AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0212960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0212960 MtrunA17_Chr2g0312531 93.451 397 10 1 1 397 38 418 0.0 751
Msa0212960 MtrunA17_Chr7g0274271 23.077 338 221 11 74 395 161 475 2.53e-20 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0212960 AT1G56000.1 64.781 389 120 2 9 397 13 384 0.0 512
Msa0212960 AT1G56000.2 66.667 324 107 1 74 397 7 329 4.10e-158 448
Msa0212960 AT1G55980.2 62.349 332 109 1 9 340 13 328 4.54e-149 425
Msa0212960 AT1G55980.1 62.349 332 109 1 9 340 153 468 1.07e-147 427
Msa0212960 AT1G55980.3 64.045 267 96 0 74 340 7 273 1.05e-124 361
Msa0212960 AT3G04650.1 28.389 391 223 14 9 384 82 430 3.85e-32 127

Find 114 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACTTCCACTGTCTTTA+AGG 0.054220 2_1:-55399181 Msa0212960:CDS
CTCTATGTTGTCAAATTTAA+TGG 0.106504 2_1:+55397954 None:intergenic
GTGGATTGGCAGCAGCTTTA+AGG 0.178617 2_1:-55393024 Msa0212960:CDS
CAAAATCTTGGTCAGTTTAA+AGG 0.201127 2_1:-55397467 Msa0212960:CDS
CAAGATTGACTTACCATCTA+TGG 0.226818 2_1:+55394807 None:intergenic
AATAGGAAAAGAACCTTCTT+TGG 0.229970 2_1:+55398924 None:intergenic
TCCCTGTCCGTTGAAATTCT+TGG 0.274374 2_1:+55394861 None:intergenic
ATTAAATTCACACCCAAGTT+TGG 0.282745 2_1:+55392930 None:intergenic
TATGTTCAGATTCCAGTTAA+AGG 0.288822 2_1:-55395318 Msa0212960:intron
CATTTCTAGTTCTCCAAACT+TGG 0.295251 2_1:-55392943 Msa0212960:three_prime_UTR
AAGAGATTTGTGGGTGTTCC+AGG 0.300128 2_1:-55397703 Msa0212960:CDS
GTCTTTAAGGTTGCTGTGTT+GGG 0.311565 2_1:-55399168 Msa0212960:CDS
AGCAAGTTTGGTGTGGGTAT+TGG 0.312552 2_1:-55397545 Msa0212960:CDS
TTAATTGAGAAGCCTTTAAC+TGG 0.325933 2_1:+55395306 None:intergenic
ATCTATGGCACCTTCAACAT+TGG 0.342290 2_1:+55393048 None:intergenic
TGCTGCCAATCCACTATCTA+TGG 0.346820 2_1:+55393033 None:intergenic
AAAATTCTAAAGTTCTAAGT+TGG 0.347059 2_1:-55395284 Msa0212960:CDS
TTAGGTGTGGAAAGCAAGTT+TGG 0.352186 2_1:-55397557 Msa0212960:intron
ACCGCGAAACATGGCCTAAC+AGG 0.355118 2_1:+55396407 None:intergenic
ACTTGGGTGTGAATTTAATC+TGG 0.358888 2_1:-55392926 Msa0212960:three_prime_UTR
TGAACTAGACGAGCCACTTC+AGG 0.384189 2_1:+55398042 None:intergenic
TTCGGAGAACATGAAATTTA+CGG 0.397867 2_1:-55392837 Msa0212960:three_prime_UTR
AAGCTCCAATATGTAGCATT+TGG 0.398447 2_1:+55392810 None:intergenic
TGTCTTTAAGGTTGCTGTGT+TGG 0.412707 2_1:-55399169 Msa0212960:CDS
ATAGGAAAAGAACCTTCTTT+GGG 0.416059 2_1:+55398925 None:intergenic
TGTATTATATTTAGTGTGTT+CGG 0.421312 2_1:-55392855 Msa0212960:three_prime_UTR
GCCATGTTTCGCGGTTATGA+TGG 0.421407 2_1:-55396399 Msa0212960:CDS
ATACTTCAACTATAAACAAC+TGG 0.425588 2_1:+55392985 None:intergenic
CTTTGGGACATGCGTCCACC+AGG 0.427017 2_1:+55398941 None:intergenic
CTTTATTTCACAGTGAAAGA+TGG 0.433031 2_1:-55394985 Msa0212960:intron
TGTGTTAGTCCCAATGTTGA+AGG 0.442671 2_1:-55393058 Msa0212960:CDS
GTGGACCAAATGCTACATAT+TGG 0.443827 2_1:-55392815 Msa0212960:three_prime_UTR
TTCCAAGAATTTCAACGGAC+AGG 0.445197 2_1:-55394863 Msa0212960:CDS
TCCTGTTAGGCCATGTTTCG+CGG 0.445213 2_1:-55396408 Msa0212960:CDS
GTGGCTTTGAATTGAATATG+AGG 0.446152 2_1:+55399305 None:intergenic
TTTGAGTCTGCTAGAGGCCC+TGG 0.449558 2_1:-55398959 Msa0212960:CDS
CTTAATAACATTCTAAATTG+TGG 0.450393 2_1:-55392493 Msa0212960:three_prime_UTR
TAGTTGAAGTATTGAAGCCT+TGG 0.450499 2_1:-55392974 Msa0212960:three_prime_UTR
AAATTCTAAAGTTCTAAGTT+GGG 0.454731 2_1:-55395283 Msa0212960:CDS
GAGAAATTGTGGTCATTGAT+AGG 0.459014 2_1:-55397500 Msa0212960:CDS
TTCCAGAAAATAAGAAACTT+AGG 0.459572 2_1:+55398138 None:intergenic
TCTAGAGAGAAAACTGAAGA+TGG 0.459795 2_1:-55398114 Msa0212960:CDS
GCTGAATGGAGAGAAAAGTT+TGG 0.467648 2_1:-55397994 Msa0212960:CDS
GGACTAAGCAAGAGATTTGT+GGG 0.467979 2_1:-55397712 Msa0212960:CDS
GTTGAAGGTGCCATAGATAG+TGG 0.474892 2_1:-55393043 Msa0212960:CDS
AGAGAGTATAATTGCTCAAA+CGG 0.476140 2_1:-55394936 Msa0212960:CDS
TTTATTTCACAGTGAAAGAT+GGG 0.483556 2_1:-55394984 Msa0212960:intron
GCATCAACTCTTGCTAGAAA+TGG 0.485520 2_1:-55398998 Msa0212960:CDS
AAGGTTGCTGTGTTGGGTGG+TGG 0.487031 2_1:-55399162 Msa0212960:CDS
AACACAGAAGTCCCCACATA+TGG 0.489054 2_1:+55393075 None:intergenic
ATAAGAACATAGTTTCTACT+AGG 0.492921 2_1:-55397430 Msa0212960:CDS
GGCTCGTCTAGTTCAAGAAT+GGG 0.493742 2_1:-55398034 Msa0212960:CDS
TGAATAGAGAGAGAAAGAGC+TGG 0.495050 2_1:+55399246 None:intergenic
CGAGGGGTCTCGTAGCTGAA+TGG 0.495649 2_1:-55398008 Msa0212960:CDS
CAGCTATAGTAGACTAGCCT+TGG 0.495721 2_1:+55392731 None:intergenic
AAGCAAATATCACAAAACTT+TGG 0.495738 2_1:-55392571 Msa0212960:three_prime_UTR
GGTGTGAATGGACAAAATCT+TGG 0.501092 2_1:-55397479 Msa0212960:CDS
GACCATGAGACTTCAAGAAA+AGG 0.503697 2_1:-55392596 Msa0212960:three_prime_UTR
TAAATTTGACAACATAGAGC+AGG 0.504476 2_1:-55397950 Msa0212960:intron
TTGCATATAGAATTCATGCC+TGG 0.504523 2_1:+55397685 None:intergenic
TACTGTGATAGCAGGAAGCC+AGG 0.508981 2_1:-55395258 Msa0212960:CDS
CTCGGTTAGCAAGCCTGAAG+TGG 0.510458 2_1:-55398055 Msa0212960:CDS
GAGAGTATAATTGCTCAAAC+GGG 0.516333 2_1:-55394935 Msa0212960:CDS
AGGACTAAGCAAGAGATTTG+TGG 0.517881 2_1:-55397713 Msa0212960:CDS
TGGCTCGTCTAGTTCAAGAA+TGG 0.519455 2_1:-55398035 Msa0212960:CDS
TCTATGGCACCTTCAACATT+GGG 0.520411 2_1:+55393049 None:intergenic
AACAAGAGACTAGCCATATG+TGG 0.520604 2_1:-55393088 Msa0212960:CDS
AAGATTGACTTACCATCTAT+GGG 0.521682 2_1:+55394808 None:intergenic
TCTTGGGCAATGCTAGCAGC+TGG 0.522353 2_1:+55393133 None:intergenic
ATTTCTAGTTCTCCAAACTT+GGG 0.525086 2_1:-55392942 Msa0212960:three_prime_UTR
AGCTGCTAGCATTGCCCAAG+AGG 0.542908 2_1:-55393131 Msa0212960:CDS
TCCAAGAATTTCAACGGACA+GGG 0.547169 2_1:-55394862 Msa0212960:CDS
TTACTCAATGTAACGTCTGA+GGG 0.548113 2_1:+55394902 None:intergenic
AGCTGCACAATCTTCCTGTT+AGG 0.554777 2_1:-55396421 Msa0212960:CDS
TGGTCATTGATAGGTGTGAA+TGG 0.555329 2_1:-55397491 Msa0212960:CDS
TGGGTATTGGAAGAGTTGAA+TGG 0.559316 2_1:-55397532 Msa0212960:CDS
AGACGTTACATTGAGTAAAG+TGG 0.562746 2_1:-55394897 Msa0212960:CDS
GCCATCATAACCGCGAAACA+TGG 0.563610 2_1:+55396398 None:intergenic
TACCTTGCAGTAGAACGGCC+TGG 0.564395 2_1:+55395240 None:intergenic
ACACTCTTTGAGTCTGCTAG+AGG 0.565822 2_1:-55398965 Msa0212960:CDS
AGAGAAAACTGAAGATGGGA+AGG 0.566879 2_1:-55398109 Msa0212960:CDS
CTAGAGAGAAAACTGAAGAT+GGG 0.567373 2_1:-55398113 Msa0212960:CDS
TATTGGAAGAGTTGAATGGT+TGG 0.571536 2_1:-55397528 Msa0212960:CDS
ACTAGGATTGCAGATGTCAC+AGG 0.578838 2_1:-55397413 Msa0212960:CDS
GTTGGGCTTACTGTGATAGC+AGG 0.579207 2_1:-55395266 Msa0212960:CDS
ACAAATACCTTGCAGTAGAA+CGG 0.586215 2_1:+55395235 None:intergenic
AGTTCAAGAATGGGAGTCGA+GGG 0.586947 2_1:-55398025 Msa0212960:CDS
ACAGGACGGTTGCCACCACT+TGG 0.588089 2_1:-55397395 Msa0212960:intron
AGCCAGGCCGTTCTACTGCA+AGG 0.588379 2_1:-55395242 Msa0212960:intron
GTGGACGCATGTCCCAAAGA+AGG 0.590847 2_1:-55398937 Msa0212960:intron
TTTAAGGTTGCTGTGTTGGG+TGG 0.593128 2_1:-55399165 Msa0212960:CDS
ACAAGAGACTAGCCATATGT+GGG 0.595773 2_1:-55393087 Msa0212960:CDS
GGTTGGATGATGAGAAATTG+TGG 0.598955 2_1:-55397511 Msa0212960:CDS
GTAGACTAGCCTTGGTTGAG+CGG 0.602785 2_1:+55392739 None:intergenic
CTAGAAATGATAATGTTCCA+AGG 0.605714 2_1:+55392957 None:intergenic
TGTGGAAAGCAAGTTTGGTG+TGG 0.614933 2_1:-55397552 Msa0212960:CDS
TTTACTCAATGTAACGTCTG+AGG 0.616668 2_1:+55394901 None:intergenic
TAGTTCAAGAATGGGAGTCG+AGG 0.616885 2_1:-55398026 Msa0212960:CDS
GTGGAAAGCAAGTTTGGTGT+GGG 0.619348 2_1:-55397551 Msa0212960:CDS
CTGGAAAGTAGTTGTAACAG+TGG 0.622165 2_1:+55399265 None:intergenic
AGGTGCCATAGATAGTGGAT+TGG 0.636479 2_1:-55393038 Msa0212960:CDS
TTTGGGACATGCGTCCACCA+GGG 0.639991 2_1:+55398942 None:intergenic
AGCATATTCATACCAAGTGG+TGG 0.641539 2_1:+55397383 None:intergenic
GATTACTCACCGCTCAACCA+AGG 0.641827 2_1:-55392748 Msa0212960:three_prime_UTR
CACAGCAACCTTAAAGACAG+TGG 0.642228 2_1:+55399173 None:intergenic
CTTAATCATACCGTTGACAG+AGG 0.665226 2_1:+55396365 None:intergenic
GAGTCTGCTAGAGGCCCTGG+TGG 0.667455 2_1:-55398956 Msa0212960:CDS
GTGGGAGAACTATAAACTCA+CGG 0.667731 2_1:-55392775 Msa0212960:three_prime_UTR
AAAGCATTATGCAACGAGAG+TGG 0.676560 2_1:-55397664 Msa0212960:intron
GGAGAACATGAAATTTACGG+TGG 0.689258 2_1:-55392834 Msa0212960:three_prime_UTR
GTTCAAGAATGGGAGTCGAG+GGG 0.707586 2_1:-55398024 Msa0212960:CDS
CAAGAGACTAGCCATATGTG+GGG 0.727472 2_1:-55393086 Msa0212960:CDS
GGATTGCAGATGTCACAGGA+CGG 0.734670 2_1:-55397409 Msa0212960:CDS
GGAGAACTATAAACTCACGG+TGG 0.830587 2_1:-55392772 Msa0212960:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATTATTTATTTATTT+TGG - chr2_1:55392678-55392697 Msa0212960:three_prime_UTR 0.0%
!! CCATTAAATAAATAAAAAAT+AGG + chr2_1:55392862-55392881 None:intergenic 10.0%
!!! CCTATTTTTTATTTATTTAA+TGG - chr2_1:55392859-55392878 Msa0212960:three_prime_UTR 10.0%
!!! GATTATTATTTCTTATTATT+AGG - chr2_1:55394191-55394210 Msa0212960:intron 10.0%
!!! TATGATTATGATTTTTGAAA+TGG - chr2_1:55392722-55392741 Msa0212960:three_prime_UTR 15.0%
!!! ATATTTTATAGCTGTTAAAT+TGG - chr2_1:55392919-55392938 Msa0212960:three_prime_UTR 15.0%
!! TACAAAATATTGTCAAATAA+CGG + chr2_1:55393015-55393034 None:intergenic 15.0%
!!! TAAAAGTTTGTTTTTTTGTT+AGG - chr2_1:55394439-55394458 Msa0212960:intron 15.0%
!! TTTAATATATATAAGCTAGA+TGG + chr2_1:55394484-55394503 None:intergenic 15.0%
!!! TGATATATTTTATCTGATTT+TGG - chr2_1:55395003-55395022 Msa0212960:intron 15.0%
!!! CTATTTTTAATCTTTCATAT+AGG - chr2_1:55396368-55396387 Msa0212960:intron 15.0%
!!! AACCTTGTTTAAAAAATATT+GGG + chr2_1:55396739-55396758 None:intergenic 15.0%
!!! AAACCTTGTTTAAAAAATAT+TGG + chr2_1:55396740-55396759 None:intergenic 15.0%
!!! TTACTATTTTTTATTCTCTT+CGG + chr2_1:55398237-55398256 None:intergenic 15.0%
!!! GGACAATTTTATATTATGTA+TGG - chr2_1:55393178-55393197 Msa0212960:intron 20.0%
!!! AGTTTCTTTCTTAAAGATTT+TGG - chr2_1:55393218-55393237 Msa0212960:intron 20.0%
!! AATTACATGCATTAAAACAA+TGG + chr2_1:55393441-55393460 None:intergenic 20.0%
!!! ATTGTTTTAATGCATGTAAT+TGG - chr2_1:55393440-55393459 Msa0212960:intron 20.0%
!!! TTTTATAGATTGTCATTGTT+TGG - chr2_1:55393476-55393495 Msa0212960:intron 20.0%
!!! CTATGTTTTTCTAATATTTG+AGG + chr2_1:55393890-55393909 None:intergenic 20.0%
!!! TTAGAAAAACATAGATTTTC+TGG - chr2_1:55393896-55393915 Msa0212960:intron 20.0%
!!! TAGAAAAACATAGATTTTCT+GGG - chr2_1:55393897-55393916 Msa0212960:intron 20.0%
!!! ATAATAGTTTTTTCTATGAC+TGG - chr2_1:55394016-55394035 Msa0212960:intron 20.0%
!!! GAAATAATAATCATTTTCAC+TGG + chr2_1:55394183-55394202 None:intergenic 20.0%
!!! TTATTTCTTATTATTAGGTG+TGG - chr2_1:55394196-55394215 Msa0212960:intron 20.0%
!!! CTGATTAGTTATTTTTGAAA+GGG - chr2_1:55394651-55394670 Msa0212960:intron 20.0%
!! ACAGTATTATGTACTAAATA+AGG + chr2_1:55394758-55394777 None:intergenic 20.0%
!! CCATAAAATAGTCATTTATT+TGG + chr2_1:55395162-55395181 None:intergenic 20.0%
!!! CCAAATAAATGACTATTTTA+TGG - chr2_1:55395159-55395178 Msa0212960:intron 20.0%
!!! TTCTTTATTGCTTTTTTAAC+TGG - chr2_1:55395535-55395554 Msa0212960:intron 20.0%
!!! TCTTTATTGCTTTTTTAACT+GGG - chr2_1:55395536-55395555 Msa0212960:intron 20.0%
!! ACTATTACAATGTAAAACAT+GGG - chr2_1:55395710-55395729 Msa0212960:intron 20.0%
!! TAAGATTCTTAGTAAAAAGA+AGG - chr2_1:55395757-55395776 Msa0212960:intron 20.0%
!!! ATTATTTTGTTTATCCAAAC+AGG - chr2_1:55396318-55396337 Msa0212960:intron 20.0%
!!! TTATTTTGTTTATCCAAACA+GGG - chr2_1:55396319-55396338 Msa0212960:intron 20.0%
!!! TGATTTTACATCACAATAAA+TGG + chr2_1:55396401-55396420 None:intergenic 20.0%
!! TTTATTGTGATGTAAAATCA+AGG - chr2_1:55396401-55396420 Msa0212960:CDS 20.0%
!!! AAAATTCTAAAGTTCTAAGT+TGG - chr2_1:55396482-55396501 Msa0212960:intron 20.0%
!!! AAATTCTAAAGTTCTAAGTT+GGG - chr2_1:55396483-55396502 Msa0212960:intron 20.0%
!! GTGGAGATTATTATTAATAA+TGG + chr2_1:55396713-55396732 None:intergenic 20.0%
!! TTTAAAAAATATTGGGAAAG+TGG + chr2_1:55396732-55396751 None:intergenic 20.0%
!!! TTCCCAATATTTTTTAAACA+AGG - chr2_1:55396734-55396753 Msa0212960:intron 20.0%
!! GGTGTATACTTAAATAATTA+CGG + chr2_1:55397109-55397128 None:intergenic 20.0%
!!! GATTGCTAAATTTTAGAAAA+TGG + chr2_1:55397396-55397415 None:intergenic 20.0%
!!! TTTCTAAAATTTAGCAATCA+TGG - chr2_1:55397397-55397416 Msa0212960:CDS 20.0%
!!! AGAACTATTTTTAATCATGT+TGG - chr2_1:55398585-55398604 Msa0212960:intron 20.0%
!!! TATATTAAACAAGTTTTCTG+AGG + chr2_1:55398876-55398895 None:intergenic 20.0%
!! TGTATTATATTTAGTGTGTT+CGG - chr2_1:55398911-55398930 Msa0212960:intron 20.0%
!!! ATGTCTTAAAGTTTTAGTTA+TGG - chr2_1:55399140-55399159 Msa0212960:intron 20.0%
!! CTTAATAACATTCTAAATTG+TGG - chr2_1:55399273-55399292 Msa0212960:five_prime_UTR 20.0%
! TTTAATAAAACAGTGTTTCG+TGG - chr2_1:55393157-55393176 Msa0212960:intron 25.0%
! TTGATTATTTGTACTCATCA+TGG - chr2_1:55393282-55393301 Msa0212960:intron 25.0%
! TGATTATTTGTACTCATCAT+GGG - chr2_1:55393283-55393302 Msa0212960:intron 25.0%
!! TTGGCTTAGTGTTAATTTTA+AGG - chr2_1:55393600-55393619 Msa0212960:intron 25.0%
! TTCCAGAAAATAAGAAACTT+AGG + chr2_1:55393631-55393650 None:intergenic 25.0%
! CTCTATGTTGTCAAATTTAA+TGG + chr2_1:55393815-55393834 None:intergenic 25.0%
! ATAAGAACATAGTTTCTACT+AGG - chr2_1:55394336-55394355 Msa0212960:intron 25.0%
! ACAAAAGTAACAAAAGTGAT+TGG - chr2_1:55394524-55394543 Msa0212960:intron 25.0%
! AGGTACTACAATTCTTAATT+TGG - chr2_1:55394593-55394612 Msa0212960:intron 25.0%
! AATAACTAATCAGCAATTCA+AGG + chr2_1:55394644-55394663 None:intergenic 25.0%
!!! GCTGATTAGTTATTTTTGAA+AGG - chr2_1:55394650-55394669 Msa0212960:intron 25.0%
!!! TATTTTTGAAAGGGTATTGT+CGG - chr2_1:55394660-55394679 Msa0212960:intron 25.0%
! ATATTCAGTATTGTCAATCT+CGG + chr2_1:55394851-55394870 None:intergenic 25.0%
! GAAAGATGATAAAGTTAAAC+AGG + chr2_1:55394959-55394978 None:intergenic 25.0%
! ATAACTTCGTGAATGAAAAA+AGG + chr2_1:55395586-55395605 None:intergenic 25.0%
!!! ATTTTTCAGTTGTTTCATAC+AGG + chr2_1:55395621-55395640 None:intergenic 25.0%
! GACTATTACAATGTAAAACA+TGG - chr2_1:55395709-55395728 Msa0212960:intron 25.0%
! AATCTTACACAGACAATATA+AGG + chr2_1:55395744-55395763 None:intergenic 25.0%
!!! GCTTTTTTCATAAGTTTTCT+CGG + chr2_1:55396148-55396167 None:intergenic 25.0%
! TTAATCTTTCATATAGGAGT+AGG - chr2_1:55396374-55396393 Msa0212960:intron 25.0%
! TTTATTTCACAGTGAAAGAT+GGG - chr2_1:55396782-55396801 Msa0212960:intron 25.0%
! TTCAACTGAACTATGATTAT+GGG + chr2_1:55397517-55397536 None:intergenic 25.0%
! TTTCAACTGAACTATGATTA+TGG + chr2_1:55397518-55397537 None:intergenic 25.0%
! ATTTACATAACCTGTTTATC+AGG - chr2_1:55397804-55397823 Msa0212960:intron 25.0%
! TCTTTATTAACCTGATAAAC+AGG + chr2_1:55397817-55397836 None:intergenic 25.0%
! TGTTTATCAGGTTAATAAAG+AGG - chr2_1:55397816-55397835 Msa0212960:intron 25.0%
! GTAGTATTGTTTGTTTCAAA+TGG + chr2_1:55397925-55397944 None:intergenic 25.0%
! TTAGTATTCTTCCATTAACA+AGG + chr2_1:55398082-55398101 None:intergenic 25.0%
! ATACTTCAACTATAAACAAC+TGG + chr2_1:55398784-55398803 None:intergenic 25.0%
!!! AAGTTTTAGTTATGGTTGAT+TGG - chr2_1:55399148-55399167 Msa0212960:intron 25.0%
! AAGCAAATATCACAAAACTT+TGG - chr2_1:55399195-55399214 Msa0212960:CDS 25.0%
!! TGTTATTAAGCACAACTTTT+AGG + chr2_1:55399263-55399282 None:intergenic 25.0%
!!! AGTCATTGTTTTTTGGTTGT+TGG + chr2_1:55392572-55392591 None:intergenic 30.0%
TAAATTTGGTAGAAAGAGAG+AGG + chr2_1:55392649-55392668 None:intergenic 30.0%
ATAGGAAAAGAACCTTCTTT+GGG + chr2_1:55392844-55392863 None:intergenic 30.0%
AATAGGAAAAGAACCTTCTT+TGG + chr2_1:55392845-55392864 None:intergenic 30.0%
!! TTGTCAAATAACGGATATAG+CGG + chr2_1:55393006-55393025 None:intergenic 30.0%
! CTAATTTGAGTGTTTCTGAT+TGG - chr2_1:55393254-55393273 Msa0212960:intron 30.0%
GAGCATAACACAATTAAAGT+TGG - chr2_1:55393543-55393562 Msa0212960:intron 30.0%
GTTACTGGAATTCATTTCAT+TGG - chr2_1:55393581-55393600 Msa0212960:intron 30.0%
!!! GTCCTAAGTTTCTTATTTTC+TGG - chr2_1:55393626-55393645 Msa0212960:intron 30.0%
TAAATTTGACAACATAGAGC+AGG - chr2_1:55393816-55393835 Msa0212960:intron 30.0%
! AATCATTTTCACTGGATTCA+CGG + chr2_1:55394175-55394194 None:intergenic 30.0%
CAAAATCTTGGTCAGTTTAA+AGG - chr2_1:55394299-55394318 Msa0212960:intron 30.0%
ATGAATATGCTTTCTATCCT+TGG - chr2_1:55394395-55394414 Msa0212960:intron 30.0%
AATCAGAGATTAAGAAACCA+AGG + chr2_1:55394415-55394434 None:intergenic 30.0%
TAACAAAAGTGATTGGAGAA+GGG - chr2_1:55394531-55394550 Msa0212960:intron 30.0%
AGCAATTCAAGGAAAAAAAG+TGG + chr2_1:55394633-55394652 None:intergenic 30.0%
CTGCTACACAAGAATAATAT+AGG + chr2_1:55394807-55394826 None:intergenic 30.0%
! TATTCATCAAAGCCTCTTTT+TGG + chr2_1:55394924-55394943 None:intergenic 30.0%
AGAGATGAATAGTCTATCTA+TGG - chr2_1:55395135-55395154 Msa0212960:intron 30.0%
! TTATGTTTTACACTCACCTA+TGG - chr2_1:55395275-55395294 Msa0212960:CDS 30.0%
GAAACAACTGAAAAATAGCT+TGG - chr2_1:55395625-55395644 Msa0212960:intron 30.0%
TCATTGTGATTAATCCAAGA+GGG - chr2_1:55395784-55395803 Msa0212960:intron 30.0%
!! ATGAGACAAAAGTTTTGTAG+CGG - chr2_1:55395808-55395827 Msa0212960:intron 30.0%
! TTTTGTAGCGGTTATGAAAT+GGG - chr2_1:55395820-55395839 Msa0212960:intron 30.0%
! ATTTGGGGTTATTTGTCAAT+AGG - chr2_1:55395906-55395925 Msa0212960:intron 30.0%
!! TTATTTGTCAATAGGTTGGT+TGG - chr2_1:55395914-55395933 Msa0212960:intron 30.0%
!! TATTTGTCAATAGGTTGGTT+GGG - chr2_1:55395915-55395934 Msa0212960:intron 30.0%
TTCCATTTATAGCACTTGTT+TGG - chr2_1:55396074-55396093 Msa0212960:intron 30.0%
ATCCAAACAAGTGCTATAAA+TGG + chr2_1:55396079-55396098 None:intergenic 30.0%
AATACGCTGAAAACAACTTA+TGG + chr2_1:55396181-55396200 None:intergenic 30.0%
AACTTAATTATTGCCCTGTT+TGG + chr2_1:55396335-55396354 None:intergenic 30.0%
ACAGGGCAATAATTAAGTTA+AGG - chr2_1:55396336-55396355 Msa0212960:intron 30.0%
! CTTTATTTCACAGTGAAAGA+TGG - chr2_1:55396781-55396800 Msa0212960:intron 30.0%
! AGAGAGTATAATTGCTCAAA+CGG - chr2_1:55396830-55396849 Msa0212960:intron 30.0%
! AGCTTTTCCAAGAATTTCAA+CGG - chr2_1:55396898-55396917 Msa0212960:intron 30.0%
! AAGATTGACTTACCATCTAT+GGG + chr2_1:55396961-55396980 None:intergenic 30.0%
! GCAAGTTAAGTAAGTTGAAA+AGG - chr2_1:55397177-55397196 Msa0212960:intron 30.0%
! TCACTTGGAATACTAGATTT+TGG + chr2_1:55397239-55397258 None:intergenic 30.0%
TCACTCATTGAGTCAAATAA+CGG - chr2_1:55397270-55397289 Msa0212960:intron 30.0%
!! GTGTGCTTTTTATTAACTGA+TGG - chr2_1:55397368-55397387 Msa0212960:intron 30.0%
GAAAGTAAATCCCAAAATCA+TGG - chr2_1:55397714-55397733 Msa0212960:CDS 30.0%
! GCTTAAAATGCCATGATTTT+GGG + chr2_1:55397727-55397746 None:intergenic 30.0%
! AGCTTAAAATGCCATGATTT+TGG + chr2_1:55397728-55397747 None:intergenic 30.0%
TTAATAAAGAGGTCCATGTT+TGG - chr2_1:55397827-55397846 Msa0212960:intron 30.0%
! TAAGGCATTAGATAACAAGA+AGG - chr2_1:55397863-55397882 Msa0212960:intron 30.0%
CATTAGATAACAAGAAGGTT+TGG - chr2_1:55397868-55397887 Msa0212960:intron 30.0%
GATACTTACTTCCTTGTTAA+TGG - chr2_1:55398068-55398087 Msa0212960:CDS 30.0%
TCTAGAAACTGAATTCGTAT+AGG - chr2_1:55398115-55398134 Msa0212960:CDS 30.0%
!! CTTATTTTCATAAGTTCTGC+AGG + chr2_1:55398434-55398453 None:intergenic 30.0%
!! ATCATGTTGGTTGATTTTGT+AGG - chr2_1:55398598-55398617 Msa0212960:intron 30.0%
!! TCATGTTGGTTGATTTTGTA+GGG - chr2_1:55398599-55398618 Msa0212960:intron 30.0%
! CTAGAAATGATAATGTTCCA+AGG + chr2_1:55398812-55398831 None:intergenic 30.0%
!! ATTTCTAGTTCTCCAAACTT+GGG - chr2_1:55398824-55398843 Msa0212960:intron 30.0%
ATTAAATTCACACCCAAGTT+TGG + chr2_1:55398839-55398858 None:intergenic 30.0%
TTCGGAGAACATGAAATTTA+CGG - chr2_1:55398929-55398948 Msa0212960:intron 30.0%
! GAGCTTCTAAAAATTACAGT+GGG - chr2_1:55398973-55398992 Msa0212960:CDS 30.0%
AACAGTGGAAAAAGTCATCA+TGG + chr2_1:55392489-55392508 None:intergenic 35.0%
!!! CAGTGGAAGTCATTGTTTTT+TGG + chr2_1:55392579-55392598 None:intergenic 35.0%
AATGACTTCCACTGTCTTTA+AGG - chr2_1:55392585-55392604 Msa0212960:three_prime_UTR 35.0%
! TTTGAAATGGTTGCAGTTTC+AGG - chr2_1:55392735-55392754 Msa0212960:three_prime_UTR 35.0%
!! TAAATTGGTGTTGTCAATCG+CGG - chr2_1:55392934-55392953 Msa0212960:three_prime_UTR 35.0%
ATAGTGTATCTTAGCCATTG+CGG - chr2_1:55393039-55393058 Msa0212960:CDS 35.0%
!!! ACTATTTTTTAGTGCGAACC+AGG + chr2_1:55393113-55393132 None:intergenic 35.0%
TTTGGTTAAAGAAACAGTGC+TGG - chr2_1:55393494-55393513 Msa0212960:intron 35.0%
TATTTCCGTCTGAATGTTAC+TGG - chr2_1:55393566-55393585 Msa0212960:intron 35.0%
GAATTCCAGTAACATTCAGA+CGG + chr2_1:55393574-55393593 None:intergenic 35.0%
TCTAGAGAGAAAACTGAAGA+TGG - chr2_1:55393652-55393671 Msa0212960:intron 35.0%
CTAGAGAGAAAACTGAAGAT+GGG - chr2_1:55393653-55393672 Msa0212960:intron 35.0%
! GTTGCTTCCATTTTCAACAT+CGG - chr2_1:55393933-55393952 Msa0212960:intron 35.0%
!!! CTATGACTGGCGTATTTTTT+AGG - chr2_1:55394029-55394048 Msa0212960:intron 35.0%
TTGCATATAGAATTCATGCC+TGG + chr2_1:55394084-55394103 None:intergenic 35.0%
TATTGGAAGAGTTGAATGGT+TGG - chr2_1:55394238-55394257 Msa0212960:intron 35.0%
GAGAAATTGTGGTCATTGAT+AGG - chr2_1:55394266-55394285 Msa0212960:intron 35.0%
! GAAAGCATATTCATACCAAG+TGG + chr2_1:55394389-55394408 None:intergenic 35.0%
GTAACAAAAGTGATTGGAGA+AGG - chr2_1:55394530-55394549 Msa0212960:intron 35.0%
AAGCTTATTGGCATAGCAAT+CGG + chr2_1:55394570-55394589 None:intergenic 35.0%
GTAGTACCTAACAAGCTTAT+TGG + chr2_1:55394582-55394601 None:intergenic 35.0%
!! TTGTCGGTGTTGTTAAATAG+TGG - chr2_1:55394676-55394695 Msa0212960:intron 35.0%
ATACTGTCAAATAGAAGCTG+TGG - chr2_1:55394771-55394790 Msa0212960:intron 35.0%
AGAATAATATAGGTCGCTAC+AGG + chr2_1:55394797-55394816 None:intergenic 35.0%
ATTAACATGCTGCTAAGAAG+AGG - chr2_1:55394886-55394905 Msa0212960:CDS 35.0%
ATACTAGTGAAGCCAAAAAG+AGG - chr2_1:55394909-55394928 Msa0212960:CDS 35.0%
GCTAATATGTGAGCTTTACA+TGG - chr2_1:55395461-55395480 Msa0212960:intron 35.0%
AAACCATTTCATCTCATGCT+TGG - chr2_1:55395498-55395517 Msa0212960:intron 35.0%
AAACCAAGCATGAGATGAAA+TGG + chr2_1:55395504-55395523 None:intergenic 35.0%
! TTTCATCTCATGCTTGGTTT+TGG - chr2_1:55395504-55395523 Msa0212960:intron 35.0%
CTTGGATTAATCACAATGAG+AGG + chr2_1:55395783-55395802 None:intergenic 35.0%
CTCATTGTGATTAATCCAAG+AGG - chr2_1:55395783-55395802 Msa0212960:intron 35.0%
! GTTTTGTAGCGGTTATGAAA+TGG - chr2_1:55395819-55395838 Msa0212960:intron 35.0%
! CAACTAAGAGTTTAAGACAG+TGG - chr2_1:55395878-55395897 Msa0212960:intron 35.0%
! TAAGAGTTTAAGACAGTGGA+GGG - chr2_1:55395882-55395901 Msa0212960:intron 35.0%
AAACTAGCATATGCGAGTAA+GGG + chr2_1:55396043-55396062 None:intergenic 35.0%
AAAACTAGCATATGCGAGTA+AGG + chr2_1:55396044-55396063 None:intergenic 35.0%
ACAAATACCTTGCAGTAGAA+CGG + chr2_1:55396534-55396553 None:intergenic 35.0%
! GAGAGTATAATTGCTCAAAC+GGG - chr2_1:55396831-55396850 Msa0212960:intron 35.0%
TTACTCAATGTAACGTCTGA+GGG + chr2_1:55396867-55396886 None:intergenic 35.0%
TTTACTCAATGTAACGTCTG+AGG + chr2_1:55396868-55396887 None:intergenic 35.0%
AGACGTTACATTGAGTAAAG+TGG - chr2_1:55396869-55396888 Msa0212960:intron 35.0%
CTATGGGCTTTCTTGAAAAA+AGG + chr2_1:55396945-55396964 None:intergenic 35.0%
!! TTTTCAAGAAAGCCCATAGA+TGG - chr2_1:55396946-55396965 Msa0212960:intron 35.0%
! CAAGATTGACTTACCATCTA+TGG + chr2_1:55396962-55396981 None:intergenic 35.0%
CATAGATGGTAAGTCAATCT+TGG - chr2_1:55396960-55396979 Msa0212960:intron 35.0%
TGAATGCTATTCACATGTCA+TGG - chr2_1:55396984-55397003 Msa0212960:intron 35.0%
ATAGCCTATGTAGTATCTAG+CGG - chr2_1:55397052-55397071 Msa0212960:intron 35.0%
CAATAGTAAGTTCAACAGAG+AGG + chr2_1:55397158-55397177 None:intergenic 35.0%
CACTCATTGAGTCAAATAAC+GGG - chr2_1:55397271-55397290 Msa0212960:intron 35.0%
! AGCACAATCTGAAAGGATTT+TGG - chr2_1:55397423-55397442 Msa0212960:CDS 35.0%
CGCAGAATGTTTAATACAGA+TGG + chr2_1:55397489-55397508 None:intergenic 35.0%
TCAGGGTTTAGTGTAAATTC+TGG + chr2_1:55397561-55397580 None:intergenic 35.0%
!! TTGAGAGAGTTTGTTGTTTC+TGG + chr2_1:55397665-55397684 None:intergenic 35.0%
! GCATTTTAAGCTATTGAGTC+TGG - chr2_1:55397736-55397755 Msa0212960:intron 35.0%
TGTAAATGTAACCAGCAAGA+TGG + chr2_1:55397791-55397810 None:intergenic 35.0%
!! TTTTGAAGAGAGGTTTCTGA+GGG + chr2_1:55397956-55397975 None:intergenic 35.0%
!!! CTCTATATGGTTTTGAAGAG+AGG + chr2_1:55397966-55397985 None:intergenic 35.0%
CGAATGTAGAGTTCTCTATA+TGG + chr2_1:55397979-55397998 None:intergenic 35.0%
CGTCAATAACTAGTTGGTTA+GGG + chr2_1:55398006-55398025 None:intergenic 35.0%
TCGTCAATAACTAGTTGGTT+AGG + chr2_1:55398007-55398026 None:intergenic 35.0%
AGAGTTCGTCAATAACTAGT+TGG + chr2_1:55398012-55398031 None:intergenic 35.0%
ATGCATATTTACGTCTTGTG+TGG - chr2_1:55398285-55398304 Msa0212960:intron 35.0%
AAACACTTCTCAGACAGTTT+GGG + chr2_1:55398503-55398522 None:intergenic 35.0%
TAAACACTTCTCAGACAGTT+TGG + chr2_1:55398504-55398523 None:intergenic 35.0%
!! CATGTTGGTTGATTTTGTAG+GGG - chr2_1:55398600-55398619 Msa0212960:intron 35.0%
! CCAAAGACATTTTTCCTCTT+GGG + chr2_1:55398652-55398671 None:intergenic 35.0%
CCAAGAGGAAAAATGTCTTT+GGG - chr2_1:55398650-55398669 Msa0212960:intron 35.0%
!! TAGTTGAAGTATTGAAGCCT+TGG - chr2_1:55398792-55398811 Msa0212960:intron 35.0%
!! CATTTCTAGTTCTCCAAACT+TGG - chr2_1:55398823-55398842 Msa0212960:intron 35.0%
ACTTGGGTGTGAATTTAATC+TGG - chr2_1:55398840-55398859 Msa0212960:intron 35.0%
AAGCTCCAATATGTAGCATT+TGG + chr2_1:55398959-55398978 None:intergenic 35.0%
! GGAGCTTCTAAAAATTACAG+TGG - chr2_1:55398972-55398991 Msa0212960:CDS 35.0%
! TTCCTTTTCTTGAAGTCTCA+TGG + chr2_1:55399175-55399194 None:intergenic 35.0%
AGTGGAAAAAGTCATCATGG+TGG + chr2_1:55392486-55392505 None:intergenic 40.0%
CTGGAAAGTAGTTGTAACAG+TGG + chr2_1:55392504-55392523 None:intergenic 40.0%
TGAATAGAGAGAGAAAGAGC+TGG + chr2_1:55392523-55392542 None:intergenic 40.0%
!! TGTCTTTAAGGTTGCTGTGT+TGG - chr2_1:55392597-55392616 Msa0212960:three_prime_UTR 40.0%
!! GTCTTTAAGGTTGCTGTGTT+GGG - chr2_1:55392598-55392617 Msa0212960:three_prime_UTR 40.0%
GCATCAACTCTTGCTAGAAA+TGG - chr2_1:55392768-55392787 Msa0212960:three_prime_UTR 40.0%
!! AAATTGGTGTTGTCAATCGC+GGG - chr2_1:55392935-55392954 Msa0212960:three_prime_UTR 40.0%
TGCTATAAACTATTGTCGGG+TGG + chr2_1:55392983-55393002 None:intergenic 40.0%
!! CGGTGCTATAAACTATTGTC+GGG + chr2_1:55392986-55393005 None:intergenic 40.0%
!! GCGGTGCTATAAACTATTGT+CGG + chr2_1:55392987-55393006 None:intergenic 40.0%
ATCTTGTGAAAGACCTTCCA+AGG + chr2_1:55393311-55393330 None:intergenic 40.0%
CACAAGATTTATGTCTCTGC+TGG - chr2_1:55393323-55393342 Msa0212960:intron 40.0%
AGAGAAAACTGAAGATGGGA+AGG - chr2_1:55393657-55393676 Msa0212960:intron 40.0%
GCTGAATGGAGAGAAAAGTT+TGG - chr2_1:55393772-55393791 Msa0212960:intron 40.0%
TGCATAGCCGATGTTGAAAA+TGG + chr2_1:55393943-55393962 None:intergenic 40.0%
AATCTGATCCTGAATGCACT+AGG + chr2_1:55393992-55394011 None:intergenic 40.0%
!!! GACTGGCGTATTTTTTAGGA+AGG - chr2_1:55394033-55394052 Msa0212960:intron 40.0%
AGGACTAAGCAAGAGATTTG+TGG - chr2_1:55394053-55394072 Msa0212960:intron 40.0%
GGACTAAGCAAGAGATTTGT+GGG - chr2_1:55394054-55394073 Msa0212960:intron 40.0%
! AAAGCATTATGCAACGAGAG+TGG - chr2_1:55394102-55394121 Msa0212960:intron 40.0%
TTAGGTGTGGAAAGCAAGTT+TGG - chr2_1:55394209-55394228 Msa0212960:intron 40.0%
!! TGGGTATTGGAAGAGTTGAA+TGG - chr2_1:55394234-55394253 Msa0212960:intron 40.0%
GGTTGGATGATGAGAAATTG+TGG - chr2_1:55394255-55394274 Msa0212960:intron 40.0%
TGGTCATTGATAGGTGTGAA+TGG - chr2_1:55394275-55394294 Msa0212960:intron 40.0%
GGTGTGAATGGACAAAATCT+TGG - chr2_1:55394287-55394306 Msa0212960:intron 40.0%
AGCATATTCATACCAAGTGG+TGG + chr2_1:55394386-55394405 None:intergenic 40.0%
! GCTATGCCAATAAGCTTGTT+AGG - chr2_1:55394573-55394592 Msa0212960:intron 40.0%
GCGATATAGAGTAGCAAAGT+TGG - chr2_1:55394707-55394726 Msa0212960:intron 40.0%
GAGATGCAGCAATAAGATCA+AGG + chr2_1:55394981-55395000 None:intergenic 40.0%
ACTCACCTATGGAATTTGTG+AGG - chr2_1:55395286-55395305 Msa0212960:CDS 40.0%
! TGCAGCTTTTCTGATAACTC+AGG + chr2_1:55395332-55395351 None:intergenic 40.0%
CTTAATCATACCGTTGACAG+AGG + chr2_1:55395404-55395423 None:intergenic 40.0%
CAACTGAAAAATAGCTTGGC+AGG - chr2_1:55395629-55395648 Msa0212960:intron 40.0%
! ACTTTTGTCTCATTCCCTCT+TGG + chr2_1:55395801-55395820 None:intergenic 40.0%
! CTAAGAGTTTAAGACAGTGG+AGG - chr2_1:55395881-55395900 Msa0212960:intron 40.0%
! AAGAGTTTAAGACAGTGGAG+GGG - chr2_1:55395883-55395902 Msa0212960:intron 40.0%
GGGGTTATTTGTCAATAGGT+TGG - chr2_1:55395910-55395929 Msa0212960:intron 40.0%
CTAGACTCTCTAATTCCTAG+AGG - chr2_1:55395945-55395964 Msa0212960:intron 40.0%
ACTCTCTAATTCCTAGAGGT+TGG - chr2_1:55395949-55395968 Msa0212960:intron 40.0%
CTCTCTAATTCCTAGAGGTT+GGG - chr2_1:55395950-55395969 Msa0212960:intron 40.0%
TTTCTCGGACAATCTCACAA+GGG + chr2_1:55396133-55396152 None:intergenic 40.0%
! TTTTCTCGGACAATCTCACA+AGG + chr2_1:55396134-55396153 None:intergenic 40.0%
CAAGGTTTCCATAGCTTACA+AGG - chr2_1:55396752-55396771 Msa0212960:intron 40.0%
AGATGCAACCTTGTAAGCTA+TGG + chr2_1:55396763-55396782 None:intergenic 40.0%
TTCCAAGAATTTCAACGGAC+AGG - chr2_1:55396903-55396922 Msa0212960:intron 40.0%
TCCAAGAATTTCAACGGACA+GGG - chr2_1:55396904-55396923 Msa0212960:intron 40.0%
!!! GATTTTGGTTTTGACCTCCA+TGG + chr2_1:55397224-55397243 None:intergenic 40.0%
GTGAAACAAACACTGTCACT+TGG + chr2_1:55397254-55397273 None:intergenic 40.0%
CACCAAGTGTAGGAACATTT+CGG + chr2_1:55397304-55397323 None:intergenic 40.0%
TAGACATGAACACCAAGTGT+AGG + chr2_1:55397314-55397333 None:intergenic 40.0%
ATGGTTGAGCACAATCTGAA+AGG - chr2_1:55397416-55397435 Msa0212960:CDS 40.0%
AGACAAACGCAGATGATCAA+AGG - chr2_1:55397589-55397608 Msa0212960:intron 40.0%
!! GTTTGTTGTTTCTGGTGAGA+AGG + chr2_1:55397657-55397676 None:intergenic 40.0%
! AGATGGCACAATTGTTGTTC+AGG + chr2_1:55397774-55397793 None:intergenic 40.0%
TTTGAAGAGAGGTTTCTGAG+GGG + chr2_1:55397955-55397974 None:intergenic 40.0%
!!! GTTTTGAAGAGAGGTTTCTG+AGG + chr2_1:55397957-55397976 None:intergenic 40.0%
TCTACTCAAACCACTCATCA+CGG - chr2_1:55398029-55398048 Msa0212960:CDS 40.0%
TTATCTTAGACCGTGATGAG+TGG + chr2_1:55398042-55398061 None:intergenic 40.0%
! ATAGGATATGACTTGCACAC+AGG - chr2_1:55398133-55398152 Msa0212960:CDS 40.0%
! ATATGACTTGCACACAGGAA+GGG - chr2_1:55398138-55398157 Msa0212960:CDS 40.0%
AGACAGTTTGGGAGAACTTA+TGG + chr2_1:55398492-55398511 None:intergenic 40.0%
! CTTCTCTTAGAGAGCATGTT+TGG + chr2_1:55398562-55398581 None:intergenic 40.0%
CCCAAGAGGAAAAATGTCTT+TGG - chr2_1:55398649-55398668 Msa0212960:intron 40.0%
! CCCAAAGACATTTTTCCTCT+TGG + chr2_1:55398653-55398672 None:intergenic 40.0%
! AACAAGAGACTAGCCATATG+TGG - chr2_1:55398678-55398697 Msa0212960:intron 40.0%
! ACAAGAGACTAGCCATATGT+GGG - chr2_1:55398679-55398698 Msa0212960:intron 40.0%
TGTGTTAGTCCCAATGTTGA+AGG - chr2_1:55398708-55398727 Msa0212960:intron 40.0%
TCTATGGCACCTTCAACATT+GGG + chr2_1:55398720-55398739 None:intergenic 40.0%
ATCTATGGCACCTTCAACAT+TGG + chr2_1:55398721-55398740 None:intergenic 40.0%
GGAGAACATGAAATTTACGG+TGG - chr2_1:55398932-55398951 Msa0212960:intron 40.0%
GTGGACCAAATGCTACATAT+TGG - chr2_1:55398951-55398970 Msa0212960:CDS 40.0%
GTGGGAGAACTATAAACTCA+CGG - chr2_1:55398991-55399010 Msa0212960:CDS 40.0%
GACCATGAGACTTCAAGAAA+AGG - chr2_1:55399170-55399189 Msa0212960:CDS 40.0%
GGAAAAAGTCATCATGGTGG+TGG + chr2_1:55392483-55392502 None:intergenic 45.0%
CACAGCAACCTTAAAGACAG+TGG + chr2_1:55392596-55392615 None:intergenic 45.0%
! TTTAAGGTTGCTGTGTTGGG+TGG - chr2_1:55392601-55392620 Msa0212960:three_prime_UTR 45.0%
ACACTCTTTGAGTCTGCTAG+AGG - chr2_1:55392801-55392820 Msa0212960:three_prime_UTR 45.0%
TGTACTCATCATGGGAACCT+TGG - chr2_1:55393291-55393310 Msa0212960:intron 45.0%
!! AAGGAGCTGCATTTTGACCA+TGG - chr2_1:55393676-55393695 Msa0212960:intron 45.0%
!! GGCTTGCTAACCGAGAAAAA+CGG + chr2_1:55393706-55393725 None:intergenic 45.0%
! TGGCTCGTCTAGTTCAAGAA+TGG - chr2_1:55393731-55393750 Msa0212960:intron 45.0%
! GGCTCGTCTAGTTCAAGAAT+GGG - chr2_1:55393732-55393751 Msa0212960:intron 45.0%
TAGTTCAAGAATGGGAGTCG+AGG - chr2_1:55393740-55393759 Msa0212960:intron 45.0%
AGTTCAAGAATGGGAGTCGA+GGG - chr2_1:55393741-55393760 Msa0212960:intron 45.0%
! ACATCGGCTATGCATGTACA+AGG - chr2_1:55393949-55393968 Msa0212960:intron 45.0%
TGACAAAGCCTAGTGCATTC+AGG - chr2_1:55393981-55394000 Msa0212960:intron 45.0%
AAGAGATTTGTGGGTGTTCC+AGG - chr2_1:55394063-55394082 Msa0212960:intron 45.0%
! TGTGGAAAGCAAGTTTGGTG+TGG - chr2_1:55394214-55394233 Msa0212960:intron 45.0%
!! GTGGAAAGCAAGTTTGGTGT+GGG - chr2_1:55394215-55394234 Msa0212960:intron 45.0%
!! AGCAAGTTTGGTGTGGGTAT+TGG - chr2_1:55394221-55394240 Msa0212960:intron 45.0%
ACTAGGATTGCAGATGTCAC+AGG - chr2_1:55394353-55394372 Msa0212960:intron 45.0%
ATACAACAACAACCAAGCCG+TGG + chr2_1:55395205-55395224 None:intergenic 45.0%
TGCAGCCTCACAAATTCCAT+AGG + chr2_1:55395294-55395313 None:intergenic 45.0%
AGCTGCACAATCTTCCTGTT+AGG - chr2_1:55395345-55395364 Msa0212960:intron 45.0%
! TTTTGCAGAGCCTCTGTCAA+CGG - chr2_1:55395391-55395410 Msa0212960:intron 45.0%
GCTTGGCAGGAATAAGTTTG+TGG - chr2_1:55395642-55395661 Msa0212960:intron 45.0%
TTAAGACAGTGGAGGGGATT+TGG - chr2_1:55395889-55395908 Msa0212960:intron 45.0%
TAAGACAGTGGAGGGGATTT+GGG - chr2_1:55395890-55395909 Msa0212960:intron 45.0%
TCCATTGCTTGCGATCTATG+AGG - chr2_1:55396601-55396620 Msa0212960:intron 45.0%
ACCTCATAGATCGCAAGCAA+TGG + chr2_1:55396605-55396624 None:intergenic 45.0%
! TCTATGAGGTGTCAACTCAG+TGG - chr2_1:55396615-55396634 Msa0212960:intron 45.0%
! AGTTTGACTTTGTCCCCTCA+AGG - chr2_1:55396642-55396661 Msa0212960:intron 45.0%
! GTTTGACTTTGTCCCCTCAA+GGG - chr2_1:55396643-55396662 Msa0212960:intron 45.0%
ATTTGAACTCCGTCCCTTGA+GGG + chr2_1:55396659-55396678 None:intergenic 45.0%
TCCCTGTCCGTTGAAATTCT+TGG + chr2_1:55396908-55396927 None:intergenic 45.0%
GTGTCCGCTAGATACTACAT+AGG + chr2_1:55397059-55397078 None:intergenic 45.0%
! GTATCTAGCGGACACTTTAC+TGG - chr2_1:55397064-55397083 Msa0212960:intron 45.0%
AGTATACACCTAAGTGCACC+CGG - chr2_1:55397119-55397138 Msa0212960:intron 45.0%
! CAACAGAGAGGTCCATGTTT+TGG + chr2_1:55397146-55397165 None:intergenic 45.0%
CAAGTGTAGGAACATTTCGG+AGG + chr2_1:55397301-55397320 None:intergenic 45.0%
CTCCGAAATGTTCCTACACT+TGG - chr2_1:55397299-55397318 Msa0212960:intron 45.0%
CGTTTGTCTCGCTCTATTCA+GGG + chr2_1:55397578-55397597 None:intergenic 45.0%
CGCAGATGATCAAAGGAAGA+AGG - chr2_1:55397596-55397615 Msa0212960:intron 45.0%
GTCAGCTCAAGCATAGATGT+TGG + chr2_1:55397635-55397654 None:intergenic 45.0%
! GGCACAATTGTTGTTCAGGA+TGG + chr2_1:55397770-55397789 None:intergenic 45.0%
CAACAATTGTGCCATCTTGC+TGG - chr2_1:55397777-55397796 Msa0212960:intron 45.0%
TTTGGACCAGATGCATGCTA+AGG - chr2_1:55397845-55397864 Msa0212960:intron 45.0%
CTAATGCCTTAGCATGCATC+TGG + chr2_1:55397854-55397873 None:intergenic 45.0%
! GAGCTTTCTCTGGCTTATGA+AGG + chr2_1:55397896-55397915 None:intergenic 45.0%
! GATATGACTTGCACACAGGA+AGG - chr2_1:55398137-55398156 Msa0212960:CDS 45.0%
! CAAGAGACTAGCCATATGTG+GGG - chr2_1:55398680-55398699 Msa0212960:intron 45.0%
AACACAGAAGTCCCCACATA+TGG + chr2_1:55398694-55398713 None:intergenic 45.0%
!! GTTGAAGGTGCCATAGATAG+TGG - chr2_1:55398723-55398742 Msa0212960:intron 45.0%
!! AGGTGCCATAGATAGTGGAT+TGG - chr2_1:55398728-55398747 Msa0212960:intron 45.0%
TGCTGCCAATCCACTATCTA+TGG + chr2_1:55398736-55398755 None:intergenic 45.0%
GGAGAACTATAAACTCACGG+TGG - chr2_1:55398994-55399013 Msa0212960:CDS 45.0%
!! CAGCTATAGTAGACTAGCCT+TGG + chr2_1:55399038-55399057 None:intergenic 45.0%
!! AATAAAAAAAATGATAAATT+TGG + chr2_1:55392663-55392682 None:intergenic 5.0%
!!! CTATTTTTTATTTATTTAAT+GGG - chr2_1:55392860-55392879 Msa0212960:three_prime_UTR 5.0%
CTCATCATGGGAACCTTGGA+AGG - chr2_1:55393295-55393314 Msa0212960:intron 50.0%
!! CCATGGTGCTCCGTTTTTCT+CGG - chr2_1:55393693-55393712 Msa0212960:intron 50.0%
TGAACTAGACGAGCCACTTC+AGG + chr2_1:55393727-55393746 None:intergenic 50.0%
GTTCAAGAATGGGAGTCGAG+GGG - chr2_1:55393742-55393761 Msa0212960:intron 50.0%
GGCTATGCATGTACAAGGCA+TGG - chr2_1:55393954-55393973 Msa0212960:intron 50.0%
GGATTGCAGATGTCACAGGA+CGG - chr2_1:55394357-55394376 Msa0212960:intron 50.0%
AACAACAACCAAGCCGTGGT+CGG + chr2_1:55395201-55395220 None:intergenic 50.0%
TCCTGTTAGGCCATGTTTCG+CGG - chr2_1:55395358-55395377 Msa0212960:intron 50.0%
GCCATGTTTCGCGGTTATGA+TGG - chr2_1:55395367-55395386 Msa0212960:intron 50.0%
GCCATCATAACCGCGAAACA+TGG + chr2_1:55395371-55395390 None:intergenic 50.0%
AAGACAGTGGAGGGGATTTG+GGG - chr2_1:55395891-55395910 Msa0212960:intron 50.0%
CTTCTGCTAACCCAACCTCT+AGG + chr2_1:55395963-55395982 None:intergenic 50.0%
GTTGGGCTTACTGTGATAGC+AGG - chr2_1:55396500-55396519 Msa0212960:intron 50.0%
TACTGTGATAGCAGGAAGCC+AGG - chr2_1:55396508-55396527 Msa0212960:intron 50.0%
TTTGAACTCCGTCCCTTGAG+GGG + chr2_1:55396658-55396677 None:intergenic 50.0%
GATTTGAACTCCGTCCCTTG+AGG + chr2_1:55396660-55396679 None:intergenic 50.0%
GCGGACACTTTACTGGATAG+TGG - chr2_1:55397071-55397090 Msa0212960:intron 50.0%
!! AGAGGTCCATGTTTTGGACC+GGG + chr2_1:55397140-55397159 None:intergenic 50.0%
!! GAGAGGTCCATGTTTTGGAC+CGG + chr2_1:55397141-55397160 None:intergenic 50.0%
GTGCTTTGTGTCCATGTCCA+TGG - chr2_1:55397204-55397223 Msa0212960:intron 50.0%
CTTTGTGTCCATGTCCATGG+AGG - chr2_1:55397207-55397226 Msa0212960:intron 50.0%
!! GGTTTTGACCTCCATGGACA+TGG + chr2_1:55397218-55397237 None:intergenic 50.0%
GCGTTTGTCTCGCTCTATTC+AGG + chr2_1:55397579-55397598 None:intergenic 50.0%
GCATGCATCTGGTCCAAACA+TGG + chr2_1:55397843-55397862 None:intergenic 50.0%
ATGGAGCTCAGAGCTTTCTC+TGG + chr2_1:55397906-55397925 None:intergenic 50.0%
!! GTGGATTGGCAGCAGCTTTA+AGG - chr2_1:55398742-55398761 Msa0212960:intron 50.0%
GATTACTCACCGCTCAACCA+AGG - chr2_1:55399018-55399037 Msa0212960:CDS 50.0%
!! GTAGACTAGCCTTGGTTGAG+CGG + chr2_1:55399030-55399049 None:intergenic 50.0%
AAGGTTGCTGTGTTGGGTGG+TGG - chr2_1:55392604-55392623 Msa0212960:three_prime_UTR 55.0%
TTTGAGTCTGCTAGAGGCCC+TGG - chr2_1:55392807-55392826 Msa0212960:three_prime_UTR 55.0%
! TTTGGGACATGCGTCCACCA+GGG + chr2_1:55392827-55392846 None:intergenic 55.0%
GTGGACGCATGTCCCAAAGA+AGG - chr2_1:55392829-55392848 Msa0212960:three_prime_UTR 55.0%
TTAGCCATTGCGGTCCTACC+TGG - chr2_1:55393049-55393068 Msa0212960:CDS 55.0%
GTTAATCCCTCCAGCCAGGT+AGG + chr2_1:55393066-55393085 None:intergenic 55.0%
AGAGGTTAATCCCTCCAGCC+AGG + chr2_1:55393070-55393089 None:intergenic 55.0%
AATTGCGCGCAGAGGATACC+TGG - chr2_1:55393092-55393111 Msa0212960:CDS 55.0%
! CCGAGAAAAACGGAGCACCA+TGG + chr2_1:55393696-55393715 None:intergenic 55.0%
CTCGGTTAGCAAGCCTGAAG+TGG - chr2_1:55393711-55393730 Msa0212960:intron 55.0%
TCGCTGATCGATACCGACCA+CGG - chr2_1:55395185-55395204 Msa0212960:intron 55.0%
ACCGCGAAACATGGCCTAAC+AGG + chr2_1:55395362-55395381 None:intergenic 55.0%
TACCTTGCAGTAGAACGGCC+TGG + chr2_1:55396529-55396548 None:intergenic 55.0%
GACTTTGTCCCCTCAAGGGA+CGG - chr2_1:55396647-55396666 Msa0212960:intron 55.0%
!! GTTTTGGACCGGGTGCACTT+AGG + chr2_1:55397130-55397149 None:intergenic 55.0%
AGTGCACCCGGTCCAAAACA+TGG - chr2_1:55397131-55397150 Msa0212960:intron 55.0%
TCTTGGGCAATGCTAGCAGC+TGG + chr2_1:55398636-55398655 None:intergenic 55.0%
AGCTGCTAGCATTGCCCAAG+AGG - chr2_1:55398635-55398654 Msa0212960:intron 55.0%
!! CTTTGGGACATGCGTCCACC+AGG + chr2_1:55392828-55392847 None:intergenic 60.0%
ACCTCTGCAATTGCGCGCAG+AGG - chr2_1:55393084-55393103 Msa0212960:CDS 60.0%
TCCTCTGCGCGCAATTGCAG+AGG + chr2_1:55393088-55393107 None:intergenic 60.0%
CGAGGGGTCTCGTAGCTGAA+TGG - chr2_1:55393758-55393777 Msa0212960:intron 60.0%
ACAGGACGGTTGCCACCACT+TGG - chr2_1:55394371-55394390 Msa0212960:intron 60.0%
GATCGATACCGACCACGGCT+TGG - chr2_1:55395190-55395209 Msa0212960:intron 60.0%
AGCCAGGCCGTTCTACTGCA+AGG - chr2_1:55396524-55396543 Msa0212960:intron 60.0%
GAGTCTGCTAGAGGCCCTGG+TGG - chr2_1:55392810-55392829 Msa0212960:three_prime_UTR 65.0%
CCAGCCAGGTAGGACCGCAA+TGG + chr2_1:55393056-55393075 None:intergenic 65.0%
CCATTGCGGTCCTACCTGGC+TGG - chr2_1:55393053-55393072 Msa0212960:CDS 65.0%
TTGCGGTCCTACCTGGCTGG+AGG - chr2_1:55393056-55393075 Msa0212960:CDS 65.0%
TGCGGTCCTACCTGGCTGGA+GGG - chr2_1:55393057-55393076 Msa0212960:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 55392464 55399324 55392464 ID=Msa0212960;Name=Msa0212960
chr2_1 mRNA 55392464 55399324 55392464 ID=Msa0212960-mRNA-1;Parent=Msa0212960;Name=Msa0212960-mRNA-1;_AED=0.12;_eAED=0.12;_QI=89|0.87|0.88|1|1|1|9|530|397
chr2_1 exon 55392464 55393168 55392464 ID=Msa0212960-mRNA-1:exon:15404;Parent=Msa0212960-mRNA-1
chr2_1 exon 55394821 55394994 55394821 ID=Msa0212960-mRNA-1:exon:15403;Parent=Msa0212960-mRNA-1
chr2_1 exon 55395243 55395331 55395243 ID=Msa0212960-mRNA-1:exon:15402;Parent=Msa0212960-mRNA-1
chr2_1 exon 55396376 55396473 55396376 ID=Msa0212960-mRNA-1:exon:15401;Parent=Msa0212960-mRNA-1
chr2_1 exon 55397396 55397575 55397396 ID=Msa0212960-mRNA-1:exon:15400;Parent=Msa0212960-mRNA-1
chr2_1 exon 55397665 55397737 55397665 ID=Msa0212960-mRNA-1:exon:15399;Parent=Msa0212960-mRNA-1
chr2_1 exon 55397951 55398179 55397951 ID=Msa0212960-mRNA-1:exon:15398;Parent=Msa0212960-mRNA-1
chr2_1 exon 55398938 55399037 55398938 ID=Msa0212960-mRNA-1:exon:15397;Parent=Msa0212960-mRNA-1
chr2_1 exon 55399160 55399324 55399160 ID=Msa0212960-mRNA-1:exon:15396;Parent=Msa0212960-mRNA-1
chr2_1 five_prime_UTR 55399236 55399324 55399236 ID=Msa0212960-mRNA-1:five_prime_utr;Parent=Msa0212960-mRNA-1
chr2_1 CDS 55399160 55399235 55399160 ID=Msa0212960-mRNA-1:cds;Parent=Msa0212960-mRNA-1
chr2_1 CDS 55398938 55399037 55398938 ID=Msa0212960-mRNA-1:cds;Parent=Msa0212960-mRNA-1
chr2_1 CDS 55397951 55398179 55397951 ID=Msa0212960-mRNA-1:cds;Parent=Msa0212960-mRNA-1
chr2_1 CDS 55397665 55397737 55397665 ID=Msa0212960-mRNA-1:cds;Parent=Msa0212960-mRNA-1
chr2_1 CDS 55397396 55397575 55397396 ID=Msa0212960-mRNA-1:cds;Parent=Msa0212960-mRNA-1
chr2_1 CDS 55396376 55396473 55396376 ID=Msa0212960-mRNA-1:cds;Parent=Msa0212960-mRNA-1
chr2_1 CDS 55395243 55395331 55395243 ID=Msa0212960-mRNA-1:cds;Parent=Msa0212960-mRNA-1
chr2_1 CDS 55394821 55394994 55394821 ID=Msa0212960-mRNA-1:cds;Parent=Msa0212960-mRNA-1
chr2_1 CDS 55392994 55393168 55392994 ID=Msa0212960-mRNA-1:cds;Parent=Msa0212960-mRNA-1
chr2_1 three_prime_UTR 55392464 55392993 55392464 ID=Msa0212960-mRNA-1:three_prime_utr;Parent=Msa0212960-mRNA-1
Gene Sequence

>Msa0212960

ATGTCTGTTTCAGAATCCAACAACCAAAAAACAATGACTTCCACTGTCTTTAAGGTTGCTGTGTTGGGTGGTGGAATTTCAGGAGCAGTGTGTGCATCAACTCTTGCTAGAAATGGTGTTTCTGTTACACTCTTTGAGTCTGCTAGAGGCCCTGGTGGACGCATGTCCCAAAGAAGTGTTAATTTTAAGGAGAGTCCTAAGTTTCTTATTTTCTGGAAATCTAGAGAGAAAACTGAAGATGGGAAGGAGCTGCATTTTGACCATGGTGCTCCGTTTTTCTCGGTTAGCAAGCCTGAAGTGGCTCGTCTAGTTCAAGAATGGGAGTCGAGGGGTCTCGTAGCTGAATGGAGAGAAAAGTTTGGTTCATTTGATATTCAAACCATTAAATTTGACAACATAGAGCAGGAAGGACTAAGCAAGAGATTTGTGGGTGTTCCAGGCATGAATTCTATATGCAAAGCATTATGCAACGAGAGTGGTGTGGAAAGCAAGTTTGGTGTGGGTATTGGAAGAGTTGAATGGTTGGATGATGAGAAATTGTGGTCATTGATAGGTGTGAATGGACAAAATCTTGGTCAGTTTAAAGGACTTGTTGCATCAGATAAGAACATAGTTTCTACTAGGATTGCAGATGTCACAGGACGGTTGCCACCACTTGATTTAAAGTTGTTGCCTGAGTTATCAGAAAAGCTGCACAATCTTCCTGTTAGGCCATGTTTCGCGGTTATGATGGCTTTTGCAGAGCCTCTGTCAACGATTCCAGTTAAAGGCTTCTCAATTAAAAATTCTAAAGTTCTAAGTTGGGCTTACTGTGATAGCAGGAAGCCAGGCCGTTCTACTGCAAGTGAAAGATGGGTTCTTCATTCAACAGCAGAATTTGCAGAGAGTATAATTGCTCAAACGGGACTCAAGAAGCCCTCAGACGTTACATTGAGTAAAGTGGCTGAAGAGCTTTTCCAAGAATTTCAACGGACAGGGACTAACATATCACAACCTTTTTTCAAGAAAGCCCATAGATGGGGAAGTGCATTTCCAGCTGCTAGCATTGCCCAAGAGGAAAAATGTCTTTGGGACAGAAACAAGAGACTAGCCATATGTGGGGACTTCTGTGTTAGTCCCAATGTTGAAGGTGCCATAGATAGTGGATTGGCAGCAGCTTTAAGGCTTCAAGATATTAGTTCCAGTTGTTTATAG

Protein sequence

>Msa0212960

MSVSESNNQKTMTSTVFKVAVLGGGISGAVCASTLARNGVSVTLFESARGPGGRMSQRSVNFKESPKFLIFWKSREKTEDGKELHFDHGAPFFSVSKPEVARLVQEWESRGLVAEWREKFGSFDIQTIKFDNIEQEGLSKRFVGVPGMNSICKALCNESGVESKFGVGIGRVEWLDDEKLWSLIGVNGQNLGQFKGLVASDKNIVSTRIADVTGRLPPLDLKLLPELSEKLHNLPVRPCFAVMMAFAEPLSTIPVKGFSIKNSKVLSWAYCDSRKPGRSTASERWVLHSTAEFAESIIAQTGLKKPSDVTLSKVAEELFQEFQRTGTNISQPFFKKAHRWGSAFPAASIAQEEKCLWDRNKRLAICGDFCVSPNVEGAIDSGLAAALRLQDISSSCL*