AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1454480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454480 MtrunA17_Chr4g0043241 89.762 420 9 2 1 387 228 646 0.0 754
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454480 AT2G03667.1 63.951 405 118 6 1 385 214 610 2.23e-173 497
Msa1454480 AT2G03667.2 59.897 389 126 7 1 369 214 592 7.52e-152 442

Find 78 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATTTGGAAGAGAAATTT+AGG 0.134029 tig0035206:+4679 Msa1454480:CDS
TTAACATTGGAATAGCTTTA+TGG 0.154371 tig0035206:+3563 Msa1454480:CDS
GAATCAAATCGGAAGAATTT+TGG 0.199066 tig0035206:+5889 Msa1454480:CDS
TATGATACTTGCGGCATTAC+TGG 0.227735 tig0035206:+1590 Msa1454480:CDS
AGGATTCTCCTTGTTGGTTC+TGG 0.256567 tig0035206:+3670 Msa1454480:CDS
AACTCGACATGCAAAGAATT+TGG 0.259227 tig0035206:+4665 Msa1454480:CDS
ATTTGTAGGAAATCAAATTT+TGG 0.264241 tig0035206:+5955 Msa1454480:CDS
CTACTTACTGTAAGCTTTGA+TGG 0.268070 tig0035206:+2349 Msa1454480:CDS
TTAGGCTAGATTTCCATTCT+TGG 0.295521 tig0035206:+4828 Msa1454480:intron
GAATTTGGAAGAGAAATTTA+GGG 0.314158 tig0035206:+4680 Msa1454480:CDS
TCTTGGATGAGGATGTTATA+AGG 0.320991 tig0035206:+4845 Msa1454480:CDS
ATAGCTTTATGGCTCGCTTC+TGG 0.341166 tig0035206:+3574 Msa1454480:CDS
ATTGCATAGGCTGTGATATC+TGG 0.346833 tig0035206:+1510 Msa1454480:intron
GATGAACAGTGTGCTGGTTA+TGG 0.367158 tig0035206:+3697 Msa1454480:CDS
CGCTTCTGGTGGTGATGGAT+GGG 0.378774 tig0035206:+3588 Msa1454480:CDS
CTTGGATGAGGATGTTATAA+GGG 0.386802 tig0035206:+4846 Msa1454480:CDS
TGATGCTGACTTGTCAGATT+TGG 0.390352 tig0035206:+3392 Msa1454480:CDS
CTGAAGGTTGCACAATTGCT+TGG 0.402771 tig0035206:+5718 Msa1454480:intron
TCGCTTCTGGTGGTGATGGA+TGG 0.408976 tig0035206:+3587 Msa1454480:CDS
TCTTCCCAAGCGGGCAATCC+AGG 0.409100 tig0035206:+5759 Msa1454480:CDS
GCACACCTGGATTGCCCGCT+TGG 0.411228 tig0035206:-5764 None:intergenic
AATGCAAGGATTCTCCTTGT+TGG 0.411893 tig0035206:+3664 Msa1454480:CDS
ATGAACAGTGTGCTGGTTAT+GGG 0.415694 tig0035206:+3698 Msa1454480:CDS
GTCATTGTATACTATCTATC+AGG 0.417008 tig0035206:+509 Msa1454480:CDS
CAGGCAGTGTAAGGATTTGT+AGG 0.429146 tig0035206:+5941 Msa1454480:CDS
AAGTAATCGAGCAGCAAATC+AGG 0.431308 tig0035206:+5912 Msa1454480:CDS
ATAAAGCTATTCCAATGTTA+AGG 0.439997 tig0035206:-3561 None:intergenic
AGGCGTCTGCAGGCAGTGTA+AGG 0.458985 tig0035206:+5932 Msa1454480:CDS
CACACCTGGATTGCCCGCTT+GGG 0.462355 tig0035206:-5763 None:intergenic
AGCACTCACAACTGGGATCC+AGG 0.469254 tig0035206:-1620 None:intergenic
TGGCTCGCTTCTGGTGGTGA+TGG 0.475719 tig0035206:+3583 Msa1454480:CDS
ATAGATGTATTGCTGATAAC+GGG 0.477324 tig0035206:+4710 Msa1454480:CDS
GATAGAAAATCTGCCAAGGC+AGG 0.484885 tig0035206:+2385 Msa1454480:CDS
TTTACTCAACATTCCATTGT+GGG 0.487822 tig0035206:+4870 Msa1454480:CDS
TAGTTCTTTCAACCCTGCCT+TGG 0.492382 tig0035206:-2398 None:intergenic
GCAGCAAATCAGGCGTCTGC+AGG 0.493660 tig0035206:+5922 Msa1454480:CDS
TAGATTTCCATTCTTGGATG+AGG 0.494104 tig0035206:+4834 Msa1454480:CDS
TGGATTGCATACCGTCTTGA+CGG 0.499284 tig0035206:-2433 None:intergenic
CCAGAGAAAAGAATTGCAAC+AGG 0.504982 tig0035206:-1555 None:intergenic
GATAGATGTATTGCTGATAA+CGG 0.505667 tig0035206:+4709 Msa1454480:CDS
TATGCCTTAATCAGTTGGCT+AGG 0.505853 tig0035206:+4625 Msa1454480:intron
GAATTGCGAGGGAATCAAAT+CGG 0.518766 tig0035206:+5878 Msa1454480:CDS
GAGACAGTTCCATGCGAAGC+AGG 0.526342 tig0035206:+252 Msa1454480:CDS
GATTAGTACCATGTAGGTGT+TGG 0.527041 tig0035206:-3454 None:intergenic
GCCACTAGGTTGATCAAGGT+TGG 0.537230 tig0035206:-4899 None:intergenic
ATAACATCCTCATCCAAGAA+TGG 0.538611 tig0035206:-4841 None:intergenic
ATGCCTTAATCAGTTGGCTA+GGG 0.546300 tig0035206:+4626 Msa1454480:intron
GGCATTACTGGATCAATGCC+TGG 0.546449 tig0035206:+1602 Msa1454480:CDS
CGATGCCACTAGGTTGATCA+AGG 0.546600 tig0035206:-4903 None:intergenic
AACAAGGAGAATCCTTGCAT+TGG 0.546989 tig0035206:-3662 None:intergenic
GGTGCTGATGAACAGTGTGC+TGG 0.549892 tig0035206:+3691 Msa1454480:CDS
TAGTAATAACCTGCTTCGCA+TGG 0.561332 tig0035206:-261 None:intergenic
CTTGATCAACCTAGTGGCAT+CGG 0.570501 tig0035206:+4904 Msa1454480:CDS
AGCAGCGGTTCTTCCCAAGC+GGG 0.574387 tig0035206:+5750 Msa1454480:CDS
AGTACCATGTAGGTGTTGGA+AGG 0.577841 tig0035206:-3450 None:intergenic
AGCAACATATGAGCTCGCAT+TGG 0.577951 tig0035206:-453 None:intergenic
AAATCCTTCCAACACCTACA+TGG 0.583957 tig0035206:+3446 Msa1454480:CDS
GCTTTATGGCTCGCTTCTGG+TGG 0.587213 tig0035206:+3577 Msa1454480:CDS
GTTTGGTTCTAGAATTGCGA+GGG 0.601355 tig0035206:+5867 Msa1454480:intron
AGGTTGGCAACCTCCCACAA+TGG 0.602775 tig0035206:-4883 None:intergenic
AGGATTGATTAGTACCATGT+AGG 0.603931 tig0035206:-3460 None:intergenic
ACTCAACATTCCATTGTGGG+AGG 0.607103 tig0035206:+4873 Msa1454480:CDS
TTAAATACAAGTCCAATGCA+AGG 0.613359 tig0035206:+3650 Msa1454480:CDS
ATAGAAAATCTGCCAAGGCA+GGG 0.618548 tig0035206:+2386 Msa1454480:CDS
TCCTGATAGAAAATCTGCCA+AGG 0.622329 tig0035206:+2381 Msa1454480:CDS
AAAGGCAGTATAGTAGCACC+AGG 0.624881 tig0035206:-6466 None:intergenic
CATCAGCACCAGAACCAACA+AGG 0.625991 tig0035206:-3678 None:intergenic
GCTGGATTCTATGATACTTG+CGG 0.628488 tig0035206:+1581 Msa1454480:CDS
AAAGAGTTGCACCGTCAAGA+CGG 0.637047 tig0035206:+2422 Msa1454480:CDS
AAAGTGCAGGTGGAGACTCG+TGG 0.644656 tig0035206:+3365 Msa1454480:intron
ATGTATTGCTGATAACGGGA+AGG 0.646619 tig0035206:+4714 Msa1454480:CDS
ATAATGATGACACTCATGCA+CGG 0.647092 tig0035206:+3626 Msa1454480:CDS
TATTGCTGATAACGGGAAGG+AGG 0.649083 tig0035206:+4717 Msa1454480:CDS
GCTTGGTTTATGTGAAGCAG+CGG 0.649754 tig0035206:+5735 Msa1454480:CDS
AAGCAGCGGTTCTTCCCAAG+CGG 0.664513 tig0035206:+5749 Msa1454480:CDS
CAGTTGGCTAGGGCTAGATG+AGG 0.680335 tig0035206:+4636 Msa1454480:intron
GCCAACCTTGATCAACCTAG+TGG 0.703456 tig0035206:+4898 Msa1454480:CDS
AGTTTGGTTCTAGAATTGCG+AGG 0.738420 tig0035206:+5866 Msa1454480:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + tig0035206:6083-6102 Msa1454480:intron 0.0%
!! ATATATATATATATATATAT+GGG + tig0035206:6084-6103 Msa1454480:intron 0.0%
!! TATATATATATATATATATA+GGG - tig0035206:6083-6102 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - tig0035206:6084-6103 None:intergenic 0.0%
!! AAAATTCTAATAATTGAATT+TGG + tig0035206:1335-1354 Msa1454480:intron 10.0%
!! AAATAAAATTCAATATCATA+TGG - tig0035206:2611-2630 None:intergenic 10.0%
!!! ATATTGAATTTTATTTTTTG+TGG + tig0035206:2615-2634 Msa1454480:intron 10.0%
!!! ATTTCTATTATATGTTTTGT+AGG + tig0035206:1358-1377 Msa1454480:intron 15.0%
!!! TTTCTATTATATGTTTTGTA+GGG + tig0035206:1359-1378 Msa1454480:intron 15.0%
!! CAAAAAAGATATAAAGTAAA+TGG - tig0035206:2456-2475 None:intergenic 15.0%
!!! ACTATTTTCAATTTGAAATT+AGG - tig0035206:2792-2811 None:intergenic 15.0%
!!! CACATATTCTAAAATTTAAT+TGG - tig0035206:3954-3973 None:intergenic 15.0%
!! AAATGATGGTAAAAATATTT+AGG - tig0035206:4177-4196 None:intergenic 15.0%
!! TAATTGAGAAAATAAAATGA+TGG - tig0035206:4191-4210 None:intergenic 15.0%
!!! TTTTTATATATGAATTGGAT+TGG + tig0035206:6052-6071 Msa1454480:three_prime_UTR 15.0%
!! ATATATATATATATTATGCC+TGG + tig0035206:6448-6467 Msa1454480:intron 15.0%
!! AGAGATTGTCAAAAATTTAA+GGG - tig0035206:398-417 None:intergenic 20.0%
!!! TATGTTGCTAAATGTTTTAA+AGG + tig0035206:467-486 Msa1454480:CDS 20.0%
!! TCTTATTAACATCATACAAA+CGG - tig0035206:620-639 None:intergenic 20.0%
!!! TAATAAGATGTTTTCAACTT+TGG + tig0035206:632-651 Msa1454480:intron 20.0%
!!! AATAAGATGTTTTCAACTTT+GGG + tig0035206:633-652 Msa1454480:intron 20.0%
!! TCTTGAAATTTCAAAAAACA+AGG + tig0035206:1122-1141 Msa1454480:intron 20.0%
!! TTTAGTTACAATTTGCATAT+GGG - tig0035206:1280-1299 None:intergenic 20.0%
!! ATTTAGTTACAATTTGCATA+TGG - tig0035206:1281-1300 None:intergenic 20.0%
!! ATATACCATTTGTTCTTTAA+TGG + tig0035206:1386-1405 Msa1454480:intron 20.0%
!! TATACCATTTGTTCTTTAAT+GGG + tig0035206:1387-1406 Msa1454480:intron 20.0%
!! ATATAAAAGAAATCTACTGA+AGG - tig0035206:1468-1487 None:intergenic 20.0%
!! AATTCAAACTGCAATTAATT+AGG + tig0035206:1772-1791 Msa1454480:intron 20.0%
!! TTCTTCTAAATAAAGATTCA+AGG - tig0035206:2064-2083 None:intergenic 20.0%
!! ATTCATATGATTTAATCCAA+TGG - tig0035206:2185-2204 None:intergenic 20.0%
!! ATTGGATTAAATCATATGAA+TGG + tig0035206:2184-2203 Msa1454480:intron 20.0%
!! AAAGTCCAATTAAATGTTTA+AGG - tig0035206:2506-2525 None:intergenic 20.0%
!!! CATATATTTTTCATTGTTAG+AGG + tig0035206:2672-2691 Msa1454480:intron 20.0%
!!! TCAAGACATTTTAAAACAAT+AGG - tig0035206:2906-2925 None:intergenic 20.0%
!! TTTAATGGAATCCTAATTTA+GGG + tig0035206:4252-4271 Msa1454480:intron 20.0%
!! TATGAACAACAAAGTTAATA+GGG + tig0035206:4392-4411 Msa1454480:intron 20.0%
!!! ATTTTCTTTTAAAGGACTAA+CGG + tig0035206:4597-4616 Msa1454480:intron 20.0%
!! ACTATGAGATTAACAAATTA+GGG - tig0035206:4777-4796 None:intergenic 20.0%
!! AACTATGAGATTAACAAATT+AGG - tig0035206:4778-4797 None:intergenic 20.0%
!!! TTTGATTTGTTTTTCTCTTT+AGG + tig0035206:4810-4829 Msa1454480:intron 20.0%
!!! TGATAAAAAGATTTTAAGAG+AGG + tig0035206:4927-4946 Msa1454480:CDS 20.0%
!! AGATGTTAAGTTATTCAAAA+AGG - tig0035206:5066-5085 None:intergenic 20.0%
!!! AATTTTGAAGTGTAAAGTTT+TGG - tig0035206:5793-5812 None:intergenic 20.0%
!!! ATTTGTAGGAAATCAAATTT+TGG + tig0035206:5955-5974 Msa1454480:CDS 20.0%
!! AAGTTAATAAATACACCTTA+AGG + tig0035206:6199-6218 Msa1454480:intron 20.0%
! AATTGAACATCTTAGTTACT+GGG + tig0035206:15-34 Msa1454480:CDS 25.0%
! ATATACAAACTCAACATTGA+AGG + tig0035206:123-142 Msa1454480:intron 25.0%
! GAACTGTGAATTAATACTAA+AGG - tig0035206:367-386 None:intergenic 25.0%
! CAGAGATTGTCAAAAATTTA+AGG - tig0035206:399-418 None:intergenic 25.0%
! CTTATTAACATCATACAAAC+GGG - tig0035206:619-638 None:intergenic 25.0%
!! ATAAGATGTTTTCAACTTTG+GGG + tig0035206:634-653 Msa1454480:intron 25.0%
!!! CAAAACTTTAGGAAGTTTTT+CGG - tig0035206:1154-1173 None:intergenic 25.0%
! ATCTCTAGTAACAAAACTTT+AGG - tig0035206:1165-1184 None:intergenic 25.0%
! TAATCCCATTAAAGAACAAA+TGG - tig0035206:1394-1413 None:intergenic 25.0%
! AATGTCGTTAAAGAATCTAA+AGG - tig0035206:1417-1436 None:intergenic 25.0%
! TTATATTTGTCATGACTCTT+TGG + tig0035206:1482-1501 Msa1454480:intron 25.0%
! AGAATAATCAAGATAGAAGA+AGG - tig0035206:1664-1683 None:intergenic 25.0%
! TATGATAGTTGCAGATTTAT+AGG + tig0035206:1821-1840 Msa1454480:intron 25.0%
! ATGATAGTTGCAGATTTATA+GGG + tig0035206:1822-1841 Msa1454480:intron 25.0%
! TTTAGAAGAATGAGATAAGA+AGG + tig0035206:2074-2093 Msa1454480:intron 25.0%
! TTCATCTGTCAATTAAAAAG+AGG - tig0035206:2323-2342 None:intergenic 25.0%
! CCAATTAAATGTTTAAGGAA+AGG - tig0035206:2501-2520 None:intergenic 25.0%
! CCTTTCCTTAAACATTTAAT+TGG + tig0035206:2498-2517 Msa1454480:intron 25.0%
!!! TTGCTGTTTGTATAATTTCA+TGG + tig0035206:2987-3006 Msa1454480:intron 25.0%
! AATTTCATGGAAGAATATAC+TGG + tig0035206:3000-3019 Msa1454480:intron 25.0%
! ATAAAGCTATTCCAATGTTA+AGG - tig0035206:3564-3583 None:intergenic 25.0%
!! TTAACATTGGAATAGCTTTA+TGG + tig0035206:3563-3582 Msa1454480:CDS 25.0%
! TTAAAGCAAAGAAGAAAGAA+AGG - tig0035206:3925-3944 None:intergenic 25.0%
! GTTTAATGGAATCCTAATTT+AGG + tig0035206:4251-4270 Msa1454480:intron 25.0%
!! TAGAAACTAAATTGATAGCA+AGG + tig0035206:4335-4354 Msa1454480:intron 25.0%
!! AGAAACTAAATTGATAGCAA+GGG + tig0035206:4336-4355 Msa1454480:intron 25.0%
! CTATGAACAACAAAGTTAAT+AGG + tig0035206:4391-4410 Msa1454480:intron 25.0%
! TCAATCAAAAACTTTAAGTC+AGG - tig0035206:4443-4462 None:intergenic 25.0%
!!! ACTTAAAGTTTTTGATTGAC+AGG + tig0035206:4444-4463 Msa1454480:intron 25.0%
!! ACATGTGCATTTTCTTTTAA+AGG + tig0035206:4589-4608 Msa1454480:intron 25.0%
! TATAATATGCCTTAATCAGT+TGG + tig0035206:4620-4639 Msa1454480:intron 25.0%
! AGAATTTGGAAGAGAAATTT+AGG + tig0035206:4679-4698 Msa1454480:CDS 25.0%
! GAATTTGGAAGAGAAATTTA+GGG + tig0035206:4680-4699 Msa1454480:CDS 25.0%
!! AAACTAGTGATCCAAATTTT+TGG + tig0035206:5101-5120 Msa1454480:intron 25.0%
! ACGAGTTATGAATGAATATA+AGG + tig0035206:5143-5162 Msa1454480:intron 25.0%
!! TCAGAAAGATCTCTATTTTA+TGG + tig0035206:5221-5240 Msa1454480:intron 25.0%
! TCAGTTTATTTAATTGTCTG+TGG + tig0035206:5260-5279 Msa1454480:intron 25.0%
!!! TTCAAGTTATTTTCAAGAAC+TGG - tig0035206:5290-5309 None:intergenic 25.0%
!!! AAACAAATATGCGTTGATTT+TGG + tig0035206:5419-5438 Msa1454480:intron 25.0%
! CATCTATAAAATATCGCAAA+TGG - tig0035206:5604-5623 None:intergenic 25.0%
!! ATGGTCAATATATTTTCTGA+AGG + tig0035206:5702-5721 Msa1454480:intron 25.0%
!!! TTGATTTGTCTTTGATGTAT+TGG + tig0035206:5840-5859 Msa1454480:intron 25.0%
!!! GTTGATTCTTTATTTTCTCT+GGG + tig0035206:5977-5996 Msa1454480:exon 25.0%
GAATTGAACATCTTAGTTAC+TGG + tig0035206:14-33 Msa1454480:CDS 30.0%
TGCATACTATATATTCCACA+TGG - tig0035206:49-68 None:intergenic 30.0%
ATTGAAGGAACTTATCAAGT+GGG + tig0035206:138-157 Msa1454480:intron 30.0%
GGGAATGACAATTATGTATT+TGG - tig0035206:331-350 None:intergenic 30.0%
GTCATTGTATACTATCTATC+AGG + tig0035206:509-528 Msa1454480:CDS 30.0%
GTAAGCTACTTAGTTGAAAT+TGG + tig0035206:531-550 Msa1454480:intron 30.0%
!!! TGTATGTATACCTCCTTTTT+TGG + tig0035206:565-584 Msa1454480:intron 30.0%
! TCAACCAAATATTTCAAGTC+TGG + tig0035206:1205-1224 Msa1454480:intron 30.0%
TGTACCAGACTTGAAATATT+TGG - tig0035206:1212-1231 None:intergenic 30.0%
ATATGTCAAACACAAAAGGT+TGG - tig0035206:1311-1330 None:intergenic 30.0%
CCAAATATGTCAAACACAAA+AGG - tig0035206:1315-1334 None:intergenic 30.0%
! CCTTTTGTGTTTGACATATT+TGG + tig0035206:1312-1331 Msa1454480:intron 30.0%
AAATCTACTGAAGGAAAACA+AGG - tig0035206:1459-1478 None:intergenic 30.0%
TTTGCAAACATTAAACCTGT+TGG - tig0035206:1722-1741 None:intergenic 30.0%
! TGCATCTGTAACTGTTATTT+AGG + tig0035206:1747-1766 Msa1454480:intron 30.0%
TGTCAAACTCAAAGAAGTTT+AGG - tig0035206:1925-1944 None:intergenic 30.0%
! GCTTAAGGTTCTAATATAGT+TGG - tig0035206:1948-1967 None:intergenic 30.0%
ATATTAGAACCTTAAGCTGT+TGG + tig0035206:1951-1970 Msa1454480:intron 30.0%
TATTAGAACCTTAAGCTGTT+GGG + tig0035206:1952-1971 Msa1454480:intron 30.0%
TATGTAACAAGTTCCTTGTT+TGG + tig0035206:2212-2231 Msa1454480:intron 30.0%
AATTCAGCAGGAAAAGTTTA+TGG - tig0035206:2644-2663 None:intergenic 30.0%
! TTCTTGTATGATTGATGACA+TGG + tig0035206:2721-2740 Msa1454480:intron 30.0%
AAGTGAATAAATGTGTGAGT+AGG + tig0035206:2853-2872 Msa1454480:intron 30.0%
TGGCATCAACATGAAATTTA+TGG + tig0035206:3020-3039 Msa1454480:intron 30.0%
ATAGAGATCTTGACTAAGAT+CGG + tig0035206:3095-3114 Msa1454480:intron 30.0%
ATAGATATCTTGACTTAGAC+TGG - tig0035206:3259-3278 None:intergenic 30.0%
TCTTGACAACATTGTTCTAT+TGG + tig0035206:3278-3297 Msa1454480:intron 30.0%
! GTCGATATCTTTTATAGCAT+CGG + tig0035206:3312-3331 Msa1454480:intron 30.0%
GTGTTTGAAAACTTAGCTAT+AGG - tig0035206:3498-3517 None:intergenic 30.0%
CCAATCATCAAATAATGTCA+AGG - tig0035206:3520-3539 None:intergenic 30.0%
! CCTTGACATTATTTGATGAT+TGG + tig0035206:3517-3536 Msa1454480:intron 30.0%
TTAAATACAAGTCCAATGCA+AGG + tig0035206:3650-3669 Msa1454480:CDS 30.0%
GCATACAACTTGAAAATTAC+AGG - tig0035206:3886-3905 None:intergenic 30.0%
TTTCTTCTTTGCTTTAACTG+TGG + tig0035206:3928-3947 Msa1454480:intron 30.0%
!! TGGCTTTAATAAATTACCTC+AGG + tig0035206:4061-4080 Msa1454480:intron 30.0%
TGAATAACATATTAGACCTG+AGG - tig0035206:4080-4099 None:intergenic 30.0%
GATTTGAGGAATGAGTTTAA+TGG + tig0035206:4237-4256 Msa1454480:intron 30.0%
GTCAAATTAGTCCCTAAATT+AGG - tig0035206:4266-4285 None:intergenic 30.0%
!!! TTGATAGCAAGGGTATTTTA+AGG + tig0035206:4346-4365 Msa1454480:intron 30.0%
! TTGTTGTTCATAGATACAAG+TGG - tig0035206:4384-4403 None:intergenic 30.0%
!! AAAGTTTTTGATTGACAGGT+TGG + tig0035206:4448-4467 Msa1454480:intron 30.0%
AAGACTCATTGTATCTTATG+TGG + tig0035206:4471-4490 Msa1454480:intron 30.0%
CAAAATTCTTTAAGTCACCT+TGG + tig0035206:4530-4549 Msa1454480:intron 30.0%
GTACTATTAAGTTAACACCA+AGG - tig0035206:4550-4569 None:intergenic 30.0%
GATAGATGTATTGCTGATAA+CGG + tig0035206:4709-4728 Msa1454480:CDS 30.0%
ATAGATGTATTGCTGATAAC+GGG + tig0035206:4710-4729 Msa1454480:CDS 30.0%
! TTTTACTCAACATTCCATTG+TGG + tig0035206:4869-4888 Msa1454480:CDS 30.0%
TTTACTCAACATTCCATTGT+GGG + tig0035206:4870-4889 Msa1454480:CDS 30.0%
TGAGCATGTTACCAAAAATT+TGG - tig0035206:5115-5134 None:intergenic 30.0%
! GAAAGATCTCTATTTTATGG+CGG + tig0035206:5224-5243 Msa1454480:intron 30.0%
! AAAGATCTCTATTTTATGGC+GGG + tig0035206:5225-5244 Msa1454480:intron 30.0%
ACATGAACTTCTACTTCAAA+GGG - tig0035206:5336-5355 None:intergenic 30.0%
AACATGAACTTCTACTTCAA+AGG - tig0035206:5337-5356 None:intergenic 30.0%
!!! TTCCTTTATTTTTGACGAAC+CGG - tig0035206:5400-5419 None:intergenic 30.0%
!!! GACAGAAAAGGGTTTTATTT+TGG - tig0035206:5640-5659 None:intergenic 30.0%
TGAAGATCCAACATAGAAAA+TGG + tig0035206:5660-5679 Msa1454480:intron 30.0%
! TGACCATGAGATTTAAGTTT+GGG - tig0035206:5689-5708 None:intergenic 30.0%
! TTGACCATGAGATTTAAGTT+TGG - tig0035206:5690-5709 None:intergenic 30.0%
! TTTGATGTATTGGTGTAGTT+TGG + tig0035206:5850-5869 Msa1454480:intron 30.0%
! GAATCAAATCGGAAGAATTT+TGG + tig0035206:5889-5908 Msa1454480:CDS 30.0%
!!! GGTTGATTCTTTATTTTCTC+TGG + tig0035206:5976-5995 Msa1454480:exon 30.0%
TTATAGCAACATACACCTTA+AGG - tig0035206:6217-6236 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG + tig0035206:6240-6259 Msa1454480:intron 30.0%
! ACTCCTTCTAAAAAGTAAGT+GGG - tig0035206:6305-6324 None:intergenic 30.0%
! TACTCCTTCTAAAAAGTAAG+TGG - tig0035206:6306-6325 None:intergenic 30.0%
GCAAGTGAATAACTAAAAAG+TGG + tig0035206:6331-6350 Msa1454480:intron 30.0%
TGGAATATATAGTATGCACG+TGG + tig0035206:51-70 Msa1454480:CDS 35.0%
! TTCGAATTCAAACGGATTTC+TGG + tig0035206:78-97 Msa1454480:CDS 35.0%
!! AATTCAAACGGATTTCTGGT+TGG + tig0035206:82-101 Msa1454480:intron 35.0%
CATTGAAGGAACTTATCAAG+TGG + tig0035206:137-156 Msa1454480:intron 35.0%
ATTGTCATTCCCATACATTC+TGG + tig0035206:339-358 Msa1454480:intron 35.0%
!! CTAAAGGTACCAGAATGTAT+GGG - tig0035206:351-370 None:intergenic 35.0%
!! ACTAAAGGTACCAGAATGTA+TGG - tig0035206:352-371 None:intergenic 35.0%
AATCTCTGTCTTGATTAAGC+AGG + tig0035206:411-430 Msa1454480:intron 35.0%
TTGATGTTAGCCAAAAAAGG+AGG - tig0035206:578-597 None:intergenic 35.0%
CCTTTGATGTTAGCCAAAAA+AGG - tig0035206:581-600 None:intergenic 35.0%
!!! CCTTTTTTGGCTAACATCAA+AGG + tig0035206:578-597 Msa1454480:intron 35.0%
TTGTTGTCGAGTGACTATAA+AGG - tig0035206:841-860 None:intergenic 35.0%
ATGCAAGTGAATGATAGAGA+TGG + tig0035206:935-954 Msa1454480:intron 35.0%
ATGGCTAAAAGACAAGACAA+GGG + tig0035206:954-973 Msa1454480:intron 35.0%
CTCTTTGGATTTGATTGCAT+AGG + tig0035206:1497-1516 Msa1454480:intron 35.0%
! TTGCAATTCTTTTCTCTGGT+GGG + tig0035206:1559-1578 Msa1454480:CDS 35.0%
GAAGGTAACTTGAGCTTATA+GGG - tig0035206:1646-1665 None:intergenic 35.0%
AGAAGGTAACTTGAGCTTAT+AGG - tig0035206:1647-1666 None:intergenic 35.0%
GTATATGATAATTCTCCCAG+AGG + tig0035206:1881-1900 Msa1454480:intron 35.0%
! ATCCAATGGCTTAACCTTTT+GGG - tig0035206:2171-2190 None:intergenic 35.0%
! AATCCAATGGCTTAACCTTT+TGG - tig0035206:2172-2191 None:intergenic 35.0%
TTGAATCACCTAAAGTAGAC+TGG + tig0035206:2237-2256 Msa1454480:intron 35.0%
TAGAGATTCGACTCATCTAA+AGG - tig0035206:2299-2318 None:intergenic 35.0%
! CTACTTACTGTAAGCTTTGA+TGG + tig0035206:2349-2368 Msa1454480:CDS 35.0%
TATGCATCTTAGAATTCAGC+AGG - tig0035206:2656-2675 None:intergenic 35.0%
!! ATTGTTAGAGGCATTGAAAG+TGG + tig0035206:2684-2703 Msa1454480:intron 35.0%
TGAATAAATGTGTGAGTAGG+CGG + tig0035206:2856-2875 Msa1454480:intron 35.0%
TAGAGATCTTGACTAAGATC+GGG + tig0035206:3096-3115 Msa1454480:intron 35.0%
TACTACCCAAGTAATTACGA+AGG - tig0035206:3187-3206 None:intergenic 35.0%
AGGATTGATTAGTACCATGT+AGG - tig0035206:3463-3482 None:intergenic 35.0%
!! TGGTTTGCACATATCTTTTC+AGG + tig0035206:3537-3556 Msa1454480:intron 35.0%
!! TCTTTTCAGGACCTTAACAT+TGG + tig0035206:3550-3569 Msa1454480:intron 35.0%
ATAATGATGACACTCATGCA+CGG + tig0035206:3626-3645 Msa1454480:CDS 35.0%
!!! CATAGAACAAGTTTTAGACG+AGG + tig0035206:3724-3743 Msa1454480:CDS 35.0%
! TTTCCTTTTGTCCATTAGCT+TGG + tig0035206:3858-3877 Msa1454480:intron 35.0%
!! TTCCTTTTGTCCATTAGCTT+GGG + tig0035206:3859-3878 Msa1454480:intron 35.0%
ACCATACAGCTTACAATCTA+TGG + tig0035206:4041-4060 Msa1454480:intron 35.0%
AGTAATGATGTGTGTAGCTT+TGG - tig0035206:4149-4168 None:intergenic 35.0%
AAATGTCAGTCTTCCTTTGT+TGG + tig0035206:4215-4234 Msa1454480:intron 35.0%
TCATTCCTCAAATCCAACAA+AGG - tig0035206:4231-4250 None:intergenic 35.0%
! AGATACAAGTGGTGTCAATT+GGG - tig0035206:4373-4392 None:intergenic 35.0%
! TAGATACAAGTGGTGTCAAT+TGG - tig0035206:4374-4393 None:intergenic 35.0%
AACTCGACATGCAAAGAATT+TGG + tig0035206:4665-4684 Msa1454480:CDS 35.0%
TTAGGCTAGATTTCCATTCT+TGG + tig0035206:4828-4847 Msa1454480:intron 35.0%
TAGATTTCCATTCTTGGATG+AGG + tig0035206:4834-4853 Msa1454480:CDS 35.0%
ATAACATCCTCATCCAAGAA+TGG - tig0035206:4844-4863 None:intergenic 35.0%
TCTTGGATGAGGATGTTATA+AGG + tig0035206:4845-4864 Msa1454480:CDS 35.0%
CTTGGATGAGGATGTTATAA+GGG + tig0035206:4846-4865 Msa1454480:CDS 35.0%
CATCTTGTCTGACCATTTAT+TGG + tig0035206:5015-5034 Msa1454480:intron 35.0%
CATGAACTTCTACTTCAAAG+GGG - tig0035206:5335-5354 None:intergenic 35.0%
AGATCACTGTTTCACTCATT+AGG + tig0035206:5480-5499 Msa1454480:intron 35.0%
TTTCACTCATTAGGATGAAG+AGG + tig0035206:5489-5508 Msa1454480:intron 35.0%
AAAATATCGCAAATGGTCCA+TGG - tig0035206:5597-5616 None:intergenic 35.0%
TTGGATCTTCAGACAGAAAA+GGG - tig0035206:5651-5670 None:intergenic 35.0%
ACTCCCAAACTTAAATCTCA+TGG + tig0035206:5683-5702 Msa1454480:intron 35.0%
!! TTTATTTTCTCTGGGCATGT+GGG + tig0035206:5985-6004 Msa1454480:three_prime_UTR 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + tig0035206:6151-6170 Msa1454480:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - tig0035206:6388-6407 None:intergenic 35.0%
CACCTTCTAACAAAAACAAG+TGG + tig0035206:6239-6258 Msa1454480:intron 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - tig0035206:6244-6263 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG + tig0035206:6263-6282 Msa1454480:intron 35.0%
GTGTTCTAGCAAATCCTATA+GGG + tig0035206:6264-6283 Msa1454480:intron 35.0%
TGTTCTAGCAAATCCTATAG+GGG + tig0035206:6265-6284 Msa1454480:intron 35.0%
!!! ACACCCACTTACTTTTTAGA+AGG + tig0035206:6299-6318 Msa1454480:intron 35.0%
AAGTGGTTAAATACACCCTA+AGG + tig0035206:6348-6367 Msa1454480:intron 35.0%
TTTAGCAAAGCTACACCTTA+GGG - tig0035206:6366-6385 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG - tig0035206:6367-6386 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG + tig0035206:6388-6407 Msa1454480:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - tig0035206:6151-6170 None:intergenic 35.0%
GTGGATGCTTCGAATTCAAA+CGG + tig0035206:70-89 Msa1454480:CDS 40.0%
! ATCCTGCCCTAAGTTTTCTA+GGG + tig0035206:200-219 Msa1454480:CDS 40.0%
TAGTAATAACCTGCTTCGCA+TGG - tig0035206:264-283 None:intergenic 40.0%
TGAAGAAGCTAAATCGACAC+TGG + tig0035206:749-768 Msa1454480:intron 40.0%
GAAGAAGCTAAATCGACACT+GGG + tig0035206:750-769 Msa1454480:intron 40.0%
AAGAAGCTAAATCGACACTG+GGG + tig0035206:751-770 Msa1454480:intron 40.0%
CAACTTCAACTGTTGCATCA+TGG + tig0035206:858-877 Msa1454480:intron 40.0%
GATGGCTAAAAGACAAGACA+AGG + tig0035206:953-972 Msa1454480:intron 40.0%
TGGCTAAAAGACAAGACAAG+GGG + tig0035206:955-974 Msa1454480:intron 40.0%
TACTGAAGGAAAACAAGGTC+AGG - tig0035206:1454-1473 None:intergenic 40.0%
ATTGCATAGGCTGTGATATC+TGG + tig0035206:1510-1529 Msa1454480:intron 40.0%
CCAGAGAAAAGAATTGCAAC+AGG - tig0035206:1558-1577 None:intergenic 40.0%
! CCTGTTGCAATTCTTTTCTC+TGG + tig0035206:1555-1574 Msa1454480:CDS 40.0%
! GTTGCAATTCTTTTCTCTGG+TGG + tig0035206:1558-1577 Msa1454480:CDS 40.0%
GCTGGATTCTATGATACTTG+CGG + tig0035206:1581-1600 Msa1454480:CDS 40.0%
TATGATACTTGCGGCATTAC+TGG + tig0035206:1590-1609 Msa1454480:CDS 40.0%
!! GGAATGGTTGATTTTCGACA+TGG - tig0035206:2146-2165 None:intergenic 40.0%
ATCAACCATTCCATCCCAAA+AGG + tig0035206:2154-2173 Msa1454480:intron 40.0%
!!! CTTAACCTTTTGGGATGGAA+TGG - tig0035206:2162-2181 None:intergenic 40.0%
!! AATGGCTTAACCTTTTGGGA+TGG - tig0035206:2167-2186 None:intergenic 40.0%
ATCCCAAAAGGTTAAGCCAT+TGG + tig0035206:2166-2185 Msa1454480:intron 40.0%
AGGTGATTCAACACCAAACA+AGG - tig0035206:2228-2247 None:intergenic 40.0%
TCCTGATAGAAAATCTGCCA+AGG + tig0035206:2381-2400 Msa1454480:CDS 40.0%
ATAGAAAATCTGCCAAGGCA+GGG + tig0035206:2386-2405 Msa1454480:CDS 40.0%
GAATAAATGTGTGAGTAGGC+GGG + tig0035206:2857-2876 Msa1454480:intron 40.0%
!! GTTTGCAAAGCACTGAATGA+AGG - tig0035206:2940-2959 None:intergenic 40.0%
GTAGCAAGATCGTAACATGT+AGG + tig0035206:3124-3143 Msa1454480:intron 40.0%
TAGCAAGACTGCAAAACGTA+AGG - tig0035206:3151-3170 None:intergenic 40.0%
CCAAGTAATTACGAAGGATC+GGG - tig0035206:3181-3200 None:intergenic 40.0%
CCCAAGTAATTACGAAGGAT+CGG - tig0035206:3182-3201 None:intergenic 40.0%
CCGATCCTTCGTAATTACTT+GGG + tig0035206:3179-3198 Msa1454480:intron 40.0%
! AAAGCATCTGTTGAAAGTGC+AGG + tig0035206:3352-3371 Msa1454480:intron 40.0%
!! TGATGCTGACTTGTCAGATT+TGG + tig0035206:3392-3411 Msa1454480:CDS 40.0%
AAATCCTTCCAACACCTACA+TGG + tig0035206:3446-3465 Msa1454480:CDS 40.0%
GATTAGTACCATGTAGGTGT+TGG - tig0035206:3457-3476 None:intergenic 40.0%
! GCTATAGGCTTTTCAATCTG+AGG - tig0035206:3483-3502 None:intergenic 40.0%
AACAAGGAGAATCCTTGCAT+TGG - tig0035206:3665-3684 None:intergenic 40.0%
AATGCAAGGATTCTCCTTGT+TGG + tig0035206:3664-3683 Msa1454480:CDS 40.0%
!! ATGAACAGTGTGCTGGTTAT+GGG + tig0035206:3698-3717 Msa1454480:CDS 40.0%
!!! GAACAAGTTTTAGACGAGGA+AGG + tig0035206:3728-3747 Msa1454480:CDS 40.0%
!! CGAGGAAGGTATTATCACTA+TGG + tig0035206:3742-3761 Msa1454480:intron 40.0%
AATTACAGGACCCAAGCTAA+TGG - tig0035206:3872-3891 None:intergenic 40.0%
GCCATAGATTGTAAGCTGTA+TGG - tig0035206:4045-4064 None:intergenic 40.0%
!! TAGCTTTGGACGAGAAATCA+GGG - tig0035206:4135-4154 None:intergenic 40.0%
GTCTTCCTTTGTTGGATTTG+AGG + tig0035206:4223-4242 Msa1454480:intron 40.0%
ACGAGAGTTTCCATGATTGA+GGG + tig0035206:4284-4303 Msa1454480:intron 40.0%
TCAATTAAGCCCCTCAATCA+TGG - tig0035206:4297-4316 None:intergenic 40.0%
TATGCCTTAATCAGTTGGCT+AGG + tig0035206:4625-4644 Msa1454480:intron 40.0%
ATGCCTTAATCAGTTGGCTA+GGG + tig0035206:4626-4645 Msa1454480:intron 40.0%
!! ATGTATTGCTGATAACGGGA+AGG + tig0035206:4714-4733 Msa1454480:CDS 40.0%
! TTTTTATCACCGATGCCACT+AGG - tig0035206:4916-4935 None:intergenic 40.0%
! AGGTATTGTTGTTGACTGAG+TGG + tig0035206:4947-4966 Msa1454480:intron 40.0%
TTGTCGAGTCAGCCAATAAA+TGG - tig0035206:5030-5049 None:intergenic 40.0%
CACAAGTATGAGTTCAGTTC+AGG - tig0035206:5189-5208 None:intergenic 40.0%
!! TGCCGGTTCGTCAAAAATAA+AGG + tig0035206:5395-5414 Msa1454480:intron 40.0%
TGATCTGATTGGTACGAGTT+TGG - tig0035206:5466-5485 None:intergenic 40.0%
GAGTGAAACAGTGATCTGAT+TGG - tig0035206:5477-5496 None:intergenic 40.0%
CATGGTACATCGGTATTTGT+CGG - tig0035206:5532-5551 None:intergenic 40.0%
AACAACGACTCATGGTACAT+CGG - tig0035206:5542-5561 None:intergenic 40.0%
!!! TTCTGGTGATTTTCAAGTGC+CGG + tig0035206:5567-5586 Msa1454480:intron 40.0%
GTTGGATCTTCAGACAGAAA+AGG - tig0035206:5652-5671 None:intergenic 40.0%
! TGGGAGTCCATTTTCTATGT+TGG - tig0035206:5670-5689 None:intergenic 40.0%
!! AGTTTGGTTCTAGAATTGCG+AGG + tig0035206:5866-5885 Msa1454480:intron 40.0%
!! GTTTGGTTCTAGAATTGCGA+GGG + tig0035206:5867-5886 Msa1454480:intron 40.0%
GAATTGCGAGGGAATCAAAT+CGG + tig0035206:5878-5897 Msa1454480:CDS 40.0%
AAGTAATCGAGCAGCAAATC+AGG + tig0035206:5912-5931 Msa1454480:CDS 40.0%
!!! CTTTATTTTCTCTGGGCATG+TGG + tig0035206:5984-6003 Msa1454480:three_prime_UTR 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + tig0035206:6150-6169 Msa1454480:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - tig0035206:6387-6406 None:intergenic 40.0%
! AAATCCTATAGGGGTTTGCT+AGG + tig0035206:6274-6293 Msa1454480:intron 40.0%
CACTCCCACATAAAAACTAG+TGG + tig0035206:6387-6406 Msa1454480:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - tig0035206:6150-6169 None:intergenic 40.0%
! CATCCTGCCCTAAGTTTTCT+AGG + tig0035206:199-218 Msa1454480:CDS 45.0%
! TCCTGCCCTAAGTTTTCTAG+GGG + tig0035206:201-220 Msa1454480:CDS 45.0%
GTTGCCCCCTAGAAAACTTA+GGG - tig0035206:209-228 None:intergenic 45.0%
TGTTGCCCCCTAGAAAACTT+AGG - tig0035206:210-229 None:intergenic 45.0%
AGCAACATATGAGCTCGCAT+TGG - tig0035206:456-475 None:intergenic 45.0%
CAAGTTTGAGTCGTGGAATC+AGG - tig0035206:807-826 None:intergenic 45.0%
CGAGTGACTATAAAGGTGAC+AGG - tig0035206:834-853 None:intergenic 45.0%
GGCTAAAAGACAAGACAAGG+GGG + tig0035206:956-975 Msa1454480:intron 45.0%
!! AATTCTTTTCTCTGGTGGGC+TGG + tig0035206:1563-1582 Msa1454480:CDS 45.0%
!! TATAGGGAGCACTCACAACT+GGG - tig0035206:1630-1649 None:intergenic 45.0%
!! TTATAGGGAGCACTCACAAC+TGG - tig0035206:1631-1650 None:intergenic 45.0%
GTCATGAACTAACTGCCAAC+AGG + tig0035206:1704-1723 Msa1454480:intron 45.0%
GAAACTGTGTGTTCTCCTCT+GGG - tig0035206:1899-1918 None:intergenic 45.0%
TGAAACTGTGTGTTCTCCTC+TGG - tig0035206:1900-1919 None:intergenic 45.0%
CAAAGAGCTCTTGTGTAAGG+GGG - tig0035206:2010-2029 None:intergenic 45.0%
CCAAAGAGCTCTTGTGTAAG+GGG - tig0035206:2011-2030 None:intergenic 45.0%
CCCAAAGAGCTCTTGTGTAA+GGG - tig0035206:2012-2031 None:intergenic 45.0%
CCCTTACACAAGAGCTCTTT+GGG + tig0035206:2009-2028 Msa1454480:intron 45.0%
GGATCAAATTCTAGACCACG+TGG + tig0035206:2095-2114 Msa1454480:intron 45.0%
GAACTCGACCAGTCTACTTT+AGG - tig0035206:2248-2267 None:intergenic 45.0%
! GCCTTGGCAGATTTTCTATC+AGG - tig0035206:2385-2404 None:intergenic 45.0%
GATAGAAAATCTGCCAAGGC+AGG + tig0035206:2385-2404 Msa1454480:CDS 45.0%
TAGTTCTTTCAACCCTGCCT+TGG - tig0035206:2401-2420 None:intergenic 45.0%
AAAGAGTTGCACCGTCAAGA+CGG + tig0035206:2422-2441 Msa1454480:CDS 45.0%
TGGATTGCATACCGTCTTGA+CGG - tig0035206:2436-2455 None:intergenic 45.0%
TCTTGACTAAGATCGGGAGA+AGG + tig0035206:3102-3121 Msa1454480:intron 45.0%
AGTAATTACGAAGGATCGGG+AGG - tig0035206:3178-3197 None:intergenic 45.0%
CCCGATCCTTCGTAATTACT+TGG + tig0035206:3178-3197 Msa1454480:intron 45.0%
CAACATGTGAGGTCGTAACT+AGG - tig0035206:3218-3237 None:intergenic 45.0%
TAGCAAGATCGCAACATGTG+AGG - tig0035206:3229-3248 None:intergenic 45.0%
TCTTGACTTAGACTGGAAGC+AGG - tig0035206:3252-3271 None:intergenic 45.0%
!! TAGCATCGGTCATGTTCAGT+TGG + tig0035206:3326-3345 Msa1454480:intron 45.0%
!! AGTACCATGTAGGTGTTGGA+AGG - tig0035206:3453-3472 None:intergenic 45.0%
!! ATAGCTTTATGGCTCGCTTC+TGG + tig0035206:3574-3593 Msa1454480:CDS 45.0%
!! AGGATTCTCCTTGTTGGTTC+TGG + tig0035206:3670-3689 Msa1454480:CDS 45.0%
!! GATGAACAGTGTGCTGGTTA+TGG + tig0035206:3697-3716 Msa1454480:CDS 45.0%
! GACCCAAGCTAATGGACAAA+AGG - tig0035206:3864-3883 None:intergenic 45.0%
!! AGCTTTGGACGAGAAATCAG+GGG - tig0035206:4134-4153 None:intergenic 45.0%
!! GTAGCTTTGGACGAGAAATC+AGG - tig0035206:4136-4155 None:intergenic 45.0%
GACGAGAGTTTCCATGATTG+AGG + tig0035206:4283-4302 Msa1454480:intron 45.0%
CGAGAGTTTCCATGATTGAG+GGG + tig0035206:4285-4304 Msa1454480:intron 45.0%
TAGCCCTAGCCAACTGATTA+AGG - tig0035206:4632-4651 None:intergenic 45.0%
!! TATTGCTGATAACGGGAAGG+AGG + tig0035206:4717-4736 Msa1454480:CDS 45.0%
ACTCAACATTCCATTGTGGG+AGG + tig0035206:4873-4892 Msa1454480:CDS 45.0%
CTTGATCAACCTAGTGGCAT+CGG + tig0035206:4904-4923 Msa1454480:CDS 45.0%
TTCAGTTCAGGCAACATCAC+TGG - tig0035206:5177-5196 None:intergenic 45.0%
!!! TTTTATGGCGGGTTCTACTG+TGG + tig0035206:5236-5255 Msa1454480:intron 45.0%
CTTCCATGTTCTCATGAGAG+AGG + tig0035206:5357-5376 Msa1454480:intron 45.0%
TTGTCGGAAGTAGAAGTTCG+CGG - tig0035206:5516-5535 None:intergenic 45.0%
GATGTACCATGAGTCGTTGT+TGG + tig0035206:5541-5560 Msa1454480:intron 45.0%
GAAACTCCAACAACGACTCA+TGG - tig0035206:5550-5569 None:intergenic 45.0%
TGAGTCGTTGTTGGAGTTTC+TGG + tig0035206:5550-5569 Msa1454480:intron 45.0%
CTGAAGGTTGCACAATTGCT+TGG + tig0035206:5718-5737 Msa1454480:intron 45.0%
GCTTGGTTTATGTGAAGCAG+CGG + tig0035206:5735-5754 Msa1454480:CDS 45.0%
!!! AAAGTTTTGGAGTGCACACC+TGG - tig0035206:5780-5799 None:intergenic 45.0%
CAGGCAGTGTAAGGATTTGT+AGG + tig0035206:5941-5960 Msa1454480:CDS 45.0%
! GCATGTGGGACTCATCTTTT+TGG + tig0035206:5999-6018 Msa1454480:three_prime_UTR 45.0%
GTATCCTAGCAAACCCCTAT+AGG - tig0035206:6281-6300 None:intergenic 45.0%
!! TAAATTAATAAATCAATAAA+TGG - tig0035206:307-326 None:intergenic 5.0%
!!! AAATTTTTTTATATATGAAT+TGG + tig0035206:6047-6066 Msa1454480:three_prime_UTR 5.0%
!! TATATATATATATATATATG+GGG + tig0035206:6117-6136 Msa1454480:intron 5.0%
TACTGGGAAGAGCTACCATG+TGG + tig0035206:31-50 Msa1454480:CDS 50.0%
! GTCTGCAGGTTTTCAGAGCT+TGG - tig0035206:180-199 None:intergenic 50.0%
! CCTGCCCTAAGTTTTCTAGG+GGG + tig0035206:202-221 Msa1454480:CDS 50.0%
AGGCTCACAAGTTTGAGTCG+TGG - tig0035206:814-833 None:intergenic 50.0%
!! AAGACAAGGGGGTATTGCAC+AGG + tig0035206:967-986 Msa1454480:intron 50.0%
! GGGTATTGCACAGGAACGAT+GGG + tig0035206:976-995 Msa1454480:intron 50.0%
GGCATTACTGGATCAATGCC+TGG + tig0035206:1602-1621 Msa1454480:CDS 50.0%
GTGCTTCACCCAACAGCTTA+AGG - tig0035206:1963-1982 None:intergenic 50.0%
CCCCTTACACAAGAGCTCTT+TGG + tig0035206:2008-2027 Msa1454480:intron 50.0%
GCCCAAAGAGCTCTTGTGTA+AGG - tig0035206:2013-2032 None:intergenic 50.0%
TTCTAGACCACGTGGTCAAC+TGG + tig0035206:2103-2122 Msa1454480:intron 50.0%
TCTATGACCAGTTGACCACG+TGG - tig0035206:2113-2132 None:intergenic 50.0%
ACGTGGTCAACTGGTCATAG+AGG + tig0035206:2112-2131 Msa1454480:intron 50.0%
AATTACGAAGGATCGGGAGG+CGG - tig0035206:3175-3194 None:intergenic 50.0%
! GCATCTGTTGAAAGTGCAGG+TGG + tig0035206:3355-3374 Msa1454480:intron 50.0%
CATCAGCACCAGAACCAACA+AGG - tig0035206:3681-3700 None:intergenic 50.0%
GCCAACCTTGATCAACCTAG+TGG + tig0035206:4898-4917 Msa1454480:CDS 50.0%
!! GCCACTAGGTTGATCAAGGT+TGG - tig0035206:4902-4921 None:intergenic 50.0%
!! CGATGCCACTAGGTTGATCA+AGG - tig0035206:4906-4925 None:intergenic 50.0%
GGGGTGACATAGTTCATCGT+TGG - tig0035206:5316-5335 None:intergenic 50.0%
ACGCCTCTCTCATGAGAACA+TGG - tig0035206:5363-5382 None:intergenic 50.0%
!! TTTCAAGTGCCGGTACACCA+TGG + tig0035206:5577-5596 Msa1454480:intron 50.0%
GCAAATGGTCCATGGTGTAC+CGG - tig0035206:5589-5608 None:intergenic 50.0%
ACTTAGGGCAGGATGTCTGC+AGG - tig0035206:194-213 None:intergenic 55.0%
CCCCCTAGAAAACTTAGGGC+AGG - tig0035206:205-224 None:intergenic 55.0%
GAGACAGTTCCATGCGAAGC+AGG + tig0035206:252-271 Msa1454480:CDS 55.0%
!! GGGGTATTGCACAGGAACGA+TGG + tig0035206:975-994 Msa1454480:intron 55.0%
TGCACAGGAACGATGGGAAG+TGG + tig0035206:982-1001 Msa1454480:intron 55.0%
AGCACTCACAACTGGGATCC+AGG - tig0035206:1623-1642 None:intergenic 55.0%
ATTACGAAGGATCGGGAGGC+GGG - tig0035206:3174-3193 None:intergenic 55.0%
AAAGTGCAGGTGGAGACTCG+TGG + tig0035206:3365-3384 Msa1454480:intron 55.0%
GCTTTATGGCTCGCTTCTGG+TGG + tig0035206:3577-3596 Msa1454480:CDS 55.0%
!! TCGCTTCTGGTGGTGATGGA+TGG + tig0035206:3587-3606 Msa1454480:CDS 55.0%
!! CGCTTCTGGTGGTGATGGAT+GGG + tig0035206:3588-3607 Msa1454480:CDS 55.0%
!! GGTGCTGATGAACAGTGTGC+TGG + tig0035206:3691-3710 Msa1454480:CDS 55.0%
CAGTTGGCTAGGGCTAGATG+AGG + tig0035206:4636-4655 Msa1454480:intron 55.0%
AGGTTGGCAACCTCCCACAA+TGG - tig0035206:4886-4905 None:intergenic 55.0%
!! GAGAGAGGCGTTGACCTGAT+CGG + tig0035206:5372-5391 Msa1454480:intron 55.0%
AAGCAGCGGTTCTTCCCAAG+CGG + tig0035206:5749-5768 Msa1454480:CDS 55.0%
! TGGCTCGCTTCTGGTGGTGA+TGG + tig0035206:3583-3602 Msa1454480:CDS 60.0%
!! TTGACGAACCGGCACCGATC+AGG - tig0035206:5389-5408 None:intergenic 60.0%
AGCAGCGGTTCTTCCCAAGC+GGG + tig0035206:5750-5769 Msa1454480:CDS 60.0%
TCTTCCCAAGCGGGCAATCC+AGG + tig0035206:5759-5778 Msa1454480:CDS 60.0%
CACACCTGGATTGCCCGCTT+GGG - tig0035206:5766-5785 None:intergenic 60.0%
GCAGCAAATCAGGCGTCTGC+AGG + tig0035206:5922-5941 Msa1454480:CDS 60.0%
AGGCGTCTGCAGGCAGTGTA+AGG + tig0035206:5932-5951 Msa1454480:CDS 60.0%
!! GGCGTTGACCTGATCGGTGC+CGG + tig0035206:5378-5397 Msa1454480:intron 65.0%
GCACACCTGGATTGCCCGCT+TGG - tig0035206:5767-5786 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0035206 gene 4 6476 4 ID=Msa1454480;Name=Msa1454480
tig0035206 mRNA 4 6476 4 ID=Msa1454480-mRNA-1;Parent=Msa1454480;Name=Msa1454480-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.72|0.66|1|0.90|0.83|12|127|387
tig0035206 exon 4 99 4 ID=Msa1454480-mRNA-1:exon:19746;Parent=Msa1454480-mRNA-1
tig0035206 exon 198 273 198 ID=Msa1454480-mRNA-1:exon:19747;Parent=Msa1454480-mRNA-1
tig0035206 exon 433 530 433 ID=Msa1454480-mRNA-1:exon:19748;Parent=Msa1454480-mRNA-1
tig0035206 exon 1519 1633 1519 ID=Msa1454480-mRNA-1:exon:19749;Parent=Msa1454480-mRNA-1
tig0035206 exon 2338 2443 2338 ID=Msa1454480-mRNA-1:exon:19750;Parent=Msa1454480-mRNA-1
tig0035206 exon 3374 3467 3374 ID=Msa1454480-mRNA-1:exon:19751;Parent=Msa1454480-mRNA-1
tig0035206 exon 3559 3749 3559 ID=Msa1454480-mRNA-1:exon:19752;Parent=Msa1454480-mRNA-1
tig0035206 exon 4639 4738 4639 ID=Msa1454480-mRNA-1:exon:19753;Parent=Msa1454480-mRNA-1
tig0035206 exon 4832 4948 4832 ID=Msa1454480-mRNA-1:exon:19754;Parent=Msa1454480-mRNA-1
tig0035206 exon 5724 5780 5724 ID=Msa1454480-mRNA-1:exon:19755;Parent=Msa1454480-mRNA-1
tig0035206 exon 5868 6091 5868 ID=Msa1454480-mRNA-1:exon:19756;Parent=Msa1454480-mRNA-1
tig0035206 exon 6460 6476 6460 ID=Msa1454480-mRNA-1:exon:19757;Parent=Msa1454480-mRNA-1
tig0035206 CDS 4 99 4 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 198 273 198 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 433 530 433 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 1519 1633 1519 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 2338 2443 2338 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 3374 3467 3374 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 3559 3749 3559 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 4639 4738 4639 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 4832 4948 4832 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 5724 5780 5724 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 CDS 5868 5981 5868 ID=Msa1454480-mRNA-1:cds;Parent=Msa1454480-mRNA-1
tig0035206 three_prime_UTR 5982 6091 5982 ID=Msa1454480-mRNA-1:three_prime_utr;Parent=Msa1454480-mRNA-1
tig0035206 three_prime_UTR 6460 6476 6460 ID=Msa1454480-mRNA-1:three_prime_utr;Parent=Msa1454480-mRNA-1
Gene Sequence

>Msa1454480

GCTCATAATGGAATTGAACATCTTAGTTACTGGGAAGAGCTACCATGTGGAATATATAGTATGCACGTGGATGCTTCGAATTCAAACGGATTTCTGACATCCTGCCCTAAGTTTTCTAGGGGGCAACAAGATGTACATTCAGCTTCTTTAGAGACAGTTCCATGCGAAGCAGGCTCAACTCAAAATTCAATTCCAATGCGAGCTCATATGTTGCTAAATGTTTTAAAGGAATCTGTGATACGACGTACGTCATTGTATACTATCTATCAGGCTGTGATATCTGGTATCAAACAAGAGAAATTTGTTCCTGTTGCAATTCTTTTCTCTGGTGGGCTGGATTCTATGATACTTGCGGCATTACTGGATCAATGCCTGGATCCCAGTTATGAAATTGATCTACTTACTGTAAGCTTTGATGGCGAGTTAGCTCCTGATAGAAAATCTGCCAAGGCAGGGTTGAAAGAACTAAAAAGAGTTGCACCGTCAAGACGGTGGAGACTCGTGGAGATTGATGCTGACTTGTCAGATTTGGTGTCTGAGACTAGTCATGTTATGTCACTCATAAATCCTTCCAACACCTACATGGACCTTAACATTGGAATAGCTTTATGGCTCGCTTCTGGTGGTGATGGATGGGTGTCTGATGCAGATGATAATGATGACACTCATGCACGGATTAAATACAAGTCCAATGCAAGGATTCTCCTTGTTGGTTCTGGTGCTGATGAACAGTGTGCTGGTTATGGGAGACATAGAACAAGTTTTAGACGAGGAAGTTGGCTAGGGCTAGATGAGGAAATGAAACTCGACATGCAAAGAATTTGGAAGAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAACGGGAAGGAGGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGGTTTTACTCAACATTCCATTGTGGGAGGTTGCCAACCTTGATCAACCTAGTGGCATCGGTGATAAAAAGATTTTAAGAGAGGTTGCACAATTGCTTGGTTTATGTGAAGCAGCGGTTCTTCCCAAGCGGGCAATCCAGTTTGGTTCTAGAATTGCGAGGGAATCAAATCGGAAGAATTTTGGAAGTAATCGAGCAGCAAATCAGGCGTCTGCAGGCAGTGTAAGGATTTGTAGGAAATCAAATTTTGGTTGA

Protein sequence

>Msa1454480

AHNGIEHLSYWEELPCGIYSMHVDASNSNGFLTSCPKFSRGQQDVHSASLETVPCEAGSTQNSIPMRAHMLLNVLKESVIRRTSLYTIYQAVISGIKQEKFVPVAILFSGGLDSMILAALLDQCLDPSYEIDLLTVSFDGELAPDRKSAKAGLKELKRVAPSRRWRLVEIDADLSDLVSETSHVMSLINPSNTYMDLNIGIALWLASGGDGWVSDADDNDDTHARIKYKSNARILLVGSGADEQCAGYGRHRTSFRRGSWLGLDEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRVLLNIPLWEVANLDQPSGIGDKKILREVAQLLGLCEAAVLPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVRICRKSNFG*