AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369180 MtrunA17_Chr8g0384321 96.507 229 8 0 1 229 1 229 1.15e-163 451
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 53 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTATTACCTGCCTATT+GGG 0.284290 tig0018755:+129312 Msa1369180:three_prime_UTR
TACATTTGAAGTTGTAATAA+AGG 0.286030 tig0018755:-129125 None:intergenic
TCTCTTTCAGAACGAGTTAC+TGG 0.303046 tig0018755:-127253 None:intergenic
TATGAAAACTTTCTCAGGTT+TGG 0.308100 tig0018755:+129101 Msa1369180:three_prime_UTR
CTCTGTCACCAATTTCATAT+AGG 0.329797 tig0018755:-128697 None:intergenic
TTGTTCTATTACCTGCCTAT+TGG 0.338078 tig0018755:+129311 Msa1369180:three_prime_UTR
GGAGAAAGGTAGAGAGTTGC+AGG 0.344873 tig0018755:+127324 Msa1369180:CDS
GCACTAGCCCTATATGAAAT+TGG 0.346710 tig0018755:+128689 Msa1369180:CDS
GAAGAGTTGCAATTGTAAAC+TGG 0.356751 tig0018755:-128930 None:intergenic
CAGGCTCTTGGTGACTTCAA+TGG 0.375521 tig0018755:+127343 Msa1369180:CDS
AGCATGCTTATCTGCATATA+AGG 0.380222 tig0018755:-128890 None:intergenic
TCTGTCACCAATTTCATATA+GGG 0.381685 tig0018755:-128696 None:intergenic
AGGAAGTGAAGTGAAAAGTA+TGG 0.383576 tig0018755:+127003 Msa1369180:exon
TCGCAATGGAAGATTGGAAA+TGG 0.391615 tig0018755:-127056 None:intergenic
TTCTCGTGGTGTTGAGTTGT+TGG 0.401266 tig0018755:+127303 Msa1369180:CDS
GACGTTTCAATATCACTAAA+GGG 0.407097 tig0018755:+128743 Msa1369180:CDS
ATGATTTCGCAATGGAAGAT+TGG 0.409414 tig0018755:-127062 None:intergenic
GAGGTAGAAAGCAAAATATC+AGG 0.447983 tig0018755:+126983 Msa1369180:five_prime_UTR
AGTTATATGAAAACTTTCTC+AGG 0.456744 tig0018755:+129096 Msa1369180:three_prime_UTR
AAAGCATTGAATATTTGATA+AGG 0.457295 tig0018755:+126961 None:intergenic
AAAAGAATTCTGAATTCTGA+TGG 0.476340 tig0018755:-127089 None:intergenic
AGACGTTTCAATATCACTAA+AGG 0.477307 tig0018755:+128742 Msa1369180:CDS
CGCAATGGAAGATTGGAAAT+GGG 0.484979 tig0018755:-127055 None:intergenic
AAGCAGGAAAAGGAATGAAA+AGG 0.487058 tig0018755:-127192 None:intergenic
ATGGTGTCTTTGATGTTGCA+TGG 0.488474 tig0018755:+129233 Msa1369180:three_prime_UTR
GGTAGAGAGTTGCAGGCTCT+TGG 0.490159 tig0018755:+127331 Msa1369180:CDS
AGAAGAAGCAATAGCAGAGA+TGG 0.490588 tig0018755:+128718 Msa1369180:CDS
AAACGTATGAATATAATGTA+AGG 0.503930 tig0018755:-129053 None:intergenic
CTCTTTCAGAACGAGTTACT+GGG 0.504101 tig0018755:-127252 None:intergenic
GGTGTTGAGTTGTTGGAGAA+AGG 0.504251 tig0018755:+127310 Msa1369180:CDS
ATATCACTAAAGGGGTATCC+AGG 0.504295 tig0018755:+128752 Msa1369180:CDS
TAGAGAGGGGAATAGAGAAA+AGG 0.525991 tig0018755:-127165 None:intergenic
CCTTCACCAAAAGCAGGAAA+AGG 0.532056 tig0018755:-127202 None:intergenic
TATGAAAGATCTGTAAAATG+AGG 0.541188 tig0018755:-128958 None:intergenic
TGCAGAGAACTAATCAAACT+TGG 0.543993 tig0018755:-129006 None:intergenic
TTGCATACTCAGAGAATGCT+AGG 0.548823 tig0018755:-128655 None:intergenic
TAGCATTCTCTGAGTATGCA+AGG 0.556080 tig0018755:+128657 Msa1369180:CDS
GAATGAAAAGGAAACTAGAG+AGG 0.556515 tig0018755:-127180 None:intergenic
GCATTGAATATTTGATAAGG+AGG 0.568760 tig0018755:+126964 None:intergenic
TTCTCTGAGTATGCAAGGGT+AGG 0.568807 tig0018755:+128662 Msa1369180:CDS
TGGTGTCTTTGATGTTGCAT+GGG 0.576401 tig0018755:+129234 Msa1369180:three_prime_UTR
TCTCTGAGTATGCAAGGGTA+GGG 0.583375 tig0018755:+128663 Msa1369180:CDS
AGTGAAGTGAAAAGTATGGT+AGG 0.588255 tig0018755:+127007 Msa1369180:exon
AATGAAAAGGAAACTAGAGA+GGG 0.589992 tig0018755:-127179 None:intergenic
CTGTCACCTTCACCAAAAGC+AGG 0.597423 tig0018755:-127208 None:intergenic
AGAGAACTAATCAAACTTGG+AGG 0.614896 tig0018755:-129003 None:intergenic
ATCTCACAAAGAGTTTCTCG+TGG 0.622042 tig0018755:+127289 Msa1369180:CDS
ATGTTAGAGACACAAAGCAC+TGG 0.634191 tig0018755:+128980 Msa1369180:CDS
ATGAAAAGGAAACTAGAGAG+GGG 0.635116 tig0018755:-127178 None:intergenic
AGCATTCTCTGAGTATGCAA+GGG 0.637209 tig0018755:+128658 Msa1369180:CDS
ACGTTTCAATATCACTAAAG+GGG 0.663806 tig0018755:+128744 Msa1369180:CDS
ATGCAACATCAAAGACACCA+TGG 0.671226 tig0018755:-129231 None:intergenic
AATGGAAGATTGGAAATGGG+TGG 0.722480 tig0018755:-127052 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGTAAAAAAGAAAAAA+CGG - tig0018755:129154-129173 None:intergenic 10.0%
!! ATAATGTAAAAAAGAAAAAA+CGG - tig0018755:129154-129173 None:intergenic 10.0%
!!! ATCTAAAATCTAAATTGATA+TGG - tig0018755:127691-127710 None:intergenic 15.0%
!! TAATGTAAAAAAGAAAAAAC+GGG - tig0018755:129153-129172 None:intergenic 15.0%
!!! ATCTAAAATCTAAATTGATA+TGG - tig0018755:127691-127710 None:intergenic 15.0%
!! TAATGTAAAAAAGAAAAAAC+GGG - tig0018755:129153-129172 None:intergenic 15.0%
!!! GCAAATATTCATTTACTTTT+GGG - tig0018755:128006-128025 None:intergenic 20.0%
!!! AGCAAATATTCATTTACTTT+TGG - tig0018755:128007-128026 None:intergenic 20.0%
!!! TGTAAGAGTGTATTATTTTT+TGG + tig0018755:128334-128353 Msa1369180:intron 20.0%
!! TATGAACATAAACTTATTGA+TGG - tig0018755:128589-128608 None:intergenic 20.0%
!! AAACGTATGAATATAATGTA+AGG - tig0018755:129056-129075 None:intergenic 20.0%
!!! TACATTTGAAGTTGTAATAA+AGG - tig0018755:129128-129147 None:intergenic 20.0%
!!! TGTATTTTTTTTTTCTTCCA+TGG + tig0018755:129214-129233 Msa1369180:three_prime_UTR 20.0%
!!! GCAAATATTCATTTACTTTT+GGG - tig0018755:128006-128025 None:intergenic 20.0%
!!! AGCAAATATTCATTTACTTT+TGG - tig0018755:128007-128026 None:intergenic 20.0%
!!! TGTAAGAGTGTATTATTTTT+TGG + tig0018755:128334-128353 Msa1369180:intron 20.0%
!! TATGAACATAAACTTATTGA+TGG - tig0018755:128589-128608 None:intergenic 20.0%
!! AAACGTATGAATATAATGTA+AGG - tig0018755:129056-129075 None:intergenic 20.0%
!!! TACATTTGAAGTTGTAATAA+AGG - tig0018755:129128-129147 None:intergenic 20.0%
!!! TGTATTTTTTTTTTCTTCCA+TGG + tig0018755:129214-129233 Msa1369180:three_prime_UTR 20.0%
! AAAAGAATTCTGAATTCTGA+TGG - tig0018755:127092-127111 None:intergenic 25.0%
! TTGCTTGTTTATCTTCAATT+TGG + tig0018755:127415-127434 Msa1369180:intron 25.0%
! GTTTATCTTCAATTTGGTAA+TGG + tig0018755:127421-127440 Msa1369180:intron 25.0%
!!! TCAATTTGGTAATGGATTAT+TGG + tig0018755:127429-127448 Msa1369180:intron 25.0%
! ACAAGACATGATATATGAAT+TGG + tig0018755:127503-127522 Msa1369180:intron 25.0%
! ATATAGATGACATAAACACA+TGG + tig0018755:127539-127558 Msa1369180:intron 25.0%
! TATAGATGACATAAACACAT+GGG + tig0018755:127540-127559 Msa1369180:intron 25.0%
!! TTTAGATTTTAGATTGCCAT+TGG + tig0018755:127697-127716 Msa1369180:intron 25.0%
! TTTACTGAGCAATCAATTAA+GGG + tig0018755:127730-127749 Msa1369180:intron 25.0%
! TTCTATTAAAAATGGGTGTT+TGG - tig0018755:127980-127999 None:intergenic 25.0%
!! TATAATTAAACCGACTTTAG+AGG + tig0018755:128380-128399 Msa1369180:intron 25.0%
!! GAATAGGTTCATTTTGTATT+TGG + tig0018755:128518-128537 Msa1369180:intron 25.0%
! TATGAAAGATCTGTAAAATG+AGG - tig0018755:128961-128980 None:intergenic 25.0%
! AGTTATATGAAAACTTTCTC+AGG + tig0018755:129096-129115 Msa1369180:three_prime_UTR 25.0%
! AAAAGAATTCTGAATTCTGA+TGG - tig0018755:127092-127111 None:intergenic 25.0%
! TTGCTTGTTTATCTTCAATT+TGG + tig0018755:127415-127434 Msa1369180:intron 25.0%
! GTTTATCTTCAATTTGGTAA+TGG + tig0018755:127421-127440 Msa1369180:intron 25.0%
!!! TCAATTTGGTAATGGATTAT+TGG + tig0018755:127429-127448 Msa1369180:intron 25.0%
! ACAAGACATGATATATGAAT+TGG + tig0018755:127503-127522 Msa1369180:intron 25.0%
! ATATAGATGACATAAACACA+TGG + tig0018755:127539-127558 Msa1369180:intron 25.0%
! TATAGATGACATAAACACAT+GGG + tig0018755:127540-127559 Msa1369180:intron 25.0%
!! TTTAGATTTTAGATTGCCAT+TGG + tig0018755:127697-127716 Msa1369180:intron 25.0%
! TTTACTGAGCAATCAATTAA+GGG + tig0018755:127730-127749 Msa1369180:intron 25.0%
! TTCTATTAAAAATGGGTGTT+TGG - tig0018755:127980-127999 None:intergenic 25.0%
!! TATAATTAAACCGACTTTAG+AGG + tig0018755:128380-128399 Msa1369180:intron 25.0%
!! GAATAGGTTCATTTTGTATT+TGG + tig0018755:128518-128537 Msa1369180:intron 25.0%
! TATGAAAGATCTGTAAAATG+AGG - tig0018755:128961-128980 None:intergenic 25.0%
! AGTTATATGAAAACTTTCTC+AGG + tig0018755:129096-129115 Msa1369180:three_prime_UTR 25.0%
!!! ATGGTTTTATGATTTCGCAA+TGG - tig0018755:127073-127092 None:intergenic 30.0%
AATGAAAAGGAAACTAGAGA+GGG - tig0018755:127182-127201 None:intergenic 30.0%
ATATCATGTCTTGTCACAAA+AGG - tig0018755:127497-127516 None:intergenic 30.0%
GAAAACAACTTGTAGCTTAT+AGG + tig0018755:127582-127601 Msa1369180:intron 30.0%
TACTACATCTCAATCTTAGA+TGG - tig0018755:127661-127680 None:intergenic 30.0%
CTTAATTGATTGCTCAGTAA+AGG - tig0018755:127731-127750 None:intergenic 30.0%
CTTTACTGAGCAATCAATTA+AGG + tig0018755:127729-127748 Msa1369180:intron 30.0%
TTTCTATAATCCGAGAGATA+AGG + tig0018755:127793-127812 Msa1369180:intron 30.0%
TTCTATAATCCGAGAGATAA+GGG + tig0018755:127794-127813 Msa1369180:intron 30.0%
TGGGCGATTCTATTAAAAAT+GGG - tig0018755:127987-128006 None:intergenic 30.0%
TTGGGCGATTCTATTAAAAA+TGG - tig0018755:127988-128007 None:intergenic 30.0%
ACTAGCAGTAAAACTTAACT+AGG - tig0018755:128032-128051 None:intergenic 30.0%
TCAAGCATTAATTTAGCAGT+AGG - tig0018755:128063-128082 None:intergenic 30.0%
TACAGAGTTGAAGAATAAGA+GGG - tig0018755:128095-128114 None:intergenic 30.0%
ATACAGAGTTGAAGAATAAG+AGG - tig0018755:128096-128115 None:intergenic 30.0%
CGCTAACGATATATAAATAC+TGG - tig0018755:128166-128185 None:intergenic 30.0%
CTTGTTCATACATTACTTCT+CGG + tig0018755:128476-128495 Msa1369180:intron 30.0%
TTGTTCATACATTACTTCTC+GGG + tig0018755:128477-128496 Msa1369180:intron 30.0%
! TAGGTTCATTTTGTATTTGG+TGG + tig0018755:128521-128540 Msa1369180:intron 30.0%
TTTCAATCACCTACAAAAAC+AGG - tig0018755:128625-128644 None:intergenic 30.0%
TCTGTCACCAATTTCATATA+GGG - tig0018755:128699-128718 None:intergenic 30.0%
AGACGTTTCAATATCACTAA+AGG + tig0018755:128742-128761 Msa1369180:CDS 30.0%
GACGTTTCAATATCACTAAA+GGG + tig0018755:128743-128762 Msa1369180:CDS 30.0%
ACGTTTCAATATCACTAAAG+GGG + tig0018755:128744-128763 Msa1369180:CDS 30.0%
TATGAAAACTTTCTCAGGTT+TGG + tig0018755:129101-129120 Msa1369180:three_prime_UTR 30.0%
! ATTTTCTACTTCAACTCTTG+TGG + tig0018755:129172-129191 Msa1369180:three_prime_UTR 30.0%
!!! ATGGTTTTATGATTTCGCAA+TGG - tig0018755:127073-127092 None:intergenic 30.0%
AATGAAAAGGAAACTAGAGA+GGG - tig0018755:127182-127201 None:intergenic 30.0%
ATATCATGTCTTGTCACAAA+AGG - tig0018755:127497-127516 None:intergenic 30.0%
GAAAACAACTTGTAGCTTAT+AGG + tig0018755:127582-127601 Msa1369180:intron 30.0%
TACTACATCTCAATCTTAGA+TGG - tig0018755:127661-127680 None:intergenic 30.0%
CTTAATTGATTGCTCAGTAA+AGG - tig0018755:127731-127750 None:intergenic 30.0%
CTTTACTGAGCAATCAATTA+AGG + tig0018755:127729-127748 Msa1369180:intron 30.0%
TTTCTATAATCCGAGAGATA+AGG + tig0018755:127793-127812 Msa1369180:intron 30.0%
TTCTATAATCCGAGAGATAA+GGG + tig0018755:127794-127813 Msa1369180:intron 30.0%
TGGGCGATTCTATTAAAAAT+GGG - tig0018755:127987-128006 None:intergenic 30.0%
TTGGGCGATTCTATTAAAAA+TGG - tig0018755:127988-128007 None:intergenic 30.0%
ACTAGCAGTAAAACTTAACT+AGG - tig0018755:128032-128051 None:intergenic 30.0%
TCAAGCATTAATTTAGCAGT+AGG - tig0018755:128063-128082 None:intergenic 30.0%
TACAGAGTTGAAGAATAAGA+GGG - tig0018755:128095-128114 None:intergenic 30.0%
ATACAGAGTTGAAGAATAAG+AGG - tig0018755:128096-128115 None:intergenic 30.0%
CGCTAACGATATATAAATAC+TGG - tig0018755:128166-128185 None:intergenic 30.0%
CTTGTTCATACATTACTTCT+CGG + tig0018755:128476-128495 Msa1369180:intron 30.0%
TTGTTCATACATTACTTCTC+GGG + tig0018755:128477-128496 Msa1369180:intron 30.0%
! TAGGTTCATTTTGTATTTGG+TGG + tig0018755:128521-128540 Msa1369180:intron 30.0%
TTTCAATCACCTACAAAAAC+AGG - tig0018755:128625-128644 None:intergenic 30.0%
TCTGTCACCAATTTCATATA+GGG - tig0018755:128699-128718 None:intergenic 30.0%
AGACGTTTCAATATCACTAA+AGG + tig0018755:128742-128761 Msa1369180:CDS 30.0%
GACGTTTCAATATCACTAAA+GGG + tig0018755:128743-128762 Msa1369180:CDS 30.0%
ACGTTTCAATATCACTAAAG+GGG + tig0018755:128744-128763 Msa1369180:CDS 30.0%
TATGAAAACTTTCTCAGGTT+TGG + tig0018755:129101-129120 Msa1369180:three_prime_UTR 30.0%
! ATTTTCTACTTCAACTCTTG+TGG + tig0018755:129172-129191 Msa1369180:three_prime_UTR 30.0%
GAGGTAGAAAGCAAAATATC+AGG + tig0018755:126983-127002 Msa1369180:five_prime_UTR 35.0%
AGGAAGTGAAGTGAAAAGTA+TGG + tig0018755:127003-127022 Msa1369180:exon 35.0%
! AGTGAAGTGAAAAGTATGGT+AGG + tig0018755:127007-127026 Msa1369180:exon 35.0%
ATGATTTCGCAATGGAAGAT+TGG - tig0018755:127065-127084 None:intergenic 35.0%
ATGAAAAGGAAACTAGAGAG+GGG - tig0018755:127181-127200 None:intergenic 35.0%
GAATGAAAAGGAAACTAGAG+AGG - tig0018755:127183-127202 None:intergenic 35.0%
AAGCAGGAAAAGGAATGAAA+AGG - tig0018755:127195-127214 None:intergenic 35.0%
! TTCATTCCTTTTCCTGCTTT+TGG + tig0018755:127196-127215 Msa1369180:CDS 35.0%
TTACCCAATATCCTTTCGTT+AGG + tig0018755:127389-127408 Msa1369180:intron 35.0%
GAACCTAACGAAAGGATATT+GGG - tig0018755:127395-127414 None:intergenic 35.0%
AGAACCTAACGAAAGGATAT+TGG - tig0018755:127396-127415 None:intergenic 35.0%
AATTGATTGCTCAGTAAAGG+TGG - tig0018755:127728-127747 None:intergenic 35.0%
GCAATCAATTAAGGGAAGTT+TGG + tig0018755:127738-127757 Msa1369180:intron 35.0%
CTGCAATCATAGGCTATTTA+AGG - tig0018755:127824-127843 None:intergenic 35.0%
CTTAAATAGCCTATGATTGC+AGG + tig0018755:127822-127841 Msa1369180:intron 35.0%
AAACACTCACACAAGTGTTT+GGG + tig0018755:127925-127944 Msa1369180:intron 35.0%
ATTCTTCAACTCTGTATCTG+AGG + tig0018755:128099-128118 Msa1369180:intron 35.0%
TCAAAGTTCATGCCAAGAAT+TGG + tig0018755:128263-128282 Msa1369180:intron 35.0%
CAAAGTTCATGCCAAGAATT+GGG + tig0018755:128264-128283 Msa1369180:intron 35.0%
TCTAGTAAAGTCCCAATTCT+TGG - tig0018755:128278-128297 None:intergenic 35.0%
TGAGAACTTTCCAAATCACA+AGG - tig0018755:128406-128425 None:intergenic 35.0%
CGAGAAGTAATGTATGAACA+AGG - tig0018755:128478-128497 None:intergenic 35.0%
GTTATGCCATGAAATAGATG+AGG - tig0018755:128552-128571 None:intergenic 35.0%
!!! AACATGCTACCTGTTTTTGT+AGG + tig0018755:128613-128632 Msa1369180:intron 35.0%
CTCTGTCACCAATTTCATAT+AGG - tig0018755:128700-128719 None:intergenic 35.0%
GCTATGAAATTGAACTTACC+TGG - tig0018755:128773-128792 None:intergenic 35.0%
AGCATGCTTATCTGCATATA+AGG - tig0018755:128893-128912 None:intergenic 35.0%
GAAGAGTTGCAATTGTAAAC+TGG - tig0018755:128933-128952 None:intergenic 35.0%
AGAGAACTAATCAAACTTGG+AGG - tig0018755:129006-129025 None:intergenic 35.0%
TGCAGAGAACTAATCAAACT+TGG - tig0018755:129009-129028 None:intergenic 35.0%
TTGTTCTATTACCTGCCTAT+TGG + tig0018755:129311-129330 Msa1369180:three_prime_UTR 35.0%
TGTTCTATTACCTGCCTATT+GGG + tig0018755:129312-129331 Msa1369180:three_prime_UTR 35.0%
GAGGTAGAAAGCAAAATATC+AGG + tig0018755:126983-127002 Msa1369180:five_prime_UTR 35.0%
AGGAAGTGAAGTGAAAAGTA+TGG + tig0018755:127003-127022 Msa1369180:exon 35.0%
! AGTGAAGTGAAAAGTATGGT+AGG + tig0018755:127007-127026 Msa1369180:exon 35.0%
ATGATTTCGCAATGGAAGAT+TGG - tig0018755:127065-127084 None:intergenic 35.0%
ATGAAAAGGAAACTAGAGAG+GGG - tig0018755:127181-127200 None:intergenic 35.0%
GAATGAAAAGGAAACTAGAG+AGG - tig0018755:127183-127202 None:intergenic 35.0%
AAGCAGGAAAAGGAATGAAA+AGG - tig0018755:127195-127214 None:intergenic 35.0%
! TTCATTCCTTTTCCTGCTTT+TGG + tig0018755:127196-127215 Msa1369180:CDS 35.0%
TTACCCAATATCCTTTCGTT+AGG + tig0018755:127389-127408 Msa1369180:intron 35.0%
GAACCTAACGAAAGGATATT+GGG - tig0018755:127395-127414 None:intergenic 35.0%
AGAACCTAACGAAAGGATAT+TGG - tig0018755:127396-127415 None:intergenic 35.0%
AATTGATTGCTCAGTAAAGG+TGG - tig0018755:127728-127747 None:intergenic 35.0%
GCAATCAATTAAGGGAAGTT+TGG + tig0018755:127738-127757 Msa1369180:intron 35.0%
CTGCAATCATAGGCTATTTA+AGG - tig0018755:127824-127843 None:intergenic 35.0%
CTTAAATAGCCTATGATTGC+AGG + tig0018755:127822-127841 Msa1369180:intron 35.0%
AAACACTCACACAAGTGTTT+GGG + tig0018755:127925-127944 Msa1369180:intron 35.0%
ATTCTTCAACTCTGTATCTG+AGG + tig0018755:128099-128118 Msa1369180:intron 35.0%
TCAAAGTTCATGCCAAGAAT+TGG + tig0018755:128263-128282 Msa1369180:intron 35.0%
CAAAGTTCATGCCAAGAATT+GGG + tig0018755:128264-128283 Msa1369180:intron 35.0%
TCTAGTAAAGTCCCAATTCT+TGG - tig0018755:128278-128297 None:intergenic 35.0%
TGAGAACTTTCCAAATCACA+AGG - tig0018755:128406-128425 None:intergenic 35.0%
CGAGAAGTAATGTATGAACA+AGG - tig0018755:128478-128497 None:intergenic 35.0%
GTTATGCCATGAAATAGATG+AGG - tig0018755:128552-128571 None:intergenic 35.0%
!!! AACATGCTACCTGTTTTTGT+AGG + tig0018755:128613-128632 Msa1369180:intron 35.0%
CTCTGTCACCAATTTCATAT+AGG - tig0018755:128700-128719 None:intergenic 35.0%
GCTATGAAATTGAACTTACC+TGG - tig0018755:128773-128792 None:intergenic 35.0%
AGCATGCTTATCTGCATATA+AGG - tig0018755:128893-128912 None:intergenic 35.0%
GAAGAGTTGCAATTGTAAAC+TGG - tig0018755:128933-128952 None:intergenic 35.0%
AGAGAACTAATCAAACTTGG+AGG - tig0018755:129006-129025 None:intergenic 35.0%
TGCAGAGAACTAATCAAACT+TGG - tig0018755:129009-129028 None:intergenic 35.0%
TTGTTCTATTACCTGCCTAT+TGG + tig0018755:129311-129330 Msa1369180:three_prime_UTR 35.0%
AATGGAAGATTGGAAATGGG+TGG - tig0018755:127055-127074 None:intergenic 40.0%
CGCAATGGAAGATTGGAAAT+GGG - tig0018755:127058-127077 None:intergenic 40.0%
TCGCAATGGAAGATTGGAAA+TGG - tig0018755:127059-127078 None:intergenic 40.0%
TAGAGAGGGGAATAGAGAAA+AGG - tig0018755:127168-127187 None:intergenic 40.0%
CTCTTTCAGAACGAGTTACT+GGG - tig0018755:127255-127274 None:intergenic 40.0%
TCTCTTTCAGAACGAGTTAC+TGG - tig0018755:127256-127275 None:intergenic 40.0%
ATCTCACAAAGAGTTTCTCG+TGG + tig0018755:127289-127308 Msa1369180:CDS 40.0%
! CGCTCTTCAATACTTTTCTC+AGG + tig0018755:127366-127385 Msa1369180:CDS 40.0%
ACAAGCAAGAACCTAACGAA+AGG - tig0018755:127403-127422 None:intergenic 40.0%
AGTAAAGGTGGAAAAGCCAA+TGG - tig0018755:127716-127735 None:intergenic 40.0%
TAAGGCTTACCCTTATCTCT+CGG - tig0018755:127806-127825 None:intergenic 40.0%
CAAACACTTGTGTGAGTGTT+TGG - tig0018755:127926-127945 None:intergenic 40.0%
CAAACACTCACACAAGTGTT+TGG + tig0018755:127924-127943 Msa1369180:intron 40.0%
!! AATCACAAGGCCTCTAAAGT+CGG - tig0018755:128393-128412 None:intergenic 40.0%
! ACTTTAGAGGCCTTGTGATT+TGG + tig0018755:128393-128412 Msa1369180:intron 40.0%
! GTGATTTGGAAAGTTCTCAG+AGG + tig0018755:128407-128426 Msa1369180:intron 40.0%
TTTAGCCACATGAAGTTGCA+AGG - tig0018755:128449-128468 None:intergenic 40.0%
TTGCATACTCAGAGAATGCT+AGG - tig0018755:128658-128677 None:intergenic 40.0%
TAGCATTCTCTGAGTATGCA+AGG + tig0018755:128657-128676 Msa1369180:CDS 40.0%
AGCATTCTCTGAGTATGCAA+GGG + tig0018755:128658-128677 Msa1369180:CDS 40.0%
GCACTAGCCCTATATGAAAT+TGG + tig0018755:128689-128708 Msa1369180:CDS 40.0%
AGAAGAAGCAATAGCAGAGA+TGG + tig0018755:128718-128737 Msa1369180:CDS 40.0%
!! ATATCACTAAAGGGGTATCC+AGG + tig0018755:128752-128771 Msa1369180:CDS 40.0%
ATGTTAGAGACACAAAGCAC+TGG + tig0018755:128980-128999 Msa1369180:CDS 40.0%
ATGCAACATCAAAGACACCA+TGG - tig0018755:129234-129253 None:intergenic 40.0%
ATGGTGTCTTTGATGTTGCA+TGG + tig0018755:129233-129252 Msa1369180:three_prime_UTR 40.0%
TGGTGTCTTTGATGTTGCAT+GGG + tig0018755:129234-129253 Msa1369180:three_prime_UTR 40.0%
AATGGAAGATTGGAAATGGG+TGG - tig0018755:127055-127074 None:intergenic 40.0%
CGCAATGGAAGATTGGAAAT+GGG - tig0018755:127058-127077 None:intergenic 40.0%
TCGCAATGGAAGATTGGAAA+TGG - tig0018755:127059-127078 None:intergenic 40.0%
TAGAGAGGGGAATAGAGAAA+AGG - tig0018755:127168-127187 None:intergenic 40.0%
CTCTTTCAGAACGAGTTACT+GGG - tig0018755:127255-127274 None:intergenic 40.0%
TCTCTTTCAGAACGAGTTAC+TGG - tig0018755:127256-127275 None:intergenic 40.0%
ATCTCACAAAGAGTTTCTCG+TGG + tig0018755:127289-127308 Msa1369180:CDS 40.0%
! CGCTCTTCAATACTTTTCTC+AGG + tig0018755:127366-127385 Msa1369180:CDS 40.0%
ACAAGCAAGAACCTAACGAA+AGG - tig0018755:127403-127422 None:intergenic 40.0%
AGTAAAGGTGGAAAAGCCAA+TGG - tig0018755:127716-127735 None:intergenic 40.0%
TAAGGCTTACCCTTATCTCT+CGG - tig0018755:127806-127825 None:intergenic 40.0%
CAAACACTTGTGTGAGTGTT+TGG - tig0018755:127926-127945 None:intergenic 40.0%
CAAACACTCACACAAGTGTT+TGG + tig0018755:127924-127943 Msa1369180:intron 40.0%
!! AATCACAAGGCCTCTAAAGT+CGG - tig0018755:128393-128412 None:intergenic 40.0%
! ACTTTAGAGGCCTTGTGATT+TGG + tig0018755:128393-128412 Msa1369180:intron 40.0%
! GTGATTTGGAAAGTTCTCAG+AGG + tig0018755:128407-128426 Msa1369180:intron 40.0%
TTTAGCCACATGAAGTTGCA+AGG - tig0018755:128449-128468 None:intergenic 40.0%
TTGCATACTCAGAGAATGCT+AGG - tig0018755:128658-128677 None:intergenic 40.0%
TAGCATTCTCTGAGTATGCA+AGG + tig0018755:128657-128676 Msa1369180:CDS 40.0%
AGCATTCTCTGAGTATGCAA+GGG + tig0018755:128658-128677 Msa1369180:CDS 40.0%
GCACTAGCCCTATATGAAAT+TGG + tig0018755:128689-128708 Msa1369180:CDS 40.0%
AGAAGAAGCAATAGCAGAGA+TGG + tig0018755:128718-128737 Msa1369180:CDS 40.0%
!! ATATCACTAAAGGGGTATCC+AGG + tig0018755:128752-128771 Msa1369180:CDS 40.0%
ATGTTAGAGACACAAAGCAC+TGG + tig0018755:128980-128999 Msa1369180:CDS 40.0%
ATGCAACATCAAAGACACCA+TGG - tig0018755:129234-129253 None:intergenic 40.0%
ATGGTGTCTTTGATGTTGCA+TGG + tig0018755:129233-129252 Msa1369180:three_prime_UTR 40.0%
TGGTGTCTTTGATGTTGCAT+GGG + tig0018755:129234-129253 Msa1369180:three_prime_UTR 40.0%
CCTTCACCAAAAGCAGGAAA+AGG - tig0018755:127205-127224 None:intergenic 45.0%
!! CCTTTTCCTGCTTTTGGTGA+AGG + tig0018755:127202-127221 Msa1369180:CDS 45.0%
! TTCTCGTGGTGTTGAGTTGT+TGG + tig0018755:127303-127322 Msa1369180:CDS 45.0%
! GGTGTTGAGTTGTTGGAGAA+AGG + tig0018755:127310-127329 Msa1369180:CDS 45.0%
TTTCATGTAAGCTCCCCCAA+TGG - tig0018755:127848-127867 None:intergenic 45.0%
AAAGATGTCGCACACTCTGT+TGG + tig0018755:128123-128142 Msa1369180:intron 45.0%
ATCCACCTTGCAACTTCATG+TGG + tig0018755:128441-128460 Msa1369180:intron 45.0%
CGAAATGAGTGACGTCGAAT+AGG + tig0018755:128502-128521 Msa1369180:intron 45.0%
GCTCGACCTCATCTATTTCA+TGG + tig0018755:128543-128562 Msa1369180:intron 45.0%
TTCTCTGAGTATGCAAGGGT+AGG + tig0018755:128662-128681 Msa1369180:CDS 45.0%
TCTCTGAGTATGCAAGGGTA+GGG + tig0018755:128663-128682 Msa1369180:CDS 45.0%
CCTTCACCAAAAGCAGGAAA+AGG - tig0018755:127205-127224 None:intergenic 45.0%
!! CCTTTTCCTGCTTTTGGTGA+AGG + tig0018755:127202-127221 Msa1369180:CDS 45.0%
! TTCTCGTGGTGTTGAGTTGT+TGG + tig0018755:127303-127322 Msa1369180:CDS 45.0%
! GGTGTTGAGTTGTTGGAGAA+AGG + tig0018755:127310-127329 Msa1369180:CDS 45.0%
TTTCATGTAAGCTCCCCCAA+TGG - tig0018755:127848-127867 None:intergenic 45.0%
AAAGATGTCGCACACTCTGT+TGG + tig0018755:128123-128142 Msa1369180:intron 45.0%
ATCCACCTTGCAACTTCATG+TGG + tig0018755:128441-128460 Msa1369180:intron 45.0%
CGAAATGAGTGACGTCGAAT+AGG + tig0018755:128502-128521 Msa1369180:intron 45.0%
GCTCGACCTCATCTATTTCA+TGG + tig0018755:128543-128562 Msa1369180:intron 45.0%
TTCTCTGAGTATGCAAGGGT+AGG + tig0018755:128662-128681 Msa1369180:CDS 45.0%
TCTCTGAGTATGCAAGGGTA+GGG + tig0018755:128663-128682 Msa1369180:CDS 45.0%
CTGTCACCTTCACCAAAAGC+AGG - tig0018755:127211-127230 None:intergenic 50.0%
GGAGAAAGGTAGAGAGTTGC+AGG + tig0018755:127324-127343 Msa1369180:CDS 50.0%
! CAGGCTCTTGGTGACTTCAA+TGG + tig0018755:127343-127362 Msa1369180:CDS 50.0%
AGCCTATGATTGCAGGCCAT+TGG + tig0018755:127829-127848 Msa1369180:intron 50.0%
GCCTATGATTGCAGGCCATT+GGG + tig0018755:127830-127849 Msa1369180:intron 50.0%
CCTATGATTGCAGGCCATTG+GGG + tig0018755:127831-127850 Msa1369180:intron 50.0%
CTATGATTGCAGGCCATTGG+GGG + tig0018755:127832-127851 Msa1369180:intron 50.0%
GAAGTTGCAAGGTGGATGAG+TGG - tig0018755:128438-128457 None:intergenic 50.0%
AGCCACATGAAGTTGCAAGG+TGG - tig0018755:128446-128465 None:intergenic 50.0%
CTGTCACCTTCACCAAAAGC+AGG - tig0018755:127211-127230 None:intergenic 50.0%
GGAGAAAGGTAGAGAGTTGC+AGG + tig0018755:127324-127343 Msa1369180:CDS 50.0%
! CAGGCTCTTGGTGACTTCAA+TGG + tig0018755:127343-127362 Msa1369180:CDS 50.0%
AGCCTATGATTGCAGGCCAT+TGG + tig0018755:127829-127848 Msa1369180:intron 50.0%
GCCTATGATTGCAGGCCATT+GGG + tig0018755:127830-127849 Msa1369180:intron 50.0%
CCTATGATTGCAGGCCATTG+GGG + tig0018755:127831-127850 Msa1369180:intron 50.0%
CTATGATTGCAGGCCATTGG+GGG + tig0018755:127832-127851 Msa1369180:intron 50.0%
GAAGTTGCAAGGTGGATGAG+TGG - tig0018755:128438-128457 None:intergenic 50.0%
AGCCACATGAAGTTGCAAGG+TGG - tig0018755:128446-128465 None:intergenic 50.0%
GGTAGAGAGTTGCAGGCTCT+TGG + tig0018755:127331-127350 Msa1369180:CDS 55.0%
CCCCAATGGCCTGCAATCAT+AGG - tig0018755:127834-127853 None:intergenic 55.0%
GCGAAAGAGCTGTCGCACAA+TGG + tig0018755:128185-128204 Msa1369180:intron 55.0%
GGTAGAGAGTTGCAGGCTCT+TGG + tig0018755:127331-127350 Msa1369180:CDS 55.0%
CCCCAATGGCCTGCAATCAT+AGG - tig0018755:127834-127853 None:intergenic 55.0%
GCGAAAGAGCTGTCGCACAA+TGG + tig0018755:128185-128204 Msa1369180:intron 55.0%
Chromosome Type Strat End Strand Name
tig0018755 gene 126975 129334 126975 ID=Msa1369180;Name=Msa1369180
tig0018755 mRNA 126975 129334 126975 ID=Msa1369180-mRNA-1;Parent=Msa1369180;Name=Msa1369180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=47|1|1|1|1|1|3|284|229
tig0018755 exon 126975 127387 126975 ID=Msa1369180-mRNA-1:exon:989;Parent=Msa1369180-mRNA-1
tig0018755 exon 128635 128773 128635 ID=Msa1369180-mRNA-1:exon:990;Parent=Msa1369180-mRNA-1
tig0018755 exon 128866 129334 128866 ID=Msa1369180-mRNA-1:exon:991;Parent=Msa1369180-mRNA-1
tig0018755 five_prime_UTR 126975 127021 126975 ID=Msa1369180-mRNA-1:five_prime_utr;Parent=Msa1369180-mRNA-1
tig0018755 CDS 127022 127387 127022 ID=Msa1369180-mRNA-1:cds;Parent=Msa1369180-mRNA-1
tig0018755 CDS 128635 128773 128635 ID=Msa1369180-mRNA-1:cds;Parent=Msa1369180-mRNA-1
tig0018755 CDS 128866 129050 128866 ID=Msa1369180-mRNA-1:cds;Parent=Msa1369180-mRNA-1
tig0018755 three_prime_UTR 129051 129334 129051 ID=Msa1369180-mRNA-1:three_prime_utr;Parent=Msa1369180-mRNA-1
Gene Sequence

>Msa1369180

ATGGTAGGTGCATGCAGAGCAGTAGCAGCACCACCCATTTCCAATCTTCCATTGCGAAATCATAAAACCATCAGAATTCAGAATTCTTTTCATCAGAACAAAAGCAAAGCTTTCAGAGCTCAACTTTCAAATAGACGCTTGTTCCTTTTCTCTATTCCCCTCTCTAGTTTCCTTTTCATTCCTTTTCCTGCTTTTGGTGAAGGTGACAGTGTCATTTCACAAGAGTATGACCCAGTAACTCGTTCTGAAAGAGATGCAAGTGCTTTAATCTCACAAAGAGTTTCTCGTGGTGTTGAGTTGTTGGAGAAAGGTAGAGAGTTGCAGGCTCTTGGTGACTTCAATGGCGCTCTTCAATACTTTTCTCAGGTGATTGAAAGCTACAAAGACCTAGCATTCTCTGAGTATGCAAGGGTAGGGAGAGCACTAGCCCTATATGAAATTGGTGACAGAGAAGAAGCAATAGCAGAGATGGAAGACGTTTCAATATCACTAAAGGGGTATCCAGAAGTACATGCAGCTCTTGCAGCAGCCTTATATGCAGATAAGCATGCTGCGTTGCTTGCTGAAAACCAGTTTACAATTGCAACTCTTCTTGATCCTCATTTTACAGATCTTTCATATGTTAGAGACACAAAGCACTGGCCTCCAAGTTTGATTAGTTCTCTGCAGCATTTCATTACACTATCTTAA

Protein sequence

>Msa1369180

MVGACRAVAAPPISNLPLRNHKTIRIQNSFHQNKSKAFRAQLSNRRLFLFSIPLSSFLFIPFPAFGEGDSVISQEYDPVTRSERDASALISQRVSRGVELLEKGRELQALGDFNGALQYFSQVIESYKDLAFSEYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYADKHAALLAENQFTIATLLDPHFTDLSYVRDTKHWPPSLISSLQHFITLS*