AlfalfaGEDB | Msa0419710

M. sativa cultivar zhongmu-4 / Msa0419710

KEGG: K02877
GO: -
PFAM: PF00827.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419710	XP_013461067.1	100.000	204	0	0	1	204	1	204	7.37e-146	414

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419710	sp\|O82528\|RL15_PETHY	88.235	204	24	0	1	204	1	204	7.90e-131	369

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419710	I3T9M3	100.000	204	0	0	1	204	1	204	3.52e-146	414

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032780	Msa0419710	0.801603	8.330223e-49	-8.615850e-47
Msa0086160	Msa0419710	0.848587	5.574342e-60	-8.615850e-47
Msa0087910	Msa0419710	0.840475	8.505308e-58	-8.615850e-47
Msa0114600	Msa0419710	0.910464	1.819669e-82	-8.615850e-47
Msa0128330	Msa0419710	0.817238	3.658330e-52	-8.615850e-47
Msa0134580	Msa0419710	0.834140	3.560981e-56	-8.615850e-47
Msa0146610	Msa0419710	0.819512	1.116977e-52	-8.615850e-47
Msa0167860	Msa0419710	0.862496	4.862870e-64	-8.615850e-47
Msa0174580	Msa0419710	0.831235	1.872345e-55	-8.615850e-47
Msa0191550	Msa0419710	0.803653	3.145598e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419710	MtrunA17_Chr3g0118291	100.000	204	0	1	204	1	204	6.78e-150	414
Msa0419710	MtrunA17_Chr2g0282541	99.510	204	1	1	204	49	252	1.89e-149	415
Msa0419710	MtrunA17_Chr7g0224171	90.323	62	6	1	62	1	62	1.93e-35	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419710	AT4G16720.1	88.235	204	24	0	1	204	1	204	9.00e-122	343
Msa0419710	AT4G17390.1	87.745	204	25	0	1	204	1	204	1.88e-121	342

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Find 98 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAATAGAGGTTTGAG+TGG	0.595531	3_2:-67855501	Msa0419710:CDS
AAATAACAAATGATCAAACA+AGG	0.582529	3_2:+67855243	None:intergenic
AAATAGAGGTTTGAGTGGCA+AGG	0.588102	3_2:-67855496	Msa0419710:CDS
AACAACCAAAACGAGTTTCT+AGG	0.272413	3_2:+67855282	None:intergenic
AACGGTAACGGCGGAGAGAC+AGG	0.416120	3_2:+67855415	None:intergenic
AATAACAAATGATCAAACAA+GGG	0.663287	3_2:+67855244	None:intergenic
AATAACTGCAGTAAAATCAA+CGG	0.631423	3_2:+67855397	None:intergenic
AATAGAGGTTTGAGTGGCAA+GGG	0.585122	3_2:-67855495	Msa0419710:CDS
AATGACCTCGAAATATTTGA+AGG	0.445755	3_2:+67855629	None:intergenic
ACAAACCTCATTGACCCAGT+AGG	0.645250	3_2:+67855745	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCATACAGAAACAAAAGCA+TGG	+	chr3_2:67855026-67855045	None:intergenic	30.0%
TATTCTACTAGTTAACACCT+GGG	-	chr3_2:67855558-67855577	Msa0419710:CDS	30.0%
CATGTTTACAAAATGAAGCA+AGG	+	chr3_2:67856070-67856089	None:intergenic	30.0%
GAACTAGTTGAAGTTCAATT+TGG	-	chr3_2:67856336-67856355	Msa0419710:intron	30.0%
TAGCACAAAACAAAACAATG+GGG	+	chr3_2:67856389-67856408	None:intergenic	30.0%
GTAGCACAAAACAAAACAAT+GGG	+	chr3_2:67856390-67856409	None:intergenic	30.0%
TGTAGCACAAAACAAAACAA+TGG	+	chr3_2:67856391-67856410	None:intergenic	30.0%
TTCTACCTTCAAATATTTCG+AGG	-	chr3_2:67856414-67856433	Msa0419710:intron	30.0%
AATGACCTCGAAATATTTGA+AGG	+	chr3_2:67856422-67856441	None:intergenic	30.0%
AAAGAAAATAGAGGTTTGAG+TGG	-	chr3_2:67856547-67856566	Msa0419710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	67854943	67857127	67854943	ID=Msa0419710;Name=Msa0419710
chr3_2	mRNA	67854943	67857127	67854943	ID=Msa0419710-mRNA-1;Parent=Msa0419710;Name=Msa0419710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=49\|1\|1\|1\|0.75\|0.6\|5\|416\|204
chr3_2	exon	67854943	67855040	67854943	ID=Msa0419710-mRNA-1:exon:15912;Parent=Msa0419710-mRNA-1
chr3_2	exon	67855095	67855658	67855095	ID=Msa0419710-mRNA-1:exon:15911;Parent=Msa0419710-mRNA-1
chr3_2	exon	67855751	67855948	67855751	ID=Msa0419710-mRNA-1:exon:15910;Parent=Msa0419710-mRNA-1
chr3_2	exon	67856808	67856974	67856808	ID=Msa0419710-mRNA-1:exon:15909;Parent=Msa0419710-mRNA-1
chr3_2	exon	67857075	67857127	67857075	ID=Msa0419710-mRNA-1:exon:15908;Parent=Msa0419710-mRNA-1
chr3_2	five_prime_UTR	67857079	67857127	67857079	ID=Msa0419710-mRNA-1:five_prime_utr;Parent=Msa0419710-mRNA-1
chr3_2	CDS	67857075	67857078	67857075	ID=Msa0419710-mRNA-1:cds;Parent=Msa0419710-mRNA-1
chr3_2	CDS	67856808	67856974	67856808	ID=Msa0419710-mRNA-1:cds;Parent=Msa0419710-mRNA-1
chr3_2	CDS	67855751	67855948	67855751	ID=Msa0419710-mRNA-1:cds;Parent=Msa0419710-mRNA-1
chr3_2	CDS	67855413	67855658	67855413	ID=Msa0419710-mRNA-1:cds;Parent=Msa0419710-mRNA-1
chr3_2	three_prime_UTR	67855095	67855412	67855095	ID=Msa0419710-mRNA-1:three_prime_utr;Parent=Msa0419710-mRNA-1
chr3_2	three_prime_UTR	67854943	67855040	67854943	ID=Msa0419710-mRNA-1:three_prime_utr;Parent=Msa0419710-mRNA-1

Gene Sequence

>Msa0419710

ATGGGTGCCTACAAGTATGTTTCTGAGCTATGGCGCAAGAAGCAATCTGATGTGATGCGATTCATGCAGCGTGTGAGGTGCTGGGAGTATCGTCAGCAATCTTCTATTGTTCGTCTCACCAGACCCACTCGTCCTGACAAGGCTCGTCGTTTGGGTTACAAGGCTAAGCAGGGATATGTCGTGTACCGGGTGAGGGTACGCAGAGGTGGTAGGAAGAGGCCAGTTTCCAAGGGTATTGTTTATGGTAAGCCCACCAACCAGGGAGTTACCCAACTCAAGTTTCAAAGGAGCAAGAGGTCCGTCGCTGAAGAGCGTGCTGGACGGAAGCTTGGTGGTCTTAGGGTTCTCAATTCCTACTGGGTCAATGAGGATTCTACCTTCAAATATTTCGAGGTCATTTTGGTTGATGTTGCTCACAGTGCTATAAGAAATGACCCAAGAATCAACTGGCTCACCAACCCAGTCCACAAGCACAGGGAACTTCGTGGTCTCACTTCTGCTGGAAAAGAAAATAGAGGTTTGAGTGGCAAGGGTCACCGTTACCACAAAGCCCGTCCATCCCGCAGGGCAAACTGGAAGAGAAACAACACCCTGTCTCTCCGCCGTTACCGTTGA

Protein sequence

>Msa0419710

MGAYKYVSELWRKKQSDVMRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTLSLRRYR*