AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1036590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036590 MtrunA17_Chr7g0261031 96.875 224 6 1 1 223 1 224 8.64e-166 456
Msa1036590 MtrunA17_Chr1g0184271 71.204 191 45 5 8 194 12 196 1.16e-92 271
Msa1036590 MtrunA17_Chr7g0260971 73.585 106 28 0 3 108 9 114 2.51e-55 176
Msa1036590 MtrunA17_Chr5g0435641 55.782 147 61 2 2 145 1 146 2.14e-52 167
Msa1036590 MtrunA17_Chr8g0351701 50.000 176 65 3 8 162 23 196 7.98e-52 167
Msa1036590 MtrunA17_Chr1g0184281 70.192 104 31 0 5 108 12 115 2.31e-49 160
Msa1036590 MtrunA17_Chr7g0245871 71.287 101 29 0 8 108 27 127 3.65e-49 160
Msa1036590 MtrunA17_Chr8g0351721 66.667 105 35 0 6 110 16 120 1.01e-48 159
Msa1036590 MtrunA17_Chr6g0460951 63.889 108 39 0 7 114 39 146 8.25e-47 154
Msa1036590 MtrunA17_Chr7g0245861 68.817 93 27 2 5 95 9 101 2.56e-40 135
Msa1036590 MtrunA17_Chr3g0114061 43.919 148 80 2 1 148 1 145 2.19e-36 125
Msa1036590 MtrunA17_Chr5g0437571 45.625 160 72 5 4 162 2 147 4.84e-36 125
Msa1036590 MtrunA17_Chr2g0311601 56.000 100 43 1 4 103 9 107 2.94e-34 120
Msa1036590 MtrunA17_Chr4g0043421 52.830 106 49 1 4 109 11 115 7.05e-34 119
Msa1036590 MtrunA17_Chr3g0106101 44.516 155 79 6 4 157 2 150 8.00e-34 119
Msa1036590 MtrunA17_Chr7g0227511 56.122 98 42 1 5 102 8 104 2.61e-33 118
Msa1036590 MtrunA17_Chr5g0437401 41.250 160 76 4 5 164 8 149 6.30e-33 117
Msa1036590 MtrunA17_Chr3g0097221 50.877 114 55 1 2 115 1 113 7.55e-33 120
Msa1036590 MtrunA17_Chr4g0058651 57.292 96 40 1 7 102 10 104 1.14e-32 117
Msa1036590 MtrunA17_Chr5g0438091 53.398 103 45 2 7 108 38 138 1.32e-32 117
Msa1036590 MtrunA17_Chr3g0117121 56.250 96 41 1 7 102 9 103 5.49e-32 115
Msa1036590 MtrunA17_Chr3g0129071 55.446 101 42 2 7 106 46 144 8.80e-32 115
Msa1036590 MtrunA17_Chr6g0460941 59.091 88 36 0 8 95 7 94 2.08e-31 110
Msa1036590 MtrunA17_Chr5g0402611 51.818 110 52 1 1 110 1 109 2.56e-31 116
Msa1036590 MtrunA17_Chr3g0113891 49.515 103 51 1 5 107 11 112 3.93e-31 112
Msa1036590 MtrunA17_Chr6g0449641 53.061 98 45 1 5 102 6 102 4.60e-31 111
Msa1036590 MtrunA17_Chr3g0115431 48.182 110 56 1 1 110 2 110 3.94e-30 111
Msa1036590 MtrunA17_Chr6g0449651 49.524 105 49 2 1 102 57 160 5.54e-29 107
Msa1036590 MtrunA17_Chr4g0030001 53.061 98 44 2 7 103 23 119 1.89e-27 103
Msa1036590 MtrunA17_Chr5g0432451 55.340 103 43 2 7 108 42 142 1.25e-26 102
Msa1036590 MtrunA17_Chr1g0200201 51.579 95 45 1 9 103 73 166 1.66e-26 102
Msa1036590 MtrunA17_Chr8g0353981 55.172 87 38 1 2 88 1 86 2.47e-25 99.0
Msa1036590 MtrunA17_Chr5g0444351 40.000 140 77 3 9 148 6 138 4.52e-25 95.9
Msa1036590 MtrunA17_Chr7g0225111 43.269 104 58 1 7 110 4 106 2.41e-24 93.2
Msa1036590 MtrunA17_Chr8g0374591 40.385 104 61 1 8 111 8 110 3.73e-19 80.1
Msa1036590 MtrunA17_Chr8g0374601 37.500 104 64 1 8 111 26 128 1.10e-18 82.4
Msa1036590 MtrunA17_Chr8g0342351 37.255 102 63 1 9 110 13 113 2.62e-18 80.9
Msa1036590 MtrunA17_Chr4g0059901 37.143 105 65 1 4 108 6 109 6.46e-18 80.1
Msa1036590 MtrunA17_Chr2g0330201 34.579 107 69 1 4 110 15 120 3.62e-17 78.6
Msa1036590 MtrunA17_Chr6g0452691 38.636 88 52 2 2 88 3 89 1.40e-15 72.0
Msa1036590 MtrunA17_Chr4g0040831 27.979 193 115 6 4 178 11 197 1.42e-15 72.4
Msa1036590 MtrunA17_Chr6g0452661 42.353 85 45 3 9 90 10 93 3.02e-15 72.4
Msa1036590 MtrunA17_Chr8g0374581 35.294 102 64 2 8 108 8 108 6.89e-15 71.2
Msa1036590 MtrunA17_Chr6g0452671 34.906 106 65 2 9 111 12 116 1.20e-14 70.1
Msa1036590 MtrunA17_Chr2g0326041 54.167 48 21 1 7 54 32 78 8.17e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036590 AT3G58190.1 81.356 118 20 1 8 123 11 128 1.09e-70 215
Msa1036590 AT2G42440.1 74.046 131 32 1 2 130 1 131 1.07e-68 211
Msa1036590 AT2G31310.1 61.972 142 53 1 2 143 1 141 5.82e-60 187
Msa1036590 AT2G42430.1 72.897 107 29 0 4 110 11 117 5.81e-54 173
Msa1036590 AT4G00210.1 58.333 132 54 1 3 133 6 137 2.26e-51 166
Msa1036590 AT3G03760.1 71.569 102 29 0 7 108 50 151 5.20e-50 164
Msa1036590 AT5G06080.1 68.224 107 34 0 2 108 1 107 1.08e-49 160
Msa1036590 AT2G45420.1 74.000 100 26 0 11 110 40 139 2.86e-49 162
Msa1036590 AT4G00220.1 70.000 100 30 0 11 110 20 119 1.85e-46 154
Msa1036590 AT2G45410.1 60.000 115 43 2 11 122 19 133 5.32e-42 141
Msa1036590 AT3G27650.1 57.292 96 40 1 7 102 38 132 6.00e-33 117
Msa1036590 AT2G30130.1 51.695 118 53 3 2 118 1 115 1.54e-32 117
Msa1036590 AT5G63090.4 40.642 187 88 6 7 193 10 173 2.57e-32 116
Msa1036590 AT5G63090.3 40.642 187 88 6 7 193 10 173 2.57e-32 116
Msa1036590 AT5G63090.2 40.642 187 88 6 7 193 10 173 2.57e-32 116
Msa1036590 AT5G63090.1 40.642 187 88 6 7 193 10 173 2.57e-32 116
Msa1036590 AT1G07900.1 53.608 97 44 1 7 103 32 127 1.04e-30 112
Msa1036590 AT3G11090.1 50.980 102 49 1 5 106 8 108 1.17e-30 111
Msa1036590 AT1G31320.1 53.261 92 42 1 4 95 9 99 1.25e-30 111
Msa1036590 AT1G16530.1 48.305 118 58 3 7 122 13 129 2.40e-30 110
Msa1036590 AT2G28500.1 53.608 97 44 1 7 103 54 149 6.29e-30 111
Msa1036590 AT5G66870.1 51.376 109 52 1 2 110 1 108 1.59e-29 112
Msa1036590 AT2G30340.1 51.456 103 47 2 7 108 51 151 5.43e-29 109
Msa1036590 AT2G30340.2 51.456 103 47 2 7 108 52 152 5.79e-29 109
Msa1036590 AT2G23660.2 49.020 102 51 1 7 108 4 104 7.61e-27 105
Msa1036590 AT2G23660.3 49.020 102 51 1 7 108 4 104 7.61e-27 105
Msa1036590 AT2G23660.1 49.020 102 51 1 7 108 4 104 7.61e-27 105
Msa1036590 AT3G26660.1 46.316 95 50 1 9 103 6 99 3.73e-26 98.6
Msa1036590 AT1G65620.1 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1036590 AT1G65620.4 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1036590 AT1G65620.3 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1036590 AT1G65620.5 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1036590 AT1G65620.2 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1036590 AT3G26620.1 46.316 95 50 1 9 103 6 99 7.16e-26 97.8
Msa1036590 AT2G40470.2 54.369 103 44 2 7 108 19 119 9.64e-26 99.8
Msa1036590 AT2G40470.1 54.369 103 44 2 7 108 44 144 1.36e-25 99.8
Msa1036590 AT3G50510.1 42.478 113 64 1 2 114 6 117 4.20e-25 97.8
Msa1036590 AT3G50510.2 42.478 113 64 1 2 114 6 117 4.20e-25 97.8
Msa1036590 AT3G13850.1 38.136 118 63 3 9 118 37 152 1.31e-18 82.4
Msa1036590 AT1G72980.1 36.190 105 66 1 4 108 9 112 2.39e-16 75.1
Msa1036590 AT5G35900.1 38.235 102 62 1 9 110 6 106 6.83e-16 73.9
Msa1036590 AT3G47870.1 32.381 105 70 1 4 108 32 135 3.00e-14 70.9
Msa1036590 AT1G06280.1 38.667 75 45 1 9 83 25 98 4.30e-13 66.2

Find 47 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACTTCAAGATCCAATTTA+TGG 0.151814 7_1:-73009898 Msa1036590:CDS
TTTCCAAAGTTCTTCTCATT+AGG 0.257962 7_1:+73009282 None:intergenic
CCTTATGAATAGCTGCAAAA+TGG 0.260543 7_1:+73010016 None:intergenic
ATTAGTGGAAGAAGAGAAAT+CGG 0.262535 7_1:+73009182 None:intergenic
GCAGCTATTCATAAGGTCTT+TGG 0.287235 7_1:-73010009 Msa1036590:CDS
TGGGCAACACATCCATAAAT+TGG 0.288880 7_1:+73009886 None:intergenic
TCAACAACACAATATTATAA+TGG 0.305675 7_1:-73009153 Msa1036590:CDS
TTCCAAAGTTCTTCTCATTA+GGG 0.315481 7_1:+73009283 None:intergenic
CTCATGGATCTAAACCCTAT+TGG 0.344271 7_1:-73009117 Msa1036590:CDS
ATTGGAAACTATGAAAATTC+AGG 0.345302 7_1:-73009099 Msa1036590:CDS
TTTCCTCCTCAAGAATTTGC+AGG 0.357584 7_1:+73010092 None:intergenic
ATGAGATGCTTTCTTCCAAT+AGG 0.363922 7_1:+73009073 None:intergenic
TGAAAATTCAGGAACCCTAT+TGG 0.376897 7_1:-73009088 Msa1036590:CDS
ACGGCCATGATGACTGGTTC+TGG 0.395558 7_1:-73010129 None:intergenic
CAACAACACAATATTATAAT+GGG 0.395664 7_1:-73009152 Msa1036590:CDS
TTGAGGAGGAAATGTGTTAG+AGG 0.402110 7_1:-73010081 Msa1036590:CDS
TGAGATGCTTTCTTCCAATA+GGG 0.428947 7_1:+73009074 None:intergenic
TCTTGAGGGAGAATATTAGT+AGG 0.429657 7_1:+73009258 None:intergenic
GAGATGAACAAACCTGTTGC+TGG 0.430997 7_1:+73009851 None:intergenic
CTTATGAATAGCTGCAAAAT+GGG 0.434815 7_1:+73010017 None:intergenic
AACCCTAATGAGAAGAACTT+TGG 0.435631 7_1:-73009285 Msa1036590:CDS
ATTCTTACGGCCATGATGAC+TGG 0.446907 7_1:-73010135 None:intergenic
AATGGGTAGCACCTTGTTCA+TGG 0.448967 7_1:+73010034 None:intergenic
TGTTGTTGATGAGAGATTAG+TGG 0.463491 7_1:+73009167 None:intergenic
TCCCTCAAGATCTTCAAAGT+TGG 0.463884 7_1:-73009245 Msa1036590:CDS
CAAATTAGCCACTTACTGAT+AGG 0.482945 7_1:+73008984 None:intergenic
ACTGGTTCTGGTTCTCCTTG+TGG 0.494488 7_1:-73010117 Msa1036590:CDS
TGGGACTACCACTACTCTCA+TGG 0.512301 7_1:-73009133 Msa1036590:CDS
TCTTCAAAGTTGGTTCCAGA+TGG 0.523638 7_1:-73009235 Msa1036590:CDS
CTGTCTTTGCATGTTGTCAA+AGG 0.524030 7_1:+73009011 None:intergenic
CCTTGTTCATGGCAAAAGTA+AGG 0.524451 7_1:+73010045 None:intergenic
AACCAACTTTGAAGATCTTG+AGG 0.528680 7_1:+73009243 None:intergenic
GCTTCACAACGATCAGTCAC+AGG 0.531664 7_1:+73009952 None:intergenic
TTAGTGGAAGAAGAGAAATC+GGG 0.531706 7_1:+73009183 None:intergenic
ACCAACTTTGAAGATCTTGA+GGG 0.534056 7_1:+73009244 None:intergenic
GTGGAGCCTGCAAATTCTTG+AGG 0.534107 7_1:-73010098 Msa1036590:CDS
AAGAAATTGAGAACACATGT+TGG 0.541417 7_1:+73009206 None:intergenic
ATTATTACATCGCTCATCAA+AGG 0.565424 7_1:+73009041 None:intergenic
AGAACCAGAACCAGTCATCA+TGG 0.567393 7_1:+73010125 None:intergenic
TGAGAGAACAAGCAGCTCAA+AGG 0.584503 7_1:-73009332 Msa1036590:CDS
AAGAATTTGCAGGCTCCACA+AGG 0.586151 7_1:+73010102 None:intergenic
CAGTCACAGGGAGGTGTGCG+AGG 0.596818 7_1:+73009965 None:intergenic
GTTTAGATCCATGAGAGTAG+TGG 0.619212 7_1:+73009125 None:intergenic
GAGCCTGCAAATTCTTGAGG+AGG 0.637179 7_1:-73010095 Msa1036590:CDS
CTTCACAACGATCAGTCACA+GGG 0.652040 7_1:+73009953 None:intergenic
TTGACAACATGCAAAGACAG+TGG 0.686531 7_1:-73009008 Msa1036590:CDS
CACAACGATCAGTCACAGGG+AGG 0.754403 7_1:+73009956 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTCTTTTTTATATATAAAC+TGG + chr7_1:73009414-73009433 None:intergenic 15.0%
!!! TTGAGTTTGTAATAAAATTT+TGG - chr7_1:73009642-73009661 Msa1036590:intron 15.0%
!!! ACTCTTTTTTATATATAAAC+TGG + chr7_1:73009414-73009433 None:intergenic 15.0%
!!! TTGAGTTTGTAATAAAATTT+TGG - chr7_1:73009642-73009661 Msa1036590:intron 15.0%
!!! ATTAATTAACAAGAGTATCA+AGG - chr7_1:73009383-73009402 Msa1036590:intron 20.0%
!!! TTAATTAACAAGAGTATCAA+GGG - chr7_1:73009384-73009403 Msa1036590:intron 20.0%
!!! AGGTCTTAATATTGATTTTT+TGG + chr7_1:73009446-73009465 None:intergenic 20.0%
!! TATATTTGATAAAATCACGA+TGG - chr7_1:73009534-73009553 Msa1036590:intron 20.0%
!! TCAACAACACAATATTATAA+TGG - chr7_1:73009966-73009985 Msa1036590:CDS 20.0%
!! CAACAACACAATATTATAAT+GGG - chr7_1:73009967-73009986 Msa1036590:CDS 20.0%
!!! AATTTTCATAGTTTCCAATA+GGG + chr7_1:73010019-73010038 None:intergenic 20.0%
!!! ATTAATTAACAAGAGTATCA+AGG - chr7_1:73009383-73009402 Msa1036590:intron 20.0%
!!! TTAATTAACAAGAGTATCAA+GGG - chr7_1:73009384-73009403 Msa1036590:intron 20.0%
!!! AGGTCTTAATATTGATTTTT+TGG + chr7_1:73009446-73009465 None:intergenic 20.0%
!! TATATTTGATAAAATCACGA+TGG - chr7_1:73009534-73009553 Msa1036590:intron 20.0%
!! TCAACAACACAATATTATAA+TGG - chr7_1:73009966-73009985 Msa1036590:CDS 20.0%
!! CAACAACACAATATTATAAT+GGG - chr7_1:73009967-73009986 Msa1036590:CDS 20.0%
!!! AATTTTCATAGTTTCCAATA+GGG + chr7_1:73010019-73010038 None:intergenic 20.0%
!! TATGTCATGTTGATTGTATT+AGG + chr7_1:73009466-73009485 None:intergenic 25.0%
!! GAATTTTCATAGTTTCCAAT+AGG + chr7_1:73010020-73010039 None:intergenic 25.0%
! ATTGGAAACTATGAAAATTC+AGG - chr7_1:73010020-73010039 Msa1036590:CDS 25.0%
!! TATGTCATGTTGATTGTATT+AGG + chr7_1:73009466-73009485 None:intergenic 25.0%
!! GAATTTTCATAGTTTCCAAT+AGG + chr7_1:73010020-73010039 None:intergenic 25.0%
! ATTGGAAACTATGAAAATTC+AGG - chr7_1:73010020-73010039 Msa1036590:CDS 25.0%
CTTATGAATAGCTGCAAAAT+GGG + chr7_1:73009105-73009124 None:intergenic 30.0%
AGACTTCAAGATCCAATTTA+TGG - chr7_1:73009221-73009240 Msa1036590:CDS 30.0%
! ATTAGGGTTTTCAGAATTTG+GGG + chr7_1:73009823-73009842 None:intergenic 30.0%
! CATTAGGGTTTTCAGAATTT+GGG + chr7_1:73009824-73009843 None:intergenic 30.0%
! TCATTAGGGTTTTCAGAATT+TGG + chr7_1:73009825-73009844 None:intergenic 30.0%
TTCCAAAGTTCTTCTCATTA+GGG + chr7_1:73009839-73009858 None:intergenic 30.0%
TTTCCAAAGTTCTTCTCATT+AGG + chr7_1:73009840-73009859 None:intergenic 30.0%
AAGAAATTGAGAACACATGT+TGG + chr7_1:73009916-73009935 None:intergenic 30.0%
ATTAGTGGAAGAAGAGAAAT+CGG + chr7_1:73009940-73009959 None:intergenic 30.0%
ATTATTACATCGCTCATCAA+AGG + chr7_1:73010081-73010100 None:intergenic 30.0%
CTTATGAATAGCTGCAAAAT+GGG + chr7_1:73009105-73009124 None:intergenic 30.0%
AGACTTCAAGATCCAATTTA+TGG - chr7_1:73009221-73009240 Msa1036590:CDS 30.0%
! ATTAGGGTTTTCAGAATTTG+GGG + chr7_1:73009823-73009842 None:intergenic 30.0%
! CATTAGGGTTTTCAGAATTT+GGG + chr7_1:73009824-73009843 None:intergenic 30.0%
! TCATTAGGGTTTTCAGAATT+TGG + chr7_1:73009825-73009844 None:intergenic 30.0%
TTCCAAAGTTCTTCTCATTA+GGG + chr7_1:73009839-73009858 None:intergenic 30.0%
TTTCCAAAGTTCTTCTCATT+AGG + chr7_1:73009840-73009859 None:intergenic 30.0%
AAGAAATTGAGAACACATGT+TGG + chr7_1:73009916-73009935 None:intergenic 30.0%
ATTAGTGGAAGAAGAGAAAT+CGG + chr7_1:73009940-73009959 None:intergenic 30.0%
ATTATTACATCGCTCATCAA+AGG + chr7_1:73010081-73010100 None:intergenic 30.0%
CCTTATGAATAGCTGCAAAA+TGG + chr7_1:73009106-73009125 None:intergenic 35.0%
! CCATTTTGCAGCTATTCATA+AGG - chr7_1:73009103-73009122 Msa1036590:CDS 35.0%
TTGCTGGAGTGCAAAAATAT+GGG + chr7_1:73009255-73009274 None:intergenic 35.0%
CTTAAACTGAAAACCCTAGA+TGG - chr7_1:73009298-73009317 Msa1036590:CDS 35.0%
ATGTAAGCGTATACCATCTA+GGG + chr7_1:73009314-73009333 None:intergenic 35.0%
AATGTAAGCGTATACCATCT+AGG + chr7_1:73009315-73009334 None:intergenic 35.0%
TGTAAGACTTGGCACATATT+TGG - chr7_1:73009501-73009520 Msa1036590:intron 35.0%
TTGTATTAACTGCGCGAATT+TGG + chr7_1:73009598-73009617 None:intergenic 35.0%
ATTCGCGCAGTTAATACAAT+TGG - chr7_1:73009599-73009618 Msa1036590:intron 35.0%
TTGGTGTATTATTGATGCAC+TGG - chr7_1:73009618-73009637 Msa1036590:intron 35.0%
TTCTTCTTCCTGATCTTTGT+AGG - chr7_1:73009734-73009753 Msa1036590:intron 35.0%
ATTGACTACCTACAAAGATC+AGG + chr7_1:73009745-73009764 None:intergenic 35.0%
AACCCTAATGAGAAGAACTT+TGG - chr7_1:73009834-73009853 Msa1036590:intron 35.0%
TCTTGAGGGAGAATATTAGT+AGG + chr7_1:73009864-73009883 None:intergenic 35.0%
! ACCAACTTTGAAGATCTTGA+GGG + chr7_1:73009878-73009897 None:intergenic 35.0%
! AACCAACTTTGAAGATCTTG+AGG + chr7_1:73009879-73009898 None:intergenic 35.0%
! ACATGTTGGAATTTTCCATC+TGG + chr7_1:73009902-73009921 None:intergenic 35.0%
TTAGTGGAAGAAGAGAAATC+GGG + chr7_1:73009939-73009958 None:intergenic 35.0%
! TGTTGTTGATGAGAGATTAG+TGG + chr7_1:73009955-73009974 None:intergenic 35.0%
TGAAAATTCAGGAACCCTAT+TGG - chr7_1:73010031-73010050 Msa1036590:CDS 35.0%
TGAGATGCTTTCTTCCAATA+GGG + chr7_1:73010048-73010067 None:intergenic 35.0%
ATGAGATGCTTTCTTCCAAT+AGG + chr7_1:73010049-73010068 None:intergenic 35.0%
CCTTATGAATAGCTGCAAAA+TGG + chr7_1:73009106-73009125 None:intergenic 35.0%
! CCATTTTGCAGCTATTCATA+AGG - chr7_1:73009103-73009122 Msa1036590:CDS 35.0%
TTGCTGGAGTGCAAAAATAT+GGG + chr7_1:73009255-73009274 None:intergenic 35.0%
CTTAAACTGAAAACCCTAGA+TGG - chr7_1:73009298-73009317 Msa1036590:CDS 35.0%
ATGTAAGCGTATACCATCTA+GGG + chr7_1:73009314-73009333 None:intergenic 35.0%
AATGTAAGCGTATACCATCT+AGG + chr7_1:73009315-73009334 None:intergenic 35.0%
TGTAAGACTTGGCACATATT+TGG - chr7_1:73009501-73009520 Msa1036590:intron 35.0%
TTGTATTAACTGCGCGAATT+TGG + chr7_1:73009598-73009617 None:intergenic 35.0%
ATTCGCGCAGTTAATACAAT+TGG - chr7_1:73009599-73009618 Msa1036590:intron 35.0%
TTGGTGTATTATTGATGCAC+TGG - chr7_1:73009618-73009637 Msa1036590:intron 35.0%
TTCTTCTTCCTGATCTTTGT+AGG - chr7_1:73009734-73009753 Msa1036590:intron 35.0%
ATTGACTACCTACAAAGATC+AGG + chr7_1:73009745-73009764 None:intergenic 35.0%
AACCCTAATGAGAAGAACTT+TGG - chr7_1:73009834-73009853 Msa1036590:intron 35.0%
TCTTGAGGGAGAATATTAGT+AGG + chr7_1:73009864-73009883 None:intergenic 35.0%
! ACCAACTTTGAAGATCTTGA+GGG + chr7_1:73009878-73009897 None:intergenic 35.0%
! AACCAACTTTGAAGATCTTG+AGG + chr7_1:73009879-73009898 None:intergenic 35.0%
! ACATGTTGGAATTTTCCATC+TGG + chr7_1:73009902-73009921 None:intergenic 35.0%
TTAGTGGAAGAAGAGAAATC+GGG + chr7_1:73009939-73009958 None:intergenic 35.0%
! TGTTGTTGATGAGAGATTAG+TGG + chr7_1:73009955-73009974 None:intergenic 35.0%
TGAAAATTCAGGAACCCTAT+TGG - chr7_1:73010031-73010050 Msa1036590:CDS 35.0%
TGAGATGCTTTCTTCCAATA+GGG + chr7_1:73010048-73010067 None:intergenic 35.0%
ATGAGATGCTTTCTTCCAAT+AGG + chr7_1:73010049-73010068 None:intergenic 35.0%
TTTCCTCCTCAAGAATTTGC+AGG + chr7_1:73009030-73009049 None:intergenic 40.0%
TTGAGGAGGAAATGTGTTAG+AGG - chr7_1:73009038-73009057 Msa1036590:CDS 40.0%
CCTTGTTCATGGCAAAAGTA+AGG + chr7_1:73009077-73009096 None:intergenic 40.0%
!! CCTTACTTTTGCCATGAACA+AGG - chr7_1:73009074-73009093 Msa1036590:CDS 40.0%
GCAGCTATTCATAAGGTCTT+TGG - chr7_1:73009110-73009129 Msa1036590:CDS 40.0%
TGGGCAACACATCCATAAAT+TGG + chr7_1:73009236-73009255 None:intergenic 40.0%
GTTGCTGGAGTGCAAAAATA+TGG + chr7_1:73009256-73009275 None:intergenic 40.0%
!! TATTTTTGCACTCCAGCAAC+AGG - chr7_1:73009256-73009275 Msa1036590:CDS 40.0%
ATAAAATCACGATGGCATCG+AGG - chr7_1:73009542-73009561 Msa1036590:intron 40.0%
TCCCTCAAGATCTTCAAAGT+TGG - chr7_1:73009874-73009893 Msa1036590:CDS 40.0%
! TCTTCAAAGTTGGTTCCAGA+TGG - chr7_1:73009884-73009903 Msa1036590:CDS 40.0%
GTTTAGATCCATGAGAGTAG+TGG + chr7_1:73009997-73010016 None:intergenic 40.0%
CTCATGGATCTAAACCCTAT+TGG - chr7_1:73010002-73010021 Msa1036590:CDS 40.0%
CTGTCTTTGCATGTTGTCAA+AGG + chr7_1:73010111-73010130 None:intergenic 40.0%
TTGACAACATGCAAAGACAG+TGG - chr7_1:73010111-73010130 Msa1036590:CDS 40.0%
TTTCCTCCTCAAGAATTTGC+AGG + chr7_1:73009030-73009049 None:intergenic 40.0%
TTGAGGAGGAAATGTGTTAG+AGG - chr7_1:73009038-73009057 Msa1036590:CDS 40.0%
CCTTGTTCATGGCAAAAGTA+AGG + chr7_1:73009077-73009096 None:intergenic 40.0%
!! CCTTACTTTTGCCATGAACA+AGG - chr7_1:73009074-73009093 Msa1036590:CDS 40.0%
GCAGCTATTCATAAGGTCTT+TGG - chr7_1:73009110-73009129 Msa1036590:CDS 40.0%
TGGGCAACACATCCATAAAT+TGG + chr7_1:73009236-73009255 None:intergenic 40.0%
GTTGCTGGAGTGCAAAAATA+TGG + chr7_1:73009256-73009275 None:intergenic 40.0%
!! TATTTTTGCACTCCAGCAAC+AGG - chr7_1:73009256-73009275 Msa1036590:CDS 40.0%
ATAAAATCACGATGGCATCG+AGG - chr7_1:73009542-73009561 Msa1036590:intron 40.0%
TCCCTCAAGATCTTCAAAGT+TGG - chr7_1:73009874-73009893 Msa1036590:CDS 40.0%
! TCTTCAAAGTTGGTTCCAGA+TGG - chr7_1:73009884-73009903 Msa1036590:CDS 40.0%
GTTTAGATCCATGAGAGTAG+TGG + chr7_1:73009997-73010016 None:intergenic 40.0%
CTCATGGATCTAAACCCTAT+TGG - chr7_1:73010002-73010021 Msa1036590:CDS 40.0%
CTGTCTTTGCATGTTGTCAA+AGG + chr7_1:73010111-73010130 None:intergenic 40.0%
TTGACAACATGCAAAGACAG+TGG - chr7_1:73010111-73010130 Msa1036590:CDS 40.0%
AAGAATTTGCAGGCTCCACA+AGG + chr7_1:73009020-73009039 None:intergenic 45.0%
AATGGGTAGCACCTTGTTCA+TGG + chr7_1:73009088-73009107 None:intergenic 45.0%
CTTCACAACGATCAGTCACA+GGG + chr7_1:73009169-73009188 None:intergenic 45.0%
GAGATGAACAAACCTGTTGC+TGG + chr7_1:73009271-73009290 None:intergenic 45.0%
CCAAGTCTTACAGATCGACA+TGG + chr7_1:73009493-73009512 None:intergenic 45.0%
CCATGTCGATCTGTAAGACT+TGG - chr7_1:73009490-73009509 Msa1036590:intron 45.0%
! CACTGTGTTGATCTATGCAG+TGG - chr7_1:73009689-73009708 Msa1036590:intron 45.0%
TGAGAGAACAAGCAGCTCAA+AGG - chr7_1:73009787-73009806 Msa1036590:intron 45.0%
AAGAATTTGCAGGCTCCACA+AGG + chr7_1:73009020-73009039 None:intergenic 45.0%
AATGGGTAGCACCTTGTTCA+TGG + chr7_1:73009088-73009107 None:intergenic 45.0%
CTTCACAACGATCAGTCACA+GGG + chr7_1:73009169-73009188 None:intergenic 45.0%
GAGATGAACAAACCTGTTGC+TGG + chr7_1:73009271-73009290 None:intergenic 45.0%
CCAAGTCTTACAGATCGACA+TGG + chr7_1:73009493-73009512 None:intergenic 45.0%
CCATGTCGATCTGTAAGACT+TGG - chr7_1:73009490-73009509 Msa1036590:intron 45.0%
! CACTGTGTTGATCTATGCAG+TGG - chr7_1:73009689-73009708 Msa1036590:intron 45.0%
TGAGAGAACAAGCAGCTCAA+AGG - chr7_1:73009787-73009806 Msa1036590:intron 45.0%
!! ACTGGTTCTGGTTCTCCTTG+TGG - chr7_1:73009002-73009021 Msa1036590:CDS 50.0%
GTGGAGCCTGCAAATTCTTG+AGG - chr7_1:73009021-73009040 Msa1036590:CDS 50.0%
GAGCCTGCAAATTCTTGAGG+AGG - chr7_1:73009024-73009043 Msa1036590:CDS 50.0%
GCTTCACAACGATCAGTCAC+AGG + chr7_1:73009170-73009189 None:intergenic 50.0%
TGGGACTACCACTACTCTCA+TGG - chr7_1:73009986-73010005 Msa1036590:CDS 50.0%
!! ACTGGTTCTGGTTCTCCTTG+TGG - chr7_1:73009002-73009021 Msa1036590:CDS 50.0%
GTGGAGCCTGCAAATTCTTG+AGG - chr7_1:73009021-73009040 Msa1036590:CDS 50.0%
GAGCCTGCAAATTCTTGAGG+AGG - chr7_1:73009024-73009043 Msa1036590:CDS 50.0%
GCTTCACAACGATCAGTCAC+AGG + chr7_1:73009170-73009189 None:intergenic 50.0%
TGGGACTACCACTACTCTCA+TGG - chr7_1:73009986-73010005 Msa1036590:CDS 50.0%
CACAACGATCAGTCACAGGG+AGG + chr7_1:73009166-73009185 None:intergenic 55.0%
CACAACGATCAGTCACAGGG+AGG + chr7_1:73009166-73009185 None:intergenic 55.0%
! CAGTCACAGGGAGGTGTGCG+AGG + chr7_1:73009157-73009176 None:intergenic 65.0%
! CAGTCACAGGGAGGTGTGCG+AGG + chr7_1:73009157-73009176 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 73008996 73010145 73008996 ID=Msa1036590;Name=Msa1036590
chr7_1 mRNA 73008996 73010145 73008996 ID=Msa1036590-mRNA-1;Parent=Msa1036590;Name=Msa1036590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|223
chr7_1 exon 73009864 73010145 73009864 ID=Msa1036590-mRNA-1:exon:17905;Parent=Msa1036590-mRNA-1
chr7_1 exon 73008996 73009385 73008996 ID=Msa1036590-mRNA-1:exon:17904;Parent=Msa1036590-mRNA-1
chr7_1 CDS 73009864 73010145 73009864 ID=Msa1036590-mRNA-1:cds;Parent=Msa1036590-mRNA-1
chr7_1 CDS 73008996 73009385 73008996 ID=Msa1036590-mRNA-1:cds;Parent=Msa1036590-mRNA-1
Gene Sequence

>Msa1036590

ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGGAGGAAATGTGTTAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACCCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGTAATGTTTCAAAGCTCCTCGCACACCTCCCTGTGACTGATCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGATGTGTTGCCCATATTTTTGCACTCCAGCAACAGGTAGTCAATTTACAAGCACAGCTAGCTTTTCTGAGAGAACAAGCAGCTCAAAGGTGTCTCAATGCCCCAAATTCTGAAAACCCTAATGAGAAGAACTTTGGAAAACCTACTAATATTCTCCCTCAAGATCTTCAAAGTTGGTTCCAGATGGAAAATTCCAACATGTGTTCTCAATTTCTTCCCGATTTCTCTTCTTCCACTAATCTCTCATCAACAACACAATATTATAATGGGACTACCACTACTCTCATGGATCTAAACCCTATTGGAAACTATGAAAATTCAGGAACCCTATTGGAAGAAAGCATCTCATCATTTTCTACCTTTGATGAGCGATGTAATAATTCAATGTCCTTTGACAACATGCAAAGACAGTGGACCTATCAGTAA

Protein sequence

>Msa1036590

MMTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAFLREQAAQRCLNAPNSENPNEKNFGKPTNILPQDLQSWFQMENSNMCSQFLPDFSSSTNLSSTTQYYNGTTTTLMDLNPIGNYENSGTLLEESISSFSTFDERCNNSMSFDNMQRQWTYQ*