Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724190 | XP_003613486.1 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 8.04e-135 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724190 | sp|F4I3V6|SHW1_ARATH | 68.889 | 90 | 28 | 0 | 92 | 181 | 97 | 186 | 7.27e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724190 | G7K712 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 3.84e-135 | 385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0724190 | 0.809523 | 1.814263e-50 | -8.615850e-47 |
| Msa0065390 | Msa0724190 | 0.814757 | 1.309183e-51 | -8.615850e-47 |
| Msa0110710 | Msa0724190 | 0.814300 | 1.653023e-51 | -8.615850e-47 |
| Msa0606140 | Msa0724190 | 0.821750 | 3.420295e-53 | -8.615850e-47 |
| Msa0635990 | Msa0724190 | 0.816820 | 4.539544e-52 | -8.615850e-47 |
| Msa0681890 | Msa0724190 | 0.801980 | 6.968319e-49 | -8.615850e-47 |
| Msa0686610 | Msa0724190 | 0.808106 | 3.645675e-50 | -8.615850e-47 |
| Msa0719340 | Msa0724190 | 0.826912 | 2.090156e-54 | -8.615850e-47 |
| Msa0724190 | Msa0772150 | 0.805579 | 1.246789e-49 | -8.615850e-47 |
| Msa0724190 | Msa0804930 | 0.833742 | 4.477982e-56 | -8.615850e-47 |
| Msa0724190 | Msa0840570 | 0.824948 | 6.119518e-54 | -8.615850e-47 |
| Msa0724190 | Msa1033160 | 0.828747 | 7.571896e-55 | -8.615850e-47 |
| Msa0724190 | Msa1044040 | 0.812228 | 4.711839e-51 | -8.615850e-47 |
| Msa0724190 | Msa1070900 | 0.822508 | 2.281497e-53 | -8.615850e-47 |
| Msa0724190 | Msa1157920 | 0.823759 | 1.164902e-53 | -8.615850e-47 |
| Msa0724190 | Msa1178970 | 0.802743 | 4.854470e-49 | -8.615850e-47 |
| Msa0724190 | Msa1183730 | 0.815529 | 8.824727e-52 | -8.615850e-47 |
| Msa0724190 | Msa1195860 | 0.805704 | 1.174161e-49 | -8.615850e-47 |
| Msa0724190 | Msa1196600 | 0.823975 | 1.036723e-53 | -8.615850e-47 |
| Msa0724190 | Msa1220740 | 0.827068 | 1.918529e-54 | -8.615850e-47 |
| Msa0724190 | Msa1300880 | 0.816423 | 5.572274e-52 | -8.615850e-47 |
| Msa0724190 | Msa1309910 | 0.837377 | 5.387643e-57 | -8.615850e-47 |
| Msa0724190 | Msa1319520 | 0.820196 | 7.791639e-53 | -8.615850e-47 |
| Msa0724190 | Msa1334650 | 0.817533 | 3.139645e-52 | -8.615850e-47 |
| Msa0724190 | Msa1352820 | 0.826185 | 3.115882e-54 | -8.615850e-47 |
| Msa0724190 | Msa1397540 | 0.802291 | 6.014173e-49 | -8.615850e-47 |
| Msa0146470 | Msa0724190 | 0.816030 | 6.821379e-52 | -8.615850e-47 |
| Msa0175900 | Msa0724190 | 0.823752 | 1.169660e-53 | -8.615850e-47 |
| Msa0212960 | Msa0724190 | 0.800023 | 1.750887e-48 | -8.615850e-47 |
| Msa0376900 | Msa0724190 | 0.807155 | 5.804535e-50 | -8.615850e-47 |
| Msa0420070 | Msa0724190 | 0.808327 | 3.269827e-50 | -8.615850e-47 |
| Msa0466100 | Msa0724190 | 0.829079 | 6.289647e-55 | -8.615850e-47 |
| Msa0304870 | Msa0724190 | 0.812913 | 3.337571e-51 | -8.615850e-47 |
| Msa0341260 | Msa0724190 | 0.811331 | 7.385979e-51 | -8.615850e-47 |
| Msa0550630 | Msa0724190 | 0.806136 | 9.525226e-50 | -8.615850e-47 |
| Msa0577870 | Msa0724190 | 0.805177 | 1.514312e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724190 | MtrunA17_Chr5g0415281 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 7.40e-139 | 385 |
| Msa0724190 | MtrunA17_Chr3g0092551 | 86.735 | 98 | 13 | 0 | 2 | 99 | 18 | 115 | 1.46e-57 | 177 |
| Msa0724190 | MtrunA17_Chr6g0475501 | 90.909 | 99 | 9 | 0 | 1 | 99 | 1 | 99 | 7.07e-51 | 159 |
| Msa0724190 | MtrunA17_Chr1g0213191 | 85.714 | 98 | 14 | 0 | 2 | 99 | 3 | 100 | 8.43e-49 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724190 | AT1G69935.1 | 68.889 | 90 | 28 | 0 | 92 | 181 | 97 | 186 | 7.39e-40 | 134 |
| Msa0724190 | AT4G33780.1 | 50.562 | 89 | 44 | 0 | 91 | 179 | 95 | 183 | 4.36e-26 | 99.8 |
| Msa0724190 | AT1G69935.2 | 70.175 | 57 | 17 | 0 | 92 | 148 | 97 | 153 | 3.07e-21 | 85.9 |
Find 46 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTATTTGCTGCAATTT+TGG | 0.129989 | 5_1:+22488650 | Msa0724190:CDS |
| TACCTTGCTATTGCAATTGA+TGG | 0.270957 | 5_1:-22485795 | None:intergenic |
| ATATGAACAATATCAAATAT+AGG | 0.315666 | 5_1:+22488995 | Msa0724190:three_prime_UTR |
| GATGTCTAAAAGAGCTAAAA+AGG | 0.332510 | 5_1:+22486085 | Msa0724190:CDS |
| TATGAACAATATCAAATATA+GGG | 0.376782 | 5_1:+22488996 | Msa0724190:three_prime_UTR |
| GTTTGATGGTAATCTTCATA+TGG | 0.380553 | 5_1:+22488783 | Msa0724190:intron |
| ACGATGGTTGCGGTAAAGTT+TGG | 0.384798 | 5_1:-22485759 | None:intergenic |
| TTGCAGGTCATCTGCAACAT+TGG | 0.387086 | 5_1:+22488624 | Msa0724190:intron |
| ATCTTTAAAAGCTTAATGTT+CGG | 0.417700 | 5_1:+22485618 | Msa0724190:five_prime_UTR |
| GCGGTAAAGTTTGGAAGAAA+AGG | 0.421210 | 5_1:-22485750 | None:intergenic |
| TGCTGAGAAGTGGTGAAGAT+TGG | 0.433124 | 5_1:-22485699 | None:intergenic |
| TGAAACTATTCCCGTTGGAC+TGG | 0.435334 | 5_1:-22488707 | None:intergenic |
| AATCAAGGGAACAATTCCTT+TGG | 0.435782 | 5_1:+22488729 | Msa0724190:CDS |
| TATTATCATCCACCATCGTT+AGG | 0.453332 | 5_1:-22485584 | None:intergenic |
| TTTCTCACTTCCAGTCCAAC+GGG | 0.460048 | 5_1:+22488697 | Msa0724190:CDS |
| CGGTAAAGTTTGGAAGAAAA+GGG | 0.460104 | 5_1:-22485749 | None:intergenic |
| TTTGGCCCTGCGTGTGATAT+GGG | 0.475980 | 5_1:+22488668 | Msa0724190:CDS |
| GCTTAATGTTCGGTCTCAAA+TGG | 0.494852 | 5_1:+22485628 | Msa0724190:exon |
| GAAGCATATGAGATTGATGA+AGG | 0.508183 | 5_1:+22485960 | Msa0724190:CDS |
| AACGGGAATAGTTTCAATCA+AGG | 0.515748 | 5_1:+22488714 | Msa0724190:CDS |
| TGTAGCTGAATAACTCAAGT+GGG | 0.520654 | 5_1:+22485934 | Msa0724190:intron |
| GTTTCTCACTTCCAGTCCAA+CGG | 0.531254 | 5_1:+22488696 | Msa0724190:CDS |
| TAAGTTTACGTGATATGTCT+AGG | 0.534375 | 5_1:-22488760 | None:intergenic |
| CAATGTAAGTCTTACATACA+AGG | 0.538190 | 5_1:+22488937 | Msa0724190:three_prime_UTR |
| TTGATTGAAACTATTCCCGT+TGG | 0.540896 | 5_1:-22488712 | None:intergenic |
| TGAGATTTGAACGATGGTTG+CGG | 0.541900 | 5_1:-22485769 | None:intergenic |
| CAGGTCATCTGCAACATTGG+AGG | 0.554407 | 5_1:+22488627 | Msa0724190:intron |
| AAGGAGAAACTTACAAGTTG+AGG | 0.558855 | 5_1:-22486140 | None:intergenic |
| AACCATCAATTGCAATAGCA+AGG | 0.567244 | 5_1:+22485793 | Msa0724190:CDS |
| TGTCTAGGCTATAGCACCAA+AGG | 0.587415 | 5_1:-22488745 | None:intergenic |
| AGGATATGATGGGATTGAAG+AGG | 0.588220 | 5_1:+22485992 | Msa0724190:CDS |
| TACAAGTTGAGGAGATATAA+CGG | 0.594974 | 5_1:-22486129 | None:intergenic |
| TGTTGTCAAAGCACTTCTTG+AGG | 0.596810 | 5_1:+22487774 | Msa0724190:CDS |
| TTGTAGCTGAATAACTCAAG+TGG | 0.597221 | 5_1:+22485933 | Msa0724190:intron |
| GTGAAGATTGGAGCGTGGAG+AGG | 0.597317 | 5_1:-22485687 | None:intergenic |
| AAGTGGTGAAGATTGGAGCG+TGG | 0.599408 | 5_1:-22485692 | None:intergenic |
| AGCTGCCCATATCACACGCA+GGG | 0.602607 | 5_1:-22488673 | None:intergenic |
| AAAGTTTGGAAGAAAAGGGT+TGG | 0.602762 | 5_1:-22485745 | None:intergenic |
| ACGGGAATAGTTTCAATCAA+GGG | 0.605471 | 5_1:+22488715 | Msa0724190:CDS |
| GAACATTGTTTGCTGAGAAG+TGG | 0.616992 | 5_1:-22485709 | None:intergenic |
| AGTTGAGGAGATATAACGGT+AGG | 0.635503 | 5_1:-22486125 | None:intergenic |
| TGTATGTAAGACTTACATTG+TGG | 0.640582 | 5_1:-22488934 | None:intergenic |
| CAGCTGCCCATATCACACGC+AGG | 0.644863 | 5_1:-22488674 | None:intergenic |
| GTAGCTGAATAACTCAAGTG+GGG | 0.645846 | 5_1:+22485935 | Msa0724190:intron |
| TAGCTGAATAACTCAAGTGG+GGG | 0.668766 | 5_1:+22485936 | Msa0724190:intron |
| GATTGAAGAGGAGAGTGATG+AGG | 0.696250 | 5_1:+22486004 | Msa0724190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAAATGATAATCAATT+GGG | - | chr5_1:22486373-22486392 | None:intergenic | 10.0% |
| !!! | ATTTTCTAAAAGCAAAATTT+TGG | - | chr5_1:22485864-22485883 | None:intergenic | 15.0% |
| !!! | AAAATTTTGCTTTTAGAAAA+TGG | + | chr5_1:22485863-22485882 | Msa0724190:intron | 15.0% |
| !!! | AAATTTTGCTTTTAGAAAAT+GGG | + | chr5_1:22485864-22485883 | Msa0724190:intron | 15.0% |
| !!! | CATTTAAAATGATAATCAAT+TGG | - | chr5_1:22486374-22486393 | None:intergenic | 15.0% |
| !! | ACATTTACTTTAGTAAATAT+AGG | + | chr5_1:22486500-22486519 | Msa0724190:intron | 15.0% |
| !!! | ATTTTTTATTACAGGTAATT+TGG | - | chr5_1:22486847-22486866 | None:intergenic | 15.0% |
| !!! | ATGATAGTAATTTAAAATGA+AGG | - | chr5_1:22487059-22487078 | None:intergenic | 15.0% |
| !!! | TTAAAATTTGAAACATGAAA+AGG | - | chr5_1:22487420-22487439 | None:intergenic | 15.0% |
| !!! | ATGTTTCAAATTTTAAGATT+GGG | + | chr5_1:22487424-22487443 | Msa0724190:intron | 15.0% |
| !!! | TTAGATTATTCTTATGTTTT+TGG | + | chr5_1:22488463-22488482 | Msa0724190:intron | 15.0% |
| !! | ATATGAACAATATCAAATAT+AGG | + | chr5_1:22488995-22489014 | Msa0724190:three_prime_UTR | 15.0% |
| !! | TATGAACAATATCAAATATA+GGG | + | chr5_1:22488996-22489015 | Msa0724190:three_prime_UTR | 15.0% |
| !!! | ATCTTTAAAAGCTTAATGTT+CGG | + | chr5_1:22485618-22485637 | Msa0724190:five_prime_UTR | 20.0% |
| !! | TTAACACAAAAAAAAAATGC+CGG | - | chr5_1:22486204-22486223 | None:intergenic | 20.0% |
| !!! | ATAAAAGAACTCAGTTTTTT+TGG | - | chr5_1:22486408-22486427 | None:intergenic | 20.0% |
| !! | AATCTAAACATACATTAACA+TGG | - | chr5_1:22486436-22486455 | None:intergenic | 20.0% |
| !! | TTAATGTATGTTTAGATTTG+TGG | + | chr5_1:22486438-22486457 | Msa0724190:intron | 20.0% |
| !! | TTATTTCATTTAAATGCTCT+TGG | + | chr5_1:22486784-22486803 | Msa0724190:intron | 20.0% |
| !! | TATTTCATTTAAATGCTCTT+GGG | + | chr5_1:22486785-22486804 | Msa0724190:intron | 20.0% |
| !!! | ACTCTTACACTTTTTATTAT+TGG | - | chr5_1:22487204-22487223 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTGTTCAGTACA+AGG | - | chr5_1:22487258-22487277 | None:intergenic | 20.0% |
| !!! | CATGTTTCAAATTTTAAGAT+TGG | + | chr5_1:22487423-22487442 | Msa0724190:intron | 20.0% |
| !!! | TGTTTCAAATTTTAAGATTG+GGG | + | chr5_1:22487425-22487444 | Msa0724190:intron | 20.0% |
| !!! | TTTTCATTTTGCTTCTTATT+TGG | + | chr5_1:22487693-22487712 | Msa0724190:intron | 20.0% |
| !! | CAAAGTAAAAAAGAAAATAG+AGG | - | chr5_1:22487862-22487881 | None:intergenic | 20.0% |
| !! | TTAATTCTCTTTCTAGATAA+TGG | + | chr5_1:22488314-22488333 | Msa0724190:intron | 20.0% |
| !! | AAATTTCTTTGCTTTATAAC+TGG | + | chr5_1:22488549-22488568 | Msa0724190:intron | 20.0% |
| !!! | TTTTTTTTGTGTTAACCCTT+CGG | + | chr5_1:22486209-22486228 | Msa0724190:intron | 25.0% |
| ! | TGATTATTCATGATCACTAA+TGG | - | chr5_1:22486531-22486550 | None:intergenic | 25.0% |
| !! | CATGACATTTTTGTATAAAC+CGG | + | chr5_1:22486626-22486645 | Msa0724190:intron | 25.0% |
| !! | ATGACATTTTTGTATAAACC+GGG | + | chr5_1:22486627-22486646 | Msa0724190:intron | 25.0% |
| !!! | AACGCTACATTTTTTATTAC+AGG | - | chr5_1:22486855-22486874 | None:intergenic | 25.0% |
| ! | TTTCCTACTTATTCAACTTA+AGG | + | chr5_1:22486938-22486957 | Msa0724190:intron | 25.0% |
| !!! | AACACTACACTCTTTTTTTT+GGG | - | chr5_1:22486991-22487010 | None:intergenic | 25.0% |
| !!! | AAACACTACACTCTTTTTTT+TGG | - | chr5_1:22486992-22487011 | None:intergenic | 25.0% |
| ! | TAGTATGAATTATCACATTC+TGG | + | chr5_1:22487023-22487042 | Msa0724190:intron | 25.0% |
| !! | CATTTAAATTGACTTCTTAG+AGG | + | chr5_1:22487173-22487192 | Msa0724190:intron | 25.0% |
| !! | GTTTGATTCTGCTTAATTTT+TGG | - | chr5_1:22487538-22487557 | None:intergenic | 25.0% |
| ! | CTAGTGTTTAGAAATCAAAA+TGG | - | chr5_1:22487587-22487606 | None:intergenic | 25.0% |
| !!! | CATTTTGATTTCTAAACACT+AGG | + | chr5_1:22487585-22487604 | Msa0724190:intron | 25.0% |
| !!! | GGTGCTTTTTTTAAAAGTTT+AGG | + | chr5_1:22487634-22487653 | Msa0724190:intron | 25.0% |
| ! | TAAGAAGCAAAATGAAAAAG+CGG | - | chr5_1:22487691-22487710 | None:intergenic | 25.0% |
| !!! | ATTTTGCTTCTTATTTGGAT+CGG | + | chr5_1:22487698-22487717 | Msa0724190:intron | 25.0% |
| ! | TGTGTTTACAATTATCTTCT+TGG | + | chr5_1:22487880-22487899 | Msa0724190:intron | 25.0% |
| ! | AAAAGTCTCAAGTAGTATAA+CGG | - | chr5_1:22487907-22487926 | None:intergenic | 25.0% |
| ! | TCTAGAAAGAGAATTAAGAA+AGG | - | chr5_1:22488311-22488330 | None:intergenic | 25.0% |
| ! | ATTGAGACAAAAAAATGATG+CGG | + | chr5_1:22488411-22488430 | Msa0724190:intron | 25.0% |
| ! | ATATAAGCTAACCAAAAGTA+TGG | + | chr5_1:22488497-22488516 | Msa0724190:intron | 25.0% |
| !! | AAAGCAAAGAAATTTTGTGA+AGG | - | chr5_1:22488544-22488563 | None:intergenic | 25.0% |
| !! | AATCTTCATATGGAATTTTC+TGG | + | chr5_1:22488793-22488812 | Msa0724190:intron | 25.0% |
| ! | TTTGTTCTTTTTCCTAACGA+TGG | + | chr5_1:22485572-22485591 | Msa0724190:five_prime_UTR | 30.0% |
| !! | ATCTTGTTGTTTCAGCAAAA+GGG | + | chr5_1:22485834-22485853 | Msa0724190:intron | 30.0% |
| GATGTCTAAAAGAGCTAAAA+AGG | + | chr5_1:22486085-22486104 | Msa0724190:CDS | 30.0% | |
| ! | TACAAGTTGAGGAGATATAA+CGG | - | chr5_1:22486132-22486151 | None:intergenic | 30.0% |
| GTTAGTGAAGACTGAAAAAA+AGG | - | chr5_1:22486162-22486181 | None:intergenic | 30.0% | |
| AAAAAATGCCGGATTTAACT+GGG | - | chr5_1:22486193-22486212 | None:intergenic | 30.0% | |
| AAAAAAATGCCGGATTTAAC+TGG | - | chr5_1:22486194-22486213 | None:intergenic | 30.0% | |
| !! | TGTGATAGTTTTACAGAGAA+TGG | - | chr5_1:22486585-22486604 | None:intergenic | 30.0% |
| AGTTGAATAAGTAGGAAATC+CGG | - | chr5_1:22486936-22486955 | None:intergenic | 30.0% | |
| !! | TCACCTTAAGTTGAATAAGT+AGG | - | chr5_1:22486944-22486963 | None:intergenic | 30.0% |
| !! | AATTATCACATTCTGGAGTT+TGG | + | chr5_1:22487030-22487049 | Msa0724190:intron | 30.0% |
| TCAACTAATTTAAACGCTCT+TGG | + | chr5_1:22487136-22487155 | Msa0724190:intron | 30.0% | |
| CAACTAATTTAAACGCTCTT+GGG | + | chr5_1:22487137-22487156 | Msa0724190:intron | 30.0% | |
| GTACATCACTAGTAATTAGT+CGG | + | chr5_1:22487278-22487297 | Msa0724190:intron | 30.0% | |
| AACCATCACAAAATTCACTA+AGG | - | chr5_1:22487368-22487387 | None:intergenic | 30.0% | |
| !!! | TTTAAGATTGGGGTTTTGTT+TGG | + | chr5_1:22487435-22487454 | Msa0724190:intron | 30.0% |
| ! | CAAACATGCAATTTTTCATG+AGG | + | chr5_1:22487553-22487572 | Msa0724190:intron | 30.0% |
| TAGAATATAAATGTGCTGCA+TGG | + | chr5_1:22487613-22487632 | Msa0724190:intron | 30.0% | |
| !! | TTTTGCTTCTTATTTGGATC+GGG | + | chr5_1:22487699-22487718 | Msa0724190:intron | 30.0% |
| AATGTTGACAAAGTAAACGA+AGG | - | chr5_1:22487986-22488005 | None:intergenic | 30.0% | |
| TCATTTCCTAAAACTTGTGT+TGG | + | chr5_1:22488014-22488033 | Msa0724190:intron | 30.0% | |
| ! | GTAAATCCAACACAAGTTTT+AGG | - | chr5_1:22488023-22488042 | None:intergenic | 30.0% |
| ! | AAGAGTCTCTTTTCTCATAT+TGG | + | chr5_1:22488193-22488212 | Msa0724190:intron | 30.0% |
| TTGAGACAAAAAAATGATGC+GGG | + | chr5_1:22488412-22488431 | Msa0724190:intron | 30.0% | |
| ! | AAATTCCAGAACCATACTTT+TGG | - | chr5_1:22488511-22488530 | None:intergenic | 30.0% |
| AAGTAGTAGCTAACAACAAT+CGG | + | chr5_1:22488584-22488603 | Msa0724190:intron | 30.0% | |
| TAAGTTTACGTGATATGTCT+AGG | - | chr5_1:22488763-22488782 | None:intergenic | 30.0% | |
| ! | ATCACGTAAACTTAGTTTGA+TGG | + | chr5_1:22488769-22488788 | Msa0724190:intron | 30.0% |
| ! | GTTTGATGGTAATCTTCATA+TGG | + | chr5_1:22488783-22488802 | Msa0724190:intron | 30.0% |
| !! | AGCTGAATAAAAAGCATCAT+GGG | + | chr5_1:22488838-22488857 | Msa0724190:three_prime_UTR | 30.0% |
| TGTATGTAAGACTTACATTG+TGG | - | chr5_1:22488937-22488956 | None:intergenic | 30.0% | |
| CAATGTAAGTCTTACATACA+AGG | + | chr5_1:22488937-22488956 | Msa0724190:three_prime_UTR | 30.0% | |
| TATTATCATCCACCATCGTT+AGG | - | chr5_1:22485587-22485606 | None:intergenic | 35.0% | |
| AAAGTTTGGAAGAAAAGGGT+TGG | - | chr5_1:22485748-22485767 | None:intergenic | 35.0% | |
| CGGTAAAGTTTGGAAGAAAA+GGG | - | chr5_1:22485752-22485771 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGAGATTTGAACGA+TGG | - | chr5_1:22485778-22485797 | None:intergenic | 35.0% |
| AACCATCAATTGCAATAGCA+AGG | + | chr5_1:22485793-22485812 | Msa0724190:CDS | 35.0% | |
| !! | TACCTTGCTATTGCAATTGA+TGG | - | chr5_1:22485798-22485817 | None:intergenic | 35.0% |
| TTGCTGAAACAACAAGATGA+AGG | - | chr5_1:22485832-22485851 | None:intergenic | 35.0% | |
| !! | CATCTTGTTGTTTCAGCAAA+AGG | + | chr5_1:22485833-22485852 | Msa0724190:intron | 35.0% |
| TTGTAGCTGAATAACTCAAG+TGG | + | chr5_1:22485933-22485952 | Msa0724190:intron | 35.0% | |
| TGTAGCTGAATAACTCAAGT+GGG | + | chr5_1:22485934-22485953 | Msa0724190:intron | 35.0% | |
| GAAGCATATGAGATTGATGA+AGG | + | chr5_1:22485960-22485979 | Msa0724190:CDS | 35.0% | |
| !!! | GAGATTGATGAAGGTGTTTT+TGG | + | chr5_1:22485969-22485988 | Msa0724190:CDS | 35.0% |
| !!! | ATTGATGAAGGTGTTTTTGG+AGG | + | chr5_1:22485972-22485991 | Msa0724190:CDS | 35.0% |
| !!! | GTGTTTTTGGAGGATATGAT+GGG | + | chr5_1:22485982-22486001 | Msa0724190:CDS | 35.0% |
| AAGGAGAAACTTACAAGTTG+AGG | - | chr5_1:22486143-22486162 | None:intergenic | 35.0% | |
| ! | TCAGTGAGTCATTGTGATTT+TGG | - | chr5_1:22486467-22486486 | None:intergenic | 35.0% |
| ! | TTTTTGTATAAACCGGGCTT+CGG | + | chr5_1:22486633-22486652 | Msa0724190:intron | 35.0% |
| GTCGCTTCTAACTTAATCAA+AGG | - | chr5_1:22486759-22486778 | None:intergenic | 35.0% | |
| TTGAATAAGTAGGAAATCCG+GGG | - | chr5_1:22486934-22486953 | None:intergenic | 35.0% | |
| GTTGAATAAGTAGGAAATCC+GGG | - | chr5_1:22486935-22486954 | None:intergenic | 35.0% | |
| !! | TTTTGGGTCAATTAGCATAG+TGG | - | chr5_1:22486975-22486994 | None:intergenic | 35.0% |
| TAATTTAAACGCTCTTGGGT+TGG | + | chr5_1:22487141-22487160 | Msa0724190:intron | 35.0% | |
| AATTTAAACGCTCTTGGGTT+GGG | + | chr5_1:22487142-22487161 | Msa0724190:intron | 35.0% | |
| TTCACTAAGGAGTTACAAAG+AGG | - | chr5_1:22487355-22487374 | None:intergenic | 35.0% | |
| ! | CTCCTTAGTGAATTTTGTGA+TGG | + | chr5_1:22487363-22487382 | Msa0724190:intron | 35.0% |
| !! | GTTTGGATTAGCTAATCTTG+TGG | + | chr5_1:22487452-22487471 | Msa0724190:intron | 35.0% |
| ! | ATGCAATTTTTCATGAGGCA+TGG | + | chr5_1:22487558-22487577 | Msa0724190:intron | 35.0% |
| TTATTTGGATCGGGAAATTC+AGG | + | chr5_1:22487708-22487727 | Msa0724190:intron | 35.0% | |
| !!! | AGGTTTCTTTTGCTGTTGAT+GGG | + | chr5_1:22487728-22487747 | Msa0724190:intron | 35.0% |
| TTAATTAAGCCACACAGTAG+TGG | - | chr5_1:22487810-22487829 | None:intergenic | 35.0% | |
| ! | AAGAAGATAAAGTGCTAGCT+AGG | + | chr5_1:22488088-22488107 | Msa0724190:intron | 35.0% |
| ! | AGAAGATAAAGTGCTAGCTA+GGG | + | chr5_1:22488089-22488108 | Msa0724190:intron | 35.0% |
| GATAGCATTTGTGTAGTTTG+AGG | + | chr5_1:22488377-22488396 | Msa0724190:intron | 35.0% | |
| GGTGAACTTGAACAATTACT+GGG | + | chr5_1:22488433-22488452 | Msa0724190:intron | 35.0% | |
| ! | GAATATTGACTGTGAATTGC+AGG | + | chr5_1:22488608-22488627 | Msa0724190:intron | 35.0% |
| !! | CACTGTATTTGCTGCAATTT+TGG | + | chr5_1:22488650-22488669 | Msa0724190:CDS | 35.0% |
| TTGATTGAAACTATTCCCGT+TGG | - | chr5_1:22488715-22488734 | None:intergenic | 35.0% | |
| AACGGGAATAGTTTCAATCA+AGG | + | chr5_1:22488714-22488733 | Msa0724190:CDS | 35.0% | |
| ACGGGAATAGTTTCAATCAA+GGG | + | chr5_1:22488715-22488734 | Msa0724190:CDS | 35.0% | |
| AATCAAGGGAACAATTCCTT+TGG | + | chr5_1:22488729-22488748 | Msa0724190:CDS | 35.0% | |
| !! | CTGGAAGTGCATATTTTATG+TGG | + | chr5_1:22488812-22488831 | Msa0724190:three_prime_UTR | 35.0% |
| !! | CAGCTGAATAAAAAGCATCA+TGG | + | chr5_1:22488837-22488856 | Msa0724190:three_prime_UTR | 35.0% |
| ! | GTTCTTTTTCCTAACGATGG+TGG | + | chr5_1:22485575-22485594 | Msa0724190:five_prime_UTR | 40.0% |
| GCTTAATGTTCGGTCTCAAA+TGG | + | chr5_1:22485628-22485647 | Msa0724190:exon | 40.0% | |
| ! | GAACATTGTTTGCTGAGAAG+TGG | - | chr5_1:22485712-22485731 | None:intergenic | 40.0% |
| GCGGTAAAGTTTGGAAGAAA+AGG | - | chr5_1:22485753-22485772 | None:intergenic | 40.0% | |
| TGAGATTTGAACGATGGTTG+CGG | - | chr5_1:22485772-22485791 | None:intergenic | 40.0% | |
| GTAGCTGAATAACTCAAGTG+GGG | + | chr5_1:22485935-22485954 | Msa0724190:intron | 40.0% | |
| TAGCTGAATAACTCAAGTGG+GGG | + | chr5_1:22485936-22485955 | Msa0724190:intron | 40.0% | |
| !!! | GGTGTTTTTGGAGGATATGA+TGG | + | chr5_1:22485981-22486000 | Msa0724190:CDS | 40.0% |
| ! | AGGATATGATGGGATTGAAG+AGG | + | chr5_1:22485992-22486011 | Msa0724190:CDS | 40.0% |
| AAAGAGCTAAAAAGGCTTCG+AGG | + | chr5_1:22486093-22486112 | Msa0724190:CDS | 40.0% | |
| AGTTGAGGAGATATAACGGT+AGG | - | chr5_1:22486128-22486147 | None:intergenic | 40.0% | |
| CAATTTCCATGAGAACCGAA+GGG | - | chr5_1:22486227-22486246 | None:intergenic | 40.0% | |
| TCAATTTCCATGAGAACCGA+AGG | - | chr5_1:22486228-22486247 | None:intergenic | 40.0% | |
| TGACGTTGTAATCCAGAGTT+CGG | + | chr5_1:22486245-22486264 | Msa0724190:intron | 40.0% | |
| GGCAAATAATTGTTCAAGCC+AGG | + | chr5_1:22486288-22486307 | Msa0724190:intron | 40.0% | |
| TCTCCTAAACAATTCGTCCT+TGG | + | chr5_1:22486325-22486344 | Msa0724190:intron | 40.0% | |
| ATGGTTAATGAGTTCCACCA+AGG | - | chr5_1:22486345-22486364 | None:intergenic | 40.0% | |
| GATAATCAATTGGGCTCAGA+TGG | - | chr5_1:22486364-22486383 | None:intergenic | 40.0% | |
| ! | TTTTGTATAAACCGGGCTTC+GGG | + | chr5_1:22486634-22486653 | Msa0724190:intron | 40.0% |
| ! | TTAAATGCTCTTGGGTTGCA+TGG | + | chr5_1:22486793-22486812 | Msa0724190:intron | 40.0% |
| CGAGTTCGAACTCTCAAAAA+TGG | - | chr5_1:22487085-22487104 | None:intergenic | 40.0% | |
| !! | TTTTTGAGAGTTCGAACTCG+AGG | + | chr5_1:22487085-22487104 | Msa0724190:intron | 40.0% |
| AAGAGGAGAAGGAAACTTGA+AGG | - | chr5_1:22487338-22487357 | None:intergenic | 40.0% | |
| AAGGAGTTACAAAGAGGAGA+AGG | - | chr5_1:22487349-22487368 | None:intergenic | 40.0% | |
| GCAAAATGAAAAAGCGGTCA+AGG | - | chr5_1:22487685-22487704 | None:intergenic | 40.0% | |
| !!! | CAGGTTTCTTTTGCTGTTGA+TGG | + | chr5_1:22487727-22487746 | Msa0724190:intron | 40.0% |
| ! | TGTTGTCAAAGCACTTCTTG+AGG | + | chr5_1:22487774-22487793 | Msa0724190:CDS | 40.0% |
| ! | ATTGTTTCTCCACTACTGTG+TGG | + | chr5_1:22487798-22487817 | Msa0724190:intron | 40.0% |
| TGCATAAGAGATGCGAAAGA+GGG | + | chr5_1:22487934-22487953 | Msa0724190:intron | 40.0% | |
| AGCTAGGGATGTTGTATTTC+AGG | + | chr5_1:22488104-22488123 | Msa0724190:intron | 40.0% | |
| GGGTGAACTTGAACAATTAC+TGG | + | chr5_1:22488432-22488451 | Msa0724190:intron | 40.0% | |
| ACTTGAACAATTACTGGGAC+AGG | + | chr5_1:22488438-22488457 | Msa0724190:intron | 40.0% | |
| ! | GCTAACCAAAAGTATGGTTC+TGG | + | chr5_1:22488503-22488522 | Msa0724190:intron | 40.0% |
| GTGTCTGAATTACACACAGA+AGG | + | chr5_1:22488899-22488918 | Msa0724190:intron | 40.0% | |
| TGCTGAGAAGTGGTGAAGAT+TGG | - | chr5_1:22485702-22485721 | None:intergenic | 45.0% | |
| ACGATGGTTGCGGTAAAGTT+TGG | - | chr5_1:22485762-22485781 | None:intergenic | 45.0% | |
| GATTGAAGAGGAGAGTGATG+AGG | + | chr5_1:22486004-22486023 | Msa0724190:CDS | 45.0% | |
| CATCTGAGCCCAGTTAAATC+CGG | + | chr5_1:22486182-22486201 | Msa0724190:intron | 45.0% | |
| TGTTAACCCTTCGGTTCTCA+TGG | + | chr5_1:22486218-22486237 | Msa0724190:intron | 45.0% | |
| TCAAGCCAGGAATCAAACTC+AGG | + | chr5_1:22486301-22486320 | Msa0724190:intron | 45.0% | |
| GAGAACCTGAGTTTGATTCC+TGG | - | chr5_1:22486309-22486328 | None:intergenic | 45.0% | |
| CCACCAAGGACGAATTGTTT+AGG | - | chr5_1:22486331-22486350 | None:intergenic | 45.0% | |
| CCTAAACAATTCGTCCTTGG+TGG | + | chr5_1:22486328-22486347 | Msa0724190:intron | 45.0% | |
| ! | CAAGAATTTTGCCGCTCATG+TGG | - | chr5_1:22486690-22486709 | None:intergenic | 45.0% |
| ATATCCCTACCAACTGCTCA+CGG | - | chr5_1:22486884-22486903 | None:intergenic | 45.0% | |
| !! | AGCAGTTGGTAGGGATATTG+CGG | + | chr5_1:22486886-22486905 | Msa0724190:intron | 45.0% |
| !!! | CTCGAGGTTTTTAGTCGAAC+TGG | + | chr5_1:22487101-22487120 | Msa0724190:intron | 45.0% |
| GTGCATAAGAGATGCGAAAG+AGG | + | chr5_1:22487933-22487952 | Msa0724190:intron | 45.0% | |
| TTGCAGGTCATCTGCAACAT+TGG | + | chr5_1:22488624-22488643 | Msa0724190:intron | 45.0% | |
| GTTTCTCACTTCCAGTCCAA+CGG | + | chr5_1:22488696-22488715 | Msa0724190:CDS | 45.0% | |
| TTTCTCACTTCCAGTCCAAC+GGG | + | chr5_1:22488697-22488716 | Msa0724190:CDS | 45.0% | |
| TGAAACTATTCCCGTTGGAC+TGG | - | chr5_1:22488710-22488729 | None:intergenic | 45.0% | |
| TGTCTAGGCTATAGCACCAA+AGG | - | chr5_1:22488748-22488767 | None:intergenic | 45.0% | |
| AAGTGGTGAAGATTGGAGCG+TGG | - | chr5_1:22485695-22485714 | None:intergenic | 50.0% | |
| CGGATTTAACTGGGCTCAGA+TGG | - | chr5_1:22486184-22486203 | None:intergenic | 50.0% | |
| GCTGCGAGGTAAGTTAAGTC+TGG | + | chr5_1:22486267-22486286 | Msa0724190:intron | 50.0% | |
| ATCGGAATGCAACCCTGAGT+CGG | + | chr5_1:22486658-22486677 | Msa0724190:intron | 50.0% | |
| TATCCCTACCAACTGCTCAC+GGG | - | chr5_1:22486883-22486902 | None:intergenic | 50.0% | |
| GTAGGGATATTGCGGTATGC+AGG | + | chr5_1:22486894-22486913 | Msa0724190:intron | 50.0% | |
| ATATTGCGGTATGCAGGAGC+TGG | + | chr5_1:22486900-22486919 | Msa0724190:intron | 50.0% | |
| TATTGCGGTATGCAGGAGCT+GGG | + | chr5_1:22486901-22486920 | Msa0724190:intron | 50.0% | |
| AGCGGTCAAGGACACATTGA+AGG | - | chr5_1:22487673-22487692 | None:intergenic | 50.0% | |
| CAGGTCATCTGCAACATTGG+AGG | + | chr5_1:22488627-22488646 | Msa0724190:intron | 50.0% | |
| ! | TTTTGGCCCTGCGTGTGATA+TGG | + | chr5_1:22488667-22488686 | Msa0724190:CDS | 50.0% |
| TTTGGCCCTGCGTGTGATAT+GGG | + | chr5_1:22488668-22488687 | Msa0724190:CDS | 50.0% | |
| GTGAAGATTGGAGCGTGGAG+AGG | - | chr5_1:22485690-22485709 | None:intergenic | 55.0% | |
| TAATCCAGAGTTCGGCTGCG+AGG | + | chr5_1:22486253-22486272 | Msa0724190:intron | 55.0% | |
| ATAAACCGGGCTTCGGGCAT+CGG | + | chr5_1:22486640-22486659 | Msa0724190:intron | 55.0% | |
| TCGGAATGCAACCCTGAGTC+GGG | + | chr5_1:22486659-22486678 | Msa0724190:intron | 55.0% | |
| AATGCAACCCTGAGTCGGGT+GGG | + | chr5_1:22486663-22486682 | Msa0724190:intron | 55.0% | |
| GTTTAGTCCCCGTGAGCAGT+TGG | + | chr5_1:22486872-22486891 | Msa0724190:intron | 55.0% | |
| ATCCCTACCAACTGCTCACG+GGG | - | chr5_1:22486882-22486901 | None:intergenic | 55.0% | |
| ATTGCGGTATGCAGGAGCTG+GGG | + | chr5_1:22486902-22486921 | Msa0724190:intron | 55.0% | |
| GACTTGCATGATGCACCGCA+GGG | + | chr5_1:22488336-22488355 | Msa0724190:intron | 55.0% | |
| CACCGCAGGGTGAGTTATGT+GGG | + | chr5_1:22488349-22488368 | Msa0724190:intron | 55.0% | |
| CTCCCACATAACTCACCCTG+CGG | - | chr5_1:22488354-22488373 | None:intergenic | 55.0% | |
| GCAGGGTGAGTTATGTGGGA+GGG | + | chr5_1:22488353-22488372 | Msa0724190:intron | 55.0% | |
| AGCTGCCCATATCACACGCA+GGG | - | chr5_1:22488676-22488695 | None:intergenic | 55.0% | |
| CTTACCTCGCAGCCGAACTC+TGG | - | chr5_1:22486260-22486279 | None:intergenic | 60.0% | |
| GAATGCAACCCTGAGTCGGG+TGG | + | chr5_1:22486662-22486681 | Msa0724190:intron | 60.0% | |
| ATGTGGTCCCACCCGACTCA+GGG | - | chr5_1:22486673-22486692 | None:intergenic | 60.0% | |
| AGTCCCCGTGAGCAGTTGGT+AGG | + | chr5_1:22486876-22486895 | Msa0724190:intron | 60.0% | |
| ! | GTCCCCGTGAGCAGTTGGTA+GGG | + | chr5_1:22486877-22486896 | Msa0724190:intron | 60.0% |
| GGACTTGCATGATGCACCGC+AGG | + | chr5_1:22488335-22488354 | Msa0724190:intron | 60.0% | |
| GCACCGCAGGGTGAGTTATG+TGG | + | chr5_1:22488348-22488367 | Msa0724190:intron | 60.0% | |
| CGCAGGGTGAGTTATGTGGG+AGG | + | chr5_1:22488352-22488371 | Msa0724190:intron | 60.0% | |
| CAGCTGCCCATATCACACGC+AGG | - | chr5_1:22488677-22488696 | None:intergenic | 60.0% | |
| GCATTCCGATGCCCGAAGCC+CGG | - | chr5_1:22486648-22486667 | None:intergenic | 65.0% | |
| CATGTGGTCCCACCCGACTC+AGG | - | chr5_1:22486674-22486693 | None:intergenic | 65.0% | |
| GTCGGGTGGGACCACATGAG+CGG | + | chr5_1:22486676-22486695 | Msa0724190:intron | 65.0% | |
| AGGAGCTGGGGTTCGAACCC+CGG | + | chr5_1:22486914-22486933 | Msa0724190:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 22485560 | 22489101 | 22485560 | ID=Msa0724190;Name=Msa0724190 |
| chr5_1 | mRNA | 22485560 | 22489101 | 22485560 | ID=Msa0724190-mRNA-1;Parent=Msa0724190;Name=Msa0724190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=87|1|1|1|0.6|0.5|6|289|192 |
| chr5_1 | exon | 22485560 | 22485814 | 22485560 | ID=Msa0724190-mRNA-1:exon:8457;Parent=Msa0724190-mRNA-1 |
| chr5_1 | exon | 22485939 | 22486148 | 22485939 | ID=Msa0724190-mRNA-1:exon:8458;Parent=Msa0724190-mRNA-1 |
| chr5_1 | exon | 22487730 | 22487795 | 22487730 | ID=Msa0724190-mRNA-1:exon:8459;Parent=Msa0724190-mRNA-1 |
| chr5_1 | exon | 22488630 | 22488768 | 22488630 | ID=Msa0724190-mRNA-1:exon:8460;Parent=Msa0724190-mRNA-1 |
| chr5_1 | exon | 22488796 | 22488894 | 22488796 | ID=Msa0724190-mRNA-1:exon:8461;Parent=Msa0724190-mRNA-1 |
| chr5_1 | exon | 22488916 | 22489101 | 22488916 | ID=Msa0724190-mRNA-1:exon:8462;Parent=Msa0724190-mRNA-1 |
| chr5_1 | five_prime_UTR | 22485560 | 22485646 | 22485560 | ID=Msa0724190-mRNA-1:five_prime_utr;Parent=Msa0724190-mRNA-1 |
| chr5_1 | CDS | 22485647 | 22485814 | 22485647 | ID=Msa0724190-mRNA-1:cds;Parent=Msa0724190-mRNA-1 |
| chr5_1 | CDS | 22485939 | 22486148 | 22485939 | ID=Msa0724190-mRNA-1:cds;Parent=Msa0724190-mRNA-1 |
| chr5_1 | CDS | 22487730 | 22487795 | 22487730 | ID=Msa0724190-mRNA-1:cds;Parent=Msa0724190-mRNA-1 |
| chr5_1 | CDS | 22488630 | 22488764 | 22488630 | ID=Msa0724190-mRNA-1:cds;Parent=Msa0724190-mRNA-1 |
| chr5_1 | three_prime_UTR | 22488765 | 22488768 | 22488765 | ID=Msa0724190-mRNA-1:three_prime_utr;Parent=Msa0724190-mRNA-1 |
| chr5_1 | three_prime_UTR | 22488796 | 22488894 | 22488796 | ID=Msa0724190-mRNA-1:three_prime_utr;Parent=Msa0724190-mRNA-1 |
| chr5_1 | three_prime_UTR | 22488916 | 22489101 | 22488916 | ID=Msa0724190-mRNA-1:three_prime_utr;Parent=Msa0724190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
