_2:7819176-7819195 Msa0235080:intron 45.0%
TCCATTCCCACAGAAAAGCA+TGG - chr2_2:7819180-7819199 None:intergenic 45.0%
! CTTTTCTGTGGGAATGGAGT+TGG + chr2_2:7819182-7819201 Msa0235080:intron 45.0%
AGGCATGCATGTTAGCAATG+GGG + chr2_2:7819385-7819404 Msa0235080:intron 45.0%
! ACCAACCTCTACTTTAGGAG+TGG + chr2_2:7819412-7819431 Msa0235080:intron 45.0%
TCCACTCCTAAAGTAGAGGT+TGG - chr2_2:7819416-7819435 None:intergenic 45.0%
GAGTCGTGCAACTTCATCAA+TGG - chr2_2:7819720-7819739 None:intergenic 45.0%
TTGATGAAGTTGCACGACTC+AGG + chr2_2:7819720-7819739 Msa0235080:CDS 45.0%
GCAGCTTCATTAGTCCTTTC+AGG - chr2_2:7819906-7819925 None:intergenic 45.0%
GAAAGGACTAATGAAGCTGC+TGG + chr2_2:7819906-7819925 Msa0235080:CDS 45.0%
! GTCAGGGAACTGTTGCATTT+TGG - chr2_2:7819997-7820016 None:intergenic 45.0%
AAATGCAACAGTTCCCTGAC+TGG + chr2_2:7819997-7820016 Msa0235080:CDS 45.0%
TGCAAACCGTCACTGCATTT+CGG - chr2_2:7820286-7820305 None:intergenic 45.0%
GGTTTGCATCTAACTAACGG+AGG + chr2_2:7820298-7820317 Msa0235080:CDS 45.0%
TGACCCTAATGACCCCTTAA+AGG + chr2_2:7820417-7820436 Msa0235080:CDS 45.0%
!!! AATAATAATTATTTTTCATT+TGG + chr2_2:7818858-7818877 Msa0235080:intron 5.0%
!! ATAAAAAAAATAAAAAAAAG+TGG - chr2_2:7819231-7819250 None:intergenic 5.0%
ACCCCATCCTCCAACATCAA+AGG - chr2_2:7817846-7817865 None:intergenic 50.0%
GGCTCTTCGCATTCAGGTAT+TGG - chr2_2:7818229-7818248 None:intergenic 50.0%
! AGGCAGATGTGGTGCTAAGA+GGG + chr2_2:7818390-7818409 Msa0235080:intron 50.0%
! GTGGTGCTAAGAGGGTATAG+TGG + chr2_2:7818398-7818417 Msa0235080:CDS 50.0%
!! GGTATAGTGGGTACAACACG+AGG + chr2_2:7818411-7818430 Msa0235080:CDS 50.0%
!! ATAGTGGGTACAACACGAGG+TGG + chr2_2:7818414-7818433 Msa0235080:CDS 50.0%
! TAGTGGGTACAACACGAGGT+GGG + chr2_2:7818415-7818434 Msa0235080:CDS 50.0%
! CAGAGTTTTCCCTGTGTCAC+AGG + chr2_2:7818454-7818473 Msa0235080:CDS 50.0%
TTCTTTAGTGGCACAGCAGG+AGG + chr2_2:7818751-7818770 Msa0235080:intron 50.0%
TAAAGCTGTGGCACAGTGCA+CGG + chr2_2:7819008-7819027 Msa0235080:intron 50.0%
ACAGTGCACGGCTATAGTGT+AGG + chr2_2:7819020-7819039 Msa0235080:intron 50.0%
CACGGCTATAGTGTAGGACT+AGG + chr2_2:7819026-7819045 Msa0235080:intron 50.0%
GGCATGCATGTTAGCAATGG+GGG + chr2_2:7819386-7819405 Msa0235080:intron 50.0%
TTTACACTTGCGTGGCCCAT+AGG + chr2_2:7819500-7819519 Msa0235080:intron 50.0%
CAATGGGAGGAGGAGTTATG+AGG - chr2_2:7819703-7819722 None:intergenic 50.0%
GCAACTTCATCAATGGGAGG+AGG - chr2_2:7819713-7819732 None:intergenic 50.0%
CGTGCAACTTCATCAATGGG+AGG - chr2_2:7819716-7819735 None:intergenic 50.0%
ATCCAGAGGGTCTTCCTGAA+AGG + chr2_2:7819889-7819908 Msa0235080:CDS 50.0%
TGCTAGAGCATGCATTGCTG+TGG + chr2_2:7819935-7819954 Msa0235080:CDS 50.0%
GATACAAGGGGGAGATCAAC+TGG - chr2_2:7820391-7820410 None:intergenic 50.0%
CGAAGAGCCGGATCCATAAG+TGG + chr2_2:7818240-7818259 Msa0235080:intron 55.0%
! CAGGCAGATGTGGTGCTAAG+AGG + chr2_2:7818389-7818408 Msa0235080:intron 55.0%
! GTTTTCCCTGTGTCACAGGG+CGG + chr2_2:7818458-7818477 Msa0235080:CDS 55.0%
ACATGGCCCTGTGGGATTTC+AGG + chr2_2:7819058-7819077 Msa0235080:intron 55.0%
GTCCTTTCAGGAAGACCCTC+TGG - chr2_2:7819894-7819913 None:intergenic 55.0%
GGATCCGGCTCTTCGCATTC+AGG - chr2_2:7818235-7818254 None:intergenic 60.0%
!! CAACACGAGGTGGGCACTGA+AGG + chr2_2:7818424-7818443 Msa0235080:CDS 60.0%
!! GAGGTGGGCACTGAAGGTGT+TGG + chr2_2:7818430-7818449 Msa0235080:CDS 60.0%
TGTCACCGCCCTGTGACACA+GGG - chr2_2:7818466-7818485 None:intergenic 60.0%
GGACTAGGGATGCACGCACA+TGG + chr2_2:7819041-7819060 Msa0235080:intron 60.0%
ATGCACGCACATGGCCCTGT+GGG + chr2_2:7819050-7819069 Msa0235080:intron 60.0%
CTGTCACCGCCCTGTGACAC+AGG - chr2_2:7818467-7818486 None:intergenic 65.0%
GTGTCACAGGGCGGTGACAG+TGG + chr2_2:7818467-7818486 Msa0235080:CDS 65.0%
GATGCACGCACATGGCCCTG+TGG + chr2_2:7819049-7819068 Msa0235080:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 7817678 7820450 7817678 ID=Msa0235080;Name=Msa0235080
chr2_2 mRNA 7817678 7820450 7817678 ID=Msa0235080-mRNA-1;Parent=Msa0235080;Name=Msa0235080-mRNA-1;_AED=0.39;_eAED=0.39;_QI=113|1|0.8|1|1|1|5|0|243
chr2_2 exon 7817678 7817895 7817678 ID=Msa0235080-mRNA-1:exon:3434;Parent=Msa0235080-mRNA-1
chr2_2 exon 7818392 7818628 7818392 ID=Msa0235080-mRNA-1:exon:3435;Parent=Msa0235080-mRNA-1
chr2_2 exon 7819674 7819741 7819674 ID=Msa0235080-mRNA-1:exon:3436;Parent=Msa0235080-mRNA-1
chr2_2 exon 7819872 7820036 7819872 ID=Msa0235080-mRNA-1:exon:3437;Parent=Msa0235080-mRNA-1
chr2_2 exon 7820294 7820450 7820294 ID=Msa0235080-mRNA-1:exon:3438;Parent=Msa0235080-mRNA-1
chr2_2 five_prime_UTR 7817678 7817790 7817678 ID=Msa0235080-mRNA-1:five_prime_utr;Parent=Msa0235080-mRNA-1
chr2_2 CDS 7817791 7817895 7817791 ID=Msa0235080-mRNA-1:cds;Parent=Msa0235080-mRNA-1
chr2_2 CDS 7818392 7818628 7818392 ID=Msa0235080-mRNA-1:cds;Parent=Msa0235080-mRNA-1
chr2_2 CDS 7819674 7819741 7819674 ID=Msa0235080-mRNA-1:cds;Parent=Msa0235080-mRNA-1
chr2_2 CDS 7819872 7820036 7819872 ID=Msa0235080-mRNA-1:cds;Parent=Msa0235080-mRNA-1
chr2_2 CDS 7820294 7820450 7820294 ID=Msa0235080-mRNA-1:cds;Parent=Msa0235080-mRNA-1
Gene Sequence

>Msa0235080

ATGACTAAGAGGCCACAAATATATCTTTTTGGTGACTCAATCACTGAGGAATCCTTTGATGTTGGAGGATGGGGTGCTTCTCTTGCCAACTATTTCTCACGCACGGCAGATGTGGTGCTAAGAGGGTATAGTGGGTACAACACGAGGTGGGCACTGAAGGTGTTGGACAGAGTTTTCCCTGTGTCACAGGGCGGTGACAGTGGAACCGAAACTGCTCCGATTGCTTTGACTGTTTTCTTTGGGGCTAATGACGCTTGTCTTCCCAGTAGATGCTCTGCTTTTCAACATGTCCCTCTACATGAATACAAGGAGAACCTTTGCTCCATTGTCTCCTTCTTCAAGAAGCGATGGCCGACAAGTAAAGTCATCCTCATAACTCCTCCTCCCATTGATGAAGTTGCACGACTCAGATATCCATTTGAGAATAATCCAGAGGGTCTTCCTGAAAGGACTAATGAAGCTGCTGGTGAATATGCTAGAGCATGCATTGCTGTGGCCACTGAATGTCATATTCCTTACATTGATCTCTGGACCAAAATGCAACAGTTCCCTGACTGGAAAAAAGTTTATTTAAGTGACGGTTTGCATCTAACTAACGGAGGGAATCAACTTGTATTTGAAGAAGTAATAAAAAAGCTGAGAGATGAAGGTTTGAGTCTAGAATCTATTCCAGTTGATCTCCCCCTTGTATCTGATATTGACCCTAATGACCCCTTAAAGGCATTTCTGTAG

Protein sequence

>Msa0235080

MTKRPQIYLFGDSITEESFDVGGWGASLANYFSRTADVVLRGYSGYNTRWALKVLDRVFPVSQGGDSGTETAPIALTVFFGANDACLPSRCSAFQHVPLHEYKENLCSIVSFFKKRWPTSKVILITPPPIDEVARLRYPFENNPEGLPERTNEAAGEYARACIAVATECHIPYIDLWTKMQQFPDWKKVYLSDGLHLTNGGNQLVFEEVIKKLRDEGLSLESIPVDLPLVSDIDPNDPLKAFL*