Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715970 | XP_003611879.1 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715970 | sp|P49204|RS42_ARATH | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715970 | B7FL29 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0086160 | Msa0715970 | 0.844938 | 5.543378e-59 | -8.615850e-47 |
| Msa0114600 | Msa0715970 | 0.837866 | 4.035737e-57 | -8.615850e-47 |
| Msa0602900 | Msa0715970 | 0.812707 | 3.701715e-51 | -8.615850e-47 |
| Msa0643960 | Msa0715970 | 0.809973 | 1.451858e-50 | -8.615850e-47 |
| Msa0649580 | Msa0715970 | 0.823828 | 1.122260e-53 | -8.615850e-47 |
| Msa0663400 | Msa0715970 | 0.867210 | 1.618190e-65 | -8.615850e-47 |
| Msa0715970 | Msa0796490 | 0.816318 | 5.881834e-52 | -8.615850e-47 |
| Msa0715970 | Msa0798590 | 0.886782 | 2.533408e-72 | -8.615850e-47 |
| Msa0715970 | Msa1004780 | 0.802981 | 4.334963e-49 | -8.615850e-47 |
| Msa0715970 | Msa1085850 | 0.808996 | 2.353655e-50 | -8.615850e-47 |
| Msa0715970 | Msa1118790 | 0.810458 | 1.141233e-50 | -8.615850e-47 |
| Msa0715970 | Msa1255830 | 0.811489 | 6.824385e-51 | -8.615850e-47 |
| Msa0715970 | Msa1255850 | 0.811276 | 7.591407e-51 | -8.615850e-47 |
| Msa0715970 | Msa1341780 | 0.819264 | 1.272327e-52 | -8.615850e-47 |
| Msa0715970 | Msa1385480 | 0.816529 | 5.277599e-52 | -8.615850e-47 |
| Msa0419710 | Msa0715970 | 0.804466 | 2.131805e-49 | -8.615850e-47 |
| Msa0433060 | Msa0715970 | 0.819337 | 1.224495e-52 | -8.615850e-47 |
| Msa0450150 | Msa0715970 | 0.837417 | 5.263566e-57 | -8.615850e-47 |
| Msa0270160 | Msa0715970 | 0.817763 | 2.785836e-52 | -8.615850e-47 |
| Msa0277600 | Msa0715970 | 0.809749 | 1.622407e-50 | -8.615850e-47 |
| Msa0524680 | Msa0715970 | 0.820064 | 8.355861e-53 | -8.615850e-47 |
| Msa0547920 | Msa0715970 | 0.806160 | 9.415879e-50 | -8.615850e-47 |
| Msa0568380 | Msa0715970 | 0.856854 | 2.427612e-62 | -8.615850e-47 |
| Msa0585570 | Msa0715970 | 0.866107 | 3.630228e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715970 | MtrunA17_Chr5g0403311 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Msa0715970 | MtrunA17_Chr8g0357951 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Msa0715970 | MtrunA17_Chr4g0005611 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| Msa0715970 | MtrunA17_Chr7g0243211 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715970 | AT5G07090.1 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| Msa0715970 | AT2G17360.1 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| Msa0715970 | AT5G58420.1 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| Msa0715970 | AT5G07090.3 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| Msa0715970 | AT5G07090.2 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| Msa0715970 | AT2G17360.2 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.71e-125 | 354 |
Find 111 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAAGCTCTCATTTGTCTT+AGG | 0.156777 | 5_1:+9217029 | None:intergenic |
| TTCTTAGATACTGAATATTT+AGG | 0.208402 | 5_1:-9218705 | Msa0715970:five_prime_UTR |
| TGAACGTCTTCTATCAATTT+TGG | 0.211537 | 5_1:-9215968 | Msa0715970:three_prime_UTR |
| CACATAACCAGAGCTGAAAT+TGG | 0.251996 | 5_1:-9215793 | Msa0715970:three_prime_UTR |
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 5_1:-9217794 | Msa0715970:CDS |
| TTATCATTCAAGCTTAATAT+TGG | 0.302230 | 5_1:-9215879 | Msa0715970:three_prime_UTR |
| CTAAGAAGCGTATGTGGATA+TGG | 0.312910 | 5_1:+9218721 | None:intergenic |
| TCTTAGATACTGAATATTTA+GGG | 0.318461 | 5_1:-9218704 | Msa0715970:five_prime_UTR |
| TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 5_1:+9216387 | None:intergenic |
| TGTGGTCCAGATGAGGGTTT+AGG | 0.339811 | 5_1:+9217670 | None:intergenic |
| AGGTTCGTTCAGTGCAATTT+GGG | 0.356395 | 5_1:-9216461 | Msa0715970:CDS |
| AAGGTTCGTTCAGTGCAATT+TGG | 0.362570 | 5_1:-9216462 | Msa0715970:CDS |
| TGCGACCATCATAGGTGTTC+AGG | 0.372486 | 5_1:+9216421 | None:intergenic |
| TTCAAGCTTAATATTGGTAA+TGG | 0.377039 | 5_1:-9215873 | Msa0715970:three_prime_UTR |
| GAAAGCTCTCATTTGTCTTA+GGG | 0.377197 | 5_1:+9217030 | None:intergenic |
| GTTACCCAGACCCCGTCATC+AGG | 0.378657 | 5_1:-9216392 | Msa0715970:CDS |
| GGTGACTGGTGGTAAGAATA+GGG | 0.379702 | 5_1:-9216289 | Msa0715970:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 5_1:+9217799 | None:intergenic |
| AGGCTCTGAAGTTGGGCATT+AGG | 0.389710 | 5_1:+9215730 | None:intergenic |
| ATTTCATCAAATTTGATGTT+GGG | 0.389801 | 5_1:-9216323 | Msa0715970:CDS |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 5_1:-9217515 | Msa0715970:CDS |
| GACATCAAGGCTCTGAAGTT+GGG | 0.410054 | 5_1:+9215723 | None:intergenic |
| TGGTGACTGGTGGTAAGAAT+AGG | 0.412505 | 5_1:-9216290 | Msa0715970:CDS |
| CTCTGTAGCTGCTGCGAAGA+AGG | 0.424035 | 5_1:-9218631 | Msa0715970:five_prime_UTR |
| AATGAGTGGGAGACATTCCC+TGG | 0.424661 | 5_1:+9217642 | None:intergenic |
| CTGGTCAATGTGTTCACTAT+TGG | 0.427005 | 5_1:-9216171 | Msa0715970:CDS |
| CTTTGAGACAATCCACGTTC+AGG | 0.430746 | 5_1:-9216223 | Msa0715970:CDS |
| TAATTTAATACCCTTGCCCT+TGG | 0.435192 | 5_1:+9216119 | None:intergenic |
| TAAAATCCCAATTTCAGCTC+TGG | 0.436937 | 5_1:+9215786 | None:intergenic |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 5_1:+9217798 | None:intergenic |
| CAACGACATGTCCTTGTTGA+TGG | 0.438982 | 5_1:-9217556 | Msa0715970:CDS |
| ACGGATAGTGCGACCATCAT+AGG | 0.439814 | 5_1:+9216413 | None:intergenic |
| CCTCATCATCTCTGACTGAA+TGG | 0.453638 | 5_1:+9216973 | None:intergenic |
| TGACATCAAGGCTCTGAAGT+TGG | 0.454372 | 5_1:+9215722 | None:intergenic |
| GTGTCATTAGCCCTGATGAC+GGG | 0.456779 | 5_1:+9216381 | None:intergenic |
| TCATGAGTTTGCAACTCGTC+TGG | 0.461260 | 5_1:-9216190 | Msa0715970:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 5_1:-9217793 | Msa0715970:CDS |
| TGATGTTGGGAATGTAGTTA+TGG | 0.467410 | 5_1:-9216310 | Msa0715970:CDS |
| CAAGAACAGAGAAAAGCATA+AGG | 0.471422 | 5_1:-9216250 | Msa0715970:CDS |
| CCATCATAGGTGTTCAGGTA+TGG | 0.471971 | 5_1:+9216426 | None:intergenic |
| TAGGCTCCTAAACCCTCATC+TGG | 0.473255 | 5_1:-9217676 | Msa0715970:CDS |
| CATCTGGACCACACAAGTCC+AGG | 0.474068 | 5_1:-9217660 | Msa0715970:CDS |
| ATGGAGACGGAAACGGCCTT+TGG | 0.474465 | 5_1:+9216992 | None:intergenic |
| GCTCTGGTTATGTGATCAAC+TGG | 0.476135 | 5_1:+9215802 | None:intergenic |
| TAGCCCTGATGACGGGGTCT+GGG | 0.476922 | 5_1:+9216388 | None:intergenic |
| TCAGAATAGCAATGACTTCA+CGG | 0.477884 | 5_1:+9217581 | None:intergenic |
| TCCTTGTTGATGGCAAAGTC+AGG | 0.479245 | 5_1:-9217546 | Msa0715970:CDS |
| GATTTCATCAAATTTGATGT+TGG | 0.482045 | 5_1:-9216324 | Msa0715970:CDS |
| TATGTGATCAACTGGTATTA+TGG | 0.495590 | 5_1:+9215810 | None:intergenic |
| ACATAACCAGAGCTGAAATT+GGG | 0.506961 | 5_1:-9215792 | Msa0715970:three_prime_UTR |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 5_1:-9217514 | Msa0715970:intron |
| TCATTGAGGAAGCGAGGAAG+AGG | 0.514249 | 5_1:-9216092 | Msa0715970:CDS |
| TAAGAAGCGTATGTGGATAT+GGG | 0.516759 | 5_1:+9218722 | None:intergenic |
| TTCATACCCATGAATCCAGC+TGG | 0.521349 | 5_1:+9217508 | None:intergenic |
| CCATACCTGAACACCTATGA+TGG | 0.523294 | 5_1:-9216426 | Msa0715970:CDS |
| CTGAACGTGGATTGTCTCAA+AGG | 0.529462 | 5_1:+9216224 | None:intergenic |
| GGCTAATGACACTATCAAGC+TGG | 0.530045 | 5_1:-9216370 | Msa0715970:CDS |
| GCCATGGGTTTCTCTTCCCA+AGG | 0.532349 | 5_1:-9216136 | Msa0715970:CDS |
| GGTTTCTCTTCCCAAGGGCA+AGG | 0.533054 | 5_1:-9216130 | Msa0715970:CDS |
| TGACACTATCAAGCTGGACC+TGG | 0.533062 | 5_1:-9216364 | Msa0715970:CDS |
| TGATGACGGGGTCTGGGTAA+CGG | 0.533614 | 5_1:+9216394 | None:intergenic |
| AATTTAATACCCTTGCCCTT+GGG | 0.533880 | 5_1:+9216120 | None:intergenic |
| TTGGCAAGGGGACAAAGCCA+TGG | 0.543228 | 5_1:-9216152 | Msa0715970:CDS |
| TCAGTGCAATTTGGGCAGAA+AGG | 0.544106 | 5_1:-9216453 | Msa0715970:CDS |
| GGGAATGTAGTTATGGTGAC+TGG | 0.550052 | 5_1:-9216303 | Msa0715970:CDS |
| GACTTGTGTGGTCCAGATGA+GGG | 0.550628 | 5_1:+9217664 | None:intergenic |
| TATTAAATTAACTGTCATTG+AGG | 0.555206 | 5_1:-9216106 | Msa0715970:CDS |
| CAATGTGTTCACTATTGGCA+AGG | 0.556225 | 5_1:-9216166 | Msa0715970:CDS |
| CAGTATCTAAGAAGCGTATG+TGG | 0.568178 | 5_1:+9218715 | None:intergenic |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 5_1:+9217800 | None:intergenic |
| GGACTTGTGTGGTCCAGATG+AGG | 0.570686 | 5_1:+9217663 | None:intergenic |
| GTTTCTCTTCCCAAGGGCAA+GGG | 0.571738 | 5_1:-9216129 | Msa0715970:CDS |
| TGGCAAGGGGACAAAGCCAT+GGG | 0.585049 | 5_1:-9216151 | Msa0715970:CDS |
| TGACTGAATGGAGACGGAAA+CGG | 0.588177 | 5_1:+9216985 | None:intergenic |
| CATCTCTGACTGAATGGAGA+CGG | 0.590006 | 5_1:+9216979 | None:intergenic |
| AGTCAGAGATGATGAGGCAA+AGG | 0.591111 | 5_1:-9216967 | Msa0715970:intron |
| CCATTCAGTCAGAGATGATG+AGG | 0.595121 | 5_1:-9216973 | Msa0715970:CDS |
| AAGAACAGAGAAAAGCATAA+GGG | 0.598361 | 5_1:-9216249 | Msa0715970:CDS |
| AATGTGTTCACTATTGGCAA+GGG | 0.602196 | 5_1:-9216165 | Msa0715970:CDS |
| ATCTGGACCACACAAGTCCA+GGG | 0.607205 | 5_1:-9217659 | Msa0715970:CDS |
| GATCAACTGGTATTATGGTA+AGG | 0.613517 | 5_1:+9215815 | None:intergenic |
| ATCCACGTTCAGGATGCCAC+TGG | 0.616221 | 5_1:-9216213 | Msa0715970:CDS |
| GACCAGTGGCATCCTGAACG+TGG | 0.616751 | 5_1:+9216211 | None:intergenic |
| CCATGGGTTTCTCTTCCCAA+GGG | 0.618310 | 5_1:-9216135 | Msa0715970:CDS |
| TTTCGCAAGATCAGAATGAG+TGG | 0.619970 | 5_1:+9217628 | None:intergenic |
| GTTTGAAGAAGCATTTGAAG+AGG | 0.620222 | 5_1:-9217831 | Msa0715970:CDS |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 5_1:-9217523 | Msa0715970:CDS |
| CAACTGGTATTATGGTAAGG+TGG | 0.623332 | 5_1:+9215818 | None:intergenic |
| TAACTGTCATTGAGGAAGCG+AGG | 0.626309 | 5_1:-9216098 | Msa0715970:CDS |
| CATTGAGGAAGCGAGGAAGA+GGG | 0.627076 | 5_1:-9216091 | Msa0715970:CDS |
| CGTTTGCTGTATGACACCAA+AGG | 0.627898 | 5_1:-9217008 | Msa0715970:CDS |
| AGTGTCATTAGCCCTGATGA+CGG | 0.628940 | 5_1:+9216380 | None:intergenic |
| ATGGCAGTTCAAGCTGTGCA+AGG | 0.628961 | 5_1:-9216481 | Msa0715970:intron |
| CACTATCAAGCTGGACCTGG+AGG | 0.630561 | 5_1:-9216361 | Msa0715970:CDS |
| GTGACTGGTGGTAAGAATAG+GGG | 0.630861 | 5_1:-9216288 | Msa0715970:CDS |
| TTCGCAAGATCAGAATGAGT+GGG | 0.633304 | 5_1:+9217629 | None:intergenic |
| TCCTGACTTTGCCATCAACA+AGG | 0.633379 | 5_1:+9217545 | None:intergenic |
| TGTCATTAGCCCTGATGACG+GGG | 0.640624 | 5_1:+9216382 | None:intergenic |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 5_1:+9217801 | None:intergenic |
| TTACCCAGACCCCGTCATCA+GGG | 0.650709 | 5_1:-9216391 | Msa0715970:CDS |
| AGACATTCCCTGGACTTGTG+TGG | 0.650760 | 5_1:+9217652 | None:intergenic |
| CTACAGAGTGGAGAGAGTGA+TGG | 0.653601 | 5_1:+9218646 | None:intergenic |
| CCCTTGGGAAGAGAAACCCA+TGG | 0.658024 | 5_1:+9216135 | None:intergenic |
| TGACTGGTGGTAAGAATAGG+GGG | 0.662881 | 5_1:-9216287 | Msa0715970:CDS |
| ATGTGTTCACTATTGGCAAG+GGG | 0.666865 | 5_1:-9216164 | Msa0715970:CDS |
| TCTTCGCAGCAGCTACAGAG+TGG | 0.669596 | 5_1:+9218634 | None:intergenic |
| TTGTGAATGTAACAGGCGAG+GGG | 0.684781 | 5_1:-9217853 | Msa0715970:intron |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 5_1:-9217790 | Msa0715970:CDS |
| AGTTGCAAACTCATGACCAG+TGG | 0.709942 | 5_1:+9216197 | None:intergenic |
| GAGTGGAGAGAGTGATGGTG+CGG | 0.718303 | 5_1:+9218651 | None:intergenic |
| AATGTAGTTATGGTGACTGG+TGG | 0.733221 | 5_1:-9216300 | Msa0715970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATCATTATTTATTTTCT+GGG | - | chr5_1:9216004-9216023 | Msa0715970:intron | 10.0% |
| !! | ACATTAAAATCAAATATAAA+CGG | + | chr5_1:9216096-9216115 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAAATACAATCA+AGG | + | chr5_1:9217378-9217397 | None:intergenic | 10.0% |
| !!! | TTTTTTAAAATATTTGTATC+TGG | - | chr5_1:9217386-9217405 | Msa0715970:intron | 10.0% |
| !!! | CTTTATCATTATTTATTTTC+TGG | - | chr5_1:9216003-9216022 | Msa0715970:intron | 15.0% |
| !!! | GTAATTTGATTTATGATATT+AGG | - | chr5_1:9216064-9216083 | Msa0715970:CDS | 15.0% |
| !! | CAAATTCAAAAATTTATCTT+AGG | + | chr5_1:9216578-9216597 | None:intergenic | 15.0% |
| !!! | CTAAGATAAATTTTTGAATT+TGG | - | chr5_1:9216576-9216595 | Msa0715970:intron | 15.0% |
| !!! | ATTTTTTGCATGAAATTTAT+AGG | - | chr5_1:9216761-9216780 | Msa0715970:intron | 15.0% |
| !! | ATATTATAATTAACATGTGA+TGG | - | chr5_1:9217762-9217781 | Msa0715970:intron | 15.0% |
| !! | TTCTTAGATACTGAATATTT+AGG | - | chr5_1:9215751-9215770 | Msa0715970:three_prime_UTR | 20.0% |
| !! | TCTTAGATACTGAATATTTA+GGG | - | chr5_1:9215752-9215771 | Msa0715970:three_prime_UTR | 20.0% |
| !! | TATCATAAATCAAATTACAC+AGG | + | chr5_1:9216062-9216081 | None:intergenic | 20.0% |
| !! | AAAAAATAAACCAATCCAAA+CGG | + | chr5_1:9216203-9216222 | None:intergenic | 20.0% |
| !!! | ATCATATTTCAATTGATTCA+AGG | - | chr5_1:9216710-9216729 | Msa0715970:intron | 20.0% |
| !! | ATTCTATGAATCATTTGATT+TGG | - | chr5_1:9217346-9217365 | Msa0715970:intron | 20.0% |
| !!! | AGATTTATTTTATGTATGCA+TGG | - | chr5_1:9217840-9217859 | Msa0715970:CDS | 20.0% |
| !! | ATTTCATCAAATTTGATGTT+GGG | - | chr5_1:9218133-9218152 | Msa0715970:intron | 20.0% |
| !! | TATTAAATTAACTGTCATTG+AGG | - | chr5_1:9218350-9218369 | Msa0715970:intron | 20.0% |
| !! | TTATCATTCAAGCTTAATAT+TGG | - | chr5_1:9218577-9218596 | Msa0715970:intron | 20.0% |
| !! | GTTTGTTGCGAAAATTTATT+TGG | - | chr5_1:9216026-9216045 | Msa0715970:intron | 25.0% |
| !! | CGAAAATTTATTTGGAGTTT+AGG | - | chr5_1:9216034-9216053 | Msa0715970:three_prime_UTR | 25.0% |
| ! | TCAATCAAGCTCAAAATTAA+GGG | + | chr5_1:9216125-9216144 | None:intergenic | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | - | chr5_1:9216396-9216415 | Msa0715970:CDS | 25.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr5_1:9216397-9216416 | Msa0715970:CDS | 25.0% |
| !!! | GAACTTTGATTTTTGATCTT+AGG | - | chr5_1:9216440-9216459 | Msa0715970:CDS | 25.0% |
| ! | TGATGTATTATAGCAAAGTA+TGG | - | chr5_1:9217097-9217116 | Msa0715970:intron | 25.0% |
| !!! | GTTTTATCTGAAGTTAAAAG+TGG | - | chr5_1:9217169-9217188 | Msa0715970:intron | 25.0% |
| ! | AGAGATCAGTAATCAAATAA+AGG | + | chr5_1:9217517-9217536 | None:intergenic | 25.0% |
| ! | GATTTCATCAAATTTGATGT+TGG | - | chr5_1:9218132-9218151 | Msa0715970:intron | 25.0% |
| ! | CTTGAATGATAACACAAAAA+AGG | + | chr5_1:9218569-9218588 | None:intergenic | 25.0% |
| ! | TTCAAGCTTAATATTGGTAA+TGG | - | chr5_1:9218583-9218602 | Msa0715970:intron | 25.0% |
| AGAAGGAGAAAAATCGAAAA+TGG | - | chr5_1:9215842-9215861 | Msa0715970:three_prime_UTR | 30.0% | |
| TTTGAATCTCATCTTCGTAA+TGG | - | chr5_1:9215903-9215922 | Msa0715970:three_prime_UTR | 30.0% | |
| CTCAATCAAGCTCAAAATTA+AGG | + | chr5_1:9216126-9216145 | None:intergenic | 30.0% | |
| TAAATAAGTCGATCCAAACA+TGG | - | chr5_1:9216168-9216187 | Msa0715970:CDS | 30.0% | |
| ATGTTAAACACACGACATAA+AGG | + | chr5_1:9216502-9216521 | None:intergenic | 30.0% | |
| GCAAAAAATTACATCAGTCT+TGG | + | chr5_1:9216750-9216769 | None:intergenic | 30.0% | |
| GTATTATAGCAAAGTATGGT+AGG | - | chr5_1:9217101-9217120 | Msa0715970:intron | 30.0% | |
| TTAGACGATCTATTGTAACA+TGG | + | chr5_1:9217216-9217235 | None:intergenic | 30.0% | |
| ATGAAAAACATGCCAAATAC+TGG | + | chr5_1:9217244-9217263 | None:intergenic | 30.0% | |
| ! | TTTGGCATGTTTTTCATTAC+TGG | - | chr5_1:9217247-9217266 | Msa0715970:intron | 30.0% |
| ATTCATAGAATTCTTTCACG+AGG | + | chr5_1:9217337-9217356 | None:intergenic | 30.0% | |
| ATGGTGTAATTAACATGTGA+TGG | - | chr5_1:9217859-9217878 | Msa0715970:intron | 30.0% | |
| ! | AAGAACAGAGAAAAGCATAA+GGG | - | chr5_1:9218207-9218226 | Msa0715970:intron | 30.0% |
| ! | TGAACGTCTTCTATCAATTT+TGG | - | chr5_1:9218488-9218507 | Msa0715970:intron | 30.0% |
| CAAAAAAGGACTATAAGTAG+AGG | + | chr5_1:9218555-9218574 | None:intergenic | 30.0% | |
| TATGTGATCAACTGGTATTA+TGG | + | chr5_1:9218649-9218668 | None:intergenic | 30.0% | |
| ! | TAAGAAGCGTATGTGGATAT+GGG | + | chr5_1:9215737-9215756 | None:intergenic | 35.0% |
| ! | ACACAGTGTTGTTACTGAAA+TGG | - | chr5_1:9215967-9215986 | Msa0715970:three_prime_UTR | 35.0% |
| TCGATCCAAACATGGTTTAA+TGG | - | chr5_1:9216176-9216195 | Msa0715970:CDS | 35.0% | |
| CGATCCAAACATGGTTTAAT+GGG | - | chr5_1:9216177-9216196 | Msa0715970:CDS | 35.0% | |
| GCATTATTCACAACATGTCA+AGG | - | chr5_1:9216264-9216283 | Msa0715970:CDS | 35.0% | |
| TGGATGTTTGTGAATGTAAC+AGG | - | chr5_1:9216596-9216615 | Msa0715970:intron | 35.0% | |
| !! | GTTTGAAGAAGCATTTGAAG+AGG | - | chr5_1:9216625-9216644 | Msa0715970:intron | 35.0% |
| CATTGGATGCTTGACAAATT+GGG | - | chr5_1:9216663-9216682 | Msa0715970:intron | 35.0% | |
| TCAGAATAGCAATGACTTCA+CGG | + | chr5_1:9216878-9216897 | None:intergenic | 35.0% | |
| TTTGGACAATCAACATGCTT+TGG | - | chr5_1:9217009-9217028 | Msa0715970:CDS | 35.0% | |
| AGCAAAGTATGGTAGGTAAA+CGG | - | chr5_1:9217108-9217127 | Msa0715970:intron | 35.0% | |
| TAAACAAGTTGCCTGATCTT+CGG | - | chr5_1:9217308-9217327 | Msa0715970:intron | 35.0% | |
| !! | TGAATCATTTGATTTGGCTG+TGG | - | chr5_1:9217352-9217371 | Msa0715970:intron | 35.0% |
| GAAAGCTCTCATTTGTCTTA+GGG | + | chr5_1:9217429-9217448 | None:intergenic | 35.0% | |
| AAGCCATTCATAGTATGCTA+CGG | + | chr5_1:9217563-9217582 | None:intergenic | 35.0% | |
| TTCCTTGTATGTGATGTACA+TGG | - | chr5_1:9217956-9217975 | Msa0715970:intron | 35.0% | |
| TGATGTTGGGAATGTAGTTA+TGG | - | chr5_1:9218146-9218165 | Msa0715970:intron | 35.0% | |
| ! | CAAGAACAGAGAAAAGCATA+AGG | - | chr5_1:9218206-9218225 | Msa0715970:intron | 35.0% |
| AATGTGTTCACTATTGGCAA+GGG | - | chr5_1:9218291-9218310 | Msa0715970:intron | 35.0% | |
| AATTTAATACCCTTGCCCTT+GGG | + | chr5_1:9218339-9218358 | None:intergenic | 35.0% | |
| TAATTTAATACCCTTGCCCT+TGG | + | chr5_1:9218340-9218359 | None:intergenic | 35.0% | |
| GATCAACTGGTATTATGGTA+AGG | + | chr5_1:9218644-9218663 | None:intergenic | 35.0% | |
| ACATAACCAGAGCTGAAATT+GGG | - | chr5_1:9218664-9218683 | Msa0715970:five_prime_UTR | 35.0% | |
| TAAAATCCCAATTTCAGCTC+TGG | + | chr5_1:9218673-9218692 | None:intergenic | 35.0% | |
| ! | CTAAGAAGCGTATGTGGATA+TGG | + | chr5_1:9215738-9215757 | None:intergenic | 40.0% |
| ! | CAGTATCTAAGAAGCGTATG+TGG | + | chr5_1:9215744-9215763 | None:intergenic | 40.0% |
| TTTGTGAATGTAACAGGCGA+GGG | - | chr5_1:9216602-9216621 | Msa0715970:intron | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | + | chr5_1:9216660-9216679 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | + | chr5_1:9216661-9216680 | None:intergenic | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | - | chr5_1:9216662-9216681 | Msa0715970:intron | 40.0% | |
| TTCGCAAGATCAGAATGAGT+GGG | + | chr5_1:9216830-9216849 | None:intergenic | 40.0% | |
| TTTCGCAAGATCAGAATGAG+TGG | + | chr5_1:9216831-9216850 | None:intergenic | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | - | chr5_1:9216942-9216961 | Msa0715970:intron | 40.0% | |
| CGTCTAAGTTCACCAGTATT+TGG | - | chr5_1:9217229-9217248 | Msa0715970:intron | 40.0% | |
| CGAAAGCTCTCATTTGTCTT+AGG | + | chr5_1:9217430-9217449 | None:intergenic | 40.0% | |
| ACTCCGTAGCATACTATGAA+TGG | - | chr5_1:9217557-9217576 | Msa0715970:CDS | 40.0% | |
| GTGATGGTTGTTACTGTGAA+TGG | - | chr5_1:9217778-9217797 | Msa0715970:intron | 40.0% | |
| TGCCATGTACATCACATACA+AGG | + | chr5_1:9217961-9217980 | None:intergenic | 40.0% | |
| AAGGTTCGTTCAGTGCAATT+TGG | - | chr5_1:9217994-9218013 | Msa0715970:intron | 40.0% | |
| AGGTTCGTTCAGTGCAATTT+GGG | - | chr5_1:9217995-9218014 | Msa0715970:intron | 40.0% | |
| !!! | CAACAATCTTGTTTTCCTCC+AGG | + | chr5_1:9218113-9218132 | None:intergenic | 40.0% |
| AATGTAGTTATGGTGACTGG+TGG | - | chr5_1:9218156-9218175 | Msa0715970:intron | 40.0% | |
| CTGGTCAATGTGTTCACTAT+TGG | - | chr5_1:9218285-9218304 | Msa0715970:intron | 40.0% | |
| CAATGTGTTCACTATTGGCA+AGG | - | chr5_1:9218290-9218309 | Msa0715970:intron | 40.0% | |
| ATGTGTTCACTATTGGCAAG+GGG | - | chr5_1:9218292-9218311 | Msa0715970:intron | 40.0% | |
| CAACTGGTATTATGGTAAGG+TGG | + | chr5_1:9218641-9218660 | None:intergenic | 40.0% | |
| CACATAACCAGAGCTGAAAT+TGG | - | chr5_1:9218663-9218682 | Msa0715970:five_prime_UTR | 40.0% | |
| ACGGCCCATTAAACCATGTT+TGG | + | chr5_1:9216184-9216203 | None:intergenic | 45.0% | |
| ! | ACATGGTTTAATGGGCCGTT+TGG | - | chr5_1:9216185-9216204 | Msa0715970:CDS | 45.0% |
| ! | GTTTAATGGGCCGTTTGGAT+TGG | - | chr5_1:9216190-9216209 | Msa0715970:CDS | 45.0% |
| ! | TCCAAACGGGTTCTTAGTGT+TGG | - | chr5_1:9216410-9216429 | Msa0715970:CDS | 45.0% |
| ACCAACACTAAGAACCCGTT+TGG | + | chr5_1:9216414-9216433 | None:intergenic | 45.0% | |
| GTTTGTGAATGTAACAGGCG+AGG | - | chr5_1:9216601-9216620 | Msa0715970:intron | 45.0% | |
| TTGTGAATGTAACAGGCGAG+GGG | - | chr5_1:9216603-9216622 | Msa0715970:intron | 45.0% | |
| TGTCAAGCATCCAATGCTTG+GGG | + | chr5_1:9216659-9216678 | None:intergenic | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | - | chr5_1:9216666-9216685 | Msa0715970:intron | 45.0% | |
| CAACGACATGTCCTTGTTGA+TGG | - | chr5_1:9216900-9216919 | Msa0715970:intron | 45.0% | |
| !! | TCCTTGTTGATGGCAAAGTC+AGG | - | chr5_1:9216910-9216929 | Msa0715970:intron | 45.0% |
| TCCTGACTTTGCCATCAACA+AGG | + | chr5_1:9216914-9216933 | None:intergenic | 45.0% | |
| ACTGACAAGACTTATCCAGC+TGG | - | chr5_1:9216933-9216952 | Msa0715970:intron | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | - | chr5_1:9216941-9216960 | Msa0715970:intron | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | + | chr5_1:9216951-9216970 | None:intergenic | 45.0% | |
| !! | CGTTTGCTGTATGACACCAA+AGG | - | chr5_1:9217448-9217467 | Msa0715970:intron | 45.0% |
| TGACTGAATGGAGACGGAAA+CGG | + | chr5_1:9217474-9217493 | None:intergenic | 45.0% | |
| CATCTCTGACTGAATGGAGA+CGG | + | chr5_1:9217480-9217499 | None:intergenic | 45.0% | |
| CCTCATCATCTCTGACTGAA+TGG | + | chr5_1:9217486-9217505 | None:intergenic | 45.0% | |
| CCATTCAGTCAGAGATGATG+AGG | - | chr5_1:9217483-9217502 | Msa0715970:intron | 45.0% | |
| AGTCAGAGATGATGAGGCAA+AGG | - | chr5_1:9217489-9217508 | Msa0715970:intron | 45.0% | |
| TCAGTGCAATTTGGGCAGAA+AGG | - | chr5_1:9218003-9218022 | Msa0715970:intron | 45.0% | |
| CCATCATAGGTGTTCAGGTA+TGG | + | chr5_1:9218033-9218052 | None:intergenic | 45.0% | |
| CCATACCTGAACACCTATGA+TGG | - | chr5_1:9218030-9218049 | Msa0715970:intron | 45.0% | |
| ! | AGTGTCATTAGCCCTGATGA+CGG | + | chr5_1:9218079-9218098 | None:intergenic | 45.0% |
| GGCTAATGACACTATCAAGC+TGG | - | chr5_1:9218086-9218105 | Msa0715970:intron | 45.0% | |
| GGGAATGTAGTTATGGTGAC+TGG | - | chr5_1:9218153-9218172 | Msa0715970:intron | 45.0% | |
| TGGTGACTGGTGGTAAGAAT+AGG | - | chr5_1:9218166-9218185 | Msa0715970:intron | 45.0% | |
| GGTGACTGGTGGTAAGAATA+GGG | - | chr5_1:9218167-9218186 | Msa0715970:intron | 45.0% | |
| GTGACTGGTGGTAAGAATAG+GGG | - | chr5_1:9218168-9218187 | Msa0715970:intron | 45.0% | |
| TGACTGGTGGTAAGAATAGG+GGG | - | chr5_1:9218169-9218188 | Msa0715970:intron | 45.0% | |
| ! | CTGAACGTGGATTGTCTCAA+AGG | + | chr5_1:9218235-9218254 | None:intergenic | 45.0% |
| !! | CTTTGAGACAATCCACGTTC+AGG | - | chr5_1:9218233-9218252 | Msa0715970:intron | 45.0% |
| AGTTGCAAACTCATGACCAG+TGG | + | chr5_1:9218262-9218281 | None:intergenic | 45.0% | |
| TCATGAGTTTGCAACTCGTC+TGG | - | chr5_1:9218266-9218285 | Msa0715970:intron | 45.0% | |
| TAACTGTCATTGAGGAAGCG+AGG | - | chr5_1:9218358-9218377 | Msa0715970:intron | 45.0% | |
| GCTCTGGTTATGTGATCAAC+TGG | + | chr5_1:9218657-9218676 | None:intergenic | 45.0% | |
| !!! | AATAATTGATTAATTTATTT+TGG | - | chr5_1:9216991-9217010 | Msa0715970:CDS | 5.0% |
| CTACAGAGTGGAGAGAGTGA+TGG | + | chr5_1:9215813-9215832 | None:intergenic | 50.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | + | chr5_1:9216658-9216677 | None:intergenic | 50.0% | |
| TAGGCTCCTAAACCCTCATC+TGG | - | chr5_1:9216780-9216799 | Msa0715970:intron | 50.0% | |
| TGTGGTCCAGATGAGGGTTT+AGG | + | chr5_1:9216789-9216808 | None:intergenic | 50.0% | |
| GACTTGTGTGGTCCAGATGA+GGG | + | chr5_1:9216795-9216814 | None:intergenic | 50.0% | |
| ATCTGGACCACACAAGTCCA+GGG | - | chr5_1:9216797-9216816 | Msa0715970:intron | 50.0% | |
| AGACATTCCCTGGACTTGTG+TGG | + | chr5_1:9216807-9216826 | None:intergenic | 50.0% | |
| AATGAGTGGGAGACATTCCC+TGG | + | chr5_1:9216817-9216836 | None:intergenic | 50.0% | |
| TCACGAGGATACCGAAGATC+AGG | + | chr5_1:9217322-9217341 | None:intergenic | 50.0% | |
| ATGGCAGTTCAAGCTGTGCA+AGG | - | chr5_1:9217975-9217994 | Msa0715970:intron | 50.0% | |
| TGCGACCATCATAGGTGTTC+AGG | + | chr5_1:9218038-9218057 | None:intergenic | 50.0% | |
| ACGGATAGTGCGACCATCAT+AGG | + | chr5_1:9218046-9218065 | None:intergenic | 50.0% | |
| ! | TGTCATTAGCCCTGATGACG+GGG | + | chr5_1:9218077-9218096 | None:intergenic | 50.0% |
| ! | GTGTCATTAGCCCTGATGAC+GGG | + | chr5_1:9218078-9218097 | None:intergenic | 50.0% |
| TGACACTATCAAGCTGGACC+TGG | - | chr5_1:9218092-9218111 | Msa0715970:intron | 50.0% | |
| CCATGGGTTTCTCTTCCCAA+GGG | - | chr5_1:9218321-9218340 | Msa0715970:intron | 50.0% | |
| GTTTCTCTTCCCAAGGGCAA+GGG | - | chr5_1:9218327-9218346 | Msa0715970:intron | 50.0% | |
| TCATTGAGGAAGCGAGGAAG+AGG | - | chr5_1:9218364-9218383 | Msa0715970:intron | 50.0% | |
| CATTGAGGAAGCGAGGAAGA+GGG | - | chr5_1:9218365-9218384 | Msa0715970:intron | 50.0% | |
| ! | GAGTGGAGAGAGTGATGGTG+CGG | + | chr5_1:9215808-9215827 | None:intergenic | 55.0% |
| TCTTCGCAGCAGCTACAGAG+TGG | + | chr5_1:9215825-9215844 | None:intergenic | 55.0% | |
| CTCTGTAGCTGCTGCGAAGA+AGG | - | chr5_1:9215825-9215844 | Msa0715970:three_prime_UTR | 55.0% | |
| GGACTTGTGTGGTCCAGATG+AGG | + | chr5_1:9216796-9216815 | None:intergenic | 55.0% | |
| CATCTGGACCACACAAGTCC+AGG | - | chr5_1:9216796-9216815 | Msa0715970:intron | 55.0% | |
| ATGGAGACGGAAACGGCCTT+TGG | + | chr5_1:9217467-9217486 | None:intergenic | 55.0% | |
| !! | TGATGACGGGGTCTGGGTAA+CGG | + | chr5_1:9218065-9218084 | None:intergenic | 55.0% |
| TTACCCAGACCCCGTCATCA+GGG | - | chr5_1:9218065-9218084 | Msa0715970:intron | 55.0% | |
| CACTATCAAGCTGGACCTGG+AGG | - | chr5_1:9218095-9218114 | Msa0715970:intron | 55.0% | |
| ! | GGTAAGAATAGGGGGCGTGT+TGG | - | chr5_1:9218177-9218196 | Msa0715970:intron | 55.0% |
| ATCCACGTTCAGGATGCCAC+TGG | - | chr5_1:9218243-9218262 | Msa0715970:intron | 55.0% | |
| TTGGCAAGGGGACAAAGCCA+TGG | - | chr5_1:9218304-9218323 | Msa0715970:intron | 55.0% | |
| TGGCAAGGGGACAAAGCCAT+GGG | - | chr5_1:9218305-9218324 | Msa0715970:intron | 55.0% | |
| GCCATGGGTTTCTCTTCCCA+AGG | - | chr5_1:9218320-9218339 | Msa0715970:intron | 55.0% | |
| CCCTTGGGAAGAGAAACCCA+TGG | + | chr5_1:9218324-9218343 | None:intergenic | 55.0% | |
| GGTTTCTCTTCCCAAGGGCA+AGG | - | chr5_1:9218326-9218345 | Msa0715970:intron | 55.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | - | chr5_1:9216646-9216665 | Msa0715970:intron | 60.0% | |
| GTTACCCAGACCCCGTCATC+AGG | - | chr5_1:9218064-9218083 | Msa0715970:intron | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | + | chr5_1:9218071-9218090 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | + | chr5_1:9218072-9218091 | None:intergenic | 60.0% |
| GACCAGTGGCATCCTGAACG+TGG | + | chr5_1:9218248-9218267 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 9215734 | 9218744 | 9215734 | ID=Msa0715970;Name=Msa0715970 |
| chr5_1 | mRNA | 9215734 | 9218744 | 9215734 | ID=Msa0715970-mRNA-1;Parent=Msa0715970;Name=Msa0715970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=127|1|1|1|0.8|0.66|6|305|265 |
| chr5_1 | exon | 9215734 | 9216012 | 9215734 | ID=Msa0715970-mRNA-1:exon:3745;Parent=Msa0715970-mRNA-1 |
| chr5_1 | exon | 9216033 | 9216496 | 9216033 | ID=Msa0715970-mRNA-1:exon:3744;Parent=Msa0715970-mRNA-1 |
| chr5_1 | exon | 9216968 | 9217065 | 9216968 | ID=Msa0715970-mRNA-1:exon:3743;Parent=Msa0715970-mRNA-1 |
| chr5_1 | exon | 9217515 | 9217695 | 9217515 | ID=Msa0715970-mRNA-1:exon:3742;Parent=Msa0715970-mRNA-1 |
| chr5_1 | exon | 9217783 | 9217860 | 9217783 | ID=Msa0715970-mRNA-1:exon:3741;Parent=Msa0715970-mRNA-1 |
| chr5_1 | exon | 9218615 | 9218744 | 9218615 | ID=Msa0715970-mRNA-1:exon:3740;Parent=Msa0715970-mRNA-1 |
| chr5_1 | five_prime_UTR | 9218618 | 9218744 | 9218618 | ID=Msa0715970-mRNA-1:five_prime_utr;Parent=Msa0715970-mRNA-1 |
| chr5_1 | CDS | 9218615 | 9218617 | 9218615 | ID=Msa0715970-mRNA-1:cds;Parent=Msa0715970-mRNA-1 |
| chr5_1 | CDS | 9217783 | 9217860 | 9217783 | ID=Msa0715970-mRNA-1:cds;Parent=Msa0715970-mRNA-1 |
| chr5_1 | CDS | 9217515 | 9217695 | 9217515 | ID=Msa0715970-mRNA-1:cds;Parent=Msa0715970-mRNA-1 |
| chr5_1 | CDS | 9216968 | 9217065 | 9216968 | ID=Msa0715970-mRNA-1:cds;Parent=Msa0715970-mRNA-1 |
| chr5_1 | CDS | 9216059 | 9216496 | 9216059 | ID=Msa0715970-mRNA-1:cds;Parent=Msa0715970-mRNA-1 |
| chr5_1 | three_prime_UTR | 9216033 | 9216058 | 9216033 | ID=Msa0715970-mRNA-1:three_prime_utr;Parent=Msa0715970-mRNA-1 |
| chr5_1 | three_prime_UTR | 9215734 | 9216012 | 9215734 | ID=Msa0715970-mRNA-1:three_prime_utr;Parent=Msa0715970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
