AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1178970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178970 MtrunA17_Chr8g0343431 94.231 312 14 3 1 312 27 334 0.0 587
Msa1178970 MtrunA17_Chr8g0343401 68.493 146 8 1 167 312 14 121 5.98e-60 187
Msa1178970 MtrunA17_Chr8g0343411 73.134 67 4 1 98 164 2 54 2.45e-23 91.7
Msa1178970 MtrunA17_Chr4g0000041 44.444 72 40 0 203 274 469 540 7.38e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178970 AT1G72640.1 58.333 300 108 3 25 309 14 311 4.04e-116 337
Msa1178970 AT1G72640.2 57.912 297 113 2 25 309 14 310 5.91e-112 327
Msa1178970 AT1G72640.3 59.244 238 85 2 25 250 14 251 6.85e-88 264
Msa1178970 AT1G72640.4 58.242 182 64 2 25 194 14 195 1.60e-59 189
Msa1178970 AT1G16720.1 32.787 122 66 3 202 307 477 598 9.37e-11 63.2

Find 76 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATACCATTTCCTTAATTT+TGG 0.088838 8_1:-11883328 None:intergenic
TAATTCACCGGTCCTGATTA+TGG 0.316455 8_1:-11886157 None:intergenic
TAAGACATGCAGTCAAAATA+TGG 0.328788 8_1:+11886575 Msa1178970:three_prime_UTR
AGAGTTGCACTTGAAGCCTT+TGG 0.333886 8_1:+11884999 Msa1178970:CDS
TGAAGTTAGGGATGCAGTTC+TGG 0.336303 8_1:+11884036 Msa1178970:CDS
TCAAAGCAGAAGATGAAGTT+AGG 0.347098 8_1:+11884023 Msa1178970:intron
TCTAGTGTGGGTAGCCTTCA+AGG 0.356340 8_1:+11885933 Msa1178970:CDS
TGTAAACAAATCTCGAATAA+AGG 0.361254 8_1:+11884959 Msa1178970:CDS
AGCAAGATGAATCTGTATTA+AGG 0.362895 8_1:+11886115 Msa1178970:CDS
TCCAGATTGGAAAGAGTGTT+TGG 0.369080 8_1:+11886504 Msa1178970:CDS
CTGGAGTTTGTCCCACAAAC+TGG 0.373437 8_1:+11886445 Msa1178970:CDS
TCAGTTTATAGTGGTAAAAC+TGG 0.374312 8_1:+11886051 Msa1178970:CDS
CAAATTCTTGATTACATTGA+AGG 0.375448 8_1:+11883116 Msa1178970:CDS
TTCACTTCATCAACACCATT+TGG 0.402060 8_1:+11882996 Msa1178970:CDS
GCATGGCAAACGAAAAGAAA+TGG 0.417515 8_1:-11883068 None:intergenic
GCCAAACACTCTTTCCAATC+TGG 0.419948 8_1:-11886505 None:intergenic
GTGGTCCAAAATTAAGGAAA+TGG 0.421374 8_1:+11883323 Msa1178970:CDS
ACAAACCAACATATGAAGAT+TGG 0.433596 8_1:-11886670 None:intergenic
GAGGAGACCAACAATGGTCT+TGG 0.435328 8_1:+11882932 Msa1178970:exon
TCATATTTGAAGTGGCCAAT+GGG 0.437864 8_1:+11886470 Msa1178970:CDS
TCTGTTGTTGAATAGAAAAG+AGG 0.454394 8_1:-11883021 None:intergenic
CAAATCTCGAATAAAGGCCT+TGG 0.457321 8_1:+11884965 Msa1178970:CDS
CTTTATGTATCAAGTGCAAA+TGG 0.457396 8_1:+11886736 Msa1178970:three_prime_UTR
CCACATGCTTTACCCCTTGA+AGG 0.458656 8_1:-11885947 None:intergenic
TTGCAGTTGTCAGTTTATAG+TGG 0.466226 8_1:+11886042 Msa1178970:intron
TAGAACTTTATTAACATATG+TGG 0.467523 8_1:-11886852 None:intergenic
TTTGTTTCTTCCCGCTAGAA+TGG 0.471044 8_1:-11882901 None:intergenic
GAATTCCTTACACCATAATC+AGG 0.473114 8_1:+11886145 Msa1178970:CDS
GCACAAACCAAGACCATTGT+TGG 0.478044 8_1:-11882939 None:intergenic
CAAATATGAGTCCAGTTTGT+GGG 0.478466 8_1:-11886456 None:intergenic
ACAGATGGAGATAGTGAGAT+TGG 0.481708 8_1:+11884061 Msa1178970:CDS
TTACAGGGTTGTGCAGCTAC+TGG 0.493049 8_1:+11886379 Msa1178970:intron
TGGAGATAGTGAGATTGGTC+AGG 0.495077 8_1:+11884066 Msa1178970:CDS
CCGGTCCTGATTATGGTGTA+AGG 0.498182 8_1:-11886150 None:intergenic
CTCATATTTGAAGTGGCCAA+TGG 0.498498 8_1:+11886469 Msa1178970:CDS
TAATACAGATTCATCTTGCT+CGG 0.502809 8_1:-11886112 None:intergenic
GGGAAAATAAAATTCCAGAT+TGG 0.508417 8_1:+11886491 Msa1178970:CDS
GCAGTCCAATCTTCATATGT+TGG 0.513423 8_1:+11886665 Msa1178970:three_prime_UTR
CAAAGCAGAAGATGAAGTTA+GGG 0.519708 8_1:+11884024 Msa1178970:intron
GAATCTGTATTAAGGAGCTC+AGG 0.521293 8_1:+11886123 Msa1178970:CDS
CTAGTGTGGGTAGCCTTCAA+GGG 0.521406 8_1:+11885934 Msa1178970:CDS
AAAATGAAGATACACGAACT+TGG 0.523678 8_1:-11886709 None:intergenic
TCAAATATGAGTCCAGTTTG+TGG 0.524055 8_1:-11886457 None:intergenic
AATAGAAAAGAGGAACCAAA+TGG 0.536283 8_1:-11883011 None:intergenic
TCGAATAAAGGCCTTGGTGA+AGG 0.540785 8_1:+11884971 Msa1178970:CDS
AGAGTGTTTGGCGACAATGA+TGG 0.548202 8_1:+11886516 Msa1178970:CDS
GTTCGTATGTGTAAAAGCAC+TGG 0.556625 8_1:+11886426 Msa1178970:CDS
CTTATGAATGTTCATTGAAG+AGG 0.559175 8_1:-11886556 None:intergenic
GTAAAGCCTTGCTTCCCACC+AGG 0.563520 8_1:-11886189 None:intergenic
GATACACCTGGTGGGAAGCA+AGG 0.563577 8_1:+11886183 Msa1178970:CDS
CCAAAATTAAGGAAATGGTA+TGG 0.572471 8_1:+11883328 Msa1178970:CDS
TACCTCAACATAATTTCCAA+AGG 0.573481 8_1:-11885015 None:intergenic
AGGTGTATCTTGTAATTCAC+CGG 0.575204 8_1:-11886169 None:intergenic
GTTATGGCAAAGTCAATGAC+AGG 0.581417 8_1:+11885138 Msa1178970:intron
CTCCTCTCAACGCTTTCTTG+AGG 0.581697 8_1:-11885182 None:intergenic
ATCACCATCATCACTAGCTG+TGG 0.584131 8_1:-11883383 None:intergenic
GCATGTGGTCCTCTTATCAC+AGG 0.589532 8_1:+11885962 Msa1178970:CDS
GATGCAGTTCTGGTAACAGA+TGG 0.589928 8_1:+11884046 Msa1178970:CDS
AACTGGACTCATATTTGAAG+TGG 0.599321 8_1:+11886462 Msa1178970:CDS
GATAGACTGTACCTTGTCAA+AGG 0.604887 8_1:-11886211 None:intergenic
AATACATTATCCATTCTAGC+GGG 0.613946 8_1:+11882891 None:intergenic
CCTTACACCATAATCAGGAC+CGG 0.614074 8_1:+11886150 Msa1178970:CDS
ACTTCCACAGCTAGTGATGA+TGG 0.621845 8_1:+11883379 Msa1178970:CDS
TTCCTCAAGAAAGCGTTGAG+AGG 0.628467 8_1:+11885180 Msa1178970:CDS
GCAAGGCTTTACCTTTGACA+AGG 0.631220 8_1:+11886200 Msa1178970:CDS
TAGTGTGGGTAGCCTTCAAG+GGG 0.640736 8_1:+11885935 Msa1178970:CDS
CATATTTGAAGTGGCCAATG+GGG 0.643386 8_1:+11886471 Msa1178970:CDS
AGCCTTTGGAAATTATGTTG+AGG 0.649082 8_1:+11885013 Msa1178970:CDS
AAGCTTTGTGAGTGAAAGTG+TGG 0.651347 8_1:-11882967 None:intergenic
AAATACATTATCCATTCTAG+CGG 0.657016 8_1:+11882890 None:intergenic
AATGGTGTTGATGAAGTGAA+AGG 0.657210 8_1:-11882993 None:intergenic
CCTTCAAGGGGTAAAGCATG+TGG 0.665023 8_1:+11885947 Msa1178970:CDS
CGGTTGGAGGAGACCAACAA+TGG 0.670595 8_1:+11882926 Msa1178970:exon
GAATTACAAGATACACCTGG+TGG 0.711342 8_1:+11886174 Msa1178970:CDS
AATTACAAGATACACCTGGT+GGG 0.712001 8_1:+11886175 Msa1178970:CDS
GGTGAATTACAAGATACACC+TGG 0.728213 8_1:+11886171 Msa1178970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATGTTTTTCAATTTC+TGG + chr8_1:11883260-11883279 Msa1178970:intron 15.0%
!!! TTTTATGTTTTTCAATTTCT+GGG + chr8_1:11883261-11883280 Msa1178970:intron 15.0%
!!! TTGTTTTCATATACAATAAA+GGG + chr8_1:11883554-11883573 Msa1178970:intron 15.0%
!! ATACAATATTGAAGAATTTA+TGG + chr8_1:11883766-11883785 Msa1178970:intron 15.0%
!!! AATCACTATATATCATTTTA+GGG - chr8_1:11883915-11883934 None:intergenic 15.0%
!! TTATTATATGCAATATATCA+AGG - chr8_1:11884180-11884199 None:intergenic 15.0%
!! AAATGTTGGAAATTTAAAAA+AGG - chr8_1:11884295-11884314 None:intergenic 15.0%
!! AAAATCAATACTTTAATGTT+CGG - chr8_1:11884337-11884356 None:intergenic 15.0%
!!! ATTAAGTTAATATCTTTTAG+AGG - chr8_1:11885061-11885080 None:intergenic 15.0%
!!! TGACTTTTTTAATTTTTCTA+TGG - chr8_1:11885586-11885605 None:intergenic 15.0%
!! ATAGAAAAATTAAAAAAGTC+AGG + chr8_1:11885585-11885604 Msa1178970:intron 15.0%
!!! TGATTCTGTGTTTAATTTTT+AGG + chr8_1:11883301-11883320 Msa1178970:intron 20.0%
!! TTGTAAAAATAGCTTATAAC+AGG - chr8_1:11883490-11883509 None:intergenic 20.0%
!!! GTTGTTTTCATATACAATAA+AGG + chr8_1:11883553-11883572 Msa1178970:intron 20.0%
!!! GAATCACTATATATCATTTT+AGG - chr8_1:11883916-11883935 None:intergenic 20.0%
!! ACAAATGCTTTATGTTTATA+TGG + chr8_1:11883936-11883955 Msa1178970:intron 20.0%
!! CAAATGCTTTATGTTTATAT+GGG + chr8_1:11883937-11883956 Msa1178970:intron 20.0%
!! AAATGCTTTATGTTTATATG+GGG + chr8_1:11883938-11883957 Msa1178970:intron 20.0%
!!! TTACCAATAGTGATTTTATT+TGG + chr8_1:11883991-11884010 Msa1178970:intron 20.0%
!! TGCATATAATAACAGTTAAA+TGG + chr8_1:11884188-11884207 Msa1178970:intron 20.0%
!! TAATCTATTCAATCAAATGT+TGG - chr8_1:11884309-11884328 None:intergenic 20.0%
!!! AGCATAAAAGTTTTTCATAT+AGG + chr8_1:11884483-11884502 Msa1178970:intron 20.0%
!!! AATTATCAGATTCTAGAATA+TGG - chr8_1:11884873-11884892 None:intergenic 20.0%
!! AAAGCTAAATTTCATTGAAA+AGG - chr8_1:11885287-11885306 None:intergenic 20.0%
!! CAACAAAGAAAAATGAATAT+AGG - chr8_1:11885492-11885511 None:intergenic 20.0%
!! ATGAAATCAAAGCTTATATT+TGG - chr8_1:11885547-11885566 None:intergenic 20.0%
!!! TCAAACAATTTTCTGAAAAA+TGG + chr8_1:11885874-11885893 Msa1178970:intron 20.0%
!! ACTTTATTAAAACAGAACAA+AGG - chr8_1:11886023-11886042 None:intergenic 20.0%
!! ATATTTGTGTTTACTATTAC+AGG + chr8_1:11886363-11886382 Msa1178970:intron 20.0%
!! TATTTGTGTTTACTATTACA+GGG + chr8_1:11886364-11886383 Msa1178970:intron 20.0%
!!! AAATCATGAGTTTTTTGAAA+TGG - chr8_1:11886770-11886789 None:intergenic 20.0%
!! TAGAACTTTATTAACATATG+TGG - chr8_1:11886855-11886874 None:intergenic 20.0%
! CAAATTCTTGATTACATTGA+AGG + chr8_1:11883116-11883135 Msa1178970:CDS 25.0%
!! ACACACACACATATATATTT+TGG + chr8_1:11883217-11883236 Msa1178970:intron 25.0%
!!! TTCTGTGTTTAATTTTTAGG+TGG + chr8_1:11883304-11883323 Msa1178970:intron 25.0%
! TTAAGCTGTTTATCCAAAAA+GGG - chr8_1:11883430-11883449 None:intergenic 25.0%
! ATTAAGCTGTTTATCCAAAA+AGG - chr8_1:11883431-11883450 None:intergenic 25.0%
! AAGCCAAATAAAATCACTAT+TGG - chr8_1:11883997-11884016 None:intergenic 25.0%
!! AATGAAAAAGGGTGTAAAAA+AGG - chr8_1:11884100-11884119 None:intergenic 25.0%
!!! AAGTTTATTAAAGCCTTGTT+TGG + chr8_1:11884435-11884454 Msa1178970:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG - chr8_1:11884451-11884470 None:intergenic 25.0%
! TATTTATAAGCTCTTCCAAA+TGG + chr8_1:11884646-11884665 Msa1178970:intron 25.0%
! TAATTTCTTGTGATACCATT+TGG - chr8_1:11884664-11884683 None:intergenic 25.0%
! AATCCAATAACTGACATTTA+GGG - chr8_1:11884725-11884744 None:intergenic 25.0%
!! CTGACTTTTATTGTGTTTTT+TGG + chr8_1:11884907-11884926 Msa1178970:intron 25.0%
! TGTAAACAAATCTCGAATAA+AGG + chr8_1:11884959-11884978 Msa1178970:CDS 25.0%
!! TTATTGATTACACGTTGTTA+TGG + chr8_1:11885122-11885141 Msa1178970:intron 25.0%
!!! TGAAATTTAGCTTTTTGTCA+AGG + chr8_1:11885293-11885312 Msa1178970:intron 25.0%
! TCCTTTCTGTTAAGTATTTA+TGG + chr8_1:11885447-11885466 Msa1178970:intron 25.0%
! TCCATAAATACTTAACAGAA+AGG - chr8_1:11885451-11885470 None:intergenic 25.0%
! AATCAAAGCTTATATTTGGA+AGG - chr8_1:11885543-11885562 None:intergenic 25.0%
! CATTAAAAGAAATGAACTCA+GGG - chr8_1:11885803-11885822 None:intergenic 25.0%
! TCATTAAAAGAAATGAACTC+AGG - chr8_1:11885804-11885823 None:intergenic 25.0%
!! CAATAATTTTGTTCAGATGA+AGG - chr8_1:11886806-11886825 None:intergenic 25.0%
AATAGAAAAGAGGAACCAAA+TGG - chr8_1:11883014-11883033 None:intergenic 30.0%
TCTGTTGTTGAATAGAAAAG+AGG - chr8_1:11883024-11883043 None:intergenic 30.0%
TGCCATGCTAAGAAAAAAAT+CGG + chr8_1:11883083-11883102 Msa1178970:CDS 30.0%
!! TTACATTGAAGGTACTTACT+TGG + chr8_1:11883127-11883146 Msa1178970:intron 30.0%
!! TTTTAGGTGGTCCAAAATTA+AGG + chr8_1:11883317-11883336 Msa1178970:intron 30.0%
! CCATACCATTTCCTTAATTT+TGG - chr8_1:11883331-11883350 None:intergenic 30.0%
CCAAAATTAAGGAAATGGTA+TGG + chr8_1:11883328-11883347 Msa1178970:CDS 30.0%
AAAAAGGGTCTTAATTTACC+TGG - chr8_1:11883415-11883434 None:intergenic 30.0%
! AGGTAAATTAAGACCCTTTT+TGG + chr8_1:11883414-11883433 Msa1178970:intron 30.0%
ACAGGCACTTATAAAATAAG+CGG - chr8_1:11883472-11883491 None:intergenic 30.0%
ATATACAATAAAGGGAAACC+CGG + chr8_1:11883562-11883581 Msa1178970:intron 30.0%
AACAACTCATATTGTAACCT+TGG - chr8_1:11883741-11883760 None:intergenic 30.0%
GTGAGGTATGTAATGAAAAA+GGG - chr8_1:11884111-11884130 None:intergenic 30.0%
AGTGAGGTATGTAATGAAAA+AGG - chr8_1:11884112-11884131 None:intergenic 30.0%
!! TTGTTGAGAAGTTTTAACAG+TGG + chr8_1:11884142-11884161 Msa1178970:intron 30.0%
AAGCTATCTTGAAAAGCTTA+TGG + chr8_1:11884584-11884603 Msa1178970:intron 30.0%
TCACATAAGTCAATCAAAAG+CGG + chr8_1:11884699-11884718 Msa1178970:intron 30.0%
CAATCCAATAACTGACATTT+AGG - chr8_1:11884726-11884745 None:intergenic 30.0%
CTAAATGTCAGTTATTGGAT+TGG + chr8_1:11884724-11884743 Msa1178970:intron 30.0%
!! TATCAGATTCTAGAATATGG+AGG - chr8_1:11884870-11884889 None:intergenic 30.0%
TACCTCAACATAATTTCCAA+AGG - chr8_1:11885018-11885037 None:intergenic 30.0%
TTTGGAAATTATGTTGAGGT+AGG + chr8_1:11885017-11885036 Msa1178970:intron 30.0%
GGAAGGAACATCAAAATATA+AGG - chr8_1:11885526-11885545 None:intergenic 30.0%
TACATGGAGAGTTAATCTTT+CGG + chr8_1:11885648-11885667 Msa1178970:intron 30.0%
CGAAGTTAAAATTCTGGTAA+AGG - chr8_1:11885762-11885781 None:intergenic 30.0%
AAGGATCGAAGTTAAAATTC+TGG - chr8_1:11885768-11885787 None:intergenic 30.0%
!! GATTGATTTTACTCTTTTCC+AGG + chr8_1:11885899-11885918 Msa1178970:intron 30.0%
!! AAAAAAGTACCTGTGATAAG+AGG - chr8_1:11885974-11885993 None:intergenic 30.0%
TCAGTTTATAGTGGTAAAAC+TGG + chr8_1:11886051-11886070 Msa1178970:CDS 30.0%
TAATACAGATTCATCTTGCT+CGG - chr8_1:11886115-11886134 None:intergenic 30.0%
AGCAAGATGAATCTGTATTA+AGG + chr8_1:11886115-11886134 Msa1178970:CDS 30.0%
!! CTTTACGAGCTGATTTTATT+AGG - chr8_1:11886315-11886334 None:intergenic 30.0%
!!! TGGAATTTTATTTTCCCCAT+TGG - chr8_1:11886488-11886507 None:intergenic 30.0%
GGGAAAATAAAATTCCAGAT+TGG + chr8_1:11886491-11886510 Msa1178970:CDS 30.0%
CTTATGAATGTTCATTGAAG+AGG - chr8_1:11886559-11886578 None:intergenic 30.0%
TAAGACATGCAGTCAAAATA+TGG + chr8_1:11886575-11886594 Msa1178970:three_prime_UTR 30.0%
ACAAACCAACATATGAAGAT+TGG - chr8_1:11886673-11886692 None:intergenic 30.0%
AAAATGAAGATACACGAACT+TGG - chr8_1:11886712-11886731 None:intergenic 30.0%
CTTTATGTATCAAGTGCAAA+TGG + chr8_1:11886736-11886755 Msa1178970:three_prime_UTR 30.0%
!! AATGGTGTTGATGAAGTGAA+AGG - chr8_1:11882996-11883015 None:intergenic 35.0%
TTCACTTCATCAACACCATT+TGG + chr8_1:11882996-11883015 Msa1178970:CDS 35.0%
GCCATGCTAAGAAAAAAATC+GGG + chr8_1:11883084-11883103 Msa1178970:CDS 35.0%
!!! ACCCGATTTTTTTCTTAGCA+TGG - chr8_1:11883088-11883107 None:intergenic 35.0%
GTGGTCCAAAATTAAGGAAA+TGG + chr8_1:11883323-11883342 Msa1178970:CDS 35.0%
!!! TGGAAGTACCATCTTTTTCA+AGG - chr8_1:11883366-11883385 None:intergenic 35.0%
!!! GCTCATTTTAGTTCATCTAC+TGG - chr8_1:11883879-11883898 None:intergenic 35.0%
TCAAAGCAGAAGATGAAGTT+AGG + chr8_1:11884023-11884042 Msa1178970:intron 35.0%
CAAAGCAGAAGATGAAGTTA+GGG + chr8_1:11884024-11884043 Msa1178970:intron 35.0%
CAACAACAACTAATCAAGTG+AGG - chr8_1:11884128-11884147 None:intergenic 35.0%
! AACATAACTTCCTTGATTCG+TGG + chr8_1:11884250-11884269 Msa1178970:intron 35.0%
AAATTGGATGGTCTAGACTA+TGG - chr8_1:11884754-11884773 None:intergenic 35.0%
TAGACCATCCAATTTGATCT+TGG + chr8_1:11884759-11884778 Msa1178970:intron 35.0%
CTATCCAAGATCAAATTGGA+TGG - chr8_1:11884766-11884785 None:intergenic 35.0%
TCGACTATCCAAGATCAAAT+TGG - chr8_1:11884770-11884789 None:intergenic 35.0%
!!! TGTTTTTTGGCTTATGCAGA+TGG + chr8_1:11884920-11884939 Msa1178970:intron 35.0%
! AACTCTTTTATCCTTCACCA+AGG - chr8_1:11884985-11885004 None:intergenic 35.0%
! AGCCTTTGGAAATTATGTTG+AGG + chr8_1:11885013-11885032 Msa1178970:CDS 35.0%
AACAAACATGTCTAAAGACG+AGG - chr8_1:11885250-11885269 None:intergenic 35.0%
! GACTCTTATTAGCTTATGAG+AGG + chr8_1:11885607-11885626 Msa1178970:intron 35.0%
CTTATGAGAGGAAGACATTA+TGG + chr8_1:11885619-11885638 Msa1178970:intron 35.0%
AGAAATGAACTCAGGGTTAA+AGG - chr8_1:11885796-11885815 None:intergenic 35.0%
! TGATTTTACTCTTTTCCAGG+AGG + chr8_1:11885902-11885921 Msa1178970:intron 35.0%
! GATTTTACTCTTTTCCAGGA+GGG + chr8_1:11885903-11885922 Msa1178970:intron 35.0%
!!! GAGGGTTTTATTTCTAGTGT+GGG + chr8_1:11885921-11885940 Msa1178970:CDS 35.0%
TTATCTTTGTGGTGGTACAA+GGG - chr8_1:11886000-11886019 None:intergenic 35.0%
AACAAAGGTTATCTTTGTGG+TGG - chr8_1:11886008-11886027 None:intergenic 35.0%
CAGAACAAAGGTTATCTTTG+TGG - chr8_1:11886011-11886030 None:intergenic 35.0%
TTGCAGTTGTCAGTTTATAG+TGG + chr8_1:11886042-11886061 Msa1178970:intron 35.0%
GAATTCCTTACACCATAATC+AGG + chr8_1:11886145-11886164 Msa1178970:CDS 35.0%
AGGTGTATCTTGTAATTCAC+CGG - chr8_1:11886172-11886191 None:intergenic 35.0%
AATTACAAGATACACCTGGT+GGG + chr8_1:11886175-11886194 Msa1178970:CDS 35.0%
TTATTAGGACGAGTTAGACT+TGG - chr8_1:11886300-11886319 None:intergenic 35.0%
CAAATATGAGTCCAGTTTGT+GGG - chr8_1:11886459-11886478 None:intergenic 35.0%
TCAAATATGAGTCCAGTTTG+TGG - chr8_1:11886460-11886479 None:intergenic 35.0%
AACTGGACTCATATTTGAAG+TGG + chr8_1:11886462-11886481 Msa1178970:CDS 35.0%
! TCATATTTGAAGTGGCCAAT+GGG + chr8_1:11886470-11886489 Msa1178970:CDS 35.0%
CTAGCGGGAAGAAACAAAAA+CGG + chr8_1:11882906-11882925 Msa1178970:five_prime_UTR 40.0%
GAAGAAACAAAAACGGTTGG+AGG + chr8_1:11882913-11882932 Msa1178970:five_prime_UTR 40.0%
! AAGCTTTGTGAGTGAAAGTG+TGG - chr8_1:11882970-11882989 None:intergenic 40.0%
GCATGGCAAACGAAAAGAAA+TGG - chr8_1:11883071-11883090 None:intergenic 40.0%
!!! CCATCTTTTTCAAGGAGATC+AGG - chr8_1:11883358-11883377 None:intergenic 40.0%
CCTGATCTCCTTGAAAAAGA+TGG + chr8_1:11883355-11883374 Msa1178970:CDS 40.0%
!! GATGATGGTGATGATTTTCC+AGG + chr8_1:11883394-11883413 Msa1178970:CDS 40.0%
TGGAAACAGAAAACAGGGTA+AGG - chr8_1:11883654-11883673 None:intergenic 40.0%
! TTACCCTGTTTTCTGTTTCC+AGG + chr8_1:11883653-11883672 Msa1178970:intron 40.0%
AGTCCTGGAAACAGAAAACA+GGG - chr8_1:11883659-11883678 None:intergenic 40.0%
TAAAGTTGTTGCCATGTGAC+TGG - chr8_1:11883709-11883728 None:intergenic 40.0%
TCACATGGCAACAACTTTAC+CGG + chr8_1:11883710-11883729 Msa1178970:intron 40.0%
ACAGATGGAGATAGTGAGAT+TGG + chr8_1:11884061-11884080 Msa1178970:CDS 40.0%
GTCGACAATCTGATTCCTTT+AGG + chr8_1:11884785-11884804 Msa1178970:intron 40.0%
CAAATCTCGAATAAAGGCCT+TGG + chr8_1:11884965-11884984 Msa1178970:CDS 40.0%
GTTATGGCAAAGTCAATGAC+AGG + chr8_1:11885138-11885157 Msa1178970:intron 40.0%
GGCAAGTTATGCATACGTTT+GGG - chr8_1:11885224-11885243 None:intergenic 40.0%
TGGCAAGTTATGCATACGTT+TGG - chr8_1:11885225-11885244 None:intergenic 40.0%
! TAGCTTTTTGTCAAGGCTCA+TGG + chr8_1:11885300-11885319 Msa1178970:intron 40.0%
GACATTATGGCGACTATACA+TGG + chr8_1:11885632-11885651 Msa1178970:intron 40.0%
CACTAGAAATAAAACCCTCC+TGG - chr8_1:11885920-11885939 None:intergenic 40.0%
!!! GGAGGGTTTTATTTCTAGTG+TGG + chr8_1:11885920-11885939 Msa1178970:intron 40.0%
GTTATCTTTGTGGTGGTACA+AGG - chr8_1:11886001-11886020 None:intergenic 40.0%
GAATCTGTATTAAGGAGCTC+AGG + chr8_1:11886123-11886142 Msa1178970:CDS 40.0%
TAATTCACCGGTCCTGATTA+TGG - chr8_1:11886160-11886179 None:intergenic 40.0%
GGTGAATTACAAGATACACC+TGG + chr8_1:11886171-11886190 Msa1178970:CDS 40.0%
GAATTACAAGATACACCTGG+TGG + chr8_1:11886174-11886193 Msa1178970:CDS 40.0%
GATAGACTGTACCTTGTCAA+AGG - chr8_1:11886214-11886233 None:intergenic 40.0%
! GTTCGTATGTGTAAAAGCAC+TGG + chr8_1:11886426-11886445 Msa1178970:CDS 40.0%
! CTCATATTTGAAGTGGCCAA+TGG + chr8_1:11886469-11886488 Msa1178970:CDS 40.0%
! CATATTTGAAGTGGCCAATG+GGG + chr8_1:11886471-11886490 Msa1178970:CDS 40.0%
!! TCCAGATTGGAAAGAGTGTT+TGG + chr8_1:11886504-11886523 Msa1178970:CDS 40.0%
GCAGTCCAATCTTCATATGT+TGG + chr8_1:11886665-11886684 Msa1178970:three_prime_UTR 40.0%
CGGGAAGAAACAAAAACGGT+TGG + chr8_1:11882910-11882929 Msa1178970:five_prime_UTR 45.0%
GCACAAACCAAGACCATTGT+TGG - chr8_1:11882942-11882961 None:intergenic 45.0%
ACTTCCACAGCTAGTGATGA+TGG + chr8_1:11883379-11883398 Msa1178970:CDS 45.0%
ATCACCATCATCACTAGCTG+TGG - chr8_1:11883386-11883405 None:intergenic 45.0%
ACTAAAGCTCCCGCATACAT+AGG + chr8_1:11883588-11883607 Msa1178970:intron 45.0%
CTAAAGCTCCCGCATACATA+GGG + chr8_1:11883589-11883608 Msa1178970:intron 45.0%
CAGTCCTGGAAACAGAAAAC+AGG - chr8_1:11883660-11883679 None:intergenic 45.0%
TATTGTAACCTTGGCGCAAC+CGG - chr8_1:11883732-11883751 None:intergenic 45.0%
TGAAGTTAGGGATGCAGTTC+TGG + chr8_1:11884036-11884055 Msa1178970:CDS 45.0%
! GATGCAGTTCTGGTAACAGA+TGG + chr8_1:11884046-11884065 Msa1178970:CDS 45.0%
! TGGAGATAGTGAGATTGGTC+AGG + chr8_1:11884066-11884085 Msa1178970:CDS 45.0%
CGGCCCTAAATGTCAGTTAT+TGG + chr8_1:11884719-11884738 Msa1178970:intron 45.0%
TCAGACAATGCAACGCCTAA+AGG - chr8_1:11884803-11884822 None:intergenic 45.0%
TCGAATAAAGGCCTTGGTGA+AGG + chr8_1:11884971-11884990 Msa1178970:CDS 45.0%
AGAGTTGCACTTGAAGCCTT+TGG + chr8_1:11884999-11885018 Msa1178970:CDS 45.0%
!! TTCCTCAAGAAAGCGTTGAG+AGG + chr8_1:11885180-11885199 Msa1178970:CDS 45.0%
ACATGTCTAAAGACGAGGCA+TGG - chr8_1:11885245-11885264 None:intergenic 45.0%
CTCAGGGTTAAAGGAGTTGA+AGG - chr8_1:11885787-11885806 None:intergenic 45.0%
CCTTACACCATAATCAGGAC+CGG + chr8_1:11886150-11886169 Msa1178970:CDS 45.0%
GCAAGGCTTTACCTTTGACA+AGG + chr8_1:11886200-11886219 Msa1178970:CDS 45.0%
GCCAAACACTCTTTCCAATC+TGG - chr8_1:11886508-11886527 None:intergenic 45.0%
! AGAGTGTTTGGCGACAATGA+TGG + chr8_1:11886516-11886535 Msa1178970:CDS 45.0%
GAGGAGACCAACAATGGTCT+TGG + chr8_1:11882932-11882951 Msa1178970:exon 50.0%
CAAATGATGAGACCCCTTCC+CGG - chr8_1:11883616-11883635 None:intergenic 50.0%
CTGTTTCCAGGACTGTTTCC+AGG + chr8_1:11883665-11883684 Msa1178970:intron 50.0%
TCAAGTCCTGGAAACAGTCC+TGG - chr8_1:11883674-11883693 None:intergenic 50.0%
GTTGTTGCCATGTGACTGGA+AGG - chr8_1:11883705-11883724 None:intergenic 50.0%
GTGATCGAGACCACGAATCA+AGG - chr8_1:11884263-11884282 None:intergenic 50.0%
CTCCTCTCAACGCTTTCTTG+AGG - chr8_1:11885185-11885204 None:intergenic 50.0%
TCTAGTGTGGGTAGCCTTCA+AGG + chr8_1:11885933-11885952 Msa1178970:CDS 50.0%
CTAGTGTGGGTAGCCTTCAA+GGG + chr8_1:11885934-11885953 Msa1178970:CDS 50.0%
TAGTGTGGGTAGCCTTCAAG+GGG + chr8_1:11885935-11885954 Msa1178970:CDS 50.0%
CCACATGCTTTACCCCTTGA+AGG - chr8_1:11885950-11885969 None:intergenic 50.0%
CCTTCAAGGGGTAAAGCATG+TGG + chr8_1:11885947-11885966 Msa1178970:CDS 50.0%
GCATGTGGTCCTCTTATCAC+AGG + chr8_1:11885962-11885981 Msa1178970:CDS 50.0%
CCGGTCCTGATTATGGTGTA+AGG - chr8_1:11886153-11886172 None:intergenic 50.0%
TTACAGGGTTGTGCAGCTAC+TGG + chr8_1:11886379-11886398 Msa1178970:intron 50.0%
CTGGAGTTTGTCCCACAAAC+TGG + chr8_1:11886445-11886464 Msa1178970:CDS 50.0%
CGGTTGGAGGAGACCAACAA+TGG + chr8_1:11882926-11882945 Msa1178970:exon 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr8_1:11883584-11883603 None:intergenic 55.0%
TTCCCGGACCCTATGTATGC+GGG - chr8_1:11883600-11883619 None:intergenic 55.0%
CTTCCCGGACCCTATGTATG+CGG - chr8_1:11883601-11883620 None:intergenic 55.0%
GCATACATAGGGTCCGGGAA+GGG + chr8_1:11883600-11883619 Msa1178970:intron 55.0%
CATACATAGGGTCCGGGAAG+GGG + chr8_1:11883601-11883620 Msa1178970:intron 55.0%
CGGGAAGGGGTCTCATCATT+TGG + chr8_1:11883614-11883633 Msa1178970:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr8_1:11883686-11883705 None:intergenic 55.0%
CCATGTGACTGGAAGGTCAC+GGG - chr8_1:11883698-11883717 None:intergenic 55.0%
GCCATGTGACTGGAAGGTCA+CGG - chr8_1:11883699-11883718 None:intergenic 55.0%
! CAACTTTACCGGTTGCGCCA+AGG + chr8_1:11883721-11883740 Msa1178970:intron 55.0%
GATACACCTGGTGGGAAGCA+AGG + chr8_1:11886183-11886202 Msa1178970:CDS 55.0%
GTAAAGCCTTGCTTCCCACC+AGG - chr8_1:11886192-11886211 None:intergenic 55.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr8_1:11883583-11883602 None:intergenic 60.0%
GCTCCCGCATACATAGGGTC+CGG + chr8_1:11883594-11883613 Msa1178970:intron 60.0%
CTCCCGCATACATAGGGTCC+GGG + chr8_1:11883595-11883614 Msa1178970:intron 60.0%
CGCATACATAGGGTCCGGGA+AGG + chr8_1:11883599-11883618 Msa1178970:intron 60.0%
CCCGTGACCTTCCAGTCACA+TGG + chr8_1:11883695-11883714 Msa1178970:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 11882903 11886881 11882903 ID=Msa1178970;Name=Msa1178970
chr8_1 mRNA 11882903 11886881 11882903 ID=Msa1178970-mRNA-1;Parent=Msa1178970;Name=Msa1178970-mRNA-1;_AED=0.19;_eAED=0.19;_QI=42|0.85|0.87|1|1|1|8|314|312
chr8_1 exon 11882903 11883137 11882903 ID=Msa1178970-mRNA-1:exon:4211;Parent=Msa1178970-mRNA-1
chr8_1 exon 11883323 11883415 11883323 ID=Msa1178970-mRNA-1:exon:4212;Parent=Msa1178970-mRNA-1
chr8_1 exon 11884029 11884087 11884029 ID=Msa1178970-mRNA-1:exon:4213;Parent=Msa1178970-mRNA-1
chr8_1 exon 11884939 11885034 11884939 ID=Msa1178970-mRNA-1:exon:4214;Parent=Msa1178970-mRNA-1
chr8_1 exon 11885150 11885227 11885150 ID=Msa1178970-mRNA-1:exon:4215;Parent=Msa1178970-mRNA-1
chr8_1 exon 11885921 11885983 11885921 ID=Msa1178970-mRNA-1:exon:4216;Parent=Msa1178970-mRNA-1
chr8_1 exon 11886048 11886221 11886048 ID=Msa1178970-mRNA-1:exon:4217;Parent=Msa1178970-mRNA-1
chr8_1 exon 11886385 11886881 11886385 ID=Msa1178970-mRNA-1:exon:4218;Parent=Msa1178970-mRNA-1
chr8_1 five_prime_UTR 11882903 11882944 11882903 ID=Msa1178970-mRNA-1:five_prime_utr;Parent=Msa1178970-mRNA-1
chr8_1 CDS 11882945 11883137 11882945 ID=Msa1178970-mRNA-1:cds;Parent=Msa1178970-mRNA-1
chr8_1 CDS 11883323 11883415 11883323 ID=Msa1178970-mRNA-1:cds;Parent=Msa1178970-mRNA-1
chr8_1 CDS 11884029 11884087 11884029 ID=Msa1178970-mRNA-1:cds;Parent=Msa1178970-mRNA-1
chr8_1 CDS 11884939 11885034 11884939 ID=Msa1178970-mRNA-1:cds;Parent=Msa1178970-mRNA-1
chr8_1 CDS 11885150 11885227 11885150 ID=Msa1178970-mRNA-1:cds;Parent=Msa1178970-mRNA-1
chr8_1 CDS 11885921 11885983 11885921 ID=Msa1178970-mRNA-1:cds;Parent=Msa1178970-mRNA-1
chr8_1 CDS 11886048 11886221 11886048 ID=Msa1178970-mRNA-1:cds;Parent=Msa1178970-mRNA-1
chr8_1 CDS 11886385 11886567 11886385 ID=Msa1178970-mRNA-1:cds;Parent=Msa1178970-mRNA-1
chr8_1 three_prime_UTR 11886568 11886881 11886568 ID=Msa1178970-mRNA-1:three_prime_utr;Parent=Msa1178970-mRNA-1
Gene Sequence

>Msa1178970

ATGGTCTTGGTTTGTGCTTCTTCCACACTTTCACTCACAAAGCTTGTTCCTTTCACTTCATCAACACCATTTGGTTCCTCTTTTCTATTCAACAACAGAAACACTAATGTTTCTGTTGCTGTTCCATTTCTTTTCGTTTGCCATGCTAAGAAAAAAATCGGGTTTTTTGATCAAATTCTTGATTACATTGAAGGTGGTCCAAAATTAAGGAAATGGTATGGTGCACCTGATCTCCTTGAAAAAGATGGTACTTCCACAGCTAGTGATGATGGTGATGATTTTCCAGCAGAAGATGAAGTTAGGGATGCAGTTCTGGTAACAGATGGAGATAGTGAGATTGGTCAGATGGTGATATTGTCATTGATTGTAAACAAATCTCGAATAAAGGCCTTGGTGAAGGATAAAAGAGTTGCACTTGAAGCCTTTGGAAATTATGTTGAGTCAATGACAGGAGACACAAGCGACAATCGATTCCTCAAGAAAGCGTTGAGAGGAGTTCGCACAGTTATATGCCCAAACGAGGGTTTTATTTCTAGTGTGGGTAGCCTTCAAGGGGTAAAGCATGTGGTCCTCTTATCACAGTTGTCAGTTTATAGTGGTAAAACTGGCATTGAATCTATGATGAAAAACAATGCAAAGAAATTAGCCGAGCAAGATGAATCTGTATTAAGGAGCTCAGGAATTCCTTACACCATAATCAGGACCGGTGAATTACAAGATACACCTGGTGGGAAGCAAGGCTTTACCTTTGACAAGGGTTGTGCAGCTACTGGAAGTATTAGCAAAGAAGATGTCGCGTTCGTATGTGTAAAAGCACTGGAGTTTGTCCCACAAACTGGACTCATATTTGAAGTGGCCAATGGGGAAAATAAAATTCCAGATTGGAAAGAGTGTTTGGCGACAATGATGGAGAAATCAAGTCAACAACCTCTTCAATGA

Protein sequence

>Msa1178970

MVLVCASSTLSLTKLVPFTSSTPFGSSFLFNNRNTNVSVAVPFLFVCHAKKKIGFFDQILDYIEGGPKLRKWYGAPDLLEKDGTSTASDDGDDFPAEDEVRDAVLVTDGDSEIGQMVILSLIVNKSRIKALVKDKRVALEAFGNYVESMTGDTSDNRFLKKALRGVRTVICPNEGFISSVGSLQGVKHVVLLSQLSVYSGKTGIESMMKNNAKKLAEQDESVLRSSGIPYTIIRTGELQDTPGGKQGFTFDKGCAATGSISKEDVAFVCVKALEFVPQTGLIFEVANGENKIPDWKECLATMMEKSSQQPLQ*