AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319710 MtrunA17_Chr2g0294391 93.284 134 9 0 45 178 180 313 1.70e-88 267
Msa0319710 MtrunA17_Chr2g0294391 95.652 46 2 0 175 220 380 425 2.17e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2_4:-19582631 Msa0319710:CDS
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2_4:-19582623 Msa0319710:CDS
AATATTACCTTGCACTTGTA+TGG 0.307186 2_4:+19584201 None:intergenic
ACATCTTATGCTGCCTTAGA+AGG 0.333220 2_4:-19584907 Msa0319710:five_prime_UTR
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2_4:+19583687 None:intergenic
GAAGAACTATGGCATGCTTT+AGG 0.338906 2_4:-19583937 Msa0319710:CDS
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2_4:-19583683 Msa0319710:CDS
GTGAAGATCTTTATCATCAT+TGG 0.352123 2_4:+19584865 None:intergenic
CGTCCGATGAGTGGAGATAT+TGG 0.364584 2_4:-19583538 Msa0319710:CDS
AGTCTGGTTTACACTCTTGC+TGG 0.381922 2_4:-19585118 Msa0319710:five_prime_UTR
GGCATACATGTTCAGATTGT+TGG 0.392739 2_4:-19582708 Msa0319710:intron
ATAGATTATAGACATTTAAC+AGG 0.392814 2_4:+19582579 None:intergenic
TTTGTGAAGTAGATTTCTCT+TGG 0.401255 2_4:+19584606 None:intergenic
TCATAACCTAAGGCCTTCTA+AGG 0.407933 2_4:+19584894 None:intergenic
TCTAAGGGAAGCTCTTGCTT+TGG 0.410450 2_4:-19582607 Msa0319710:CDS
GTAGACTGTTTGAAGAACTA+TGG 0.410606 2_4:-19583948 Msa0319710:CDS
TGAAGCAGCTCCACCATGTT+GGG 0.410865 2_4:+19582662 None:intergenic
GTCCGATGAGTGGAGATATT+GGG 0.417237 2_4:-19583537 Msa0319710:CDS
ATGCTGCCTTAGAAGGCCTT+AGG 0.425846 2_4:-19584900 Msa0319710:five_prime_UTR
AGGGAAGCTCTTGCTTTGGT+TGG 0.427363 2_4:-19582603 Msa0319710:CDS
TATTGGGAGAGGAGCGACTA+AGG 0.428903 2_4:-19583521 Msa0319710:CDS
TAGCATCAACATCATTTCTC+TGG 0.438762 2_4:+19584231 None:intergenic
TGGAATGAGATTGCATTAGC+AGG 0.444449 2_4:+19584626 None:intergenic
CTTGATTGAAACTTTGATGT+TGG 0.455698 2_4:-19582537 Msa0319710:three_prime_UTR
CAGGTTAGTTTACCTGATGT+TGG 0.458723 2_4:-19583756 Msa0319710:CDS
CAAAACTGGAAATCTCAGTC+TGG 0.489855 2_4:-19585134 None:intergenic
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2_4:+19582627 None:intergenic
ATTGTTGAATCTCCAACATC+AGG 0.494746 2_4:+19583744 None:intergenic
GTCATAACGGAGCGCTGCTA+TGG 0.513932 2_4:-19584434 Msa0319710:CDS
CAGTCCGATGGACAGTCCTC+GGG 0.520332 2_4:+19584674 None:intergenic
GTTGTGAGTGCTGTGAATGA+AGG 0.524665 2_4:-19584947 Msa0319710:five_prime_UTR
TAGAAACTTCAACTTATGGC+AGG 0.529444 2_4:-19583679 Msa0319710:intron
ACAGTCCGATGGACAGTCCT+CGG 0.535368 2_4:+19584673 None:intergenic
ACGGAGCGCTGCTATGGCTG+TGG 0.547245 2_4:-19584428 Msa0319710:CDS
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2_4:-19582622 Msa0319710:CDS
TTGAAGCAGCTCCACCATGT+TGG 0.555464 2_4:+19582661 None:intergenic
TCCACCATGTTGGGATTGCA+TGG 0.562511 2_4:+19582671 None:intergenic
CATGCAGGACGGAGTCATAA+CGG 0.567434 2_4:-19584447 Msa0319710:intron
TTTAGCCAATTGAACAGCAA+AGG 0.571345 2_4:+19583489 None:intergenic
GGAATGAGATTGCATTAGCA+GGG 0.583303 2_4:+19584627 None:intergenic
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2_4:-19583532 Msa0319710:CDS
TTAGACGGCCGTCCGATGAG+TGG 0.595300 2_4:-19583547 Msa0319710:CDS
TGATCCCGAGGACTGTCCAT+CGG 0.604988 2_4:-19584678 Msa0319710:CDS
CTTAACAGAATTTGATCCCG+AGG 0.610386 2_4:-19584690 Msa0319710:intron
TTGGCACTGATCATAACCTA+AGG 0.612491 2_4:+19584884 None:intergenic
CTCCCAATATCTCCACTCAT+CGG 0.614980 2_4:+19583535 None:intergenic
CAAGGGCGTGAACAGTCCGA+TGG 0.616851 2_4:+19584662 None:intergenic
CTGTATAAACTCAAGTTAGA+CGG 0.620531 2_4:-19583562 Msa0319710:intron
TAGAGATCCATACAAGTGCA+AGG 0.633756 2_4:-19584208 Msa0319710:intron
CTGGTTTACACTCTTGCTGG+AGG 0.640252 2_4:-19585115 Msa0319710:intron
AGATCCATGCAATCCCAACA+TGG 0.647702 2_4:-19582675 Msa0319710:CDS
CAATATCTCCACTCATCGGA+CGG 0.667049 2_4:+19583539 None:intergenic
TCCATGCAATCCCAACATGG+TGG 0.701127 2_4:-19582672 Msa0319710:CDS
TGTGAATGAAGGAATTGAAG+TGG 0.703438 2_4:-19584936 Msa0319710:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTAATCAAGTAATGAA+TGG - chr2_4:19583481-19583500 Msa0319710:intron 15.0%
!! TAAAACTTGTGATGTTTAAT+TGG - chr2_4:19583111-19583130 Msa0319710:intron 20.0%
!!! ATCCTACTTATTTTAACATA+GGG + chr2_4:19583204-19583223 None:intergenic 20.0%
!!! TATCCTACTTATTTTAACAT+AGG + chr2_4:19583205-19583224 None:intergenic 20.0%
!! TTAAATATAAGAAGAGTTGA+AGG + chr2_4:19583717-19583736 None:intergenic 20.0%
!! TTCAACTCTTCTTATATTTA+AGG - chr2_4:19583716-19583735 Msa0319710:CDS 20.0%
!! TCAACTCTTCTTATATTTAA+GGG - chr2_4:19583717-19583736 Msa0319710:CDS 20.0%
!!! TCAATTTGTTAAAAGAAACA+TGG + chr2_4:19583997-19584016 None:intergenic 20.0%
!! ATAGATTATAGACATTTAAC+AGG + chr2_4:19585011-19585030 None:intergenic 20.0%
! AATTCAAGAATTGGATTATG+TGG - chr2_4:19582575-19582594 Msa0319710:exon 25.0%
!! TTCAATAAGAACTGTTTTAC+GGG + chr2_4:19582758-19582777 None:intergenic 25.0%
!! GTTCAATAAGAACTGTTTTA+CGG + chr2_4:19582759-19582778 None:intergenic 25.0%
!! TATGCTTTTAATATTGATCC+AGG - chr2_4:19583288-19583307 Msa0319710:intron 25.0%
! TCAATAAATACTTAGCTTCA+AGG - chr2_4:19583768-19583787 Msa0319710:intron 25.0%
! ATTTACTATTGAAATGATCC+AGG - chr2_4:19583812-19583831 Msa0319710:intron 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG + chr2_4:19583903-19583922 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG - chr2_4:19583904-19583923 Msa0319710:intron 25.0%
! AAGAAACATGGAATAGAATT+TGG + chr2_4:19583985-19584004 None:intergenic 25.0%
!!! GGAAAAGATTTTAATGAGAT+AGG - chr2_4:19584265-19584284 Msa0319710:CDS 25.0%
! GACATGATATGAATCTAAAA+TGG - chr2_4:19584352-19584371 Msa0319710:intron 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG - chr2_4:19584518-19584537 Msa0319710:intron 25.0%
!! AATTTAGAACAGAAACAGAA+TGG + chr2_4:19584796-19584815 None:intergenic 25.0%
!!! TTTCTGTTCTAAATTTTCTG+TGG - chr2_4:19584801-19584820 Msa0319710:intron 25.0%
AACCAAGCAAATTCAAGAAT+TGG - chr2_4:19582566-19582585 Msa0319710:exon 30.0%
! ATCCAATTCTTGAATTTGCT+TGG + chr2_4:19582571-19582590 None:intergenic 30.0%
GTGAAGATCTTTATCATCAT+TGG + chr2_4:19582725-19582744 None:intergenic 30.0%
TTTGTGAAGTAGATTTCTCT+TGG + chr2_4:19582984-19583003 None:intergenic 30.0%
GTTAAAACCTTTAGTACTCT+TGG + chr2_4:19583027-19583046 None:intergenic 30.0%
TTTAATTGGATTGAACATGC+AGG - chr2_4:19583125-19583144 Msa0319710:intron 30.0%
!! ATTTTAACATAGGGACAAAC+TGG + chr2_4:19583195-19583214 None:intergenic 30.0%
GTCCCTATGTTAAAATAAGT+AGG - chr2_4:19583199-19583218 Msa0319710:intron 30.0%
! TTTTAATATTGATCCAGGAG+AGG - chr2_4:19583293-19583312 Msa0319710:intron 30.0%
AATATTACCTTGCACTTGTA+TGG + chr2_4:19583389-19583408 None:intergenic 30.0%
ATTAGAGTTCCTTAAGTACT+AGG - chr2_4:19583406-19583425 Msa0319710:intron 30.0%
CAGTTATATCCTAGTACTTA+AGG + chr2_4:19583418-19583437 None:intergenic 30.0%
! ATCAAGTAATGAATGGATTC+TGG - chr2_4:19583488-19583507 Msa0319710:intron 30.0%
TAGAAGGATGTATAGATACA+CGG + chr2_4:19583611-19583630 None:intergenic 30.0%
GTCTAACTTGAGTTTATACA+GGG + chr2_4:19584026-19584045 None:intergenic 30.0%
CTGTATAAACTCAAGTTAGA+CGG - chr2_4:19584025-19584044 Msa0319710:intron 30.0%
GATAGGATATGGATATGATA+AGG - chr2_4:19584214-19584233 Msa0319710:CDS 30.0%
!! AAGATTTTAATGAGATAGGC+AGG - chr2_4:19584269-19584288 Msa0319710:CDS 30.0%
GTCAAGTTATCATATCATGA+TGG - chr2_4:19584309-19584328 Msa0319710:intron 30.0%
AATGTTTCATTCCCTTAACA+TGG - chr2_4:19584454-19584473 Msa0319710:intron 30.0%
TTGTTTGTTTCCAGAATACT+TGG - chr2_4:19584649-19584668 Msa0319710:CDS 30.0%
! TTTTCATGATCCAAGTATTC+TGG + chr2_4:19584662-19584681 None:intergenic 30.0%
CTTGATTGAAACTTTGATGT+TGG - chr2_4:19585050-19585069 Msa0319710:intron 30.0%
TGTGAATGAAGGAATTGAAG+TGG - chr2_4:19582651-19582670 Msa0319710:CDS 35.0%
GGGATCAAATTCTGTTAAGA+AGG + chr2_4:19582896-19582915 None:intergenic 35.0%
!! CTTTAGTACTCTTGGTGTTT+CGG + chr2_4:19583019-19583038 None:intergenic 35.0%
TAGCATCAACATCATTTCTC+TGG + chr2_4:19583359-19583378 None:intergenic 35.0%
GATGTATAGATACACGGAAA+CGG + chr2_4:19583605-19583624 None:intergenic 35.0%
GTATCTATACATCCTTCTAC+AGG - chr2_4:19583612-19583631 Msa0319710:intron 35.0%
GTAGACTGTTTGAAGAACTA+TGG - chr2_4:19583639-19583658 Msa0319710:intron 35.0%
ATTGTTGAATCTCCAACATC+AGG + chr2_4:19583846-19583865 None:intergenic 35.0%
TAGAAACTTCAACTTATGGC+AGG - chr2_4:19583908-19583927 Msa0319710:CDS 35.0%
CGTCTAACTTGAGTTTATAC+AGG + chr2_4:19584027-19584046 None:intergenic 35.0%
TTTAGCCAATTGAACAGCAA+AGG + chr2_4:19584101-19584120 None:intergenic 35.0%
TTGAATTGTGAATACGAACC+AGG + chr2_4:19584139-19584158 None:intergenic 35.0%
CTCTATCATGACCATCAAAT+GGG + chr2_4:19584191-19584210 None:intergenic 35.0%
TCTCTATCATGACCATCAAA+TGG + chr2_4:19584192-19584211 None:intergenic 35.0%
! TTTGATGGTCATGATAGAGA+CGG - chr2_4:19584192-19584211 Msa0319710:intron 35.0%
! ATAAGGTCTTATCCTCATGT+TGG - chr2_4:19584231-19584250 Msa0319710:CDS 35.0%
ATGATACGTATAAACCCTGA+AGG + chr2_4:19584425-19584444 None:intergenic 35.0%
ACTAATGCTCACACAATTGA+AGG - chr2_4:19584503-19584522 Msa0319710:intron 35.0%
TTAATTAGCGGCATAGCTTA+TGG - chr2_4:19584716-19584735 Msa0319710:intron 35.0%
GTCACATTATGTGATGACAT+TGG - chr2_4:19584858-19584877 Msa0319710:CDS 35.0%
ACATCTTATGCTGCCTTAGA+AGG - chr2_4:19582680-19582699 Msa0319710:CDS 40.0%
TCATAACCTAAGGCCTTCTA+AGG + chr2_4:19582696-19582715 None:intergenic 40.0%
!! TTGGCACTGATCATAACCTA+AGG + chr2_4:19582706-19582725 None:intergenic 40.0%
CTTAACAGAATTTGATCCCG+AGG - chr2_4:19582897-19582916 Msa0319710:intron 40.0%
! CAGGGCAAACATTTTCTCAA+GGG + chr2_4:19582945-19582964 None:intergenic 40.0%
GGAATGAGATTGCATTAGCA+GGG + chr2_4:19582963-19582982 None:intergenic 40.0%
TGGAATGAGATTGCATTAGC+AGG + chr2_4:19582964-19582983 None:intergenic 40.0%
!! CGAAACACCAAGAGTACTAA+AGG - chr2_4:19583017-19583036 Msa0319710:intron 40.0%
ATTGGATTGAACATGCAGGA+CGG - chr2_4:19583129-19583148 Msa0319710:intron 40.0%
CTTACATATGTTACCTCTCC+TGG + chr2_4:19583309-19583328 None:intergenic 40.0%
TAGAGATCCATACAAGTGCA+AGG - chr2_4:19583379-19583398 Msa0319710:intron 40.0%
! AAGCCTCAGTTTTCACTACT+TGG - chr2_4:19583539-19583558 Msa0319710:CDS 40.0%
TCTCCAAGTAGTGAAAACTG+AGG + chr2_4:19583545-19583564 None:intergenic 40.0%
GAAGAACTATGGCATGCTTT+AGG - chr2_4:19583650-19583669 Msa0319710:intron 40.0%
! AGAGTTGAAGGCACAACTTA+CGG + chr2_4:19583705-19583724 None:intergenic 40.0%
CAACATCAGGTAAACTAACC+TGG + chr2_4:19583833-19583852 None:intergenic 40.0%
!! CAGGTTAGTTTACCTGATGT+TGG - chr2_4:19583831-19583850 Msa0319710:intron 40.0%
!! GATAGCCTTTGCTGTTCAAT+TGG - chr2_4:19584093-19584112 Msa0319710:intron 40.0%
AATTGTGAATACGAACCAGG+CGG + chr2_4:19584136-19584155 None:intergenic 40.0%
! AGTCCTTTGAAAACCTTCAC+AGG - chr2_4:19584164-19584183 Msa0319710:intron 40.0%
TGATAGAGACGGATAGGATA+TGG - chr2_4:19584203-19584222 Msa0319710:intron 40.0%
!! CCTCATGTTGGTTTCTTACT+CGG - chr2_4:19584243-19584262 Msa0319710:CDS 40.0%
!! CTCATGTTGGTTTCTTACTC+GGG - chr2_4:19584244-19584263 Msa0319710:CDS 40.0%
CAGGATAAGAGAGACATGAT+AGG + chr2_4:19584389-19584408 None:intergenic 40.0%
TTTCATTCCCTTAACATGGC+AGG - chr2_4:19584458-19584477 Msa0319710:intron 40.0%
AAGAAAGCCTGCCATGTTAA+GGG + chr2_4:19584468-19584487 None:intergenic 40.0%
GGCATACATGTTCAGATTGT+TGG - chr2_4:19584879-19584898 Msa0319710:exon 40.0%
TCATCCTGAGCATCTCTTAT+TGG - chr2_4:19584956-19584975 Msa0319710:five_prime_UTR 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG - chr2_4:19584964-19584983 Msa0319710:five_prime_UTR 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG - chr2_4:19584965-19584984 Msa0319710:five_prime_UTR 40.0%
! AGTCTGGTTTACACTCTTGC+TGG - chr2_4:19582469-19582488 Msa0319710:three_prime_UTR 45.0%
! GTTGTGAGTGCTGTGAATGA+AGG - chr2_4:19582640-19582659 Msa0319710:CDS 45.0%
GTATGCTGACGTGTGATGTA+TGG + chr2_4:19582791-19582810 None:intergenic 45.0%
! GCAGGGCAAACATTTTCTCA+AGG + chr2_4:19582946-19582965 None:intergenic 45.0%
ACTTCAACTTATGGCAGGTG+TGG - chr2_4:19583913-19583932 Msa0319710:CDS 45.0%
CAATATCTCCACTCATCGGA+CGG + chr2_4:19584051-19584070 None:intergenic 45.0%
GTCCGATGAGTGGAGATATT+GGG - chr2_4:19584050-19584069 Msa0319710:intron 45.0%
CTCCCAATATCTCCACTCAT+CGG + chr2_4:19584055-19584074 None:intergenic 45.0%
ATGAGTGGAGATATTGGGAG+AGG - chr2_4:19584055-19584074 Msa0319710:intron 45.0%
AAAGCAAAAGATAGACCGCC+TGG - chr2_4:19584118-19584137 Msa0319710:intron 45.0%
! GGTCCTGTGAAGGTTTTCAA+AGG + chr2_4:19584170-19584189 None:intergenic 45.0%
TGGTCATGATAGAGACGGAT+AGG - chr2_4:19584197-19584216 Msa0319710:intron 45.0%
CCGAGTAAGAAACCAACATG+AGG + chr2_4:19584246-19584265 None:intergenic 45.0%
GCAGGATATGATATGCGACA+TGG - chr2_4:19584287-19584306 Msa0319710:intron 45.0%
TCTTATCCTGACCATCGAAC+AGG - chr2_4:19584399-19584418 Msa0319710:CDS 45.0%
GAAGAAAGCCTGCCATGTTA+AGG + chr2_4:19584469-19584488 None:intergenic 45.0%
GTTTGAGTAATGCTGTCACG+TGG - chr2_4:19584558-19584577 Msa0319710:intron 45.0%
CGCTAATTAACGCACATGAC+GGG + chr2_4:19584706-19584725 None:intergenic 45.0%
CCGCTAATTAACGCACATGA+CGG + chr2_4:19584707-19584726 None:intergenic 45.0%
CCGTCATGTGCGTTAATTAG+CGG - chr2_4:19584704-19584723 Msa0319710:intron 45.0%
ATTAGCGGCATAGCTTATGG+CGG - chr2_4:19584719-19584738 Msa0319710:intron 45.0%
AGATCCATGCAATCCCAACA+TGG - chr2_4:19584912-19584931 Msa0319710:five_prime_UTR 45.0%
AGAGCCAATAAGAGATGCTC+AGG + chr2_4:19584963-19584982 None:intergenic 45.0%
TCTAAGGGAAGCTCTTGCTT+TGG - chr2_4:19584980-19584999 Msa0319710:five_prime_UTR 45.0%
CTGGTTTACACTCTTGCTGG+AGG - chr2_4:19582472-19582491 Msa0319710:three_prime_UTR 50.0%
ATGCTGCCTTAGAAGGCCTT+AGG - chr2_4:19582687-19582706 Msa0319710:CDS 50.0%
CATGCAGGACGGAGTCATAA+CGG - chr2_4:19583140-19583159 Msa0319710:intron 50.0%
CAGTCTACTCTGCCTGTAGA+AGG + chr2_4:19583627-19583646 None:intergenic 50.0%
CGTCCGATGAGTGGAGATAT+TGG - chr2_4:19584049-19584068 Msa0319710:intron 50.0%
TATTGGGAGAGGAGCGACTA+AGG - chr2_4:19584066-19584085 Msa0319710:intron 50.0%
CCATCAAATGGGTCCTGTGA+AGG + chr2_4:19584180-19584199 None:intergenic 50.0%
CCTTCACAGGACCCATTTGA+TGG - chr2_4:19584177-19584196 Msa0319710:intron 50.0%
GCAGGCTTTCTTCAACTAGC+TGG - chr2_4:19584476-19584495 Msa0319710:intron 50.0%
GGCTTTCTTCAACTAGCTGG+TGG - chr2_4:19584479-19584498 Msa0319710:intron 50.0%
TCCATGCAATCCCAACATGG+TGG - chr2_4:19584915-19584934 Msa0319710:five_prime_UTR 50.0%
TCCACCATGTTGGGATTGCA+TGG + chr2_4:19584919-19584938 None:intergenic 50.0%
TGAAGCAGCTCCACCATGTT+GGG + chr2_4:19584928-19584947 None:intergenic 50.0%
TTGAAGCAGCTCCACCATGT+TGG + chr2_4:19584929-19584948 None:intergenic 50.0%
AGGGAAGCTCTTGCTTTGGT+TGG - chr2_4:19584984-19585003 Msa0319710:intron 50.0%
TGATCCCGAGGACTGTCCAT+CGG - chr2_4:19582909-19582928 Msa0319710:intron 55.0%
ACAGTCCGATGGACAGTCCT+CGG + chr2_4:19582917-19582936 None:intergenic 55.0%
!! GTCATAACGGAGCGCTGCTA+TGG - chr2_4:19583153-19583172 Msa0319710:intron 55.0%
TGAAGGCCTGTTCGATGGTC+AGG + chr2_4:19584408-19584427 None:intergenic 55.0%
TGACCATCGAACAGGCCTTC+AGG - chr2_4:19584407-19584426 Msa0319710:CDS 55.0%
GACCATCGAACAGGCCTTCA+GGG - chr2_4:19584408-19584427 Msa0319710:CDS 55.0%
AACCCTGAAGGCCTGTTCGA+TGG + chr2_4:19584413-19584432 None:intergenic 55.0%
CAGTCCGATGGACAGTCCTC+GGG + chr2_4:19582916-19582935 None:intergenic 60.0%
! CAAGGGCGTGAACAGTCCGA+TGG + chr2_4:19582928-19582947 None:intergenic 60.0%
TTAGACGGCCGTCCGATGAG+TGG - chr2_4:19584040-19584059 Msa0319710:intron 60.0%
TTATGGCGGCTACGCGCGAA+AGG - chr2_4:19584733-19584752 Msa0319710:intron 60.0%
!! ACGGAGCGCTGCTATGGCTG+TGG - chr2_4:19583159-19583178 Msa0319710:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 19582461 19585148 19582461 ID=Msa0319710;Name=Msa0319710
chr2_4 mRNA 19582461 19585148 19582461 ID=Msa0319710-mRNA-1;Parent=Msa0319710;Name=Msa0319710-mRNA-1;_AED=0.24;_eAED=0.24;_QI=150|0.75|0.77|1|0.5|0.55|9|123|220
chr2_4 exon 19582461 19582715 19582461 ID=Msa0319710-mRNA-1:exon:7284;Parent=Msa0319710-mRNA-1
chr2_4 exon 19583504 19583569 19583504 ID=Msa0319710-mRNA-1:exon:7283;Parent=Msa0319710-mRNA-1
chr2_4 exon 19583680 19583775 19583680 ID=Msa0319710-mRNA-1:exon:7282;Parent=Msa0319710-mRNA-1
chr2_4 exon 19583906 19583975 19583906 ID=Msa0319710-mRNA-1:exon:7281;Parent=Msa0319710-mRNA-1
chr2_4 exon 19584209 19584299 19584209 ID=Msa0319710-mRNA-1:exon:7280;Parent=Msa0319710-mRNA-1
chr2_4 exon 19584393 19584462 19584393 ID=Msa0319710-mRNA-1:exon:7279;Parent=Msa0319710-mRNA-1
chr2_4 exon 19584600 19584704 19584600 ID=Msa0319710-mRNA-1:exon:7278;Parent=Msa0319710-mRNA-1
chr2_4 exon 19584852 19585001 19584852 ID=Msa0319710-mRNA-1:exon:7277;Parent=Msa0319710-mRNA-1
chr2_4 exon 19585116 19585148 19585116 ID=Msa0319710-mRNA-1:exon:7276;Parent=Msa0319710-mRNA-1
chr2_4 five_prime_UTR 19585116 19585148 19585116 ID=Msa0319710-mRNA-1:five_prime_utr;Parent=Msa0319710-mRNA-1
chr2_4 five_prime_UTR 19584885 19585001 19584885 ID=Msa0319710-mRNA-1:five_prime_utr;Parent=Msa0319710-mRNA-1
chr2_4 CDS 19584852 19584884 19584852 ID=Msa0319710-mRNA-1:cds;Parent=Msa0319710-mRNA-1
chr2_4 CDS 19584600 19584704 19584600 ID=Msa0319710-mRNA-1:cds;Parent=Msa0319710-mRNA-1
chr2_4 CDS 19584393 19584462 19584393 ID=Msa0319710-mRNA-1:cds;Parent=Msa0319710-mRNA-1
chr2_4 CDS 19584209 19584299 19584209 ID=Msa0319710-mRNA-1:cds;Parent=Msa0319710-mRNA-1
chr2_4 CDS 19583906 19583975 19583906 ID=Msa0319710-mRNA-1:cds;Parent=Msa0319710-mRNA-1
chr2_4 CDS 19583680 19583775 19583680 ID=Msa0319710-mRNA-1:cds;Parent=Msa0319710-mRNA-1
chr2_4 CDS 19583504 19583569 19583504 ID=Msa0319710-mRNA-1:cds;Parent=Msa0319710-mRNA-1
chr2_4 CDS 19582584 19582715 19582584 ID=Msa0319710-mRNA-1:cds;Parent=Msa0319710-mRNA-1
chr2_4 three_prime_UTR 19582461 19582583 19582461 ID=Msa0319710-mRNA-1:three_prime_utr;Parent=Msa0319710-mRNA-1
Gene Sequence

>Msa0319710

ATGATGATAAAGATCTTCACTTTCGCAAAGCCCAATTTGATCCCGAGGACTGTCCATCGGACTGTTCACGCCCTTGAGAAAATGTTTGCCCTGCTAATGCAATCTCATTCCAAGAGAAATCTACTTCACAAATTTCATGACGGAGTCATAACGGAGCGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGTCCCTATGTTAAAATAAGAGAGGTAACATATGTAAGAGATGCTGTTACAACTTCTGATCTCATCCAGAGAAATGATGTTGATGCTATAGAGATCCATACAAGTGCAAGGCAGAGTAGACTGTTTGAAGAACTATGGCATGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTAGCCGTTAGTTTACCTGATGTTGGAGATTCAACAATATCTTCTATGAACAAAATGTTCTCTATTATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGTTAGACGGCCGTCCGATGAGTGGAGATATTGGGAGAGGAGCGACTAAGGAGTCGATAGCCTTTGCTATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGCTGCTTCAATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCTCTTGCTTTGGTTGGACCTGTTAAATGTCTATAA

Protein sequence

>Msa0319710

MMIKIFTFAKPNLIPRTVHRTVHALEKMFALLMQSHSKRNLLHKFHDGVITERCYGCGRCLPVCPYVKIREVTYVRDAVTTSDLIQRNDVDAIEIHTSARQSRLFEELWHALGDSVENLKLVAVSLPDVGDSTISSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKESIAFAIVGRVLRSMQSQHGGAASIEDHPEHLLLALREALALVGPVKCL*