AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1377460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377460 MtrunA17_Chr7g0261031 96.875 224 6 1 1 223 1 224 8.64e-166 456
Msa1377460 MtrunA17_Chr1g0184271 71.204 191 45 5 8 194 12 196 1.16e-92 271
Msa1377460 MtrunA17_Chr7g0260971 73.585 106 28 0 3 108 9 114 2.51e-55 176
Msa1377460 MtrunA17_Chr5g0435641 55.782 147 61 2 2 145 1 146 2.14e-52 167
Msa1377460 MtrunA17_Chr8g0351701 50.000 176 65 3 8 162 23 196 7.98e-52 167
Msa1377460 MtrunA17_Chr1g0184281 70.192 104 31 0 5 108 12 115 2.31e-49 160
Msa1377460 MtrunA17_Chr7g0245871 71.287 101 29 0 8 108 27 127 3.65e-49 160
Msa1377460 MtrunA17_Chr8g0351721 66.667 105 35 0 6 110 16 120 1.01e-48 159
Msa1377460 MtrunA17_Chr6g0460951 63.889 108 39 0 7 114 39 146 8.25e-47 154
Msa1377460 MtrunA17_Chr7g0245861 68.817 93 27 2 5 95 9 101 2.56e-40 135
Msa1377460 MtrunA17_Chr3g0114061 43.919 148 80 2 1 148 1 145 2.19e-36 125
Msa1377460 MtrunA17_Chr5g0437571 45.625 160 72 5 4 162 2 147 4.84e-36 125
Msa1377460 MtrunA17_Chr2g0311601 56.000 100 43 1 4 103 9 107 2.94e-34 120
Msa1377460 MtrunA17_Chr4g0043421 52.830 106 49 1 4 109 11 115 7.05e-34 119
Msa1377460 MtrunA17_Chr3g0106101 44.516 155 79 6 4 157 2 150 8.00e-34 119
Msa1377460 MtrunA17_Chr7g0227511 56.122 98 42 1 5 102 8 104 2.61e-33 118
Msa1377460 MtrunA17_Chr5g0437401 41.250 160 76 4 5 164 8 149 6.30e-33 117
Msa1377460 MtrunA17_Chr3g0097221 50.877 114 55 1 2 115 1 113 7.55e-33 120
Msa1377460 MtrunA17_Chr4g0058651 57.292 96 40 1 7 102 10 104 1.14e-32 117
Msa1377460 MtrunA17_Chr5g0438091 53.398 103 45 2 7 108 38 138 1.32e-32 117
Msa1377460 MtrunA17_Chr3g0117121 56.250 96 41 1 7 102 9 103 5.49e-32 115
Msa1377460 MtrunA17_Chr3g0129071 55.446 101 42 2 7 106 46 144 8.80e-32 115
Msa1377460 MtrunA17_Chr6g0460941 59.091 88 36 0 8 95 7 94 2.08e-31 110
Msa1377460 MtrunA17_Chr5g0402611 51.818 110 52 1 1 110 1 109 2.56e-31 116
Msa1377460 MtrunA17_Chr3g0113891 49.515 103 51 1 5 107 11 112 3.93e-31 112
Msa1377460 MtrunA17_Chr6g0449641 53.061 98 45 1 5 102 6 102 4.60e-31 111
Msa1377460 MtrunA17_Chr3g0115431 48.182 110 56 1 1 110 2 110 3.94e-30 111
Msa1377460 MtrunA17_Chr6g0449651 49.524 105 49 2 1 102 57 160 5.54e-29 107
Msa1377460 MtrunA17_Chr4g0030001 53.061 98 44 2 7 103 23 119 1.89e-27 103
Msa1377460 MtrunA17_Chr5g0432451 55.340 103 43 2 7 108 42 142 1.25e-26 102
Msa1377460 MtrunA17_Chr1g0200201 51.579 95 45 1 9 103 73 166 1.66e-26 102
Msa1377460 MtrunA17_Chr8g0353981 55.172 87 38 1 2 88 1 86 2.47e-25 99.0
Msa1377460 MtrunA17_Chr5g0444351 40.000 140 77 3 9 148 6 138 4.52e-25 95.9
Msa1377460 MtrunA17_Chr7g0225111 43.269 104 58 1 7 110 4 106 2.41e-24 93.2
Msa1377460 MtrunA17_Chr8g0374591 40.385 104 61 1 8 111 8 110 3.73e-19 80.1
Msa1377460 MtrunA17_Chr8g0374601 37.500 104 64 1 8 111 26 128 1.10e-18 82.4
Msa1377460 MtrunA17_Chr8g0342351 37.255 102 63 1 9 110 13 113 2.62e-18 80.9
Msa1377460 MtrunA17_Chr4g0059901 37.143 105 65 1 4 108 6 109 6.46e-18 80.1
Msa1377460 MtrunA17_Chr2g0330201 34.579 107 69 1 4 110 15 120 3.62e-17 78.6
Msa1377460 MtrunA17_Chr6g0452691 38.636 88 52 2 2 88 3 89 1.40e-15 72.0
Msa1377460 MtrunA17_Chr4g0040831 27.979 193 115 6 4 178 11 197 1.42e-15 72.4
Msa1377460 MtrunA17_Chr6g0452661 42.353 85 45 3 9 90 10 93 3.02e-15 72.4
Msa1377460 MtrunA17_Chr8g0374581 35.294 102 64 2 8 108 8 108 6.89e-15 71.2
Msa1377460 MtrunA17_Chr6g0452671 34.906 106 65 2 9 111 12 116 1.20e-14 70.1
Msa1377460 MtrunA17_Chr2g0326041 54.167 48 21 1 7 54 32 78 8.17e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377460 AT3G58190.1 81.356 118 20 1 8 123 11 128 1.09e-70 215
Msa1377460 AT2G42440.1 74.046 131 32 1 2 130 1 131 1.07e-68 211
Msa1377460 AT2G31310.1 61.972 142 53 1 2 143 1 141 5.82e-60 187
Msa1377460 AT2G42430.1 72.897 107 29 0 4 110 11 117 5.81e-54 173
Msa1377460 AT4G00210.1 58.333 132 54 1 3 133 6 137 2.26e-51 166
Msa1377460 AT3G03760.1 71.569 102 29 0 7 108 50 151 5.20e-50 164
Msa1377460 AT5G06080.1 68.224 107 34 0 2 108 1 107 1.08e-49 160
Msa1377460 AT2G45420.1 74.000 100 26 0 11 110 40 139 2.86e-49 162
Msa1377460 AT4G00220.1 70.000 100 30 0 11 110 20 119 1.85e-46 154
Msa1377460 AT2G45410.1 60.000 115 43 2 11 122 19 133 5.32e-42 141
Msa1377460 AT3G27650.1 57.292 96 40 1 7 102 38 132 6.00e-33 117
Msa1377460 AT2G30130.1 51.695 118 53 3 2 118 1 115 1.54e-32 117
Msa1377460 AT5G63090.4 40.642 187 88 6 7 193 10 173 2.57e-32 116
Msa1377460 AT5G63090.3 40.642 187 88 6 7 193 10 173 2.57e-32 116
Msa1377460 AT5G63090.2 40.642 187 88 6 7 193 10 173 2.57e-32 116
Msa1377460 AT5G63090.1 40.642 187 88 6 7 193 10 173 2.57e-32 116
Msa1377460 AT1G07900.1 53.608 97 44 1 7 103 32 127 1.04e-30 112
Msa1377460 AT3G11090.1 50.980 102 49 1 5 106 8 108 1.17e-30 111
Msa1377460 AT1G31320.1 53.261 92 42 1 4 95 9 99 1.25e-30 111
Msa1377460 AT1G16530.1 48.305 118 58 3 7 122 13 129 2.40e-30 110
Msa1377460 AT2G28500.1 53.608 97 44 1 7 103 54 149 6.29e-30 111
Msa1377460 AT5G66870.1 51.376 109 52 1 2 110 1 108 1.59e-29 112
Msa1377460 AT2G30340.1 51.456 103 47 2 7 108 51 151 5.43e-29 109
Msa1377460 AT2G30340.2 51.456 103 47 2 7 108 52 152 5.79e-29 109
Msa1377460 AT2G23660.2 49.020 102 51 1 7 108 4 104 7.61e-27 105
Msa1377460 AT2G23660.3 49.020 102 51 1 7 108 4 104 7.61e-27 105
Msa1377460 AT2G23660.1 49.020 102 51 1 7 108 4 104 7.61e-27 105
Msa1377460 AT3G26660.1 46.316 95 50 1 9 103 6 99 3.73e-26 98.6
Msa1377460 AT1G65620.1 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1377460 AT1G65620.4 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1377460 AT1G65620.3 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1377460 AT1G65620.5 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1377460 AT1G65620.2 56.977 86 36 1 3 88 4 88 6.31e-26 100
Msa1377460 AT3G26620.1 46.316 95 50 1 9 103 6 99 7.16e-26 97.8
Msa1377460 AT2G40470.2 54.369 103 44 2 7 108 19 119 9.64e-26 99.8
Msa1377460 AT2G40470.1 54.369 103 44 2 7 108 44 144 1.36e-25 99.8
Msa1377460 AT3G50510.1 42.478 113 64 1 2 114 6 117 4.20e-25 97.8
Msa1377460 AT3G50510.2 42.478 113 64 1 2 114 6 117 4.20e-25 97.8
Msa1377460 AT3G13850.1 38.136 118 63 3 9 118 37 152 1.31e-18 82.4
Msa1377460 AT1G72980.1 36.190 105 66 1 4 108 9 112 2.39e-16 75.1
Msa1377460 AT5G35900.1 38.235 102 62 1 9 110 6 106 6.83e-16 73.9
Msa1377460 AT3G47870.1 32.381 105 70 1 4 108 32 135 3.00e-14 70.9
Msa1377460 AT1G06280.1 38.667 75 45 1 9 83 25 98 4.30e-13 66.2

Find 47 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACTTCAAGATCCAATTTA+TGG 0.151814 tig0019933:+23305 Msa1377460:CDS
TTTCCAAAGTTCTTCTCATT+AGG 0.257962 tig0019933:-23913 None:intergenic
CCTTATGAATAGCTGCAAAA+TGG 0.260543 tig0019933:-23187 None:intergenic
ATTAGTGGAAGAAGAGAAAT+CGG 0.262535 tig0019933:-24013 None:intergenic
GCAGCTATTCATAAGGTCTT+TGG 0.287235 tig0019933:+23194 Msa1377460:CDS
TGGGCAACACATCCATAAAT+TGG 0.288880 tig0019933:-23317 None:intergenic
TCAACAACACAATATTATAA+TGG 0.305675 tig0019933:+24042 Msa1377460:CDS
TTCCAAAGTTCTTCTCATTA+GGG 0.315481 tig0019933:-23912 None:intergenic
CTCATGGATCTAAACCCTAT+TGG 0.344271 tig0019933:+24078 Msa1377460:CDS
ATTGGAAACTATGAAAATTC+AGG 0.345302 tig0019933:+24096 Msa1377460:CDS
TTTCCTCCTCAAGAATTTGC+AGG 0.357584 tig0019933:-23111 None:intergenic
ATGAGATGCTTTCTTCCAAT+AGG 0.363922 tig0019933:-24122 None:intergenic
TGAAAATTCAGGAACCCTAT+TGG 0.376897 tig0019933:+24107 Msa1377460:CDS
ACGGCCATGATGACTGGTTC+TGG 0.395558 tig0019933:+23074 None:intergenic
CAACAACACAATATTATAAT+GGG 0.395664 tig0019933:+24043 Msa1377460:CDS
TTGAGGAGGAAATGTGTTAG+AGG 0.402110 tig0019933:+23122 Msa1377460:CDS
TGAGATGCTTTCTTCCAATA+GGG 0.428947 tig0019933:-24121 None:intergenic
TCTTGAGGGAGAATATTAGT+AGG 0.429657 tig0019933:-23937 None:intergenic
GAGATGAACAAACCTGTTGC+TGG 0.430997 tig0019933:-23352 None:intergenic
CTTATGAATAGCTGCAAAAT+GGG 0.434815 tig0019933:-23186 None:intergenic
AACCCTAATGAGAAGAACTT+TGG 0.435631 tig0019933:+23910 Msa1377460:CDS
ATTCTTACGGCCATGATGAC+TGG 0.446907 tig0019933:+23068 None:intergenic
AATGGGTAGCACCTTGTTCA+TGG 0.448967 tig0019933:-23169 None:intergenic
TGTTGTTGATGAGAGATTAG+TGG 0.463491 tig0019933:-24028 None:intergenic
TCCCTCAAGATCTTCAAAGT+TGG 0.463884 tig0019933:+23950 Msa1377460:CDS
CAAATTAGCCACTTACTGAT+AGG 0.482945 tig0019933:-24211 None:intergenic
ACTGGTTCTGGTTCTCCTTG+TGG 0.494488 tig0019933:+23086 Msa1377460:CDS
TGGGACTACCACTACTCTCA+TGG 0.512301 tig0019933:+24062 Msa1377460:CDS
TCTTCAAAGTTGGTTCCAGA+TGG 0.523638 tig0019933:+23960 Msa1377460:CDS
CTGTCTTTGCATGTTGTCAA+AGG 0.524030 tig0019933:-24184 None:intergenic
CCTTGTTCATGGCAAAAGTA+AGG 0.524451 tig0019933:-23158 None:intergenic
AACCAACTTTGAAGATCTTG+AGG 0.528680 tig0019933:-23952 None:intergenic
GCTTCACAACGATCAGTCAC+AGG 0.531664 tig0019933:-23251 None:intergenic
TTAGTGGAAGAAGAGAAATC+GGG 0.531706 tig0019933:-24012 None:intergenic
ACCAACTTTGAAGATCTTGA+GGG 0.534056 tig0019933:-23951 None:intergenic
GTGGAGCCTGCAAATTCTTG+AGG 0.534107 tig0019933:+23105 Msa1377460:CDS
AAGAAATTGAGAACACATGT+TGG 0.541417 tig0019933:-23989 None:intergenic
ATTATTACATCGCTCATCAA+AGG 0.565424 tig0019933:-24154 None:intergenic
AGAACCAGAACCAGTCATCA+TGG 0.567393 tig0019933:-23078 None:intergenic
TGAGAGAACAAGCAGCTCAA+AGG 0.584503 tig0019933:+23863 Msa1377460:CDS
AAGAATTTGCAGGCTCCACA+AGG 0.586151 tig0019933:-23101 None:intergenic
CAGTCACAGGGAGGTGTGCG+AGG 0.596818 tig0019933:-23238 None:intergenic
GTTTAGATCCATGAGAGTAG+TGG 0.619212 tig0019933:-24070 None:intergenic
GAGCCTGCAAATTCTTGAGG+AGG 0.637179 tig0019933:+23108 Msa1377460:CDS
CTTCACAACGATCAGTCACA+GGG 0.652040 tig0019933:-23250 None:intergenic
TTGACAACATGCAAAGACAG+TGG 0.686531 tig0019933:+24187 Msa1377460:CDS
CACAACGATCAGTCACAGGG+AGG 0.754403 tig0019933:-23247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTCTTTTTTATATATAAAC+TGG - tig0019933:23490-23509 None:intergenic 15.0%
!!! TTGAGTTTGTAATAAAATTT+TGG + tig0019933:23718-23737 Msa1377460:intron 15.0%
!!! ACTCTTTTTTATATATAAAC+TGG - tig0019933:23490-23509 None:intergenic 15.0%
!!! TTGAGTTTGTAATAAAATTT+TGG + tig0019933:23718-23737 Msa1377460:intron 15.0%
!!! ATTAATTAACAAGAGTATCA+AGG + tig0019933:23459-23478 Msa1377460:intron 20.0%
!!! AGGTCTTAATATTGATTTTT+TGG - tig0019933:23522-23541 None:intergenic 20.0%
!! TATATTTGATAAAATCACGA+TGG + tig0019933:23610-23629 Msa1377460:intron 20.0%
!! TCAACAACACAATATTATAA+TGG + tig0019933:24042-24061 Msa1377460:CDS 20.0%
!! CAACAACACAATATTATAAT+GGG + tig0019933:24043-24062 Msa1377460:CDS 20.0%
!!! AATTTTCATAGTTTCCAATA+GGG - tig0019933:24095-24114 None:intergenic 20.0%
!!! ATTAATTAACAAGAGTATCA+AGG + tig0019933:23459-23478 Msa1377460:intron 20.0%
!!! AGGTCTTAATATTGATTTTT+TGG - tig0019933:23522-23541 None:intergenic 20.0%
!! TATATTTGATAAAATCACGA+TGG + tig0019933:23610-23629 Msa1377460:intron 20.0%
!! TCAACAACACAATATTATAA+TGG + tig0019933:24042-24061 Msa1377460:CDS 20.0%
!! CAACAACACAATATTATAAT+GGG + tig0019933:24043-24062 Msa1377460:CDS 20.0%
!!! AATTTTCATAGTTTCCAATA+GGG - tig0019933:24095-24114 None:intergenic 20.0%
!! TATGTCATGTTGATTGTATT+AGG - tig0019933:23542-23561 None:intergenic 25.0%
!! GAATTTTCATAGTTTCCAAT+AGG - tig0019933:24096-24115 None:intergenic 25.0%
! ATTGGAAACTATGAAAATTC+AGG + tig0019933:24096-24115 Msa1377460:CDS 25.0%
!! TATGTCATGTTGATTGTATT+AGG - tig0019933:23542-23561 None:intergenic 25.0%
!! GAATTTTCATAGTTTCCAAT+AGG - tig0019933:24096-24115 None:intergenic 25.0%
! ATTGGAAACTATGAAAATTC+AGG + tig0019933:24096-24115 Msa1377460:CDS 25.0%
CTTATGAATAGCTGCAAAAT+GGG - tig0019933:23189-23208 None:intergenic 30.0%
AGACTTCAAGATCCAATTTA+TGG + tig0019933:23305-23324 Msa1377460:CDS 30.0%
! ATTAGGGTTTTCAGAATTTG+GGG - tig0019933:23899-23918 None:intergenic 30.0%
! CATTAGGGTTTTCAGAATTT+GGG - tig0019933:23900-23919 None:intergenic 30.0%
! TCATTAGGGTTTTCAGAATT+TGG - tig0019933:23901-23920 None:intergenic 30.0%
TTCCAAAGTTCTTCTCATTA+GGG - tig0019933:23915-23934 None:intergenic 30.0%
TTTCCAAAGTTCTTCTCATT+AGG - tig0019933:23916-23935 None:intergenic 30.0%
AAGAAATTGAGAACACATGT+TGG - tig0019933:23992-24011 None:intergenic 30.0%
ATTAGTGGAAGAAGAGAAAT+CGG - tig0019933:24016-24035 None:intergenic 30.0%
ATTATTACATCGCTCATCAA+AGG - tig0019933:24157-24176 None:intergenic 30.0%
CTTATGAATAGCTGCAAAAT+GGG - tig0019933:23189-23208 None:intergenic 30.0%
AGACTTCAAGATCCAATTTA+TGG + tig0019933:23305-23324 Msa1377460:CDS 30.0%
! ATTAGGGTTTTCAGAATTTG+GGG - tig0019933:23899-23918 None:intergenic 30.0%
! CATTAGGGTTTTCAGAATTT+GGG - tig0019933:23900-23919 None:intergenic 30.0%
! TCATTAGGGTTTTCAGAATT+TGG - tig0019933:23901-23920 None:intergenic 30.0%
TTCCAAAGTTCTTCTCATTA+GGG - tig0019933:23915-23934 None:intergenic 30.0%
TTTCCAAAGTTCTTCTCATT+AGG - tig0019933:23916-23935 None:intergenic 30.0%
AAGAAATTGAGAACACATGT+TGG - tig0019933:23992-24011 None:intergenic 30.0%
ATTAGTGGAAGAAGAGAAAT+CGG - tig0019933:24016-24035 None:intergenic 30.0%
ATTATTACATCGCTCATCAA+AGG - tig0019933:24157-24176 None:intergenic 30.0%
CCTTATGAATAGCTGCAAAA+TGG - tig0019933:23190-23209 None:intergenic 35.0%
! CCATTTTGCAGCTATTCATA+AGG + tig0019933:23187-23206 Msa1377460:CDS 35.0%
TTGCTGGAGTGCAAAAATAT+GGG - tig0019933:23339-23358 None:intergenic 35.0%
CTTAAACTGAAAACCCTAGA+TGG + tig0019933:23382-23401 Msa1377460:intron 35.0%
ATGTAAGCGTATACCATCTA+GGG - tig0019933:23398-23417 None:intergenic 35.0%
AATGTAAGCGTATACCATCT+AGG - tig0019933:23399-23418 None:intergenic 35.0%
TGTAAGACTTGGCACATATT+TGG + tig0019933:23577-23596 Msa1377460:intron 35.0%
TTGTATTAACTGCGCGAATT+TGG - tig0019933:23674-23693 None:intergenic 35.0%
ATTCGCGCAGTTAATACAAT+TGG + tig0019933:23675-23694 Msa1377460:intron 35.0%
TTGGTGTATTATTGATGCAC+TGG + tig0019933:23694-23713 Msa1377460:intron 35.0%
TTCTTCTTCCTGATCTTTGT+AGG + tig0019933:23810-23829 Msa1377460:intron 35.0%
ATTGACTACCTACAAAGATC+AGG - tig0019933:23821-23840 None:intergenic 35.0%
AACCCTAATGAGAAGAACTT+TGG + tig0019933:23910-23929 Msa1377460:CDS 35.0%
TCTTGAGGGAGAATATTAGT+AGG - tig0019933:23940-23959 None:intergenic 35.0%
! ACCAACTTTGAAGATCTTGA+GGG - tig0019933:23954-23973 None:intergenic 35.0%
! AACCAACTTTGAAGATCTTG+AGG - tig0019933:23955-23974 None:intergenic 35.0%
! ACATGTTGGAATTTTCCATC+TGG - tig0019933:23978-23997 None:intergenic 35.0%
TTAGTGGAAGAAGAGAAATC+GGG - tig0019933:24015-24034 None:intergenic 35.0%
! TGTTGTTGATGAGAGATTAG+TGG - tig0019933:24031-24050 None:intergenic 35.0%
TGAAAATTCAGGAACCCTAT+TGG + tig0019933:24107-24126 Msa1377460:CDS 35.0%
TGAGATGCTTTCTTCCAATA+GGG - tig0019933:24124-24143 None:intergenic 35.0%
ATGAGATGCTTTCTTCCAAT+AGG - tig0019933:24125-24144 None:intergenic 35.0%
CCTTATGAATAGCTGCAAAA+TGG - tig0019933:23190-23209 None:intergenic 35.0%
! CCATTTTGCAGCTATTCATA+AGG + tig0019933:23187-23206 Msa1377460:CDS 35.0%
TTGCTGGAGTGCAAAAATAT+GGG - tig0019933:23339-23358 None:intergenic 35.0%
CTTAAACTGAAAACCCTAGA+TGG + tig0019933:23382-23401 Msa1377460:intron 35.0%
ATGTAAGCGTATACCATCTA+GGG - tig0019933:23398-23417 None:intergenic 35.0%
AATGTAAGCGTATACCATCT+AGG - tig0019933:23399-23418 None:intergenic 35.0%
TGTAAGACTTGGCACATATT+TGG + tig0019933:23577-23596 Msa1377460:intron 35.0%
TTGTATTAACTGCGCGAATT+TGG - tig0019933:23674-23693 None:intergenic 35.0%
ATTCGCGCAGTTAATACAAT+TGG + tig0019933:23675-23694 Msa1377460:intron 35.0%
TTGGTGTATTATTGATGCAC+TGG + tig0019933:23694-23713 Msa1377460:intron 35.0%
TTCTTCTTCCTGATCTTTGT+AGG + tig0019933:23810-23829 Msa1377460:intron 35.0%
ATTGACTACCTACAAAGATC+AGG - tig0019933:23821-23840 None:intergenic 35.0%
AACCCTAATGAGAAGAACTT+TGG + tig0019933:23910-23929 Msa1377460:CDS 35.0%
TCTTGAGGGAGAATATTAGT+AGG - tig0019933:23940-23959 None:intergenic 35.0%
! ACCAACTTTGAAGATCTTGA+GGG - tig0019933:23954-23973 None:intergenic 35.0%
! AACCAACTTTGAAGATCTTG+AGG - tig0019933:23955-23974 None:intergenic 35.0%
! ACATGTTGGAATTTTCCATC+TGG - tig0019933:23978-23997 None:intergenic 35.0%
TTAGTGGAAGAAGAGAAATC+GGG - tig0019933:24015-24034 None:intergenic 35.0%
! TGTTGTTGATGAGAGATTAG+TGG - tig0019933:24031-24050 None:intergenic 35.0%
TGAAAATTCAGGAACCCTAT+TGG + tig0019933:24107-24126 Msa1377460:CDS 35.0%
TGAGATGCTTTCTTCCAATA+GGG - tig0019933:24124-24143 None:intergenic 35.0%
ATGAGATGCTTTCTTCCAAT+AGG - tig0019933:24125-24144 None:intergenic 35.0%
TTTCCTCCTCAAGAATTTGC+AGG - tig0019933:23114-23133 None:intergenic 40.0%
TTGAGGAGGAAATGTGTTAG+AGG + tig0019933:23122-23141 Msa1377460:CDS 40.0%
CCTTGTTCATGGCAAAAGTA+AGG - tig0019933:23161-23180 None:intergenic 40.0%
!! CCTTACTTTTGCCATGAACA+AGG + tig0019933:23158-23177 Msa1377460:CDS 40.0%
GCAGCTATTCATAAGGTCTT+TGG + tig0019933:23194-23213 Msa1377460:CDS 40.0%
TGGGCAACACATCCATAAAT+TGG - tig0019933:23320-23339 None:intergenic 40.0%
GTTGCTGGAGTGCAAAAATA+TGG - tig0019933:23340-23359 None:intergenic 40.0%
!! TATTTTTGCACTCCAGCAAC+AGG + tig0019933:23340-23359 Msa1377460:CDS 40.0%
ATAAAATCACGATGGCATCG+AGG + tig0019933:23618-23637 Msa1377460:intron 40.0%
TCCCTCAAGATCTTCAAAGT+TGG + tig0019933:23950-23969 Msa1377460:CDS 40.0%
! TCTTCAAAGTTGGTTCCAGA+TGG + tig0019933:23960-23979 Msa1377460:CDS 40.0%
GTTTAGATCCATGAGAGTAG+TGG - tig0019933:24073-24092 None:intergenic 40.0%
CTCATGGATCTAAACCCTAT+TGG + tig0019933:24078-24097 Msa1377460:CDS 40.0%
CTGTCTTTGCATGTTGTCAA+AGG - tig0019933:24187-24206 None:intergenic 40.0%
TTGACAACATGCAAAGACAG+TGG + tig0019933:24187-24206 Msa1377460:CDS 40.0%
TTTCCTCCTCAAGAATTTGC+AGG - tig0019933:23114-23133 None:intergenic 40.0%
TTGAGGAGGAAATGTGTTAG+AGG + tig0019933:23122-23141 Msa1377460:CDS 40.0%
CCTTGTTCATGGCAAAAGTA+AGG - tig0019933:23161-23180 None:intergenic 40.0%
!! CCTTACTTTTGCCATGAACA+AGG + tig0019933:23158-23177 Msa1377460:CDS 40.0%
GCAGCTATTCATAAGGTCTT+TGG + tig0019933:23194-23213 Msa1377460:CDS 40.0%
TGGGCAACACATCCATAAAT+TGG - tig0019933:23320-23339 None:intergenic 40.0%
GTTGCTGGAGTGCAAAAATA+TGG - tig0019933:23340-23359 None:intergenic 40.0%
!! TATTTTTGCACTCCAGCAAC+AGG + tig0019933:23340-23359 Msa1377460:CDS 40.0%
ATAAAATCACGATGGCATCG+AGG + tig0019933:23618-23637 Msa1377460:intron 40.0%
TCCCTCAAGATCTTCAAAGT+TGG + tig0019933:23950-23969 Msa1377460:CDS 40.0%
! TCTTCAAAGTTGGTTCCAGA+TGG + tig0019933:23960-23979 Msa1377460:CDS 40.0%
GTTTAGATCCATGAGAGTAG+TGG - tig0019933:24073-24092 None:intergenic 40.0%
CTCATGGATCTAAACCCTAT+TGG + tig0019933:24078-24097 Msa1377460:CDS 40.0%
CTGTCTTTGCATGTTGTCAA+AGG - tig0019933:24187-24206 None:intergenic 40.0%
TTGACAACATGCAAAGACAG+TGG + tig0019933:24187-24206 Msa1377460:CDS 40.0%
AAGAATTTGCAGGCTCCACA+AGG - tig0019933:23104-23123 None:intergenic 45.0%
AATGGGTAGCACCTTGTTCA+TGG - tig0019933:23172-23191 None:intergenic 45.0%
CTTCACAACGATCAGTCACA+GGG - tig0019933:23253-23272 None:intergenic 45.0%
GAGATGAACAAACCTGTTGC+TGG - tig0019933:23355-23374 None:intergenic 45.0%
CCAAGTCTTACAGATCGACA+TGG - tig0019933:23569-23588 None:intergenic 45.0%
CCATGTCGATCTGTAAGACT+TGG + tig0019933:23566-23585 Msa1377460:intron 45.0%
! CACTGTGTTGATCTATGCAG+TGG + tig0019933:23765-23784 Msa1377460:intron 45.0%
TGAGAGAACAAGCAGCTCAA+AGG + tig0019933:23863-23882 Msa1377460:CDS 45.0%
AAGAATTTGCAGGCTCCACA+AGG - tig0019933:23104-23123 None:intergenic 45.0%
AATGGGTAGCACCTTGTTCA+TGG - tig0019933:23172-23191 None:intergenic 45.0%
CTTCACAACGATCAGTCACA+GGG - tig0019933:23253-23272 None:intergenic 45.0%
GAGATGAACAAACCTGTTGC+TGG - tig0019933:23355-23374 None:intergenic 45.0%
CCAAGTCTTACAGATCGACA+TGG - tig0019933:23569-23588 None:intergenic 45.0%
CCATGTCGATCTGTAAGACT+TGG + tig0019933:23566-23585 Msa1377460:intron 45.0%
! CACTGTGTTGATCTATGCAG+TGG + tig0019933:23765-23784 Msa1377460:intron 45.0%
TGAGAGAACAAGCAGCTCAA+AGG + tig0019933:23863-23882 Msa1377460:CDS 45.0%
!! ACTGGTTCTGGTTCTCCTTG+TGG + tig0019933:23086-23105 Msa1377460:CDS 50.0%
GTGGAGCCTGCAAATTCTTG+AGG + tig0019933:23105-23124 Msa1377460:CDS 50.0%
GAGCCTGCAAATTCTTGAGG+AGG + tig0019933:23108-23127 Msa1377460:CDS 50.0%
GCTTCACAACGATCAGTCAC+AGG - tig0019933:23254-23273 None:intergenic 50.0%
TGGGACTACCACTACTCTCA+TGG + tig0019933:24062-24081 Msa1377460:CDS 50.0%
!! ACTGGTTCTGGTTCTCCTTG+TGG + tig0019933:23086-23105 Msa1377460:CDS 50.0%
GTGGAGCCTGCAAATTCTTG+AGG + tig0019933:23105-23124 Msa1377460:CDS 50.0%
GAGCCTGCAAATTCTTGAGG+AGG + tig0019933:23108-23127 Msa1377460:CDS 50.0%
GCTTCACAACGATCAGTCAC+AGG - tig0019933:23254-23273 None:intergenic 50.0%
TGGGACTACCACTACTCTCA+TGG + tig0019933:24062-24081 Msa1377460:CDS 50.0%
CACAACGATCAGTCACAGGG+AGG - tig0019933:23250-23269 None:intergenic 55.0%
CACAACGATCAGTCACAGGG+AGG - tig0019933:23250-23269 None:intergenic 55.0%
! CAGTCACAGGGAGGTGTGCG+AGG - tig0019933:23241-23260 None:intergenic 65.0%
! CAGTCACAGGGAGGTGTGCG+AGG - tig0019933:23241-23260 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019933 gene 23080 24221 23080 ID=Msa1377460;Name=Msa1377460
tig0019933 mRNA 23080 24221 23080 ID=Msa1377460-mRNA-1;Parent=Msa1377460;Name=Msa1377460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|223
tig0019933 exon 23080 23361 23080 ID=Msa1377460-mRNA-1:exon:5639;Parent=Msa1377460-mRNA-1
tig0019933 exon 23832 24221 23832 ID=Msa1377460-mRNA-1:exon:5640;Parent=Msa1377460-mRNA-1
tig0019933 CDS 23080 23361 23080 ID=Msa1377460-mRNA-1:cds;Parent=Msa1377460-mRNA-1
tig0019933 CDS 23832 24221 23832 ID=Msa1377460-mRNA-1:cds;Parent=Msa1377460-mRNA-1
Gene Sequence

>Msa1377460

ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGGAGGAAATGTGTTAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACCCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGTAATGTTTCAAAGCTCCTCGCACACCTCCCTGTGACTGATCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGATGTGTTGCCCATATTTTTGCACTCCAGCAACAGGTAGTCAATTTACAAGCACAGCTAGCTTTTCTGAGAGAACAAGCAGCTCAAAGGTGTCTCAATGCCCCAAATTCTGAAAACCCTAATGAGAAGAACTTTGGAAAACCTACTAATATTCTCCCTCAAGATCTTCAAAGTTGGTTCCAGATGGAAAATTCCAACATGTGTTCTCAATTTCTTCCCGATTTCTCTTCTTCCACTAATCTCTCATCAACAACACAATATTATAATGGGACTACCACTACTCTCATGGATCTAAACCCTATTGGAAACTATGAAAATTCAGGAACCCTATTGGAAGAAAGCATCTCATCATTTTCTACCTTTGATGAGCGATGTAATAATTCAATGTCCTTTGACAACATGCAAAGACAGTGGACCTATCAGTAA

Protein sequence

>Msa1377460

MMTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAFLREQAAQRCLNAPNSENPNEKNFGKPTNILPQDLQSWFQMENSNMCSQFLPDFSSSTNLSSTTQYYNGTTTTLMDLNPIGNYENSGTLLEESISSFSTFDERCNNSMSFDNMQRQWTYQ*