AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0705810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705810 MtrunA17_Chr8g0384321 96.507 229 8 0 1 229 1 229 1.15e-163 451
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 53 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTATTACCTGCCTATT+GGG 0.284290 4_4:-78609494 Msa0705810:three_prime_UTR
TACATTTGAAGTTGTAATAA+AGG 0.286030 4_4:+78609682 None:intergenic
TCTCTTTCAGAACGAGTTAC+TGG 0.303046 4_4:+78611479 None:intergenic
TATGAAAACTTTCTCAGGTT+TGG 0.308100 4_4:-78609706 Msa0705810:three_prime_UTR
CTCTGTCACCAATTTCATAT+AGG 0.329797 4_4:+78610110 None:intergenic
TTGTTCTATTACCTGCCTAT+TGG 0.338078 4_4:-78609495 Msa0705810:three_prime_UTR
GGAGAAAGGTAGAGAGTTGC+AGG 0.344873 4_4:-78611408 Msa0705810:CDS
GCACTAGCCCTATATGAAAT+TGG 0.346710 4_4:-78610118 Msa0705810:CDS
GAAGAGTTGCAATTGTAAAC+TGG 0.356751 4_4:+78609877 None:intergenic
CAGGCTCTTGGTGACTTCAA+TGG 0.375521 4_4:-78611389 Msa0705810:CDS
AGCATGCTTATCTGCATATA+AGG 0.380222 4_4:+78609917 None:intergenic
TCTGTCACCAATTTCATATA+GGG 0.381685 4_4:+78610111 None:intergenic
AGGAAGTGAAGTGAAAAGTA+TGG 0.383576 4_4:-78611729 Msa0705810:exon
TCGCAATGGAAGATTGGAAA+TGG 0.391615 4_4:+78611676 None:intergenic
TTCTCGTGGTGTTGAGTTGT+TGG 0.401266 4_4:-78611429 Msa0705810:CDS
GACGTTTCAATATCACTAAA+GGG 0.407097 4_4:-78610064 Msa0705810:CDS
ATGATTTCGCAATGGAAGAT+TGG 0.409414 4_4:+78611670 None:intergenic
GAGGTAGAAAGCAAAATATC+AGG 0.447983 4_4:-78611749 Msa0705810:five_prime_UTR
AGTTATATGAAAACTTTCTC+AGG 0.456744 4_4:-78609711 Msa0705810:three_prime_UTR
AAAGCATTGAATATTTGATA+AGG 0.457295 4_4:-78611771 None:intergenic
AAAAGAATTCTGAATTCTGA+TGG 0.476340 4_4:+78611643 None:intergenic
AGACGTTTCAATATCACTAA+AGG 0.477307 4_4:-78610065 Msa0705810:CDS
CGCAATGGAAGATTGGAAAT+GGG 0.484979 4_4:+78611677 None:intergenic
AAGCAGGAAAAGGAATGAAA+AGG 0.487058 4_4:+78611540 None:intergenic
ATGGTGTCTTTGATGTTGCA+TGG 0.488474 4_4:-78609573 Msa0705810:three_prime_UTR
GGTAGAGAGTTGCAGGCTCT+TGG 0.490159 4_4:-78611401 Msa0705810:CDS
AGAAGAAGCAATAGCAGAGA+TGG 0.490588 4_4:-78610089 Msa0705810:CDS
AAACGTATGAATATAATGTA+AGG 0.503930 4_4:+78609754 None:intergenic
CTCTTTCAGAACGAGTTACT+GGG 0.504101 4_4:+78611480 None:intergenic
GGTGTTGAGTTGTTGGAGAA+AGG 0.504251 4_4:-78611422 Msa0705810:CDS
ATATCACTAAAGGGGTATCC+AGG 0.504295 4_4:-78610055 Msa0705810:intron
TAGAGAGGGGAATAGAGAAA+AGG 0.525991 4_4:+78611567 None:intergenic
CCTTCACCAAAAGCAGGAAA+AGG 0.532056 4_4:+78611530 None:intergenic
TATGAAAGATCTGTAAAATG+AGG 0.541188 4_4:+78609849 None:intergenic
TGCAGAGAACTAATCAAACT+TGG 0.543993 4_4:+78609801 None:intergenic
TTGCATACTCAGAGAATGCT+AGG 0.548823 4_4:+78610152 None:intergenic
TAGCATTCTCTGAGTATGCA+AGG 0.556080 4_4:-78610150 Msa0705810:CDS
GAATGAAAAGGAAACTAGAG+AGG 0.556515 4_4:+78611552 None:intergenic
GCATTGAATATTTGATAAGG+AGG 0.568760 4_4:-78611768 None:intergenic
TTCTCTGAGTATGCAAGGGT+AGG 0.568807 4_4:-78610145 Msa0705810:CDS
TGGTGTCTTTGATGTTGCAT+GGG 0.576401 4_4:-78609572 Msa0705810:three_prime_UTR
TCTCTGAGTATGCAAGGGTA+GGG 0.583375 4_4:-78610144 Msa0705810:CDS
AGTGAAGTGAAAAGTATGGT+AGG 0.588255 4_4:-78611725 Msa0705810:exon
AATGAAAAGGAAACTAGAGA+GGG 0.589992 4_4:+78611553 None:intergenic
CTGTCACCTTCACCAAAAGC+AGG 0.597423 4_4:+78611524 None:intergenic
AGAGAACTAATCAAACTTGG+AGG 0.614896 4_4:+78609804 None:intergenic
ATCTCACAAAGAGTTTCTCG+TGG 0.622042 4_4:-78611443 Msa0705810:CDS
ATGTTAGAGACACAAAGCAC+TGG 0.634191 4_4:-78609827 Msa0705810:CDS
ATGAAAAGGAAACTAGAGAG+GGG 0.635116 4_4:+78611554 None:intergenic
AGCATTCTCTGAGTATGCAA+GGG 0.637209 4_4:-78610149 Msa0705810:CDS
ACGTTTCAATATCACTAAAG+GGG 0.663806 4_4:-78610063 Msa0705810:CDS
ATGCAACATCAAAGACACCA+TGG 0.671226 4_4:+78609575 None:intergenic
AATGGAAGATTGGAAATGGG+TGG 0.722480 4_4:+78611680 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGTAAAAAAGAAAAAA+CGG + chr4_4:78611598-78611617 None:intergenic 10.0%
!! ATAATGTAAAAAAGAAAAAA+CGG + chr4_4:78611598-78611617 None:intergenic 10.0%
!!! ATCTAAAATCTAAATTGATA+TGG + chr4_4:78610210-78610229 None:intergenic 15.0%
!! TAATGTAAAAAAGAAAAAAC+GGG + chr4_4:78611597-78611616 None:intergenic 15.0%
!!! ATCTAAAATCTAAATTGATA+TGG + chr4_4:78610210-78610229 None:intergenic 15.0%
!! TAATGTAAAAAAGAAAAAAC+GGG + chr4_4:78611597-78611616 None:intergenic 15.0%
!!! GCAAATATTCATTTACTTTT+GGG + chr4_4:78610525-78610544 None:intergenic 20.0%
!!! AGCAAATATTCATTTACTTT+TGG + chr4_4:78610526-78610545 None:intergenic 20.0%
!!! TGTAAGAGTGTATTATTTTT+TGG - chr4_4:78610778-78610797 Msa0705810:intron 20.0%
!! TATGAACATAAACTTATTGA+TGG + chr4_4:78611033-78611052 None:intergenic 20.0%
!! AAACGTATGAATATAATGTA+AGG + chr4_4:78611500-78611519 None:intergenic 20.0%
!!! TACATTTGAAGTTGTAATAA+AGG + chr4_4:78611572-78611591 None:intergenic 20.0%
!!! GTATTTTTTTTTTTCTTCCA+TGG - chr4_4:78611659-78611678 Msa0705810:CDS 20.0%
!!! GCAAATATTCATTTACTTTT+GGG + chr4_4:78610525-78610544 None:intergenic 20.0%
!!! AGCAAATATTCATTTACTTT+TGG + chr4_4:78610526-78610545 None:intergenic 20.0%
!!! TGTAAGAGTGTATTATTTTT+TGG - chr4_4:78610778-78610797 Msa0705810:intron 20.0%
!! TATGAACATAAACTTATTGA+TGG + chr4_4:78611033-78611052 None:intergenic 20.0%
!! AAACGTATGAATATAATGTA+AGG + chr4_4:78611500-78611519 None:intergenic 20.0%
!!! TACATTTGAAGTTGTAATAA+AGG + chr4_4:78611572-78611591 None:intergenic 20.0%
!!! GTATTTTTTTTTTTCTTCCA+TGG - chr4_4:78611659-78611678 Msa0705810:CDS 20.0%
! AAAAGAATTCTGAATTCTGA+TGG + chr4_4:78609611-78609630 None:intergenic 25.0%
! TTGCTTGTTTATCTTCAATT+TGG - chr4_4:78609934-78609953 Msa0705810:CDS 25.0%
! GTTTATCTTCAATTTGGTAA+TGG - chr4_4:78609940-78609959 Msa0705810:CDS 25.0%
!!! TCAATTTGGTAATGGATTAT+TGG - chr4_4:78609948-78609967 Msa0705810:intron 25.0%
! ACAAGACATGATATATGAAT+TGG - chr4_4:78610022-78610041 Msa0705810:intron 25.0%
!! TTTAGATTTTAGATTGCCAT+TGG - chr4_4:78610216-78610235 Msa0705810:intron 25.0%
! TTTACTGAGCAATCAATTAA+GGG - chr4_4:78610249-78610268 Msa0705810:intron 25.0%
! TTCTATTAAAAATGGGTGTT+TGG + chr4_4:78610499-78610518 None:intergenic 25.0%
! TCAAACATTAATTTAGCAGT+AGG + chr4_4:78610582-78610601 None:intergenic 25.0%
!! TATAATTAAACCGACTTTAG+AGG - chr4_4:78610824-78610843 Msa0705810:intron 25.0%
!! GAATAGGTTCATTTTGTATT+TGG - chr4_4:78610962-78610981 Msa0705810:intron 25.0%
! TATGAAAGATCTGTAAAATG+AGG + chr4_4:78611405-78611424 None:intergenic 25.0%
! AGTTATATGAAAACTTTCTC+AGG - chr4_4:78611540-78611559 Msa0705810:CDS 25.0%
! AAAAGAATTCTGAATTCTGA+TGG + chr4_4:78609611-78609630 None:intergenic 25.0%
! TTGCTTGTTTATCTTCAATT+TGG - chr4_4:78609934-78609953 Msa0705810:CDS 25.0%
! GTTTATCTTCAATTTGGTAA+TGG - chr4_4:78609940-78609959 Msa0705810:CDS 25.0%
!!! TCAATTTGGTAATGGATTAT+TGG - chr4_4:78609948-78609967 Msa0705810:intron 25.0%
! ACAAGACATGATATATGAAT+TGG - chr4_4:78610022-78610041 Msa0705810:intron 25.0%
!! TTTAGATTTTAGATTGCCAT+TGG - chr4_4:78610216-78610235 Msa0705810:intron 25.0%
! TTTACTGAGCAATCAATTAA+GGG - chr4_4:78610249-78610268 Msa0705810:intron 25.0%
! TTCTATTAAAAATGGGTGTT+TGG + chr4_4:78610499-78610518 None:intergenic 25.0%
! TCAAACATTAATTTAGCAGT+AGG + chr4_4:78610582-78610601 None:intergenic 25.0%
!! TATAATTAAACCGACTTTAG+AGG - chr4_4:78610824-78610843 Msa0705810:intron 25.0%
!! GAATAGGTTCATTTTGTATT+TGG - chr4_4:78610962-78610981 Msa0705810:intron 25.0%
! TATGAAAGATCTGTAAAATG+AGG + chr4_4:78611405-78611424 None:intergenic 25.0%
! AGTTATATGAAAACTTTCTC+AGG - chr4_4:78611540-78611559 Msa0705810:CDS 25.0%
!!! ATGGTTTTATGATTTCGCAA+TGG + chr4_4:78609592-78609611 None:intergenic 30.0%
AATGAAAAGGAAACTAGAGA+GGG + chr4_4:78609701-78609720 None:intergenic 30.0%
TTACCCAATATCCTTTCATT+AGG - chr4_4:78609908-78609927 Msa0705810:CDS 30.0%
GAACCTAATGAAAGGATATT+GGG + chr4_4:78609914-78609933 None:intergenic 30.0%
AGAACCTAATGAAAGGATAT+TGG + chr4_4:78609915-78609934 None:intergenic 30.0%
ATATCATGTCTTGTCACAAA+AGG + chr4_4:78610016-78610035 None:intergenic 30.0%
TACTACATCTCAATCTTAGA+TGG + chr4_4:78610180-78610199 None:intergenic 30.0%
CTTAATTGATTGCTCAGTAA+AGG + chr4_4:78610250-78610269 None:intergenic 30.0%
CTTTACTGAGCAATCAATTA+AGG - chr4_4:78610248-78610267 Msa0705810:intron 30.0%
TTTCTATAATCCGAGAGATA+AGG - chr4_4:78610312-78610331 Msa0705810:intron 30.0%
TTCTATAATCCGAGAGATAA+GGG - chr4_4:78610313-78610332 Msa0705810:intron 30.0%
TGGGCGATTCTATTAAAAAT+GGG + chr4_4:78610506-78610525 None:intergenic 30.0%
TTGGGCGATTCTATTAAAAA+TGG + chr4_4:78610507-78610526 None:intergenic 30.0%
ACTAGCAGTAAAACTTAACT+AGG + chr4_4:78610551-78610570 None:intergenic 30.0%
AACAGAGTTGAAGAATAAGA+GGG + chr4_4:78610618-78610637 None:intergenic 30.0%
! TAGGTTCATTTTGTATTTGG+TGG - chr4_4:78610965-78610984 Msa0705810:intron 30.0%
TTTCAATCACCTACAAAAAC+AGG + chr4_4:78611069-78611088 None:intergenic 30.0%
TCTGTCACCAATTTCATATA+GGG + chr4_4:78611143-78611162 None:intergenic 30.0%
AGACGTTTCAATATCACTAA+AGG - chr4_4:78611186-78611205 Msa0705810:intron 30.0%
GACGTTTCAATATCACTAAA+GGG - chr4_4:78611187-78611206 Msa0705810:intron 30.0%
ACGTTTCAATATCACTAAAG+GGG - chr4_4:78611188-78611207 Msa0705810:intron 30.0%
TATGAAAACTTTCTCAGGTT+TGG - chr4_4:78611545-78611564 Msa0705810:CDS 30.0%
! ATTTTCTACTTCAACTCTTG+TGG - chr4_4:78611616-78611635 Msa0705810:CDS 30.0%
!!! ATGGTTTTATGATTTCGCAA+TGG + chr4_4:78609592-78609611 None:intergenic 30.0%
AATGAAAAGGAAACTAGAGA+GGG + chr4_4:78609701-78609720 None:intergenic 30.0%
TTACCCAATATCCTTTCATT+AGG - chr4_4:78609908-78609927 Msa0705810:CDS 30.0%
GAACCTAATGAAAGGATATT+GGG + chr4_4:78609914-78609933 None:intergenic 30.0%
AGAACCTAATGAAAGGATAT+TGG + chr4_4:78609915-78609934 None:intergenic 30.0%
ATATCATGTCTTGTCACAAA+AGG + chr4_4:78610016-78610035 None:intergenic 30.0%
TACTACATCTCAATCTTAGA+TGG + chr4_4:78610180-78610199 None:intergenic 30.0%
CTTAATTGATTGCTCAGTAA+AGG + chr4_4:78610250-78610269 None:intergenic 30.0%
CTTTACTGAGCAATCAATTA+AGG - chr4_4:78610248-78610267 Msa0705810:intron 30.0%
TTTCTATAATCCGAGAGATA+AGG - chr4_4:78610312-78610331 Msa0705810:intron 30.0%
TTCTATAATCCGAGAGATAA+GGG - chr4_4:78610313-78610332 Msa0705810:intron 30.0%
TGGGCGATTCTATTAAAAAT+GGG + chr4_4:78610506-78610525 None:intergenic 30.0%
TTGGGCGATTCTATTAAAAA+TGG + chr4_4:78610507-78610526 None:intergenic 30.0%
ACTAGCAGTAAAACTTAACT+AGG + chr4_4:78610551-78610570 None:intergenic 30.0%
AACAGAGTTGAAGAATAAGA+GGG + chr4_4:78610618-78610637 None:intergenic 30.0%
! TAGGTTCATTTTGTATTTGG+TGG - chr4_4:78610965-78610984 Msa0705810:intron 30.0%
TTTCAATCACCTACAAAAAC+AGG + chr4_4:78611069-78611088 None:intergenic 30.0%
TCTGTCACCAATTTCATATA+GGG + chr4_4:78611143-78611162 None:intergenic 30.0%
AGACGTTTCAATATCACTAA+AGG - chr4_4:78611186-78611205 Msa0705810:intron 30.0%
GACGTTTCAATATCACTAAA+GGG - chr4_4:78611187-78611206 Msa0705810:intron 30.0%
ACGTTTCAATATCACTAAAG+GGG - chr4_4:78611188-78611207 Msa0705810:intron 30.0%
TATGAAAACTTTCTCAGGTT+TGG - chr4_4:78611545-78611564 Msa0705810:CDS 30.0%
! ATTTTCTACTTCAACTCTTG+TGG - chr4_4:78611616-78611635 Msa0705810:CDS 30.0%
GAGGTAGAAAGCAAAATATC+AGG - chr4_4:78609502-78609521 Msa0705810:three_prime_UTR 35.0%
AGGAAGTGAAGTGAAAAGTA+TGG - chr4_4:78609522-78609541 Msa0705810:three_prime_UTR 35.0%
! AGTGAAGTGAAAAGTATGGT+AGG - chr4_4:78609526-78609545 Msa0705810:three_prime_UTR 35.0%
ATGATTTCGCAATGGAAGAT+TGG + chr4_4:78609584-78609603 None:intergenic 35.0%
ATGAAAAGGAAACTAGAGAG+GGG + chr4_4:78609700-78609719 None:intergenic 35.0%
GAATGAAAAGGAAACTAGAG+AGG + chr4_4:78609702-78609721 None:intergenic 35.0%
AAGCAGGAAAAGGAATGAAA+AGG + chr4_4:78609714-78609733 None:intergenic 35.0%
! TTCATTCCTTTTCCTGCTTT+TGG - chr4_4:78609715-78609734 Msa0705810:three_prime_UTR 35.0%
ACAAGCAAGAACCTAATGAA+AGG + chr4_4:78609922-78609941 None:intergenic 35.0%
AATTGATTGCTCAGTAAAGG+TGG + chr4_4:78610247-78610266 None:intergenic 35.0%
GCAATCAATTAAGGGAAGTT+TGG - chr4_4:78610257-78610276 Msa0705810:intron 35.0%
CTGCAATCATAGGCTATTTA+AGG + chr4_4:78610343-78610362 None:intergenic 35.0%
CTTAAATAGCCTATGATTGC+AGG - chr4_4:78610341-78610360 Msa0705810:intron 35.0%
AAACACTCACACAAGTGTTT+GGG - chr4_4:78610444-78610463 Msa0705810:intron 35.0%
CAACAGAGTTGAAGAATAAG+AGG + chr4_4:78610619-78610638 None:intergenic 35.0%
CTCTTATTCTTCAACTCTGT+TGG - chr4_4:78610617-78610636 Msa0705810:intron 35.0%
TCAAAGTTCATGCCAAGAAT+TGG - chr4_4:78610707-78610726 Msa0705810:intron 35.0%
CAAAGTTCATGCCAAGAATT+GGG - chr4_4:78610708-78610727 Msa0705810:intron 35.0%
TCTAGTAAAGTCCCAATTCT+TGG + chr4_4:78610722-78610741 None:intergenic 35.0%
TGAGAACTTTCCAAATCACA+AGG + chr4_4:78610850-78610869 None:intergenic 35.0%
CTTGCTCATACATTACTTCT+CGG - chr4_4:78610920-78610939 Msa0705810:intron 35.0%
TTGCTCATACATTACTTCTC+GGG - chr4_4:78610921-78610940 Msa0705810:intron 35.0%
GTTATGCCATGAAATAGATG+AGG + chr4_4:78610996-78611015 None:intergenic 35.0%
!!! AACATGCTACCTGTTTTTGT+AGG - chr4_4:78611057-78611076 Msa0705810:intron 35.0%
CTCTGTCACCAATTTCATAT+AGG + chr4_4:78611144-78611163 None:intergenic 35.0%
GCTATGAAATTGAACTTACC+TGG + chr4_4:78611217-78611236 None:intergenic 35.0%
AGCATGCTTATCTGCATATA+AGG + chr4_4:78611337-78611356 None:intergenic 35.0%
GAAGAGTTGCAATTGTAAAC+TGG + chr4_4:78611377-78611396 None:intergenic 35.0%
AGAGAACTAATCAAACTTGG+AGG + chr4_4:78611450-78611469 None:intergenic 35.0%
TGCAGAGAACTAATCAAACT+TGG + chr4_4:78611453-78611472 None:intergenic 35.0%
TTGTTCTATTACCTGCCTAT+TGG - chr4_4:78611756-78611775 Msa0705810:five_prime_UTR 35.0%
TGTTCTATTACCTGCCTATT+GGG - chr4_4:78611757-78611776 Msa0705810:five_prime_UTR 35.0%
GAGGTAGAAAGCAAAATATC+AGG - chr4_4:78609502-78609521 Msa0705810:three_prime_UTR 35.0%
AGGAAGTGAAGTGAAAAGTA+TGG - chr4_4:78609522-78609541 Msa0705810:three_prime_UTR 35.0%
! AGTGAAGTGAAAAGTATGGT+AGG - chr4_4:78609526-78609545 Msa0705810:three_prime_UTR 35.0%
ATGATTTCGCAATGGAAGAT+TGG + chr4_4:78609584-78609603 None:intergenic 35.0%
ATGAAAAGGAAACTAGAGAG+GGG + chr4_4:78609700-78609719 None:intergenic 35.0%
GAATGAAAAGGAAACTAGAG+AGG + chr4_4:78609702-78609721 None:intergenic 35.0%
AAGCAGGAAAAGGAATGAAA+AGG + chr4_4:78609714-78609733 None:intergenic 35.0%
! TTCATTCCTTTTCCTGCTTT+TGG - chr4_4:78609715-78609734 Msa0705810:three_prime_UTR 35.0%
ACAAGCAAGAACCTAATGAA+AGG + chr4_4:78609922-78609941 None:intergenic 35.0%
AATTGATTGCTCAGTAAAGG+TGG + chr4_4:78610247-78610266 None:intergenic 35.0%
GCAATCAATTAAGGGAAGTT+TGG - chr4_4:78610257-78610276 Msa0705810:intron 35.0%
CTGCAATCATAGGCTATTTA+AGG + chr4_4:78610343-78610362 None:intergenic 35.0%
CTTAAATAGCCTATGATTGC+AGG - chr4_4:78610341-78610360 Msa0705810:intron 35.0%
AAACACTCACACAAGTGTTT+GGG - chr4_4:78610444-78610463 Msa0705810:intron 35.0%
CAACAGAGTTGAAGAATAAG+AGG + chr4_4:78610619-78610638 None:intergenic 35.0%
CTCTTATTCTTCAACTCTGT+TGG - chr4_4:78610617-78610636 Msa0705810:intron 35.0%
TCAAAGTTCATGCCAAGAAT+TGG - chr4_4:78610707-78610726 Msa0705810:intron 35.0%
CAAAGTTCATGCCAAGAATT+GGG - chr4_4:78610708-78610727 Msa0705810:intron 35.0%
TCTAGTAAAGTCCCAATTCT+TGG + chr4_4:78610722-78610741 None:intergenic 35.0%
TGAGAACTTTCCAAATCACA+AGG + chr4_4:78610850-78610869 None:intergenic 35.0%
CTTGCTCATACATTACTTCT+CGG - chr4_4:78610920-78610939 Msa0705810:intron 35.0%
TTGCTCATACATTACTTCTC+GGG - chr4_4:78610921-78610940 Msa0705810:intron 35.0%
GTTATGCCATGAAATAGATG+AGG + chr4_4:78610996-78611015 None:intergenic 35.0%
!!! AACATGCTACCTGTTTTTGT+AGG - chr4_4:78611057-78611076 Msa0705810:intron 35.0%
CTCTGTCACCAATTTCATAT+AGG + chr4_4:78611144-78611163 None:intergenic 35.0%
GCTATGAAATTGAACTTACC+TGG + chr4_4:78611217-78611236 None:intergenic 35.0%
AGCATGCTTATCTGCATATA+AGG + chr4_4:78611337-78611356 None:intergenic 35.0%
GAAGAGTTGCAATTGTAAAC+TGG + chr4_4:78611377-78611396 None:intergenic 35.0%
AGAGAACTAATCAAACTTGG+AGG + chr4_4:78611450-78611469 None:intergenic 35.0%
TGCAGAGAACTAATCAAACT+TGG + chr4_4:78611453-78611472 None:intergenic 35.0%
TTGTTCTATTACCTGCCTAT+TGG - chr4_4:78611756-78611775 Msa0705810:five_prime_UTR 35.0%
AATGGAAGATTGGAAATGGG+TGG + chr4_4:78609574-78609593 None:intergenic 40.0%
CGCAATGGAAGATTGGAAAT+GGG + chr4_4:78609577-78609596 None:intergenic 40.0%
TCGCAATGGAAGATTGGAAA+TGG + chr4_4:78609578-78609597 None:intergenic 40.0%
TAGAGAGGGGAATAGAGAAA+AGG + chr4_4:78609687-78609706 None:intergenic 40.0%
CTCTTTCAGAACGAGTTACT+GGG + chr4_4:78609774-78609793 None:intergenic 40.0%
TCTCTTTCAGAACGAGTTAC+TGG + chr4_4:78609775-78609794 None:intergenic 40.0%
ATCTCACAAAGAGTTTCTCG+TGG - chr4_4:78609808-78609827 Msa0705810:CDS 40.0%
! CGCTCTTCAATACTTTTCTC+AGG - chr4_4:78609885-78609904 Msa0705810:CDS 40.0%
AGTAAAGGTGGAAAAGCCAA+TGG + chr4_4:78610235-78610254 None:intergenic 40.0%
TAAGGCTTACCCTTATCTCT+CGG + chr4_4:78610325-78610344 None:intergenic 40.0%
CAAACACTTGTGTGAGTGTT+TGG + chr4_4:78610445-78610464 None:intergenic 40.0%
CAAACACTCACACAAGTGTT+TGG - chr4_4:78610443-78610462 Msa0705810:intron 40.0%
! CTCTGTTGGTTGTTTATCTG+AGG - chr4_4:78610631-78610650 Msa0705810:intron 40.0%
!! AATCACAAGGCCTCTAAAGT+CGG + chr4_4:78610837-78610856 None:intergenic 40.0%
! ACTTTAGAGGCCTTGTGATT+TGG - chr4_4:78610837-78610856 Msa0705810:intron 40.0%
! GTGATTTGGAAAGTTCTCAG+AGG - chr4_4:78610851-78610870 Msa0705810:intron 40.0%
TTTAGCCACATGAAGTTGCA+AGG + chr4_4:78610893-78610912 None:intergenic 40.0%
CGAGAAGTAATGTATGAGCA+AGG + chr4_4:78610922-78610941 None:intergenic 40.0%
TTGCATACTCAGAGAATGCT+AGG + chr4_4:78611102-78611121 None:intergenic 40.0%
TAGCATTCTCTGAGTATGCA+AGG - chr4_4:78611101-78611120 Msa0705810:intron 40.0%
AGCATTCTCTGAGTATGCAA+GGG - chr4_4:78611102-78611121 Msa0705810:intron 40.0%
GCACTAGCCCTATATGAAAT+TGG - chr4_4:78611133-78611152 Msa0705810:intron 40.0%
AGAAGAAGCAATAGCAGAGA+TGG - chr4_4:78611162-78611181 Msa0705810:intron 40.0%
!! ATATCACTAAAGGGGTATCC+AGG - chr4_4:78611196-78611215 Msa0705810:intron 40.0%
ATGTTAGAGACACAAAGCAC+TGG - chr4_4:78611424-78611443 Msa0705810:CDS 40.0%
ATGCAACATCAAAGACACCA+TGG + chr4_4:78611679-78611698 None:intergenic 40.0%
ATGGTGTCTTTGATGTTGCA+TGG - chr4_4:78611678-78611697 Msa0705810:CDS 40.0%
TGGTGTCTTTGATGTTGCAT+GGG - chr4_4:78611679-78611698 Msa0705810:CDS 40.0%
AATGGAAGATTGGAAATGGG+TGG + chr4_4:78609574-78609593 None:intergenic 40.0%
CGCAATGGAAGATTGGAAAT+GGG + chr4_4:78609577-78609596 None:intergenic 40.0%
TCGCAATGGAAGATTGGAAA+TGG + chr4_4:78609578-78609597 None:intergenic 40.0%
TAGAGAGGGGAATAGAGAAA+AGG + chr4_4:78609687-78609706 None:intergenic 40.0%
CTCTTTCAGAACGAGTTACT+GGG + chr4_4:78609774-78609793 None:intergenic 40.0%
TCTCTTTCAGAACGAGTTAC+TGG + chr4_4:78609775-78609794 None:intergenic 40.0%
ATCTCACAAAGAGTTTCTCG+TGG - chr4_4:78609808-78609827 Msa0705810:CDS 40.0%
! CGCTCTTCAATACTTTTCTC+AGG - chr4_4:78609885-78609904 Msa0705810:CDS 40.0%
AGTAAAGGTGGAAAAGCCAA+TGG + chr4_4:78610235-78610254 None:intergenic 40.0%
TAAGGCTTACCCTTATCTCT+CGG + chr4_4:78610325-78610344 None:intergenic 40.0%
CAAACACTTGTGTGAGTGTT+TGG + chr4_4:78610445-78610464 None:intergenic 40.0%
CAAACACTCACACAAGTGTT+TGG - chr4_4:78610443-78610462 Msa0705810:intron 40.0%
! CTCTGTTGGTTGTTTATCTG+AGG - chr4_4:78610631-78610650 Msa0705810:intron 40.0%
!! AATCACAAGGCCTCTAAAGT+CGG + chr4_4:78610837-78610856 None:intergenic 40.0%
! ACTTTAGAGGCCTTGTGATT+TGG - chr4_4:78610837-78610856 Msa0705810:intron 40.0%
! GTGATTTGGAAAGTTCTCAG+AGG - chr4_4:78610851-78610870 Msa0705810:intron 40.0%
TTTAGCCACATGAAGTTGCA+AGG + chr4_4:78610893-78610912 None:intergenic 40.0%
CGAGAAGTAATGTATGAGCA+AGG + chr4_4:78610922-78610941 None:intergenic 40.0%
TTGCATACTCAGAGAATGCT+AGG + chr4_4:78611102-78611121 None:intergenic 40.0%
TAGCATTCTCTGAGTATGCA+AGG - chr4_4:78611101-78611120 Msa0705810:intron 40.0%
AGCATTCTCTGAGTATGCAA+GGG - chr4_4:78611102-78611121 Msa0705810:intron 40.0%
GCACTAGCCCTATATGAAAT+TGG - chr4_4:78611133-78611152 Msa0705810:intron 40.0%
AGAAGAAGCAATAGCAGAGA+TGG - chr4_4:78611162-78611181 Msa0705810:intron 40.0%
!! ATATCACTAAAGGGGTATCC+AGG - chr4_4:78611196-78611215 Msa0705810:intron 40.0%
ATGTTAGAGACACAAAGCAC+TGG - chr4_4:78611424-78611443 Msa0705810:CDS 40.0%
ATGCAACATCAAAGACACCA+TGG + chr4_4:78611679-78611698 None:intergenic 40.0%
ATGGTGTCTTTGATGTTGCA+TGG - chr4_4:78611678-78611697 Msa0705810:CDS 40.0%
TGGTGTCTTTGATGTTGCAT+GGG - chr4_4:78611679-78611698 Msa0705810:CDS 40.0%
CCTTCACCAAAAGCAGGAAA+AGG + chr4_4:78609724-78609743 None:intergenic 45.0%
!! CCTTTTCCTGCTTTTGGTGA+AGG - chr4_4:78609721-78609740 Msa0705810:three_prime_UTR 45.0%
! TTCTCGTGGTGTTGAGTTGT+TGG - chr4_4:78609822-78609841 Msa0705810:CDS 45.0%
! GGTGTTGAGTTGTTGGAGAA+AGG - chr4_4:78609829-78609848 Msa0705810:CDS 45.0%
TTTCATGTAAGCTCCCCCAA+TGG + chr4_4:78610367-78610386 None:intergenic 45.0%
GAGGCAAAGATGTCACACAA+TGG - chr4_4:78610650-78610669 Msa0705810:intron 45.0%
ATCCACCTTGCAACTTCATG+TGG - chr4_4:78610885-78610904 Msa0705810:intron 45.0%
CGAAATGAGTGACGTCGAAT+AGG - chr4_4:78610946-78610965 Msa0705810:intron 45.0%
GCTCGACCTCATCTATTTCA+TGG - chr4_4:78610987-78611006 Msa0705810:intron 45.0%
TTCTCTGAGTATGCAAGGGT+AGG - chr4_4:78611106-78611125 Msa0705810:intron 45.0%
TCTCTGAGTATGCAAGGGTA+GGG - chr4_4:78611107-78611126 Msa0705810:intron 45.0%
CCTTCACCAAAAGCAGGAAA+AGG + chr4_4:78609724-78609743 None:intergenic 45.0%
!! CCTTTTCCTGCTTTTGGTGA+AGG - chr4_4:78609721-78609740 Msa0705810:three_prime_UTR 45.0%
! TTCTCGTGGTGTTGAGTTGT+TGG - chr4_4:78609822-78609841 Msa0705810:CDS 45.0%
! GGTGTTGAGTTGTTGGAGAA+AGG - chr4_4:78609829-78609848 Msa0705810:CDS 45.0%
TTTCATGTAAGCTCCCCCAA+TGG + chr4_4:78610367-78610386 None:intergenic 45.0%
GAGGCAAAGATGTCACACAA+TGG - chr4_4:78610650-78610669 Msa0705810:intron 45.0%
ATCCACCTTGCAACTTCATG+TGG - chr4_4:78610885-78610904 Msa0705810:intron 45.0%
CGAAATGAGTGACGTCGAAT+AGG - chr4_4:78610946-78610965 Msa0705810:intron 45.0%
GCTCGACCTCATCTATTTCA+TGG - chr4_4:78610987-78611006 Msa0705810:intron 45.0%
TTCTCTGAGTATGCAAGGGT+AGG - chr4_4:78611106-78611125 Msa0705810:intron 45.0%
TCTCTGAGTATGCAAGGGTA+GGG - chr4_4:78611107-78611126 Msa0705810:intron 45.0%
CTGTCACCTTCACCAAAAGC+AGG + chr4_4:78609730-78609749 None:intergenic 50.0%
GGAGAAAGGTAGAGAGTTGC+AGG - chr4_4:78609843-78609862 Msa0705810:CDS 50.0%
! CAGGCTCTTGGTGACTTCAA+TGG - chr4_4:78609862-78609881 Msa0705810:CDS 50.0%
AGCCTATGATTGCAGGCCAT+TGG - chr4_4:78610348-78610367 Msa0705810:intron 50.0%
GCCTATGATTGCAGGCCATT+GGG - chr4_4:78610349-78610368 Msa0705810:intron 50.0%
CCTATGATTGCAGGCCATTG+GGG - chr4_4:78610350-78610369 Msa0705810:intron 50.0%
CTATGATTGCAGGCCATTGG+GGG - chr4_4:78610351-78610370 Msa0705810:intron 50.0%
GAAGTTGCAAGGTGGATGAG+TGG + chr4_4:78610882-78610901 None:intergenic 50.0%
AGCCACATGAAGTTGCAAGG+TGG + chr4_4:78610890-78610909 None:intergenic 50.0%
CTGTCACCTTCACCAAAAGC+AGG + chr4_4:78609730-78609749 None:intergenic 50.0%
GGAGAAAGGTAGAGAGTTGC+AGG - chr4_4:78609843-78609862 Msa0705810:CDS 50.0%
! CAGGCTCTTGGTGACTTCAA+TGG - chr4_4:78609862-78609881 Msa0705810:CDS 50.0%
AGCCTATGATTGCAGGCCAT+TGG - chr4_4:78610348-78610367 Msa0705810:intron 50.0%
GCCTATGATTGCAGGCCATT+GGG - chr4_4:78610349-78610368 Msa0705810:intron 50.0%
CCTATGATTGCAGGCCATTG+GGG - chr4_4:78610350-78610369 Msa0705810:intron 50.0%
CTATGATTGCAGGCCATTGG+GGG - chr4_4:78610351-78610370 Msa0705810:intron 50.0%
GAAGTTGCAAGGTGGATGAG+TGG + chr4_4:78610882-78610901 None:intergenic 50.0%
AGCCACATGAAGTTGCAAGG+TGG + chr4_4:78610890-78610909 None:intergenic 50.0%
GGTAGAGAGTTGCAGGCTCT+TGG - chr4_4:78609850-78609869 Msa0705810:CDS 55.0%
CCCCAATGGCCTGCAATCAT+AGG + chr4_4:78610353-78610372 None:intergenic 55.0%
GGTAGAGAGTTGCAGGCTCT+TGG - chr4_4:78609850-78609869 Msa0705810:CDS 55.0%
CCCCAATGGCCTGCAATCAT+AGG + chr4_4:78610353-78610372 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 78609494 78611779 78609494 ID=Msa0705810;Name=Msa0705810
chr4_4 mRNA 78609494 78611779 78609494 ID=Msa0705810-mRNA-1;Parent=Msa0705810;Name=Msa0705810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=47|1|1|1|1|1|3|285|229
chr4_4 exon 78609494 78609963 78609494 ID=Msa0705810-mRNA-1:exon:25119;Parent=Msa0705810-mRNA-1
chr4_4 exon 78610056 78610194 78610056 ID=Msa0705810-mRNA-1:exon:25118;Parent=Msa0705810-mRNA-1
chr4_4 exon 78611367 78611779 78611367 ID=Msa0705810-mRNA-1:exon:25117;Parent=Msa0705810-mRNA-1
chr4_4 five_prime_UTR 78611733 78611779 78611733 ID=Msa0705810-mRNA-1:five_prime_utr;Parent=Msa0705810-mRNA-1
chr4_4 CDS 78611367 78611732 78611367 ID=Msa0705810-mRNA-1:cds;Parent=Msa0705810-mRNA-1
chr4_4 CDS 78610056 78610194 78610056 ID=Msa0705810-mRNA-1:cds;Parent=Msa0705810-mRNA-1
chr4_4 CDS 78609779 78609963 78609779 ID=Msa0705810-mRNA-1:cds;Parent=Msa0705810-mRNA-1
chr4_4 three_prime_UTR 78609494 78609778 78609494 ID=Msa0705810-mRNA-1:three_prime_utr;Parent=Msa0705810-mRNA-1
Gene Sequence

>Msa0705810

ATGGTAGGTGCATGCAGAGCAGTAGCAGCACCACCCATTTCCAATCTTCCATTGCGAAATCATAAAACCATCAGAATTCAGAATTCTTTTCATCAGAACAAAAGCAAAGCTTTCAGAGCTCAACTTTCAAATAGACGCTTGTTCCTTTTCTCTATTCCCCTCTCTAGTTTCCTTTTCATTCCTTTTCCTGCTTTTGGTGAAGGTGACAGTGTCATTTCACAAGAGTATGACCCAGTAACTCGTTCTGAAAGAGATGCAAGTGCTTTAATCTCACAAAGAGTTTCTCGTGGTGTTGAGTTGTTGGAGAAAGGTAGAGAGTTGCAGGCTCTTGGTGACTTCAATGGCGCTCTTCAATACTTTTCTCAGGTGATTGAAAGCTACAAAGACCTAGCATTCTCTGAGTATGCAAGGGTAGGGAGAGCACTAGCCCTATATGAAATTGGTGACAGAGAAGAAGCAATAGCAGAGATGGAAGACGTTTCAATATCACTAAAGGGGTATCCAGAAGTACATGCAGCTCTTGCAGCAGCCTTATATGCAGATAAGCATGCTGCGTTGCTTGCTGAAAACCAGTTTACAATTGCAACTCTTCTTGATCCTCATTTTACAGATCTTTCATATGTTAGAGACACAAAGCACTGGCCTCCAAGTTTGATTAGTTCTCTGCAGCATTTCATTACACTATCTTAA

Protein sequence

>Msa0705810

MVGACRAVAAPPISNLPLRNHKTIRIQNSFHQNKSKAFRAQLSNRRLFLFSIPLSSFLFIPFPAFGEGDSVISQEYDPVTRSERDASALISQRVSRGVELLEKGRELQALGDFNGALQYFSQVIESYKDLAFSEYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYADKHAALLAENQFTIATLLDPHFTDLSYVRDTKHWPPSLISSLQHFITLS*