AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1196600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196600 MtrunA17_Chr8g0362351 95.918 392 12 2 1 388 1 392 0.0 769
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196600 AT5G20220.2 62.890 353 118 5 44 386 37 386 3.21e-156 446
Msa1196600 AT5G20220.1 62.890 353 118 5 44 386 37 386 3.21e-156 446
Msa1196600 AT5G20220.4 62.890 353 118 5 44 386 53 402 6.09e-156 445
Msa1196600 AT5G20220.3 70.925 227 62 2 44 268 37 261 5.06e-115 336

Find 128 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCAAAACCCTTGAGTTTC+TGG 0.052618 8_1:+46163868 None:intergenic
TAATGTTGCTTAGTGAAATT+TGG 0.200548 8_1:-46163719 Msa1196600:three_prime_UTR
GAGTGTACCTGGGATGATTT+TGG 0.211736 8_1:+46168276 None:intergenic
AAAGAAATCTTTCATAGTTT+TGG 0.211900 8_1:+46164546 None:intergenic
AGTACCTTTCCATTACATTT+TGG 0.230276 8_1:+46167468 None:intergenic
ACTAATTAGCATTACTTAAC+AGG 0.255394 8_1:+46163769 None:intergenic
ACAGCGAGTGGCTGCTATTA+AGG 0.275494 8_1:-46165499 Msa1196600:intron
TTTGCTAAATAGACCAGTTT+TGG 0.277779 8_1:+46165560 None:intergenic
TGTAGGCTATGTGGCGAAAA+AGG 0.312373 8_1:-46164150 Msa1196600:CDS
GCTCTGGAGATTGTGTTATA+TGG 0.322319 8_1:-46166806 Msa1196600:CDS
ATCAAACCATCCTTCAGTTC+TGG 0.336795 8_1:+46164189 None:intergenic
TGTAAAATATGTCGACAATA+TGG 0.344909 8_1:-46164057 Msa1196600:CDS
GAGGGCATGTCCTTCGGTTA+TGG 0.346475 8_1:+46164034 None:intergenic
TGACGATGAAGTTGACAAAT+TGG 0.351646 8_1:-46165956 Msa1196600:CDS
TCGAGGCCAATAATCTGAAT+TGG 0.365874 8_1:-46163835 Msa1196600:three_prime_UTR
AGTCCTCCGGAGGATCTGTT+TGG 0.369092 8_1:-46168159 Msa1196600:CDS
CAGAGTCTCAATGCCAAAAC+TGG 0.372220 8_1:-46165573 Msa1196600:CDS
CCCTTGAGTTTCTGGAAAGT+AGG 0.379478 8_1:+46163876 None:intergenic
GTGCCTGAAGCGTGGGATCC+TGG 0.381393 8_1:+46165520 None:intergenic
TTATAACTCTCCCATCACTA+TGG 0.402095 8_1:+46164091 None:intergenic
GAAGAACATGCAATAAGTTA+AGG 0.416372 8_1:-46164119 Msa1196600:CDS
CCACCAGGATCCCACGCTTC+AGG 0.416740 8_1:-46165523 Msa1196600:CDS
CTAATCTTCAATCCAACTTC+AGG 0.418320 8_1:+46165880 None:intergenic
TCTTGCTGAAACAGTCCTCT+TGG 0.427492 8_1:+46164579 None:intergenic
ATTGCTTATTCAAACTTCGT+TGG 0.435000 8_1:+46168468 None:intergenic
TTGCTTATTCAAACTTCGTT+GGG 0.439826 8_1:+46168469 None:intergenic
CTGACTTGCCACCAGTGCTC+TGG 0.442348 8_1:-46166822 Msa1196600:CDS
TAACTTGAGGGCATGTCCTT+CGG 0.450194 8_1:+46164028 None:intergenic
GTCCTCCGGAGGATCTGTTT+GGG 0.460836 8_1:-46168158 Msa1196600:CDS
AGTTATTTCAAATAAAAGAA+TGG 0.467754 8_1:-46164010 Msa1196600:CDS
ATGGGTGCTTTGAGGCTTGA+GGG 0.468115 8_1:+46168561 None:intergenic
CACTCGCTGTGCCTGAAGCG+TGG 0.469842 8_1:+46165512 None:intergenic
CAAGAATTCATGAACTTGGT+AGG 0.470403 8_1:+46168438 None:intergenic
TGAAGGATGGTTTGATTGAT+CGG 0.472656 8_1:-46164182 Msa1196600:CDS
GTTATGTCATGGGTGCTTTG+AGG 0.475277 8_1:+46168553 None:intergenic
GGGAAAGATGATGATGATGA+TGG 0.475765 8_1:+46168519 None:intergenic
CACAAAATAGACAGGGGAAG+GGG 0.479884 8_1:+46168597 None:intergenic
TATTGCATGTTCTTCTGTTG+TGG 0.480064 8_1:+46164127 None:intergenic
TTGTCCAAGTTGCCGAGGAA+GGG 0.480555 8_1:-46167541 Msa1196600:CDS
TCGTCATCCTTCACTTTGAG+TGG 0.487889 8_1:+46165973 None:intergenic
CATGGGTGCTTTGAGGCTTG+AGG 0.492973 8_1:+46168560 None:intergenic
TAACCCCTTCCTCGGCAACT+TGG 0.494338 8_1:+46167537 None:intergenic
AAGAATTCATGAACTTGGTA+GGG 0.494858 8_1:+46168439 None:intergenic
TCTCTGATATATTGTCCATT+CGG 0.495846 8_1:+46167570 None:intergenic
TCAGACTGTCCAAAATGTAA+TGG 0.499235 8_1:-46167477 Msa1196600:CDS
CTCTGGAGATTGTGTTATAT+GGG 0.503966 8_1:-46166805 Msa1196600:CDS
CAGTCACCATCTCCTGAAGT+TGG 0.504263 8_1:-46165892 Msa1196600:CDS
ATGTCGATTGTGTCAGAAAG+AGG 0.511471 8_1:-46163962 Msa1196600:CDS
CTTGTCCAAGTTGCCGAGGA+AGG 0.512071 8_1:-46167542 Msa1196600:CDS
GGAGGATCTGTTTGGGCTAG+AGG 0.512278 8_1:-46168151 Msa1196600:CDS
CAACTTCAGGAGATGGTGAC+TGG 0.515872 8_1:+46165893 None:intergenic
TTGGCAAGAATTCATGAACT+TGG 0.518333 8_1:+46168434 None:intergenic
TCCTACTTTCCAGAAACTCA+AGG 0.520528 8_1:-46163877 Msa1196600:three_prime_UTR
AGAGAACCAAGGTCATGGTT+TGG 0.522416 8_1:-46167594 Msa1196600:CDS
TTGATCGGCGATTCACATGT+AGG 0.527264 8_1:-46164167 Msa1196600:CDS
TCTATTCCACATTCTGTACA+AGG 0.527806 8_1:+46167510 None:intergenic
CTAAGCAACATTAAATCTAG+TGG 0.527943 8_1:+46163729 None:intergenic
ACAGTTTAGGTACAGTCCTC+CGG 0.531585 8_1:-46168172 Msa1196600:intron
ACAGGGGAAGGGGATAATGA+TGG 0.531877 8_1:+46168607 None:intergenic
TGTCCAAGTTGCCGAGGAAG+GGG 0.533412 8_1:-46167540 Msa1196600:CDS
TTTGGATGAAACAGAGTGGT+AGG 0.534103 8_1:-46163701 Msa1196600:three_prime_UTR
TTCAATCCAACTTCAGGAGA+TGG 0.534195 8_1:+46165886 None:intergenic
ACTCGCTGTGCCTGAAGCGT+GGG 0.534215 8_1:+46165513 None:intergenic
ACATGTCCTAGTAGAATAGT+TGG 0.534972 8_1:-46163925 Msa1196600:CDS
TTCCATCCCAAAATCATCCC+AGG 0.537995 8_1:-46168283 Msa1196600:intron
GGAAATGTGAGAGAACGAAA+TGG 0.539000 8_1:+46168396 None:intergenic
TCTAGCCCAAACAGATCCTC+CGG 0.541042 8_1:+46168153 None:intergenic
CGTGTGGTCACAAAATAGAC+AGG 0.543327 8_1:+46168589 None:intergenic
AGTGGTAGGAGTCATTCATC+TGG 0.545110 8_1:-46163687 Msa1196600:three_prime_UTR
TGGTTGGTGCAGGAAGGGAA+AGG 0.545712 8_1:+46168337 None:intergenic
AGGATGAAAATGACCTTGCA+TGG 0.545779 8_1:+46164489 None:intergenic
ATGGAGTGTGAATCACTAGT+TGG 0.547078 8_1:+46168415 None:intergenic
AAATGGTATGGTTATGTCAT+GGG 0.547583 8_1:+46168543 None:intergenic
GACAATATGGCCATAACCGA+AGG 0.550578 8_1:-46164044 Msa1196600:CDS
AGAAAGAGGGACACAATAGT+AGG 0.553868 8_1:-46163948 Msa1196600:CDS
AGGTCATGGTTTGGTCCGAA+TGG 0.557253 8_1:-46167585 Msa1196600:CDS
CCTACTTTCCAGAAACTCAA+GGG 0.561754 8_1:-46163876 Msa1196600:three_prime_UTR
TCAGTGCCAACTATTCTACT+AGG 0.563675 8_1:+46163919 None:intergenic
CACAATCTCCAGAGCACTGG+TGG 0.564699 8_1:+46166814 None:intergenic
TTCGGACCAAACCATGACCT+TGG 0.565658 8_1:+46167588 None:intergenic
GTCACAAAATAGACAGGGGA+AGG 0.566289 8_1:+46168595 None:intergenic
TGGTGACTGGTAAACACGCT+TGG 0.567083 8_1:+46165906 None:intergenic
AAAGGATGGTTGGTGCAGGA+AGG 0.569015 8_1:+46168331 None:intergenic
AAGGATGGTTGGTGCAGGAA+GGG 0.570602 8_1:+46168332 None:intergenic
AGGCTTGAGGGTTAAACGTG+TGG 0.573543 8_1:+46168573 None:intergenic
TATACTCCTTGTACAGAATG+TGG 0.574912 8_1:-46167516 Msa1196600:CDS
TAAGGATAAGCCATAGTGAT+GGG 0.578892 8_1:-46164101 Msa1196600:CDS
ACTGTGGACGTGAAGGACAT+AGG 0.580715 8_1:-46164224 Msa1196600:CDS
GAAATGGTATGGTTATGTCA+TGG 0.585240 8_1:+46168542 None:intergenic
GATGATGATGGGAAATGGTA+TGG 0.586700 8_1:+46168531 None:intergenic
ATTGATTGAGCTCTCTCCCA+CGG 0.587172 8_1:+46166762 None:intergenic
ACACTACTGTCCAGAACTGA+AGG 0.588135 8_1:-46164199 Msa1196600:CDS
AGAATTCATGAACTTGGTAG+GGG 0.588183 8_1:+46168440 None:intergenic
AAGGAGTATAACCCCTTCCT+CGG 0.591796 8_1:+46167529 None:intergenic
TTAAGGATAAGCCATAGTGA+TGG 0.593339 8_1:-46164102 Msa1196600:CDS
TAACACAATCTCCAGAGCAC+TGG 0.599406 8_1:+46166811 None:intergenic
ACGAATGAAGATCATCCACC+AGG 0.599645 8_1:-46165538 Msa1196600:CDS
TAGATCTCCACTCAAAGTGA+AGG 0.599759 8_1:-46165980 Msa1196600:CDS
TGTCGATTGTGTCAGAAAGA+GGG 0.600299 8_1:-46163961 Msa1196600:CDS
GGATCTGTTTGGGCTAGAGG+TGG 0.600674 8_1:-46168148 Msa1196600:CDS
GAGCAAAGGATGGTTGGTGC+AGG 0.601060 8_1:+46168327 None:intergenic
AAAAGGAGCATGTCCATGCA+AGG 0.601591 8_1:-46164502 Msa1196600:intron
AAAGGAAGAGATGAATGTTG+AGG 0.601741 8_1:+46168355 None:intergenic
CTTCCTCGGCAACTTGGACA+AGG 0.602368 8_1:+46167543 None:intergenic
AATGTGGAATAGAACGATCT+AGG 0.605176 8_1:-46167500 Msa1196600:CDS
CATCATTGAGTGATGAGCAA+AGG 0.605227 8_1:+46168313 None:intergenic
TCACAAAATAGACAGGGGAA+GGG 0.607544 8_1:+46168596 None:intergenic
TGTCAAAACTGTGGACGTGA+AGG 0.607699 8_1:-46164231 Msa1196600:CDS
CTGTCCAAAATGTAATGGAA+AGG 0.611504 8_1:-46167472 Msa1196600:intron
CGATTCACATGTAGGCTATG+TGG 0.611826 8_1:-46164159 Msa1196600:CDS
GTCGATTGATGAACGACCGT+GGG 0.613149 8_1:-46166778 Msa1196600:CDS
TAGAGGTGGAATTCAAGCCA+AGG 0.619292 8_1:-46168134 Msa1196600:intron
AGTGATGAGCAAAGGATGGT+TGG 0.622481 8_1:+46168321 None:intergenic
AGTCGATTGATGAACGACCG+TGG 0.622613 8_1:-46166779 Msa1196600:CDS
ATACAAGAGAACCAAGGTCA+TGG 0.626526 8_1:-46167599 Msa1196600:CDS
TACTGTCCAGAACTGAAGGA+TGG 0.635638 8_1:-46164195 Msa1196600:CDS
CTACCTTGTCCAAGTTGCCG+AGG 0.637462 8_1:-46167546 Msa1196600:CDS
GTGTGGTCACAAAATAGACA+GGG 0.666844 8_1:+46168590 None:intergenic
GAAATTTGGATGAAACAGAG+TGG 0.672860 8_1:-46163705 Msa1196600:three_prime_UTR
CCTGAAGCGTGGGATCCTGG+TGG 0.677351 8_1:+46165523 None:intergenic
AAGAGATGAATGTTGAGGTG+AGG 0.680395 8_1:+46168360 None:intergenic
GATGAATGCAGAAAGCCAAG+AGG 0.685841 8_1:-46164594 Msa1196600:intron
AGCCCAAACAGATCCTCCGG+AGG 0.688257 8_1:+46168156 None:intergenic
AAATTCTATTGTCAAAACTG+TGG 0.691239 8_1:-46164240 Msa1196600:CDS
ATTGAGTGATGAGCAAAGGA+TGG 0.693000 8_1:+46168317 None:intergenic
TTTGAACATATATCTCATCG+AGG 0.722344 8_1:-46163852 Msa1196600:three_prime_UTR
ACTCTCATACAAGAGAACCA+AGG 0.725787 8_1:-46167605 Msa1196600:CDS
TGTGGTCACAAAATAGACAG+GGG 0.755024 8_1:+46168591 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTCATTATAAATTATAG+TGG - chr8_1:46164404-46164423 Msa1196600:intron 15.0%
!! TGGCATTATTATTATTAAAA+TGG - chr8_1:46164424-46164443 Msa1196600:intron 15.0%
!! GGCATTATTATTATTAAAAT+GGG - chr8_1:46164425-46164444 Msa1196600:intron 15.0%
!! GCATTATTATTATTAAAATG+GGG - chr8_1:46164426-46164445 Msa1196600:intron 15.0%
!! AAATGAAAAAAAGGAAAAAA+GGG + chr8_1:46165426-46165445 None:intergenic 15.0%
!!! AAATCCTGTTTTTAATAAAA+GGG + chr8_1:46166634-46166653 None:intergenic 15.0%
!!! TAAATCCTGTTTTTAATAAA+AGG + chr8_1:46166635-46166654 None:intergenic 15.0%
!!! CTATGATTTTAGTTTTAATT+AGG - chr8_1:46167395-46167414 Msa1196600:intron 15.0%
!!! TTTTATTTGAAATAACTTGA+GGG + chr8_1:46168267-46168286 None:intergenic 15.0%
!!! AGTTATTTCAAATAAAAGAA+TGG - chr8_1:46168270-46168289 Msa1196600:intron 15.0%
!! GTTAGAAGTTTAAACAATAT+GGG + chr8_1:46164059-46164078 None:intergenic 20.0%
!! TGTTAGAAGTTTAAACAATA+TGG + chr8_1:46164060-46164079 None:intergenic 20.0%
!! TTGTTTAAACTTCTAACATT+TGG - chr8_1:46164062-46164081 Msa1196600:CDS 20.0%
!! ATATAATAAAATTGAGACCT+TGG + chr8_1:46164166-46164185 None:intergenic 20.0%
!! ATCACAAATAATGAGTTTAA+TGG - chr8_1:46164222-46164241 Msa1196600:CDS 20.0%
!! TGTTACAATATATGCTTATA+TGG + chr8_1:46164308-46164327 None:intergenic 20.0%
!!! AAAACACAATTTTTTCAACT+TGG - chr8_1:46164866-46164885 Msa1196600:intron 20.0%
!!! TTACAATATAACTGTTTTAG+CGG - chr8_1:46165079-46165098 Msa1196600:intron 20.0%
!! TCACAATTAAATTAAGTCTA+TGG + chr8_1:46165195-46165214 None:intergenic 20.0%
!! CAAATGAAAAAAAGGAAAAA+AGG + chr8_1:46165427-46165446 None:intergenic 20.0%
!! TAACATGAAAATATTGTGTT+AGG + chr8_1:46165866-46165885 None:intergenic 20.0%
!!! AACAACATTGATTATGATTA+TGG + chr8_1:46165904-46165923 None:intergenic 20.0%
!!! TAGTTTTAGAAAAATTCTTG+TGG - chr8_1:46165985-46166004 Msa1196600:intron 20.0%
!!! AGAAATTTTATGACATCATA+AGG + chr8_1:46166137-46166156 None:intergenic 20.0%
!! AATACATAATATTTCGTCAT+TGG - chr8_1:46166256-46166275 Msa1196600:intron 20.0%
!! CATATCAACATGTTTATAAA+TGG + chr8_1:46167120-46167139 None:intergenic 20.0%
!! TTTGATATCACACATATATT+TGG + chr8_1:46167155-46167174 None:intergenic 20.0%
!! GATAAACAGAATATCTTTAA+AGG - chr8_1:46167269-46167288 Msa1196600:intron 20.0%
!!! ATTTTAGTTTTAATTAGGCT+AGG - chr8_1:46167400-46167419 Msa1196600:intron 20.0%
!!! TTTTAGTTTTAATTAGGCTA+GGG - chr8_1:46167401-46167420 Msa1196600:intron 20.0%
!!! AAAGAAATCTTTCATAGTTT+TGG + chr8_1:46167737-46167756 None:intergenic 20.0%
!! ACTCAAATGTTAAAATAAAC+AGG + chr8_1:46167826-46167845 None:intergenic 20.0%
!!! TGTTTATTTTAACATTTGAG+TGG - chr8_1:46167825-46167844 Msa1196600:intron 20.0%
!!! CTTTTATTTGAAATAACTTG+AGG + chr8_1:46168268-46168287 None:intergenic 20.0%
!! AAAAAGAAGAACACATGTTT+TGG + chr8_1:46163647-46163666 None:intergenic 25.0%
!!! TGATGTTTTTGTAACAGTTT+AGG - chr8_1:46164095-46164114 Msa1196600:CDS 25.0%
! ACAAATAATGAGTTTAATGG+AGG - chr8_1:46164225-46164244 Msa1196600:CDS 25.0%
! TCCAATAAAATTTGAGAAAC+CGG + chr8_1:46164342-46164361 None:intergenic 25.0%
!! GAAATTTTCACAATCTTCAT+TGG + chr8_1:46164536-46164555 None:intergenic 25.0%
! AGATTGTGAAAATTTCTAAC+TGG - chr8_1:46164540-46164559 Msa1196600:CDS 25.0%
!! ATTATGATCTGAAGTTGAAA+AGG - chr8_1:46164625-46164644 Msa1196600:intron 25.0%
! CTTTCCTGAAATAAAAATTG+TGG + chr8_1:46164652-46164671 None:intergenic 25.0%
! TATCTTGACAGAAATACTAT+AGG + chr8_1:46165009-46165028 None:intergenic 25.0%
! GTCAAGATATCTTGAAATTA+AGG - chr8_1:46165020-46165039 Msa1196600:intron 25.0%
! CTGAATATGAAATTTACACT+AGG - chr8_1:46165275-46165294 Msa1196600:intron 25.0%
! ATATGAAATTTACACTAGGA+TGG - chr8_1:46165279-46165298 Msa1196600:intron 25.0%
!! TGCTTAGTATTTTCCTATAT+TGG - chr8_1:46165353-46165372 Msa1196600:intron 25.0%
! TTATCAACTACTACCAATAT+AGG + chr8_1:46165369-46165388 None:intergenic 25.0%
!!! TTCCTTTTTTTCATTTGAAC+AGG - chr8_1:46165430-46165449 Msa1196600:intron 25.0%
!!! TCCTTTTTTTCATTTGAACA+GGG - chr8_1:46165431-46165450 Msa1196600:intron 25.0%
!! ATTATCTTTTCATCTTCTTG+TGG - chr8_1:46165640-46165659 Msa1196600:intron 25.0%
! TTGGTAAAATATAGGAATGA+GGG + chr8_1:46165768-46165787 None:intergenic 25.0%
! ATTGGTAAAATATAGGAATG+AGG + chr8_1:46165769-46165788 None:intergenic 25.0%
! AGGTGATATTGGTAAAATAT+AGG + chr8_1:46165776-46165795 None:intergenic 25.0%
! TTTCATGTTAATATACGAGT+AGG - chr8_1:46165876-46165895 Msa1196600:CDS 25.0%
!! ATTAATTTTCTTCTGCAAGA+AGG + chr8_1:46165929-46165948 None:intergenic 25.0%
! TAGTAAGATCTAAACTAAGT+AGG + chr8_1:46165955-46165974 None:intergenic 25.0%
! TACGATAGTCATTAACATAT+TGG - chr8_1:46166158-46166177 Msa1196600:intron 25.0%
!! TTGCTGCTTAATCTTAATTA+TGG - chr8_1:46166442-46166461 Msa1196600:intron 25.0%
!!! TAACTTTTTCATGTTATGCA+TGG - chr8_1:46166520-46166539 Msa1196600:intron 25.0%
! AAGTGTTTATTGTAGTATAG+AGG - chr8_1:46166556-46166575 Msa1196600:intron 25.0%
! AATAAAAGGGAAAGAGAAAA+CGG + chr8_1:46166621-46166640 None:intergenic 25.0%
!! CTTTCCCTTTTATTAAAAAC+AGG - chr8_1:46166627-46166646 Msa1196600:intron 25.0%
!! TATTTTCTTACATGCAGTTT+AGG - chr8_1:46167047-46167066 Msa1196600:intron 25.0%
!! TTAGGAGTATACATTCAATT+TGG - chr8_1:46167065-46167084 Msa1196600:intron 25.0%
! TATAATGTCATGTCTATCTT+TGG + chr8_1:46167095-46167114 None:intergenic 25.0%
!! TTACACTTTTGTCATCAAAT+TGG - chr8_1:46167187-46167206 Msa1196600:intron 25.0%
! TAGAGTGTATATATTCATGT+TGG + chr8_1:46167296-46167315 None:intergenic 25.0%
! AACACATGTAGAACAAAAAA+AGG + chr8_1:46167459-46167478 None:intergenic 25.0%
! CACAGAAAAGAAAATTATTC+AGG + chr8_1:46167541-46167560 None:intergenic 25.0%
! TTCTGTGAGCATAAATTATT+TGG - chr8_1:46167554-46167573 Msa1196600:CDS 25.0%
!! AAATAAACAGGCTATTTCAA+AGG + chr8_1:46167814-46167833 None:intergenic 25.0%
! AAATTCTATTGTCAAAACTG+TGG - chr8_1:46168040-46168059 Msa1196600:intron 25.0%
! TGTAAAATATGTCGACAATA+TGG - chr8_1:46168223-46168242 Msa1196600:intron 25.0%
!! GATTTTCCAATTCAGATTAT+TGG + chr8_1:46168454-46168473 None:intergenic 25.0%
! ACTAATTAGCATTACTTAAC+AGG + chr8_1:46168514-46168533 None:intergenic 25.0%
!! TAATGTTGCTTAGTGAAATT+TGG - chr8_1:46168561-46168580 Msa1196600:five_prime_UTR 25.0%
AAATGGTATGGTTATGTCAT+GGG + chr8_1:46163740-46163759 None:intergenic 30.0%
!!! CGTGTTTGTTTTTTCAACAA+GGG + chr8_1:46163784-46163803 None:intergenic 30.0%
TTGCTTATTCAAACTTCGTT+GGG + chr8_1:46163814-46163833 None:intergenic 30.0%
ATTGCTTATTCAAACTTCGT+TGG + chr8_1:46163815-46163834 None:intergenic 30.0%
AAGAATTCATGAACTTGGTA+GGG + chr8_1:46163844-46163863 None:intergenic 30.0%
CAGTAAAAAAGAGTAGATAG+TGG + chr8_1:46164036-46164055 None:intergenic 30.0%
TATATGCTTATATGGCAAGA+TGG + chr8_1:46164300-46164319 None:intergenic 30.0%
AATAAAATTTGAGAAACCGG+TGG + chr8_1:46164339-46164358 None:intergenic 30.0%
!! ACCGGTTTCTCAAATTTTAT+TGG - chr8_1:46164338-46164357 Msa1196600:intron 30.0%
ATGAGAAAAGAGAACATGTA+CGG + chr8_1:46164392-46164411 None:intergenic 30.0%
!! AGGTCCACAATTTTTATTTC+AGG - chr8_1:46164645-46164664 Msa1196600:intron 30.0%
TCTCTGATATATTGTCCATT+CGG + chr8_1:46164713-46164732 None:intergenic 30.0%
! AGTACCTTTCCATTACATTT+TGG + chr8_1:46164815-46164834 None:intergenic 30.0%
!! TTCAACTTGGTCTTATTAGA+AGG - chr8_1:46164879-46164898 Msa1196600:intron 30.0%
!! TCAACTTGGTCTTATTAGAA+GGG - chr8_1:46164880-46164899 Msa1196600:intron 30.0%
! TAACTAACCAAGATTTTCAG+AGG + chr8_1:46164950-46164969 None:intergenic 30.0%
ATTTCTGTATATGCATGTAC+TGG - chr8_1:46164979-46164998 Msa1196600:intron 30.0%
!!! ATATAACTGTTTTAGCGGAT+TGG - chr8_1:46165084-46165103 Msa1196600:intron 30.0%
CTAACATCTATTTGCTTCTA+AGG - chr8_1:46165150-46165169 Msa1196600:intron 30.0%
ACCCTGTTCAAATGAAAAAA+AGG + chr8_1:46165435-46165454 None:intergenic 30.0%
TGGTAAAATATAGGAATGAG+GGG + chr8_1:46165767-46165786 None:intergenic 30.0%
!!! CGTCATTGGTTTTACTATTT+TGG - chr8_1:46166270-46166289 Msa1196600:intron 30.0%
! TTTGCTAAATAGACCAGTTT+TGG + chr8_1:46166723-46166742 None:intergenic 30.0%
!! GCACGTCAAAAAGTTATTTT+TGG + chr8_1:46167008-46167027 None:intergenic 30.0%
TCACACATATATTTGGACTT+TGG + chr8_1:46167148-46167167 None:intergenic 30.0%
ATTAAATTTCTTTCCAGTCC+TGG - chr8_1:46167336-46167355 Msa1196600:intron 30.0%
TTAAATTTCTTTCCAGTCCT+GGG - chr8_1:46167337-46167356 Msa1196600:intron 30.0%
! CATTTGAGTTTGATTAAGCT+AGG + chr8_1:46167364-46167383 None:intergenic 30.0%
CTAGCTTAATCAAACTCAAA+TGG - chr8_1:46167362-46167381 Msa1196600:intron 30.0%
!! TTTTAATTAGGCTAGGGAAT+AGG - chr8_1:46167407-46167426 Msa1196600:intron 30.0%
TTTAATTAGGCTAGGGAATA+GGG - chr8_1:46167408-46167427 Msa1196600:intron 30.0%
!! ACAAAAAAAGGTATTTGCTC+CGG + chr8_1:46167447-46167466 None:intergenic 30.0%
ATAAGCACACATAAATGACA+TGG - chr8_1:46167591-46167610 Msa1196600:CDS 30.0%
ATCCAATAAACCGTGAAAAA+AGG - chr8_1:46167761-46167780 Msa1196600:intron 30.0%
CTGATTGAAGTGTAAGTAAA+TGG + chr8_1:46167965-46167984 None:intergenic 30.0%
CATTTACTTACACTTCAATC+AGG - chr8_1:46167963-46167982 Msa1196600:intron 30.0%
TTTCATTCCTATTCTAATGC+AGG - chr8_1:46168013-46168032 Msa1196600:intron 30.0%
GAAGAACATGCAATAAGTTA+AGG - chr8_1:46168161-46168180 Msa1196600:CDS 30.0%
TTTGAACATATATCTCATCG+AGG - chr8_1:46168428-46168447 Msa1196600:CDS 30.0%
CTAAGCAACATTAAATCTAG+TGG + chr8_1:46168554-46168573 None:intergenic 30.0%
GAAATGGTATGGTTATGTCA+TGG + chr8_1:46163741-46163760 None:intergenic 35.0%
!! ATGATGATGATGATGGGAAA+TGG + chr8_1:46163757-46163776 None:intergenic 35.0%
! GGAAAGATGATGATGATGAT+GGG + chr8_1:46163763-46163782 None:intergenic 35.0%
!!! GCGTGTTTGTTTTTTCAACA+AGG + chr8_1:46163785-46163804 None:intergenic 35.0%
AGAATTCATGAACTTGGTAG+GGG + chr8_1:46163843-46163862 None:intergenic 35.0%
CAAGAATTCATGAACTTGGT+AGG + chr8_1:46163845-46163864 None:intergenic 35.0%
TTGGCAAGAATTCATGAACT+TGG + chr8_1:46163849-46163868 None:intergenic 35.0%
AAAGGAAGAGATGAATGTTG+AGG + chr8_1:46163928-46163947 None:intergenic 35.0%
! GTTTAATGGAGGTACATAGA+CGG - chr8_1:46164236-46164255 Msa1196600:CDS 35.0%
TATACTCCTTGTACAGAATG+TGG - chr8_1:46164764-46164783 Msa1196600:intron 35.0%
TCTATTCCACATTCTGTACA+AGG + chr8_1:46164773-46164792 None:intergenic 35.0%
AATGTGGAATAGAACGATCT+AGG - chr8_1:46164780-46164799 Msa1196600:intron 35.0%
TCAGACTGTCCAAAATGTAA+TGG - chr8_1:46164803-46164822 Msa1196600:intron 35.0%
! CTGTCCAAAATGTAATGGAA+AGG - chr8_1:46164808-46164827 Msa1196600:intron 35.0%
! CAAGATTTTCAGAGGCAATA+TGG + chr8_1:46164942-46164961 None:intergenic 35.0%
! CATATTGCCTCTGAAAATCT+TGG - chr8_1:46164940-46164959 Msa1196600:intron 35.0%
! GGATGGACATTTAGAGTTAA+TGG - chr8_1:46165296-46165315 Msa1196600:intron 35.0%
! CTCTGGAGATTGTGTTATAT+GGG - chr8_1:46165475-46165494 Msa1196600:intron 35.0%
! ACGTCTGAACAACATTTTCA+AGG + chr8_1:46165599-46165618 None:intergenic 35.0%
ATGTGAATGTGGGTCAAAAT+AGG + chr8_1:46165836-46165855 None:intergenic 35.0%
TTTGACCCACATTCACATAT+CGG - chr8_1:46165838-46165857 Msa1196600:intron 35.0%
AATAGAGATGCAAAAACACC+TGG - chr8_1:46166045-46166064 Msa1196600:intron 35.0%
CACGATGTTAAATCTTTGTG+AGG - chr8_1:46166107-46166126 Msa1196600:intron 35.0%
TGACGATGAAGTTGACAAAT+TGG - chr8_1:46166324-46166343 Msa1196600:intron 35.0%
CTAATCTTCAATCCAACTTC+AGG + chr8_1:46166403-46166422 None:intergenic 35.0%
CACATATATTTGGACTTTGG+AGG + chr8_1:46167145-46167164 None:intergenic 35.0%
! ATAGGGCGTCTTAAAAAAAC+CGG - chr8_1:46167425-46167444 Msa1196600:intron 35.0%
!!! CTCCTTTTTTCACGGTTTAT+TGG + chr8_1:46167766-46167785 None:intergenic 35.0%
! TTTCTCTTGTTTACTAGTCC+AGG + chr8_1:46167939-46167958 None:intergenic 35.0%
TTTCACACCTGCATTAGAAT+AGG + chr8_1:46168023-46168042 None:intergenic 35.0%
TGAAGGATGGTTTGATTGAT+CGG - chr8_1:46168098-46168117 Msa1196600:intron 35.0%
TATTGCATGTTCTTCTGTTG+TGG + chr8_1:46168156-46168175 None:intergenic 35.0%
TTAAGGATAAGCCATAGTGA+TGG - chr8_1:46168178-46168197 Msa1196600:intron 35.0%
TAAGGATAAGCCATAGTGAT+GGG - chr8_1:46168179-46168198 Msa1196600:intron 35.0%
TTATAACTCTCCCATCACTA+TGG + chr8_1:46168192-46168211 None:intergenic 35.0%
ACATGTCCTAGTAGAATAGT+TGG - chr8_1:46168355-46168374 Msa1196600:CDS 35.0%
GAAATTTGGATGAAACAGAG+TGG - chr8_1:46168575-46168594 Msa1196600:five_prime_UTR 35.0%
TCACAAAATAGACAGGGGAA+GGG + chr8_1:46163687-46163706 None:intergenic 40.0%
TGTGGTCACAAAATAGACAG+GGG + chr8_1:46163692-46163711 None:intergenic 40.0%
GTGTGGTCACAAAATAGACA+GGG + chr8_1:46163693-46163712 None:intergenic 40.0%
!! GATGATGATGGGAAATGGTA+TGG + chr8_1:46163752-46163771 None:intergenic 40.0%
! GGGAAAGATGATGATGATGA+TGG + chr8_1:46163764-46163783 None:intergenic 40.0%
ATGGAGTGTGAATCACTAGT+TGG + chr8_1:46163868-46163887 None:intergenic 40.0%
GGAAATGTGAGAGAACGAAA+TGG + chr8_1:46163887-46163906 None:intergenic 40.0%
AAGAGATGAATGTTGAGGTG+AGG + chr8_1:46163923-46163942 None:intergenic 40.0%
ATTGAGTGATGAGCAAAGGA+TGG + chr8_1:46163966-46163985 None:intergenic 40.0%
CATCATTGAGTGATGAGCAA+AGG + chr8_1:46163970-46163989 None:intergenic 40.0%
!!! GGATGATTTTGGGATGGAAA+AGG + chr8_1:46163996-46164015 None:intergenic 40.0%
! AGTGTACCTGGGATGATTTT+GGG + chr8_1:46164006-46164025 None:intergenic 40.0%
! GTGGAAAAAAGAGTGTACCT+GGG + chr8_1:46164017-46164036 None:intergenic 40.0%
! AGTGGAAAAAAGAGTGTACC+TGG + chr8_1:46164018-46164037 None:intergenic 40.0%
TGCTTATATGGCAAGATGGT+CGG + chr8_1:46164296-46164315 None:intergenic 40.0%
AAAATTTGAGAAACCGGTGG+TGG + chr8_1:46164336-46164355 None:intergenic 40.0%
!! AAAATGGGGATTAGCTCAGA+TGG - chr8_1:46164440-46164459 Msa1196600:intron 40.0%
ACTCTCATACAAGAGAACCA+AGG - chr8_1:46164675-46164694 Msa1196600:intron 40.0%
ATACAAGAGAACCAAGGTCA+TGG - chr8_1:46164681-46164700 Msa1196600:intron 40.0%
!! GCTCTGGAGATTGTGTTATA+TGG - chr8_1:46165474-46165493 Msa1196600:intron 40.0%
GACTTACAGAGTACAATGCA+AGG + chr8_1:46165693-46165712 None:intergenic 40.0%
! TAATGATGGTGACATGGGAA+AGG + chr8_1:46165738-46165757 None:intergenic 40.0%
AATATAGGAATGAGGGGTGA+GGG + chr8_1:46165761-46165780 None:intergenic 40.0%
AAATATAGGAATGAGGGGTG+AGG + chr8_1:46165762-46165781 None:intergenic 40.0%
TTGACCCACATTCACATATC+GGG - chr8_1:46165839-46165858 Msa1196600:intron 40.0%
AGATGCAAAAACACCTGGAT+AGG - chr8_1:46166050-46166069 Msa1196600:intron 40.0%
GATGCAAAAACACCTGGATA+GGG - chr8_1:46166051-46166070 Msa1196600:intron 40.0%
TAGATCTCCACTCAAAGTGA+AGG - chr8_1:46166300-46166319 Msa1196600:intron 40.0%
TTCAATCCAACTTCAGGAGA+TGG + chr8_1:46166397-46166416 None:intergenic 40.0%
ACTTGTACTTCGTTTGAGCT+TGG - chr8_1:46166818-46166837 Msa1196600:CDS 40.0%
GTCATCAAATTGGTACTGCA+AGG - chr8_1:46167197-46167216 Msa1196600:intron 40.0%
!!! TGGACATGCTCCTTTTTTCA+CGG + chr8_1:46167774-46167793 None:intergenic 40.0%
AGGATGAAAATGACCTTGCA+TGG + chr8_1:46167794-46167813 None:intergenic 40.0%
ACTTACACTTCAATCAGGCA+TGG - chr8_1:46167968-46167987 Msa1196600:intron 40.0%
ATCAAACCATCCTTCAGTTC+TGG + chr8_1:46168094-46168113 None:intergenic 40.0%
! ATGTCGATTGTGTCAGAAAG+AGG - chr8_1:46168318-46168337 Msa1196600:CDS 40.0%
! TGTCGATTGTGTCAGAAAGA+GGG - chr8_1:46168319-46168338 Msa1196600:CDS 40.0%
AGAAAGAGGGACACAATAGT+AGG - chr8_1:46168332-46168351 Msa1196600:CDS 40.0%
TCAGTGCCAACTATTCTACT+AGG + chr8_1:46168364-46168383 None:intergenic 40.0%
TCCTACTTTCCAGAAACTCA+AGG - chr8_1:46168403-46168422 Msa1196600:CDS 40.0%
CCTACTTTCCAGAAACTCAA+GGG - chr8_1:46168404-46168423 Msa1196600:CDS 40.0%
GTTCAAAACCCTTGAGTTTC+TGG + chr8_1:46168415-46168434 None:intergenic 40.0%
TCGAGGCCAATAATCTGAAT+TGG - chr8_1:46168445-46168464 Msa1196600:exon 40.0%
TTTGGATGAAACAGAGTGGT+AGG - chr8_1:46168579-46168598 Msa1196600:five_prime_UTR 40.0%
CACAAAATAGACAGGGGAAG+GGG + chr8_1:46163686-46163705 None:intergenic 45.0%
GTCACAAAATAGACAGGGGA+AGG + chr8_1:46163688-46163707 None:intergenic 45.0%
CGTGTGGTCACAAAATAGAC+AGG + chr8_1:46163694-46163713 None:intergenic 45.0%
GTTATGTCATGGGTGCTTTG+AGG + chr8_1:46163730-46163749 None:intergenic 45.0%
!! AGGTGAGGTGTTTTTGTGCA+TGG + chr8_1:46163908-46163927 None:intergenic 45.0%
AGTGATGAGCAAAGGATGGT+TGG + chr8_1:46163962-46163981 None:intergenic 45.0%
TTCCATCCCAAAATCATCCC+AGG - chr8_1:46163997-46164016 Msa1196600:CDS 45.0%
!! TACCTGGGATGATTTTGGGA+TGG + chr8_1:46164002-46164021 None:intergenic 45.0%
! GAGTGTACCTGGGATGATTT+TGG + chr8_1:46164007-46164026 None:intergenic 45.0%
ACAGTTTAGGTACAGTCCTC+CGG - chr8_1:46164108-46164127 Msa1196600:CDS 45.0%
TAGAGGTGGAATTCAAGCCA+AGG - chr8_1:46164146-46164165 Msa1196600:CDS 45.0%
TTGTAACAGCTAACCACCAC+CGG - chr8_1:46164320-46164339 Msa1196600:intron 45.0%
AGAGAACCAAGGTCATGGTT+TGG - chr8_1:46164686-46164705 Msa1196600:intron 45.0%
! AAGGAGTATAACCCCTTCCT+CGG + chr8_1:46164754-46164773 None:intergenic 45.0%
TAACACAATCTCCAGAGCAC+TGG + chr8_1:46165472-46165491 None:intergenic 45.0%
ATTGATTGAGCTCTCTCCCA+CGG + chr8_1:46165521-46165540 None:intergenic 45.0%
! GAGGGTAATGATGGTGACAT+GGG + chr8_1:46165743-46165762 None:intergenic 45.0%
! TGAGGGTAATGATGGTGACA+TGG + chr8_1:46165744-46165763 None:intergenic 45.0%
TGTTATGCGGGAGGTGATAT+TGG + chr8_1:46165787-46165806 None:intergenic 45.0%
AATATCACCTCCCGCATAAC+AGG - chr8_1:46165786-46165805 Msa1196600:intron 45.0%
ATTTGCCCAAGCCTGTTATG+CGG + chr8_1:46165800-46165819 None:intergenic 45.0%
AGGACCCGATATGTGAATGT+GGG + chr8_1:46165846-46165865 None:intergenic 45.0%
TAGGACCCGATATGTGAATG+TGG + chr8_1:46165847-46165866 None:intergenic 45.0%
AAACTAGAAGCTCCCTATCC+AGG + chr8_1:46166066-46166085 None:intergenic 45.0%
TCGTCATCCTTCACTTTGAG+TGG + chr8_1:46166310-46166329 None:intergenic 45.0%
TGTTATGCATGGACAGACTG+TGG - chr8_1:46166531-46166550 Msa1196600:intron 45.0%
CAGAGTCTCAATGCCAAAAC+TGG - chr8_1:46166707-46166726 Msa1196600:intron 45.0%
ACGAATGAAGATCATCCACC+AGG - chr8_1:46166742-46166761 Msa1196600:intron 45.0%
GTTTGATTAAGCTAGGTCCC+AGG + chr8_1:46167357-46167376 None:intergenic 45.0%
GATGAATGCAGAAAGCCAAG+AGG - chr8_1:46167686-46167705 Msa1196600:intron 45.0%
TCTTGCTGAAACAGTCCTCT+TGG + chr8_1:46167704-46167723 None:intergenic 45.0%
! AAAAGGAGCATGTCCATGCA+AGG - chr8_1:46167778-46167797 Msa1196600:intron 45.0%
ACATTTGAGTGGTCTCGAAC+AGG - chr8_1:46167836-46167855 Msa1196600:intron 45.0%
CTAGTAGTCCATGAGATGTC+CGG - chr8_1:46167862-46167881 Msa1196600:intron 45.0%
GACCTTGTAACGTCAAGTGA+CGG - chr8_1:46167901-46167920 Msa1196600:intron 45.0%
ACCTTGTAACGTCAAGTGAC+GGG - chr8_1:46167902-46167921 Msa1196600:intron 45.0%
! CTCTTGTTTACTAGTCCAGG+AGG + chr8_1:46167936-46167955 None:intergenic 45.0%
TGTCAAAACTGTGGACGTGA+AGG - chr8_1:46168049-46168068 Msa1196600:intron 45.0%
ACACTACTGTCCAGAACTGA+AGG - chr8_1:46168081-46168100 Msa1196600:intron 45.0%
TACTGTCCAGAACTGAAGGA+TGG - chr8_1:46168085-46168104 Msa1196600:intron 45.0%
TTGATCGGCGATTCACATGT+AGG - chr8_1:46168113-46168132 Msa1196600:intron 45.0%
GACAATATGGCCATAACCGA+AGG - chr8_1:46168236-46168255 Msa1196600:intron 45.0%
! TAACTTGAGGGCATGTCCTT+CGG + chr8_1:46168255-46168274 None:intergenic 45.0%
! CCCTTGAGTTTCTGGAAAGT+AGG + chr8_1:46168407-46168426 None:intergenic 45.0%
AGTGGTAGGAGTCATTCATC+TGG - chr8_1:46168593-46168612 Msa1196600:five_prime_UTR 45.0%
ACAGGGGAAGGGGATAATGA+TGG + chr8_1:46163676-46163695 None:intergenic 50.0%
AGGCTTGAGGGTTAAACGTG+TGG + chr8_1:46163710-46163729 None:intergenic 50.0%
!! ATGGGTGCTTTGAGGCTTGA+GGG + chr8_1:46163722-46163741 None:intergenic 50.0%
! AAGGATGGTTGGTGCAGGAA+GGG + chr8_1:46163951-46163970 None:intergenic 50.0%
! AAAGGATGGTTGGTGCAGGA+AGG + chr8_1:46163952-46163971 None:intergenic 50.0%
TCTAGCCCAAACAGATCCTC+CGG + chr8_1:46164130-46164149 None:intergenic 50.0%
TTCGGACCAAACCATGACCT+TGG + chr8_1:46164695-46164714 None:intergenic 50.0%
!! AGGTCATGGTTTGGTCCGAA+TGG - chr8_1:46164695-46164714 Msa1196600:intron 50.0%
TTGTCCAAGTTGCCGAGGAA+GGG - chr8_1:46164739-46164758 Msa1196600:intron 50.0%
AGTCGATTGATGAACGACCG+TGG - chr8_1:46165501-46165520 Msa1196600:CDS 50.0%
GTCGATTGATGAACGACCGT+GGG - chr8_1:46165502-46165521 Msa1196600:CDS 50.0%
ATGAGGGGTGAGGGTAATGA+TGG + chr8_1:46165752-46165771 None:intergenic 50.0%
TTTGCCCAAGCCTGTTATGC+GGG + chr8_1:46165799-46165818 None:intergenic 50.0%
TGGTGACTGGTAAACACGCT+TGG + chr8_1:46166377-46166396 None:intergenic 50.0%
CAACTTCAGGAGATGGTGAC+TGG + chr8_1:46166390-46166409 None:intergenic 50.0%
CAGTCACCATCTCCTGAAGT+TGG - chr8_1:46166388-46166407 Msa1196600:intron 50.0%
ACAGCGAGTGGCTGCTATTA+AGG - chr8_1:46166781-46166800 Msa1196600:CDS 50.0%
ATTAAGCTAGGTCCCAGGAC+TGG + chr8_1:46167352-46167371 None:intergenic 50.0%
CCTTGTAACGTCAAGTGACG+GGG - chr8_1:46167903-46167922 Msa1196600:intron 50.0%
ACTGTGGACGTGAAGGACAT+AGG - chr8_1:46168056-46168075 Msa1196600:intron 50.0%
!! CATGGGTGCTTTGAGGCTTG+AGG + chr8_1:46163723-46163742 None:intergenic 55.0%
! TGGTTGGTGCAGGAAGGGAA+AGG + chr8_1:46163946-46163965 None:intergenic 55.0%
! GAGCAAAGGATGGTTGGTGC+AGG + chr8_1:46163956-46163975 None:intergenic 55.0%
GTTTAGGTACAGTCCTCCGG+AGG - chr8_1:46164111-46164130 Msa1196600:CDS 55.0%
AGTCCTCCGGAGGATCTGTT+TGG - chr8_1:46164121-46164140 Msa1196600:CDS 55.0%
GTCCTCCGGAGGATCTGTTT+GGG - chr8_1:46164122-46164141 Msa1196600:CDS 55.0%
! GGAGGATCTGTTTGGGCTAG+AGG - chr8_1:46164129-46164148 Msa1196600:CDS 55.0%
! GGATCTGTTTGGGCTAGAGG+TGG - chr8_1:46164132-46164151 Msa1196600:CDS 55.0%
CGCTTAGCATGCGAGAGGTA+CGG - chr8_1:46164472-46164491 Msa1196600:intron 55.0%
! GCTTAGCATGCGAGAGGTAC+GGG - chr8_1:46164473-46164492 Msa1196600:intron 55.0%
! CTTAGCATGCGAGAGGTACG+GGG - chr8_1:46164474-46164493 Msa1196600:intron 55.0%
CTACCTTGTCCAAGTTGCCG+AGG - chr8_1:46164734-46164753 Msa1196600:intron 55.0%
CTTCCTCGGCAACTTGGACA+AGG + chr8_1:46164740-46164759 None:intergenic 55.0%
CTTGTCCAAGTTGCCGAGGA+AGG - chr8_1:46164738-46164757 Msa1196600:intron 55.0%
TGTCCAAGTTGCCGAGGAAG+GGG - chr8_1:46164740-46164759 Msa1196600:intron 55.0%
TAACCCCTTCCTCGGCAACT+TGG + chr8_1:46164746-46164765 None:intergenic 55.0%
!! CACAATCTCCAGAGCACTGG+TGG + chr8_1:46165469-46165488 None:intergenic 55.0%
GTGACATGGGAAAGGCGAAG+GGG + chr8_1:46165730-46165749 None:intergenic 55.0%
GGTGACATGGGAAAGGCGAA+GGG + chr8_1:46165731-46165750 None:intergenic 55.0%
TGGTGACATGGGAAAGGCGA+AGG + chr8_1:46165732-46165751 None:intergenic 55.0%
ACCTCCCGCATAACAGGCTT+GGG - chr8_1:46165792-46165811 Msa1196600:intron 55.0%
TCCATGAGATGTCCGGTCAG+TGG - chr8_1:46167869-46167888 Msa1196600:intron 55.0%
ACCACTGACCGGACATCTCA+TGG + chr8_1:46167873-46167892 None:intergenic 55.0%
GTCGAACGCTTACCACTGAC+CGG + chr8_1:46167884-46167903 None:intergenic 55.0%
CCCCGTCACTTGACGTTACA+AGG + chr8_1:46167906-46167925 None:intergenic 55.0%
TGACGGGGTTCAAATCCTCC+TGG - chr8_1:46167918-46167937 Msa1196600:intron 55.0%
! GAGGGCATGTCCTTCGGTTA+TGG + chr8_1:46168249-46168268 None:intergenic 55.0%
AGCCCAAACAGATCCTCCGG+AGG + chr8_1:46164127-46164146 None:intergenic 60.0%
! CTGACTTGCCACCAGTGCTC+TGG - chr8_1:46165458-46165477 Msa1196600:intron 60.0%
CACCTCCCGCATAACAGGCT+TGG - chr8_1:46165791-46165810 Msa1196600:intron 60.0%
ACTCGCTGTGCCTGAAGCGT+GGG + chr8_1:46166770-46166789 None:intergenic 60.0%
GCGCTCGCTTAGCATGCGAG+AGG - chr8_1:46164467-46164486 Msa1196600:intron 65.0%
GCCCAAGCCTGTTATGCGGG+AGG + chr8_1:46165796-46165815 None:intergenic 65.0%
CCTGAAGCGTGGGATCCTGG+TGG + chr8_1:46166760-46166779 None:intergenic 65.0%
CCACCAGGATCCCACGCTTC+AGG - chr8_1:46166757-46166776 Msa1196600:intron 65.0%
GTGCCTGAAGCGTGGGATCC+TGG + chr8_1:46166763-46166782 None:intergenic 65.0%
CACTCGCTGTGCCTGAAGCG+TGG + chr8_1:46166771-46166790 None:intergenic 65.0%
CACGCTTCAGGCACAGCGAG+TGG - chr8_1:46166769-46166788 Msa1196600:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 46163643 46168659 46163643 ID=Msa1196600;Name=Msa1196600
chr8_1 mRNA 46163643 46168659 46163643 ID=Msa1196600-mRNA-1;Parent=Msa1196600;Name=Msa1196600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=211|1|1|1|1|1|8|260|388
chr8_1 exon 46163643 46164267 46163643 ID=Msa1196600-mRNA-1:exon:14685;Parent=Msa1196600-mRNA-1
chr8_1 exon 46164503 46164605 46164503 ID=Msa1196600-mRNA-1:exon:14684;Parent=Msa1196600-mRNA-1
chr8_1 exon 46165500 46165592 46165500 ID=Msa1196600-mRNA-1:exon:14683;Parent=Msa1196600-mRNA-1
chr8_1 exon 46165867 46165999 46165867 ID=Msa1196600-mRNA-1:exon:14682;Parent=Msa1196600-mRNA-1
chr8_1 exon 46166762 46166850 46166762 ID=Msa1196600-mRNA-1:exon:14681;Parent=Msa1196600-mRNA-1
chr8_1 exon 46167473 46167635 46167473 ID=Msa1196600-mRNA-1:exon:14680;Parent=Msa1196600-mRNA-1
chr8_1 exon 46168135 46168190 46168135 ID=Msa1196600-mRNA-1:exon:14679;Parent=Msa1196600-mRNA-1
chr8_1 exon 46168284 46168659 46168284 ID=Msa1196600-mRNA-1:exon:14678;Parent=Msa1196600-mRNA-1
chr8_1 five_prime_UTR 46168449 46168659 46168449 ID=Msa1196600-mRNA-1:five_prime_utr;Parent=Msa1196600-mRNA-1
chr8_1 CDS 46168284 46168448 46168284 ID=Msa1196600-mRNA-1:cds;Parent=Msa1196600-mRNA-1
chr8_1 CDS 46168135 46168190 46168135 ID=Msa1196600-mRNA-1:cds;Parent=Msa1196600-mRNA-1
chr8_1 CDS 46167473 46167635 46167473 ID=Msa1196600-mRNA-1:cds;Parent=Msa1196600-mRNA-1
chr8_1 CDS 46166762 46166850 46166762 ID=Msa1196600-mRNA-1:cds;Parent=Msa1196600-mRNA-1
chr8_1 CDS 46165867 46165999 46165867 ID=Msa1196600-mRNA-1:cds;Parent=Msa1196600-mRNA-1
chr8_1 CDS 46165500 46165592 46165500 ID=Msa1196600-mRNA-1:cds;Parent=Msa1196600-mRNA-1
chr8_1 CDS 46164503 46164605 46164503 ID=Msa1196600-mRNA-1:cds;Parent=Msa1196600-mRNA-1
chr8_1 CDS 46163903 46164267 46163903 ID=Msa1196600-mRNA-1:cds;Parent=Msa1196600-mRNA-1
chr8_1 three_prime_UTR 46163643 46163902 46163643 ID=Msa1196600-mRNA-1:three_prime_utr;Parent=Msa1196600-mRNA-1
Gene Sequence

>Msa1196600

ATGAATTCTTGCCAACTAGTGATTCACACTCCATTTCGTTCTCTCACATTTCCATGCACAAAAACACCTCACCTCAACATTCATCTCTTCCTTTCCCTTCCTGCACCAACCATCCTTTGCTCATCACTCAATGATGATTCCTTTTCCATCCCAAAATCATCCCAGTTTAGGTACAGTCCTCCGGAGGATCTGTTTGGGCTAGAGGTGGAATTCAAGCCAAGGAAAGCTAACTCTCATACAAGAGAACCAAGGTCATGGTTTGGTCCGAATGGACAATATATCAGAGAGCTACCTTGTCCAAGTTGCCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATAGAACGATCTAGGTCAGACTGTCCAAAATGTAATGGAAAGGGTTTACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAGTCGATTGATGAACGACCGTGGGAGAGAGCTCAATCAATATCTCCACTCAAAGTGAAGGATGACGATGAAGTTGACAAATTGGACATAAAGCTAGATGCGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCATCTCCTGAAGTTGGATTGAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCCACGCTTCAGGCACAGCGAGTGGCTGCTATTAAGAAAGCCAAGAGGACTGTTTCAGCAAGAAATCATGCTTCCAAAACTATGAAAGATTTCTTTAGCGATCCAATAAACCGTGAAAAAAGGAGCATGTCCATGCAAGGTGTGAAATTCTATTGTCAAAACTGTGGACGTGAAGGACATAGGAGACACTACTGTCCAGAACTGAAGGATGGTTTGATTGATCGGCGATTCACATGTAGGCTATGTGGCGAAAAAGGCCACAACAGAAGAACATGCAATAAGTTAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACATCATCGATGTAAAATATGTCGACAATATGGCCATAACCGAAGGACATGCCCTCAAGTTATTTCAAATAAAAGAATGGAAATGACATCTCAGAGAGTATACAAATGTCGATTGTGTCAGAAAGAGGGACACAATAGTAGGACATGTCCTAGTAGAATAGTTGGCACTGAACATTCTCTAGAATAA

Protein sequence

>Msa1196600

MNSCQLVIHTPFRSLTFPCTKTPHLNIHLFLSLPAPTILCSSLNDDSFSIPKSSQFRYSPPEDLFGLEVEFKPRKANSHTREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKDDDEVDKLDIKLDAKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPTLQAQRVAAIKKAKRTVSARNHASKTMKDFFSDPINREKRSMSMQGVKFYCQNCGREGHRRHYCPELKDGLIDRRFTCRLCGEKGHNRRTCNKLRISHSDGRVIKHHRCKICRQYGHNRRTCPQVISNKRMEMTSQRVYKCRLCQKEGHNSRTCPSRIVGTEHSLE*