AlfalfaGEDB | Msa0376900

M. sativa cultivar zhongmu-4 / Msa0376900

KEGG: K05275
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010287 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0036094 GO:0042364 GO:0042651 GO:0042816 GO:0042817 GO:0042819 GO:0042821 GO:0042822 GO:0042823 GO:0043094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046184 GO:0046483 GO:0048037 GO:0050236 GO:0050661 GO:0050662 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0070402 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0097159 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617
PFAM: PF00248.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376900	AES72571.2	63.636	66	12	1	312	365	445	510	6.55e-11	77.0
Msa0376900	AES72571.2	83.267	502	38	5	1	458	1	500	0.0	812

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376900	sp\|Q56Y42\|PLR1_ARATH	73.569	367	92	2	1	366	3	365	0.0	570
Msa0376900	sp\|Q56Y42\|PLR1_ARATH	58.333	60	24	1	391	449	298	357	4.03e-14	77.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376900	G7J873	63.636	66	12	1	312	365	445	510	3.13e-11	77.0
Msa0376900	G7J873	83.267	502	38	5	1	458	1	500	0.0	812

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0376900	0.814374	1.591493e-51	-8.615850e-47
Msa0000220	Msa0376900	0.897041	2.064064e-76	-8.615850e-47
Msa0000500	Msa0376900	0.829079	6.290647e-55	-8.615850e-47
Msa0001460	Msa0376900	0.851331	9.513942e-61	-8.615850e-47
Msa0001510	Msa0376900	0.819869	9.260795e-53	-8.615850e-47
Msa0001540	Msa0376900	0.841899	3.591135e-58	-8.615850e-47
Msa0002060	Msa0376900	0.855388	6.522807e-62	-8.615850e-47
Msa0003470	Msa0376900	0.841045	6.029186e-58	-8.615850e-47
Msa0005160	Msa0376900	0.838594	2.620409e-57	-8.615850e-47
Msa0005690	Msa0376900	0.846729	1.808885e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376900	MtrunA17_Chr3g0127491	98.087	366	5	2	1	366	1	364	0.0	731
Msa0376900	MtrunA17_Chr3g0127491	85.417	48	7	0	402	449	309	356	1.27e-18	87.4
Msa0376900	MtrunA17_Chr3g0095421	41.284	327	178	7	36	353	33	354	1.61e-77	246
Msa0376900	MtrunA17_Chr7g0274061	27.841	352	206	12	46	378	21	343	4.11e-26	108
Msa0376900	MtrunA17_Chr7g0274071	26.488	336	212	12	34	353	4	320	2.83e-25	106
Msa0376900	MtrunA17_Chr1g0204651	28.060	335	196	14	37	351	4	313	2.85e-24	103
Msa0376900	MtrunA17_Chr7g0222171	28.523	298	170	12	73	351	38	311	7.54e-24	102
Msa0376900	MtrunA17_Chr7g0221791	27.703	296	174	12	73	351	38	310	2.15e-21	95.1
Msa0376900	MtrunA17_Chr7g0274041	25.526	333	201	14	40	351	9	315	2.38e-20	92.0
Msa0376900	MtrunA17_Chr1g0169691	25.220	341	216	14	37	357	2	323	3.98e-17	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376900	AT5G53580.1	73.569	367	92	2	1	366	3	365	0.0	570
Msa0376900	AT5G53580.1	58.333	60	24	1	391	449	298	357	4.10e-15	77.4
Msa0376900	AT1G06690.1	39.823	339	178	8	30	353	38	365	1.25e-77	248
Msa0376900	AT1G60680.1	27.628	333	198	14	39	352	8	316	1.72e-22	99.0
Msa0376900	AT1G60710.1	28.614	332	195	15	39	352	8	315	3.27e-22	98.2
Msa0376900	AT1G04690.1	27.273	341	209	15	37	357	2	323	2.30e-21	95.5
Msa0376900	AT1G10810.1	28.440	327	194	16	39	348	8	311	4.21e-21	94.7
Msa0376900	AT1G60750.1	27.273	330	196	14	34	352	4	300	1.83e-20	92.8
Msa0376900	AT1G60690.1	27.219	338	200	16	35	352	4	315	1.34e-19	90.5
Msa0376900	AT1G60730.1	26.807	332	201	15	39	352	8	315	6.62e-19	88.6

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Find 125 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATAACATGTTCACA+TGG	0.628583	3_1:+77224931	None:intergenic
AAAATTTGGGTGCTCTGGGT+TGG	0.513121	3_1:-77227128	Msa0376900:CDS
AAAATTTGGGTGCTCTTGGT+TGG	0.496808	3_1:-77225080	Msa0376900:CDS
AAACGAGCTACTTCAGTTGG+AGG	0.564890	3_1:-77227094	Msa0376900:CDS
AAAGGAAAAGATGATGGTAA+AGG	0.455252	3_1:+77230452	None:intergenic
AAAGGTACAACTCCAATTCC+TGG	0.459422	3_1:-77225129	Msa0376900:CDS
AAAGGTACAATTCCAATTCC+TGG	0.430013	3_1:-77227177	Msa0376900:CDS
AACACAAGCAGAGGAAAATT+TGG	0.222359	3_1:-77227142	Msa0376900:CDS
AAGACGCAAAACCATGTCAC+AGG	0.598290	3_1:-77228304	Msa0376900:intron
AAGAGTATTTGTGATTCTCT+GGG	0.553509	3_1:-77228593	Msa0376900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGTGATTAAACTGTTGTA+AGG	+	chr3_1:77225553-77225572	None:intergenic	30.0%
AAACAGCTATGAAACAACTA+AGG	+	chr3_1:77225600-77225619	None:intergenic	30.0%
AAGGATGAATGGAAAAGTAA+GGG	-	chr3_1:77225800-77225819	Msa0376900:intron	30.0%
CAAAGAGCTAATTCTTGAAA+AGG	+	chr3_1:77226193-77226212	None:intergenic	30.0%
TTTAGTGGCAATGTATGATA+AGG	-	chr3_1:77226219-77226238	Msa0376900:intron	30.0%
TTTAATAGTAGGATCGCATA+AGG	-	chr3_1:77226258-77226277	Msa0376900:intron	30.0%
TTATGCAAAACACTATACCT+GGG	+	chr3_1:77226572-77226591	None:intergenic	30.0%
ATTATGCAAAACACTATACC+TGG	+	chr3_1:77226573-77226592	None:intergenic	30.0%
TCAGTAGTGAATAATAACCA+TGG	-	chr3_1:77226643-77226662	Msa0376900:intron	30.0%
TTGAGAAACTACAACAGAAA+AGG	-	chr3_1:77226694-77226713	Msa0376900:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	77224906	77230706	77224906	ID=Msa0376900;Name=Msa0376900
chr3_1	mRNA	77224906	77230706	77224906	ID=Msa0376900-mRNA-1;Parent=Msa0376900;Name=Msa0376900-mRNA-1;_AED=0.21;_eAED=0.26;_QI=178\|0.75\|0.77\|1\|1\|1\|9\|0\|485
chr3_1	exon	77224906	77225160	77224906	ID=Msa0376900-mRNA-1:exon:18454;Parent=Msa0376900-mRNA-1
chr3_1	exon	77225555	77225660	77225555	ID=Msa0376900-mRNA-1:exon:18453;Parent=Msa0376900-mRNA-1
chr3_1	exon	77227042	77227223	77227042	ID=Msa0376900-mRNA-1:exon:18452;Parent=Msa0376900-mRNA-1
chr3_1	exon	77228305	77228398	77228305	ID=Msa0376900-mRNA-1:exon:18451;Parent=Msa0376900-mRNA-1
chr3_1	exon	77228509	77228660	77228509	ID=Msa0376900-mRNA-1:exon:18450;Parent=Msa0376900-mRNA-1
chr3_1	exon	77229039	77229140	77229039	ID=Msa0376900-mRNA-1:exon:18449;Parent=Msa0376900-mRNA-1
chr3_1	exon	77229372	77229495	77229372	ID=Msa0376900-mRNA-1:exon:18448;Parent=Msa0376900-mRNA-1
chr3_1	exon	77229590	77229683	77229590	ID=Msa0376900-mRNA-1:exon:18447;Parent=Msa0376900-mRNA-1
chr3_1	exon	77230180	77230706	77230180	ID=Msa0376900-mRNA-1:exon:18446;Parent=Msa0376900-mRNA-1
chr3_1	five_prime_UTR	77230529	77230706	77230529	ID=Msa0376900-mRNA-1:five_prime_utr;Parent=Msa0376900-mRNA-1
chr3_1	CDS	77230180	77230528	77230180	ID=Msa0376900-mRNA-1:cds;Parent=Msa0376900-mRNA-1
chr3_1	CDS	77229590	77229683	77229590	ID=Msa0376900-mRNA-1:cds;Parent=Msa0376900-mRNA-1
chr3_1	CDS	77229372	77229495	77229372	ID=Msa0376900-mRNA-1:cds;Parent=Msa0376900-mRNA-1
chr3_1	CDS	77229039	77229140	77229039	ID=Msa0376900-mRNA-1:cds;Parent=Msa0376900-mRNA-1
chr3_1	CDS	77228509	77228660	77228509	ID=Msa0376900-mRNA-1:cds;Parent=Msa0376900-mRNA-1
chr3_1	CDS	77228305	77228398	77228305	ID=Msa0376900-mRNA-1:cds;Parent=Msa0376900-mRNA-1
chr3_1	CDS	77227042	77227223	77227042	ID=Msa0376900-mRNA-1:cds;Parent=Msa0376900-mRNA-1
chr3_1	CDS	77225555	77225660	77225555	ID=Msa0376900-mRNA-1:cds;Parent=Msa0376900-mRNA-1
chr3_1	CDS	77224906	77225160	77224906	ID=Msa0376900-mRNA-1:cds;Parent=Msa0376900-mRNA-1

Gene Sequence

>Msa0376900

ATGGCACTCTCATCTTGCTGCAGTTTTGTTGTTGGTTCATCAAATATTAACAACCCTTTACCATCATCTTTTCCTTTCAAATTCCCTTCCCTATGGCCATCATCCACCCAAAACCAAAAGCTCAAGATGGGACCTCTGAGTGTGTCTCCAATGGGTTTTGGAACTTGGGCATGGGGTAATCAGCTTCTTTGGGGGTATCAAGAATCCATGGATGATGATCTACAGCAAGTGTTTAACACGGCTGTTGAGAATGGTGTTAATCTTTTTGATACTGCTGATTCTTATGGTACTGGAAGGTTTAATGGTCAAAGTGAGAAACTTCTTGGGAAGTTCATTCGAGATTTTCGAGAGAAAAAGGGGAGCCGGAGTGAAATTGTGATTGCTACAAAGTTTGCTGCTTATCCATGGCGCCTTACACCAGGGCAGTTCGTCGATGCTTGCAGGGCATCACTAGATAGGATGCAGATTGAGCAAATTGGGATAGGACAACTGCATTGGTCAACTGCAAATTACGCTCCTTTTCAAGAATTAGCTCTTTGGGATGGTTTAGTGGCAATGTATGATAAGGGTTTAGTTCAAGCTGTTGGAGTGAGTAATTATGGACCAAAGCAGCTTTTGAAGATACATGATTACTTGAAAGACCGCGGAGTTCCGTTATGCTCAGCCCAGGTGCAATTTTCTTTGCTAAGCATGGGGGAAGATCAATTAGAGATCAAGAGTATTTGTGATTCTCTGGGTATTCGCGTAATTGCTTATAGTCCTCTAGGACTTGGAATGCTTACTGGGAAATACTCAGCATCCAAACTTCCAACTGGACCAAGGGGATTGCTATTTAAGCAAATACTTCCAGGACTGGATCCTTTATTGAGTTCCCTGAGAGATATTGCAAATAAAAGACGCAAAACCATGTCACAGGTTGCAATAAATTGGTGCATATGCAAAGGTACAATTCCAATTCCTGGAGTCAAGTCAATAACACAAGCAGAGGAAAATTTGGGTGCTCTGGGTTGGCGTCTCTCCTCAAACGAGCTACTTCAGTTGGAGGATGCAGCACAGCAATCGCCTCGCAGGATGATCCAAAATATTTTTCAAACCAGAATTTATTTTCCTCACAATCATCTGAAAGGAGCATTCCAACTACCAAAATCTATAGTTATCACATTAAGCATGCGCATGGTTACAGTTCCATCTACTTCTGCAAAGTGCATATGCAAAGGTACAACTCCAATTCCTGGAGTCAAGTCAATAGCACAAGCAGAGGAAAATTTGGGTGCTCTTGGTTGGCGTCTTTCATTAGACGAGCTGCTTCAGTTGGAGTATGCAGCACAGAAGTCACCTCGCAGGATTAAAGGATTTTCCAAACCTTCAGTTGGACTGTTGGAGCTGCTTCAGGCCAAAACATTTTCCAAACCATGTGAACATGTTATTCTTTTCAAAAATTATAGTTCAGATGTATAA

Protein sequence

>Msa0376900

MALSSCCSFVVGSSNINNPLPSSFPFKFPSLWPSSTQNQKLKMGPLSVSPMGFGTWAWGNQLLWGYQESMDDDLQQVFNTAVENGVNLFDTADSYGTGRFNGQSEKLLGKFIRDFREKKGSRSEIVIATKFAAYPWRLTPGQFVDACRASLDRMQIEQIGIGQLHWSTANYAPFQELALWDGLVAMYDKGLVQAVGVSNYGPKQLLKIHDYLKDRGVPLCSAQVQFSLLSMGEDQLEIKSICDSLGIRVIAYSPLGLGMLTGKYSASKLPTGPRGLLFKQILPGLDPLLSSLRDIANKRRKTMSQVAINWCICKGTIPIPGVKSITQAEENLGALGWRLSSNELLQLEDAAQQSPRRMIQNIFQTRIYFPHNHLKGAFQLPKSIVITLSMRMVTVPSTSAKCICKGTTPIPGVKSIAQAEENLGALGWRLSLDELLQLEYAAQKSPRRIKGFSKPSVGLLELLQAKTFSKPCEHVILFKNYSSDV*