AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157920 MtrunA17_Chr7g0252271 96.911 259 8 0 1 259 1 259 0.0 523
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157920 AT3G26710.1 79.695 197 39 1 63 258 68 264 4.52e-112 323

Find 195 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTAACTTGCTCCTTTC+TGG 0.008598 7_4:+46960949 None:intergenic
CATCTTCTTCTTCGTCTTCT+TGG 0.110561 7_4:-46957637 Msa1157920:three_prime_UTR
GGATCTCATTATGATATTTC+TGG 0.147844 7_4:+46960105 Msa1157930:CDS
AAACGAAGTTTCTTTGGTTT+TGG 0.222781 7_4:+46962277 None:intergenic
GAAACAGTTGCAGGAATTTC+AGG 0.237158 7_4:-46959616 Msa1157920:three_prime_UTR
ATGATATTTCTGGCAGAATT+AGG 0.242646 7_4:+46960115 Msa1157930:CDS
TTATCTCTGTTCCTGGTCTT+TGG 0.246420 7_4:-46962123 Msa1157920:CDS
TGCCGGATGTTGGCAATAAT+TGG 0.247297 7_4:-46961133 Msa1157920:CDS
TGGAAATCTGCTTAGCAAAT+AGG 0.273649 7_4:+46960493 None:intergenic
AAGGGCATGGTTTATGTTAA+AGG 0.273810 7_4:-46960827 Msa1157920:CDS
TTCTCATTTGCTCGACTTGT+TGG 0.274703 7_4:+46960870 None:intergenic
TATAGATGAAGGTGGAAATA+AGG 0.285189 7_4:-46961975 Msa1157920:CDS
GGTACCAACTTATTCATTCT+TGG 0.306788 7_4:+46960164 Msa1157930:CDS
TATGCAGAGGAGCTTATTAC+TGG 0.309200 7_4:-46960982 Msa1157920:intron
AACAGATGACGATGTGAAAT+TGG 0.317786 7_4:+46959924 Msa1157930:CDS
GATCGGTGTTTGCACACATC+TGG 0.323690 7_4:+46960026 Msa1157930:CDS
CTCCGAATTTCAAGTATGTT+TGG 0.327058 7_4:+46960346 None:intergenic
TTCGCATACTTTGTCCTAAC+AGG 0.331271 7_4:+46959724 Msa1157930:CDS
AGGGATAAACGAAGTTTCTT+TGG 0.332452 7_4:+46962271 None:intergenic
ATCATATCATAAATTACATT+TGG 0.332883 7_4:+46960473 None:intergenic
CTGAAGGGGAGAAAGAATTC+AGG 0.347551 7_4:-46957810 Msa1157920:three_prime_UTR
AGAGACTACTGGTTACTCTT+TGG 0.348247 7_4:-46962176 Msa1157920:CDS
GTGGAAGAAGGCGGTGGGAT+GGG 0.349403 7_4:-46957750 Msa1157920:three_prime_UTR
TGTAAGTAACAAGAGAGAAT+TGG 0.349828 7_4:+46962198 None:intergenic
GGGCCTTAGAGAAATGTTAT+AGG 0.352396 7_4:+46957472 None:intergenic
CAACATGTTCAATGGCTACT+TGG 0.358770 7_4:-46960578 Msa1157920:three_prime_UTR
GGGACCTGCACCATACAATT+TGG 0.359660 7_4:+46960140 Msa1157930:CDS
GCTAGTTATTATACTTCTCT+TGG 0.366409 7_4:-46962154 Msa1157920:CDS
CTTCCTATAACATTTCTCTA+AGG 0.371148 7_4:-46957475 Msa1157920:three_prime_UTR
CGCCAAACATACTTGAAATT+CGG 0.375232 7_4:-46960348 Msa1157920:three_prime_UTR
GCCAACATCCGGCACGGTTA+TGG 0.378017 7_4:+46961142 None:intergenic
TCTTGTAGTACATCCTGTTC+TGG 0.379842 7_4:+46960779 None:intergenic
TGCATTCCCTTGCCAAATGC+TGG 0.381560 7_4:+46960051 Msa1157930:CDS
TGGAAGAAGGCGGTGGGATG+GGG 0.385906 7_4:-46957749 Msa1157920:three_prime_UTR
ATGTTGGCAATAATTGGTTT+TGG 0.387394 7_4:-46961127 Msa1157920:CDS
CCGCCAAAGTCTCCAGCATT+TGG 0.391956 7_4:-46960063 Msa1157920:three_prime_UTR
AGAGGGAGATGGTGTGGATG+TGG 0.397897 7_4:+46962361 None:intergenic
GGAACTCAAGTTTAGTGAAA+AGG 0.402521 7_4:-46960846 Msa1157920:CDS
GGTTTACCAGTTGGATTTAA+CGG 0.402953 7_4:+46962446 None:intergenic
CTCTCTCTGCATCTCCCTCA+TGG 0.405211 7_4:+46957688 Msa1157930:CDS
TCATATACAATCTTTGAAGA+TGG 0.405797 7_4:-46959652 Msa1157920:three_prime_UTR
GTAAGTAACAAGAGAGAATT+GGG 0.407638 7_4:+46962199 None:intergenic
AACAAATAATTAAGATTCTC+AGG 0.407839 7_4:-46960299 Msa1157920:three_prime_UTR
TTAACAGCAGAAACAGTTGC+AGG 0.410008 7_4:-46959625 Msa1157920:three_prime_UTR
TTTCTTCTATGAAGGTTTGA+AGG 0.411553 7_4:-46961248 Msa1157920:intron
TTGCCAAATGCTGGAGACTT+TGG 0.416842 7_4:+46960060 Msa1157930:CDS
GCCCTCTTGCTTGGATCACC+AGG 0.425512 7_4:-46959700 Msa1157920:three_prime_UTR
TGGGATTTAATATTTGTTGT+TGG 0.429033 7_4:+46962218 None:intergenic
CTGCCATGAGTGTAGTTTGT+TGG 0.432672 7_4:+46962318 None:intergenic
GAATTCAGGGTGGATGGAAA+AGG 0.437093 7_4:-46957796 Msa1157920:three_prime_UTR
GTTGATCGGTTAAAGACCTT+GGG 0.438975 7_4:+46960200 None:intergenic
TAAAAGCTGATGATGACTTC+AGG 0.441229 7_4:+46960427 None:intergenic
TATGCGAATGCCCTCTTGCT+TGG 0.442545 7_4:-46959709 Msa1157920:three_prime_UTR
AACTTTGCAGTGGTTGATAG+AGG 0.442912 7_4:-46961905 Msa1157920:CDS
AAGGCACCAAGTCAAGTTGC+CGG 0.443037 7_4:-46961956 Msa1157920:CDS
TTGTCAGAAATCGTTGTTCA+AGG 0.452015 7_4:-46960899 Msa1157920:CDS
AAACAAACCTTCCACCTGTT+AGG 0.452175 7_4:-46959738 Msa1157920:three_prime_UTR
AATGGATATGGAGAAGATGA+TGG 0.454233 7_4:+46962424 None:intergenic
CCAAATGCTGGAGACTTTGG+CGG 0.457248 7_4:+46960063 Msa1157930:CDS
GAAGAGAACGGAGAGGGAGA+TGG 0.458645 7_4:+46962350 None:intergenic
GTGGAAAGCCAGTATTCATC+AGG 0.460050 7_4:+46959896 Msa1157930:CDS
CGATCACAACGAGCCATTCT+GGG 0.462447 7_4:-46960008 Msa1157920:three_prime_UTR
GCTCAGCATGTCCGCAAGTA+AGG 0.463109 7_4:+46959798 Msa1157930:CDS
GAACTCAAGTTTAGTGAAAA+GGG 0.464874 7_4:-46960845 Msa1157920:CDS
TTAGCAAATAGGCGTGCTAT+TGG 0.465412 7_4:+46960504 None:intergenic
AGCATCATCTTGGCAGCCAT+TGG 0.466070 7_4:+46962391 None:intergenic
TCTAGACCGTTAAATCCAAC+TGG 0.470518 7_4:-46962452 Msa1157920:five_prime_UTR
GTTAACCATCTTAAGTCCAT+TGG 0.471533 7_4:-46961105 Msa1157920:CDS
AATTCAGGGTGGATGGAAAA+GGG 0.475500 7_4:-46957795 Msa1157920:three_prime_UTR
ACCTCCAAATTGTATGGTGC+AGG 0.482330 7_4:-46960144 Msa1157920:three_prime_UTR
TTACGCCAATGGACTTAAGA+TGG 0.483906 7_4:+46961100 None:intergenic
GTTCTGCGCCTGATGAATAC+TGG 0.484039 7_4:-46959904 Msa1157920:three_prime_UTR
CAAACTTGAGGACAAGTAAA+CGG 0.484302 7_4:-46959774 Msa1157920:three_prime_UTR
GAGGGAGATGGTGTGGATGT+GGG 0.487288 7_4:+46962362 None:intergenic
TGTTGATCGGTTAAAGACCT+TGG 0.487515 7_4:+46960199 None:intergenic
AAGGAGTGATGGTTCCCAGC+AGG 0.487689 7_4:-46961229 Msa1157920:CDS
GGTGGAAGAAGGCGGTGGGA+TGG 0.488335 7_4:-46957751 Msa1157920:three_prime_UTR
CACCAGGAGGAAACCGTTCA+TGG 0.490179 7_4:-46959684 Msa1157920:three_prime_UTR
AAGATGATGGGTTTACCAGT+TGG 0.490440 7_4:+46962437 None:intergenic
AACCAATTATTGCCAACATC+CGG 0.490534 7_4:+46961131 None:intergenic
AAAATGATAGTTAAAGAAGA+TGG 0.490576 7_4:-46960926 Msa1157920:CDS
GTTGGTACCTCCAAATTGTA+TGG 0.490642 7_4:-46960150 Msa1157920:three_prime_UTR
ACCTCCCCGGCAACTTGACT+TGG 0.492320 7_4:+46961950 None:intergenic
ACCATAACCGTGCCGGATGT+TGG 0.492740 7_4:-46961143 Msa1157920:CDS
AGTAGTGCCTGGCTCAATGC+TGG 0.496319 7_4:-46959857 Msa1157920:three_prime_UTR
AGATCTGCGTTGATCGGAGG+TGG 0.496546 7_4:-46957769 Msa1157920:three_prime_UTR
AGGCACCAAGTCAAGTTGCC+GGG 0.499075 7_4:-46961955 Msa1157920:CDS
ATCATATACAACATGTTCAA+TGG 0.499085 7_4:-46960586 Msa1157920:three_prime_UTR
ACCAACTTATTCATTCTTGG+AGG 0.499770 7_4:+46960167 Msa1157930:CDS
AAATGCGCCATGGACATACT+TGG 0.503500 7_4:+46960276 None:intergenic
TCCTCCAAGAATGAATAAGT+TGG 0.514284 7_4:-46960168 Msa1157920:three_prime_UTR
GACGAAGAAGAAGATGTTGA+GGG 0.514634 7_4:+46957644 None:intergenic
TTTCTGCACTTGCATCAGCC+TGG 0.515220 7_4:-46961186 Msa1157920:CDS
GAGAAAGAATTCAGGGTGGA+TGG 0.515260 7_4:-46957802 Msa1157920:three_prime_UTR
TGGGGACAACAGCATCATCT+TGG 0.515410 7_4:+46962381 None:intergenic
AGGGAGATGGTGTGGATGTG+GGG 0.515801 7_4:+46962363 None:intergenic
GGGAAAACACTTACCTCTGA+AGG 0.518069 7_4:-46957826 Msa1157920:intron
GGATGTACTACAAGAATGAA+TGG 0.518925 7_4:-46960771 Msa1157920:three_prime_UTR
AAGTAAGGATGTTCTTGCTA+TGG 0.519506 7_4:+46959813 Msa1157930:CDS
AGACGAAGAAGAAGATGTTG+AGG 0.520129 7_4:+46957643 None:intergenic
AACCATGAACGGTTTCCTCC+TGG 0.520987 7_4:+46959682 Msa1157930:CDS
TTGTTACTTACAGAGACTAC+TGG 0.521171 7_4:-46962187 Msa1157920:CDS
CGTTGATCGGAGGTGGAAGA+AGG 0.521939 7_4:-46957762 Msa1157920:three_prime_UTR
TCGGAGGTGGAAGAAGGCGG+TGG 0.523668 7_4:-46957756 Msa1157920:three_prime_UTR
AACATATGCCTGTGTTTAGC+CGG 0.523740 7_4:+46960725 None:intergenic
GAACGGAGAGGGAGATGGTG+TGG 0.523786 7_4:+46962355 None:intergenic
AATGCCTTCACTTACGCCAA+TGG 0.524915 7_4:+46961089 None:intergenic
GAGGAAAACAAGTTGTTGAT+CGG 0.524976 7_4:+46960186 Msa1157930:CDS
CAAGTTTAGTGAAAAGGGCA+TGG 0.525721 7_4:-46960840 Msa1157920:CDS
AAATAAGCTATGTTTCGAAA+AGG 0.526930 7_4:+46960804 None:intergenic
GAAGTGGAAGAGAACGGAGA+GGG 0.529733 7_4:+46962344 None:intergenic
CGAATATCAAAACTTTCAGC+AGG 0.533525 7_4:+46960678 None:intergenic
TGGAGTGAAGTGGAAGAGAA+CGG 0.534314 7_4:+46962338 None:intergenic
ATGAAGGTTTGAAGGAGTGA+TGG 0.536342 7_4:-46961240 Msa1157920:intron
CCAGAATGGCTCGTTGTGAT+CGG 0.536344 7_4:+46960009 Msa1157930:CDS
ATCGGTGTTTGCACACATCT+GGG 0.542075 7_4:+46960027 Msa1157930:CDS
TGTAGTTTGTTGGAGTGAAG+TGG 0.546339 7_4:+46962328 None:intergenic
GATCTGTCCAGCATTGAGCC+AGG 0.548945 7_4:+46959850 Msa1157930:CDS
GCACTACTGTCACTGTTAAG+TGG 0.549316 7_4:+46959872 Msa1157930:CDS
ATGGATATGGAGAAGATGAT+GGG 0.549721 7_4:+46962425 None:intergenic
GGGGTTCTTAGAGAGGAAAG+AGG 0.552030 7_4:-46957730 Msa1157920:three_prime_UTR
ATAATGTTCTAAAGTGAACT+AGG 0.552989 7_4:+46960646 None:intergenic
CGGAGGTGGAAGAAGGCGGT+GGG 0.553191 7_4:-46957755 Msa1157920:three_prime_UTR
TGAAGGGGAGAAAGAATTCA+GGG 0.553314 7_4:-46957809 Msa1157920:three_prime_UTR
TATTTCTGGCAGAATTAGGA+AGG 0.553507 7_4:+46960119 Msa1157930:CDS
AGGAGTGATGGTTCCCAGCA+GGG 0.555627 7_4:-46961228 Msa1157920:CDS
CTCTCTCAGAATCTTGCTGA+GGG 0.558977 7_4:-46959978 Msa1157920:three_prime_UTR
ATGCTGGAGACTTTGGCGGA+TGG 0.561425 7_4:+46960067 Msa1157930:CDS
CTTAGAGAGGAAAGAGGAGG+CGG 0.561712 7_4:-46957724 Msa1157920:three_prime_UTR
GGGGTCAGATCTGCGTTGAT+CGG 0.562035 7_4:-46957775 Msa1157920:three_prime_UTR
ACAAGTCGAGCAAATGAGAA+AGG 0.564418 7_4:-46960867 Msa1157920:CDS
GAATTCTTTCTCCCCTTCAG+AGG 0.567157 7_4:+46957813 Msa1157930:CDS
TTGGCAAACAGTGTTGATGT+TGG 0.567703 7_4:+46959943 Msa1157930:CDS
TACTCGTAATAACTTTGCAG+TGG 0.569315 7_4:-46961915 Msa1157920:CDS
GCACGGTTATGGTGAGCACA+AGG 0.570393 7_4:+46961153 None:intergenic
ACTCTCTCAGAATCTTGCTG+AGG 0.573430 7_4:-46959979 Msa1157920:three_prime_UTR
GGAAAACACTTACCTCTGAA+GGG 0.576686 7_4:-46957825 Msa1157920:intron
GGAGTGATGGTTCCCAGCAG+GGG 0.585564 7_4:-46961227 Msa1157920:CDS
TTAACAGTGACAGTAGTGCC+TGG 0.588903 7_4:-46959868 Msa1157920:three_prime_UTR
GCATACTTTGTCCTAACAGG+TGG 0.589727 7_4:+46959727 Msa1157930:CDS
GCACAAGGGAAACACTGGCC+AGG 0.591843 7_4:+46961168 None:intergenic
TGTGCTCACCATAACCGTGC+CGG 0.593329 7_4:-46961150 Msa1157920:CDS
GAATTCAGCACTCTCGTGAA+GGG 0.593669 7_4:+46962252 None:intergenic
ACTGTCACTGTTAAGTGGCG+TGG 0.593737 7_4:+46959877 Msa1157930:CDS
TCCATTCTCTGCAAAACCAA+TGG 0.596591 7_4:-46962407 Msa1157920:exon
CAAACGTTCTGTCAAATCCA+AGG 0.596958 7_4:-46962092 Msa1157920:intron
AATGACGCAGCAGTCAAGCA+TGG 0.597254 7_4:+46957514 None:intergenic
TCATAATGAGATCCATGACA+TGG 0.597841 7_4:-46960096 Msa1157920:three_prime_UTR
TTCCACTAGTGAGCAGCCCA+AGG 0.599328 7_4:-46960216 Msa1157920:three_prime_UTR
GTCAGATCTGCGTTGATCGG+AGG 0.599812 7_4:-46957772 Msa1157920:three_prime_UTR
ACTCCAACAAACTACACTCA+TGG 0.600149 7_4:-46962321 Msa1157920:CDS
GTGGGATGGGGTTCTTAGAG+AGG 0.600373 7_4:-46957737 Msa1157920:three_prime_UTR
ATGATGAACACAACCATGAA+CGG 0.601838 7_4:+46959671 Msa1157930:CDS
TTGAACAACGATTTCTGACA+AGG 0.602980 7_4:+46960901 None:intergenic
TCTCAGGCCAAGTATGTCCA+TGG 0.606329 7_4:-46960283 Msa1157920:three_prime_UTR
TGAATTCAGCACTCTCGTGA+AGG 0.606564 7_4:+46962251 None:intergenic
AAAGTCTCCAGCATTTGGCA+AGG 0.607108 7_4:-46960058 Msa1157920:three_prime_UTR
ACTTTGTCCTAACAGGTGGA+AGG 0.607644 7_4:+46959731 Msa1157930:CDS
ACGCAGCAGTCAAGCATGGA+GGG 0.608771 7_4:+46957518 None:intergenic
TTGATGAGAGACCAAAGACC+AGG 0.611561 7_4:+46962112 None:intergenic
GGTGAGCACAAGGGAAACAC+TGG 0.612726 7_4:+46961163 None:intergenic
AGAGAGTCAAGAACCCAGAA+TGG 0.614301 7_4:+46959995 Msa1157930:CDS
AGCAGCCACCGGCTAAACAC+AGG 0.616208 7_4:-46960733 Msa1157920:three_prime_UTR
AAAGAATGATAGTACCTCCC+CGG 0.616255 7_4:+46961937 None:intergenic
TGAAGTGGAAGAGAACGGAG+AGG 0.617407 7_4:+46962343 None:intergenic
ACCTGCACCATACAATTTGG+AGG 0.619569 7_4:+46960143 Msa1157930:CDS
GATAATGTCGAAATGCGCCA+TGG 0.622811 7_4:+46960266 None:intergenic
CTGGACTCGAGCATCCAGAA+AGG 0.624164 7_4:-46960963 Msa1157920:CDS
GAAAACACTTACCTCTGAAG+GGG 0.626939 7_4:-46957824 Msa1157920:intron
ACATGCTGAGCACAAACTTG+AGG 0.627184 7_4:-46959786 Msa1157920:three_prime_UTR
ACCAAGTCAAGTTGCCGGGG+AGG 0.629980 7_4:-46961951 Msa1157920:CDS
ATTATTGCCAACATCCGGCA+CGG 0.632668 7_4:+46961136 None:intergenic
ATTCAGGGTGGATGGAAAAG+GGG 0.632839 7_4:-46957794 Msa1157920:three_prime_UTR
AGCAAGAACATCCTTACTTG+CGG 0.635054 7_4:-46959809 Msa1157920:three_prime_UTR
AAGTCTCCAGCATTTGGCAA+GGG 0.635128 7_4:-46960057 Msa1157920:three_prime_UTR
AGAGGAAAGAGGAGGCGGCG+TGG 0.637222 7_4:-46957719 Msa1157920:three_prime_UTR
ATTTCTGGCAGAATTAGGAA+GGG 0.638657 7_4:+46960120 Msa1157930:CDS
GAGTGATGGTTCCCAGCAGG+GGG 0.640157 7_4:-46961226 Msa1157920:CDS
CTCCTGGTGATCCAAGCAAG+AGG 0.642258 7_4:+46959698 Msa1157930:CDS
GGCACCAAGTCAAGTTGCCG+GGG 0.643673 7_4:-46961954 Msa1157920:CDS
TAAAGTGAACTAGGTGCCTG+AGG 0.645372 7_4:+46960655 None:intergenic
TGATCGGAGGTGGAAGAAGG+CGG 0.650837 7_4:-46957759 Msa1157920:three_prime_UTR
TCCTGGTGATCCAAGCAAGA+GGG 0.654973 7_4:+46959699 Msa1157930:CDS
GCGTGGTAAGACCTCCATGA+GGG 0.655193 7_4:-46957702 Msa1157920:three_prime_UTR
CATAATGAGATCCATGACAT+GGG 0.657346 7_4:-46960095 Msa1157920:three_prime_UTR
GACAAGTAAACGGATCAAAG+AGG 0.665826 7_4:-46959764 Msa1157920:three_prime_UTR
CACGGTTATGGTGAGCACAA+GGG 0.668400 7_4:+46961154 None:intergenic
CTCTTGCTTGGATCACCAGG+AGG 0.672619 7_4:-46959697 Msa1157920:three_prime_UTR
TCTCTGCATCTCCCTCATGG+AGG 0.676592 7_4:+46957691 Msa1157930:CDS
GACGCAGCAGTCAAGCATGG+AGG 0.677668 7_4:+46957517 None:intergenic
GTTCTTAGAGAGGAAAGAGG+AGG 0.689811 7_4:-46957727 Msa1157920:three_prime_UTR
ATATGCCTGTGTTTAGCCGG+TGG 0.709341 7_4:+46960728 None:intergenic
TGTACTACAAGAATGAATGG+AGG 0.720850 7_4:-46960768 Msa1157920:three_prime_UTR
GGCGTGGTAAGACCTCCATG+AGG 0.730085 7_4:-46957703 Msa1157920:three_prime_UTR
AGGGGAGAAAGAATTCAGGG+TGG 0.779436 7_4:-46957806 Msa1157920:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATTAAATCAATTAA+TGG - chr7_4:46960386-46960405 Msa1157920:three_prime_UTR 10.0%
!!! ATTTATATTTTTATCTAACT+AGG + chr7_4:46960419-46960438 None:intergenic 10.0%
!!! TTTGTTAAATATTTTATTGA+TGG + chr7_4:46961607-46961626 None:intergenic 10.0%
!!! CAACAAAAAATATTTTTTTT+AGG - chr7_4:46961702-46961721 Msa1157920:intron 10.0%
!! TAATGACATTAATAACTAAA+TGG + chr7_4:46958555-46958574 Msa1157930:intron 15.0%
!! ATCATATCATAAATTACATT+TGG + chr7_4:46959454-46959473 Msa1157930:intron 15.0%
!!! CCAAAATATTTTTGATTATT+TGG + chr7_4:46959683-46959702 Msa1157930:CDS 15.0%
!!! CCAAATAATCAAAAATATTT+TGG - chr7_4:46959680-46959699 Msa1157920:three_prime_UTR 15.0%
!!! TTTAGTTGTTACTTTTTTAT+GGG + chr7_4:46961304-46961323 None:intergenic 15.0%
!!! TTTTAGTTGTTACTTTTTTA+TGG + chr7_4:46961305-46961324 None:intergenic 15.0%
!!! TAATGATAAAATGTTTTTTG+TGG + chr7_4:46961468-46961487 None:intergenic 15.0%
!! AAAATATTTAACAAAATAGG+TGG - chr7_4:46961612-46961631 Msa1157920:intron 15.0%
!! TCAACAAAAAAAAAACAAAG+TGG + chr7_4:46957885-46957904 Msa1157930:intron 20.0%
!!! TCTTTTACAACATTAAAGAT+TGG + chr7_4:46958466-46958485 Msa1157930:intron 20.0%
!! ATATGTTAACACCAAATAAT+GGG + chr7_4:46958516-46958535 Msa1157930:intron 20.0%
!! ATTAATTAAGAGGCAAAAAT+AGG + chr7_4:46958614-46958633 Msa1157930:intron 20.0%
!! AAAATGATAGTTAAAGAAGA+TGG - chr7_4:46958998-46959017 Msa1157920:intron 20.0%
!! AAATTGTAAACAAAAAAGTC+AGG - chr7_4:46959534-46959553 Msa1157920:intron 20.0%
!! AACAAATAATTAAGATTCTC+AGG - chr7_4:46959625-46959644 Msa1157920:three_prime_UTR 20.0%
!! AAGATAGCAATTTAGTATTA+TGG - chr7_4:46960903-46960922 Msa1157920:CDS 20.0%
!!! AATAGTTTTGCTATTCATTT+AGG + chr7_4:46960990-46961009 None:intergenic 20.0%
!!! ACATAAATTACTTTTTTCCA+GGG + chr7_4:46961240-46961259 None:intergenic 20.0%
!!! TACATAAATTACTTTTTTCC+AGG + chr7_4:46961241-46961260 None:intergenic 20.0%
!! TTAGAAAACAACAGTTAATA+AGG - chr7_4:46961270-46961289 Msa1157920:intron 20.0%
!!! AATTTATGTGTTTAGGTTTT+CGG + chr7_4:46961891-46961910 None:intergenic 20.0%
!! TTGTGATAATTTATGTGTTT+AGG + chr7_4:46961898-46961917 None:intergenic 20.0%
!!! ATTTGATTCGTTTTATGTTA+GGG + chr7_4:46962006-46962025 None:intergenic 20.0%
!!! GATTTTTAGAATCGAAAAAA+GGG - chr7_4:46962364-46962383 Msa1157920:CDS 20.0%
!!! ATTTTTAGAATCGAAAAAAG+GGG - chr7_4:46962365-46962384 Msa1157920:CDS 20.0%
!!! TGGGATTTAATATTTGTTGT+TGG + chr7_4:46957709-46957728 Msa1157930:CDS 25.0%
! AATGAATGAATGAATTACCT+TGG + chr7_4:46957852-46957871 Msa1157930:intron 25.0%
!! AAGAAGACTTTTATAGATGA+AGG - chr7_4:46957938-46957957 Msa1157920:intron 25.0%
! CAATTAAAGAGAGAATGTAA+TGG + chr7_4:46958065-46958084 Msa1157930:intron 25.0%
! AATGATCAATAGAAGATGTT+TGG - chr7_4:46958103-46958122 Msa1157920:intron 25.0%
! TACTCATTGCATTTAATATG+TGG + chr7_4:46958132-46958151 Msa1157930:intron 25.0%
! TCATTAAGTTACTAGAATGA+GGG + chr7_4:46958344-46958363 Msa1157930:intron 25.0%
!! AATCGAATTTTTACGTTCTT+TGG - chr7_4:46958380-46958399 Msa1157920:intron 25.0%
!!! ACATTAAAGATTGGCTTAAT+TGG + chr7_4:46958457-46958476 Msa1157930:intron 25.0%
!! ACATAGAGACTTTTGATAAA+TGG + chr7_4:46958490-46958509 Msa1157930:intron 25.0%
! GATATGTTAACACCAAATAA+TGG + chr7_4:46958517-46958536 Msa1157930:intron 25.0%
! TGACGTAATGATTAATTAAG+AGG + chr7_4:46958624-46958643 Msa1157930:intron 25.0%
!!! TTTTTCTGTTTCTTCTATGA+AGG - chr7_4:46958668-46958687 Msa1157920:intron 25.0%
! AAATAAGCTATGTTTCGAAA+AGG + chr7_4:46959123-46959142 Msa1157930:intron 25.0%
!!! ATAATGTTCTAAAGTGAACT+AGG + chr7_4:46959281-46959300 Msa1157930:intron 25.0%
!!! CATTATGATTCTTACTTTTG+AGG - chr7_4:46959295-46959314 Msa1157920:intron 25.0%
! ATCATATACAACATGTTCAA+TGG - chr7_4:46959338-46959357 Msa1157920:intron 25.0%
!! TCATATACAATCTTTGAAGA+TGG - chr7_4:46960272-46960291 Msa1157920:three_prime_UTR 25.0%
! TTGCATATTATCTTACTTTG+GGG + chr7_4:46960523-46960542 None:intergenic 25.0%
! GTTGCATATTATCTTACTTT+GGG + chr7_4:46960524-46960543 None:intergenic 25.0%
! AGTTGCATATTATCTTACTT+TGG + chr7_4:46960525-46960544 None:intergenic 25.0%
! GATCTATTAAGTTTGAATAG+AGG - chr7_4:46960569-46960588 Msa1157920:three_prime_UTR 25.0%
! AATTATTCTATGTGTAGGTA+AGG + chr7_4:46960614-46960633 None:intergenic 25.0%
! GCAATAATTATTCTATGTGT+AGG + chr7_4:46960619-46960638 None:intergenic 25.0%
!! TATCTATCTGTTCCATTTTA+TGG + chr7_4:46960693-46960712 None:intergenic 25.0%
!!! TGACCCAAAATACTTTTTTA+GGG + chr7_4:46960768-46960787 None:intergenic 25.0%
!!! TTGACCCAAAATACTTTTTT+AGG + chr7_4:46960769-46960788 None:intergenic 25.0%
! TGGTTATTGAATTGTTTAGT+TGG + chr7_4:46960793-46960812 None:intergenic 25.0%
! TAAAAAACTGCATGTTTAGT+TGG + chr7_4:46960813-46960832 None:intergenic 25.0%
! AAAAGACATGAATATAGGAA+TGG + chr7_4:46961044-46961063 None:intergenic 25.0%
!! TCCTATATTCATGTCTTTTA+AGG - chr7_4:46961045-46961064 Msa1157920:intron 25.0%
! ACCTTAAAAGACATGAATAT+AGG + chr7_4:46961049-46961068 None:intergenic 25.0%
! TAAGTGTAAAGTAACTGATA+AGG - chr7_4:46961144-46961163 Msa1157920:CDS 25.0%
! AAGTGTAAAGTAACTGATAA+GGG - chr7_4:46961145-46961164 Msa1157920:CDS 25.0%
!! TAATTAGAAACAATTTTCCC+TGG - chr7_4:46961220-46961239 Msa1157920:CDS 25.0%
! ATTATGAACGAGGTATAATT+CGG + chr7_4:46961430-46961449 None:intergenic 25.0%
!! ATTTTAAACCATTATGAACG+AGG + chr7_4:46961440-46961459 None:intergenic 25.0%
! ATTAAACCAGAGTTTCAAAA+AGG - chr7_4:46961484-46961503 Msa1157920:intron 25.0%
!!! TGTTAATTTTTTGCGCTATT+TGG + chr7_4:46961747-46961766 None:intergenic 25.0%
!!! GATTTGATTCGTTTTATGTT+AGG + chr7_4:46962007-46962026 None:intergenic 25.0%
!!! CGATTTTTAGAATCGAAAAA+AGG - chr7_4:46962363-46962382 Msa1157920:CDS 25.0%
!!! CGTCATTTTTCTGATTTTTT+GGG - chr7_4:46962426-46962445 Msa1157920:five_prime_UTR 25.0%
!!! TCTTTGGTTTTGGATTTTGA+AGG + chr7_4:46957640-46957659 None:intergenic 30.0%
!! AAACGAAGTTTCTTTGGTTT+TGG + chr7_4:46957650-46957669 None:intergenic 30.0%
GTAAGTAACAAGAGAGAATT+GGG + chr7_4:46957728-46957747 Msa1157930:CDS 30.0%
TGTAAGTAACAAGAGAGAAT+TGG + chr7_4:46957729-46957748 Msa1157930:CDS 30.0%
GCTAGTTATTATACTTCTCT+TGG - chr7_4:46957770-46957789 Msa1157920:three_prime_UTR 30.0%
! TTGACAATTTCGTGCTTTTA+TGG - chr7_4:46957901-46957920 Msa1157920:intron 30.0%
! AAGACTTTTATAGATGAAGG+TGG - chr7_4:46957941-46957960 Msa1157920:intron 30.0%
TATAGATGAAGGTGGAAATA+AGG - chr7_4:46957949-46957968 Msa1157920:intron 30.0%
TATTGATCATTGCAAAAGCA+AGG + chr7_4:46958094-46958113 Msa1157930:intron 30.0%
TTGCTTATAATGAAGTCTAG+AGG - chr7_4:46958163-46958182 Msa1157920:intron 30.0%
TGCTTATAATGAAGTCTAGA+GGG - chr7_4:46958164-46958183 Msa1157920:intron 30.0%
GATTTCACCAATGCTTAAAA+TGG + chr7_4:46958194-46958213 Msa1157930:intron 30.0%
CAAGTTAAATGTTCTAACCA+TGG - chr7_4:46958217-46958236 Msa1157920:intron 30.0%
!!! GAATGAGGGTTTTTTGAATT+CGG + chr7_4:46958330-46958349 Msa1157930:intron 30.0%
GTCATTAAGTTACTAGAATG+AGG + chr7_4:46958345-46958364 Msa1157930:intron 30.0%
TACTAACCAAATCTTTGCAT+AGG - chr7_4:46958413-46958432 Msa1157920:intron 30.0%
TTTCTTCTATGAAGGTTTGA+AGG - chr7_4:46958676-46958695 Msa1157920:intron 30.0%
!! ATGTTGGCAATAATTGGTTT+TGG - chr7_4:46958797-46958816 Msa1157920:intron 30.0%
GAACTCAAGTTTAGTGAAAA+GGG - chr7_4:46959079-46959098 Msa1157920:intron 30.0%
!!! ATAGCTTATTTTACCAGAAC+AGG - chr7_4:46959132-46959151 Msa1157920:intron 30.0%
!! ATGATATTTCTGGCAGAATT+AGG + chr7_4:46959812-46959831 Msa1157930:CDS 30.0%
GGATCTCATTATGATATTTC+TGG + chr7_4:46959822-46959841 Msa1157930:CDS 30.0%
!!! TAATGCTGTTTTCTTTTGTG+TGG - chr7_4:46960333-46960352 Msa1157920:three_prime_UTR 30.0%
!! GATTTAATTTGATTGCATCC+AGG + chr7_4:46960380-46960399 None:intergenic 30.0%
TGCATATTATCTTACTTTGG+GGG + chr7_4:46960522-46960541 None:intergenic 30.0%
! TAAGGCTGATCTATTCTTTT+GGG + chr7_4:46960596-46960615 None:intergenic 30.0%
!!! TCCACCCTAAAAAAGTATTT+TGG - chr7_4:46960761-46960780 Msa1157920:three_prime_UTR 30.0%
!!! CCACCCTAAAAAAGTATTTT+GGG - chr7_4:46960762-46960781 Msa1157920:three_prime_UTR 30.0%
TACACTTATGTACCAATGAA+AGG + chr7_4:46961132-46961151 None:intergenic 30.0%
TGACTATATCAAAACTGGAA+GGG + chr7_4:46961367-46961386 None:intergenic 30.0%
ATGACTATATCAAAACTGGA+AGG + chr7_4:46961368-46961387 None:intergenic 30.0%
!! TTCCAGTTTTGATATAGTCA+TGG - chr7_4:46961367-46961386 Msa1157920:intron 30.0%
TTCCATGACTATATCAAAAC+TGG + chr7_4:46961372-46961391 None:intergenic 30.0%
GAATTATACCTCGTTCATAA+TGG - chr7_4:46961429-46961448 Msa1157920:intron 30.0%
AAAAGTTTCTTGTATCTGCA+CGG - chr7_4:46961535-46961554 Msa1157920:intron 30.0%
TCGTGATTCTCTACAATAAA+AGG - chr7_4:46961558-46961577 Msa1157920:intron 30.0%
!!! TTATTGATGGTTTTGATTCG+TGG + chr7_4:46961594-46961613 None:intergenic 30.0%
! TATATGTCTTTTTCCGTTGT+GGG + chr7_4:46961668-46961687 None:intergenic 30.0%
! ATATATGTCTTTTTCCGTTG+TGG + chr7_4:46961669-46961688 None:intergenic 30.0%
CGCAAAAAATTAACATGCTT+CGG - chr7_4:46961752-46961771 Msa1157920:intron 30.0%
CATAGTAAAATAACAGGCAA+GGG - chr7_4:46962078-46962097 Msa1157920:intron 30.0%
!!! GCGTCATTTTTCTGATTTTT+TGG - chr7_4:46962425-46962444 Msa1157920:five_prime_UTR 30.0%
CTTCCTATAACATTTCTCTA+AGG - chr7_4:46962449-46962468 Msa1157920:five_prime_UTR 30.0%
GGTTTACCAGTTGGATTTAA+CGG + chr7_4:46957481-46957500 None:intergenic 35.0%
ATGGATATGGAGAAGATGAT+GGG + chr7_4:46957502-46957521 None:intergenic 35.0%
AATGGATATGGAGAAGATGA+TGG + chr7_4:46957503-46957522 None:intergenic 35.0%
!!! TTGGTTTTGGATTTTGAAGG+TGG + chr7_4:46957637-46957656 None:intergenic 35.0%
AGGGATAAACGAAGTTTCTT+TGG + chr7_4:46957656-46957675 None:intergenic 35.0%
! TTGTTACTTACAGAGACTAC+TGG - chr7_4:46957737-46957756 Msa1157920:three_prime_UTR 35.0%
!! CTTTTTGTTATCTCTGTTCC+TGG - chr7_4:46957794-46957813 Msa1157920:three_prime_UTR 35.0%
TACTCGTAATAACTTTGCAG+TGG - chr7_4:46958009-46958028 Msa1157920:intron 35.0%
TGTAATGGTTACTTACGTGA+TGG + chr7_4:46958050-46958069 Msa1157930:intron 35.0%
! GTGATCACAGTTTAAAACCA+TGG + chr7_4:46958237-46958256 Msa1157930:intron 35.0%
CTTAATTGGTCATAGCAAAC+TGG + chr7_4:46958443-46958462 Msa1157930:intron 35.0%
CTCTATGTCTACCCATTATT+TGG - chr7_4:46958502-46958521 Msa1157920:intron 35.0%
! TGGTGTTAACATATCGAGTT+AGG - chr7_4:46958522-46958541 Msa1157920:intron 35.0%
TAAGAGGCAAAAATAGGAGA+GGG + chr7_4:46958608-46958627 Msa1157930:intron 35.0%
TTAAGAGGCAAAAATAGGAG+AGG + chr7_4:46958609-46958628 Msa1157930:intron 35.0%
AACCAATTATTGCCAACATC+CGG + chr7_4:46958796-46958815 Msa1157930:intron 35.0%
GTTAACCATCTTAAGTCCAT+TGG - chr7_4:46958819-46958838 Msa1157920:intron 35.0%
TGCCATGAATATTTATGCAG+AGG - chr7_4:46958929-46958948 Msa1157920:intron 35.0%
CTCCTCTGCATAAATATTCA+TGG + chr7_4:46958934-46958953 Msa1157930:intron 35.0%
TTGAACAACGATTTCTGACA+AGG + chr7_4:46959026-46959045 Msa1157930:intron 35.0%
TTGTCAGAAATCGTTGTTCA+AGG - chr7_4:46959025-46959044 Msa1157920:intron 35.0%
GGAACTCAAGTTTAGTGAAA+AGG - chr7_4:46959078-46959097 Msa1157920:intron 35.0%
! AAGGGCATGGTTTATGTTAA+AGG - chr7_4:46959097-46959116 Msa1157920:intron 35.0%
GGATGTACTACAAGAATGAA+TGG - chr7_4:46959153-46959172 Msa1157920:intron 35.0%
TGTACTACAAGAATGAATGG+AGG - chr7_4:46959156-46959175 Msa1157920:intron 35.0%
CGAATATCAAAACTTTCAGC+AGG + chr7_4:46959249-46959268 Msa1157930:intron 35.0%
!! AAAGTTTTGATATTCGCCTC+AGG - chr7_4:46959253-46959272 Msa1157920:intron 35.0%
TGGAAATCTGCTTAGCAAAT+AGG + chr7_4:46959434-46959453 Msa1157930:intron 35.0%
! TAAAAGCTGATGATGACTTC+AGG + chr7_4:46959500-46959519 Msa1157930:intron 35.0%
CGCCAAACATACTTGAAATT+CGG - chr7_4:46959576-46959595 Msa1157920:three_prime_UTR 35.0%
! CTCCGAATTTCAAGTATGTT+TGG + chr7_4:46959581-46959600 Msa1157930:CDS 35.0%
GAGGAAAACAAGTTGTTGAT+CGG + chr7_4:46959741-46959760 Msa1157930:CDS 35.0%
TCCTCCAAGAATGAATAAGT+TGG - chr7_4:46959756-46959775 Msa1157920:three_prime_UTR 35.0%
ACCAACTTATTCATTCTTGG+AGG + chr7_4:46959760-46959779 Msa1157930:CDS 35.0%
GGTACCAACTTATTCATTCT+TGG + chr7_4:46959763-46959782 Msa1157930:CDS 35.0%
!! ATTTCTGGCAGAATTAGGAA+GGG + chr7_4:46959807-46959826 Msa1157930:CDS 35.0%
!! TATTTCTGGCAGAATTAGGA+AGG + chr7_4:46959808-46959827 Msa1157930:CDS 35.0%
TCATAATGAGATCCATGACA+TGG - chr7_4:46959828-46959847 Msa1157920:three_prime_UTR 35.0%
CATAATGAGATCCATGACAT+GGG - chr7_4:46959829-46959848 Msa1157920:three_prime_UTR 35.0%
AACAGATGACGATGTGAAAT+TGG + chr7_4:46960003-46960022 Msa1157930:CDS 35.0%
AAGTAAGGATGTTCTTGCTA+TGG + chr7_4:46960114-46960133 Msa1157930:CDS 35.0%
CAAACTTGAGGACAAGTAAA+CGG - chr7_4:46960150-46960169 Msa1157920:three_prime_UTR 35.0%
ATGATGAACACAACCATGAA+CGG + chr7_4:46960256-46960275 None:intergenic 35.0%
! GTAAGGCTGATCTATTCTTT+TGG + chr7_4:46960597-46960616 None:intergenic 35.0%
ACCAGAGGTAAACCATAAAA+TGG - chr7_4:46960678-46960697 Msa1157920:three_prime_UTR 35.0%
! TCCATTTTATGGTTTACCTC+TGG + chr7_4:46960682-46960701 None:intergenic 35.0%
!!! CCCAAAATACTTTTTTAGGG+TGG + chr7_4:46960765-46960784 None:intergenic 35.0%
GACATGAATATAGGAATGGA+GGG + chr7_4:46961040-46961059 None:intergenic 35.0%
AGACATGAATATAGGAATGG+AGG + chr7_4:46961041-46961060 None:intergenic 35.0%
AATACTCTCTCACCTTTCAT+TGG - chr7_4:46961117-46961136 Msa1157920:CDS 35.0%
ATATGAACATCCCAGAAGAT+TGG - chr7_4:46961857-46961876 Msa1157920:intron 35.0%
GGATTTGATTCCAATCTTCT+GGG + chr7_4:46961870-46961889 None:intergenic 35.0%
!!! CTGTTATTTTACTATGGCAG+TGG + chr7_4:46962074-46962093 None:intergenic 35.0%
CACTGCCATAGTAAAATAAC+AGG - chr7_4:46962072-46962091 Msa1157920:intron 35.0%
!!! CCTTGCCTGTTATTTTACTA+TGG + chr7_4:46962080-46962099 None:intergenic 35.0%
CCATAGTAAAATAACAGGCA+AGG - chr7_4:46962077-46962096 Msa1157920:intron 35.0%
TCTAGACCGTTAAATCCAAC+TGG - chr7_4:46957472-46957491 Msa1157920:three_prime_UTR 40.0%
!! AAGATGATGGGTTTACCAGT+TGG + chr7_4:46957490-46957509 None:intergenic 40.0%
! GGTTTTGCAGAGAATGGATA+TGG + chr7_4:46957515-46957534 None:intergenic 40.0%
TCCATTCTCTGCAAAACCAA+TGG - chr7_4:46957517-46957536 Msa1157920:three_prime_UTR 40.0%
!! TGTAGTTTGTTGGAGTGAAG+TGG + chr7_4:46957599-46957618 None:intergenic 40.0%
ACTCCAACAAACTACACTCA+TGG - chr7_4:46957603-46957622 Msa1157920:three_prime_UTR 40.0%
!! GTTTTGGATTTTGAAGGTGG+TGG + chr7_4:46957634-46957653 None:intergenic 40.0%
! AGAGACTACTGGTTACTCTT+TGG - chr7_4:46957748-46957767 Msa1157920:three_prime_UTR 40.0%
! TTATCTCTGTTCCTGGTCTT+TGG - chr7_4:46957801-46957820 Msa1157920:three_prime_UTR 40.0%
CAAACGTTCTGTCAAATCCA+AGG - chr7_4:46957832-46957851 Msa1157920:intron 40.0%
AAAGAATGATAGTACCTCCC+CGG + chr7_4:46957990-46958009 Msa1157930:intron 40.0%
!! AACTTTGCAGTGGTTGATAG+AGG - chr7_4:46958019-46958038 Msa1157920:intron 40.0%
!!! GGGAGTACCATTTTAAGCAT+TGG - chr7_4:46958184-46958203 Msa1157920:intron 40.0%
TGTTGCAATTGTTGATACCG+TGG - chr7_4:46958262-46958281 Msa1157920:intron 40.0%
GCAAAAATAGGAGAGGGATA+AGG + chr7_4:46958602-46958621 Msa1157930:intron 40.0%
ATGAAGGTTTGAAGGAGTGA+TGG - chr7_4:46958684-46958703 Msa1157920:intron 40.0%
! TTACGCCAATGGACTTAAGA+TGG + chr7_4:46958827-46958846 Msa1157930:intron 40.0%
TATGCAGAGGAGCTTATTAC+TGG - chr7_4:46958942-46958961 Msa1157920:intron 40.0%
!! CACTTTAACTTGCTCCTTTC+TGG + chr7_4:46958978-46958997 Msa1157930:intron 40.0%
! TTCTCATTTGCTCGACTTGT+TGG + chr7_4:46959057-46959076 Msa1157930:intron 40.0%
ACAAGTCGAGCAAATGAGAA+AGG - chr7_4:46959057-46959076 Msa1157920:intron 40.0%
CAAGTTTAGTGAAAAGGGCA+TGG - chr7_4:46959084-46959103 Msa1157920:intron 40.0%
TCTTGTAGTACATCCTGTTC+TGG + chr7_4:46959148-46959167 Msa1157930:intron 40.0%
AACATATGCCTGTGTTTAGC+CGG + chr7_4:46959202-46959221 Msa1157930:intron 40.0%
CAACATGTTCAATGGCTACT+TGG - chr7_4:46959346-46959365 Msa1157920:intron 40.0%
TTAGCAAATAGGCGTGCTAT+TGG + chr7_4:46959423-46959442 Msa1157930:intron 40.0%
GTTGATCGGTTAAAGACCTT+GGG + chr7_4:46959727-46959746 Msa1157930:CDS 40.0%
TGTTGATCGGTTAAAGACCT+TGG + chr7_4:46959728-46959747 Msa1157930:CDS 40.0%
GTTGGTACCTCCAAATTGTA+TGG - chr7_4:46959774-46959793 Msa1157920:three_prime_UTR 40.0%
!! TTGGCAAACAGTGTTGATGT+TGG + chr7_4:46959984-46960003 Msa1157930:CDS 40.0%
AGCAAGAACATCCTTACTTG+CGG - chr7_4:46960115-46960134 Msa1157920:three_prime_UTR 40.0%
GACAAGTAAACGGATCAAAG+AGG - chr7_4:46960160-46960179 Msa1157920:three_prime_UTR 40.0%
AAACAAACCTTCCACCTGTT+AGG - chr7_4:46960186-46960205 Msa1157920:three_prime_UTR 40.0%
TTCGCATACTTTGTCCTAAC+AGG + chr7_4:46960203-46960222 None:intergenic 40.0%
TTAACAGCAGAAACAGTTGC+AGG - chr7_4:46960299-46960318 Msa1157920:three_prime_UTR 40.0%
GAAACAGTTGCAGGAATTTC+AGG - chr7_4:46960308-46960327 Msa1157920:three_prime_UTR 40.0%
! TTGGGTTGTGTGTTAGTATG+AGG + chr7_4:46960461-46960480 None:intergenic 40.0%
TTGTGCGTATGCTATTCGTT+GGG + chr7_4:46960479-46960498 None:intergenic 40.0%
ATTGTGCGTATGCTATTCGT+TGG + chr7_4:46960480-46960499 None:intergenic 40.0%
GATCAAATGATACAGACCAG+AGG - chr7_4:46960663-46960682 Msa1157920:three_prime_UTR 40.0%
ACCAGAGTTTCAAAAAGGTG+AGG - chr7_4:46961489-46961508 Msa1157920:intron 40.0%
CCAGAGTTTCAAAAAGGTGA+GGG - chr7_4:46961490-46961509 Msa1157920:intron 40.0%
! GTTTGAAGTAGAATCGAGGA+TGG + chr7_4:46961810-46961829 None:intergenic 40.0%
! GTGTGTTTGAAGTAGAATCG+AGG + chr7_4:46961814-46961833 None:intergenic 40.0%
CGGATTTGATTCCAATCTTC+TGG + chr7_4:46961871-46961890 None:intergenic 40.0%
GGAAAACACTTACCTCTGAA+GGG - chr7_4:46962099-46962118 Msa1157920:CDS 40.0%
! GAAAACACTTACCTCTGAAG+GGG - chr7_4:46962100-46962119 Msa1157920:CDS 40.0%
TGAAGGGGAGAAAGAATTCA+GGG - chr7_4:46962115-46962134 Msa1157920:CDS 40.0%
AATTCAGGGTGGATGGAAAA+GGG - chr7_4:46962129-46962148 Msa1157920:CDS 40.0%
GACGAAGAAGAAGATGTTGA+GGG + chr7_4:46962283-46962302 None:intergenic 40.0%
AGACGAAGAAGAAGATGTTG+AGG + chr7_4:46962284-46962303 None:intergenic 40.0%
CATCTTCTTCTTCGTCTTCT+TGG - chr7_4:46962287-46962306 Msa1157920:CDS 40.0%
GGGCCTTAGAGAAATGTTAT+AGG + chr7_4:46962455-46962474 None:intergenic 40.0%
!!! GCCATTGGTTTTGCAGAGAA+TGG + chr7_4:46957521-46957540 None:intergenic 45.0%
TGGAGTGAAGTGGAAGAGAA+CGG + chr7_4:46957589-46957608 None:intergenic 45.0%
! CTGCCATGAGTGTAGTTTGT+TGG + chr7_4:46957609-46957628 None:intergenic 45.0%
GAATTCAGCACTCTCGTGAA+GGG + chr7_4:46957675-46957694 Msa1157930:CDS 45.0%
TGAATTCAGCACTCTCGTGA+AGG + chr7_4:46957676-46957695 Msa1157930:CDS 45.0%
TTGATGAGAGACCAAAGACC+AGG + chr7_4:46957815-46957834 Msa1157930:CDS 45.0%
ACCGTGGACATAAGCATTTG+TGG - chr7_4:46958278-46958297 Msa1157920:intron 45.0%
GCCACAAATGCTTATGTCCA+CGG + chr7_4:46958282-46958301 Msa1157930:intron 45.0%
GGAGCTCCTATGCAAAGATT+TGG + chr7_4:46958422-46958441 Msa1157930:intron 45.0%
ATTATTGCCAACATCCGGCA+CGG + chr7_4:46958791-46958810 Msa1157930:intron 45.0%
TGCCGGATGTTGGCAATAAT+TGG - chr7_4:46958791-46958810 Msa1157920:intron 45.0%
AAGTCCATTGGCGTAAGTGA+AGG - chr7_4:46958831-46958850 Msa1157920:intron 45.0%
AATGCCTTCACTTACGCCAA+TGG + chr7_4:46958838-46958857 Msa1157930:intron 45.0%
CATACACAAAAAGCAGCCAC+CGG - chr7_4:46959180-46959199 Msa1157920:intron 45.0%
TAAAGTGAACTAGGTGCCTG+AGG + chr7_4:46959272-46959291 Msa1157930:intron 45.0%
AAATGCGCCATGGACATACT+TGG + chr7_4:46959651-46959670 Msa1157930:CDS 45.0%
GATAATGTCGAAATGCGCCA+TGG + chr7_4:46959661-46959680 Msa1157930:CDS 45.0%
ACCTCCAAATTGTATGGTGC+AGG - chr7_4:46959780-46959799 Msa1157920:three_prime_UTR 45.0%
ACCTGCACCATACAATTTGG+AGG + chr7_4:46959784-46959803 Msa1157930:CDS 45.0%
TTGCCAAATGCTGGAGACTT+TGG + chr7_4:46959867-46959886 Msa1157930:CDS 45.0%
AAAGTCTCCAGCATTTGGCA+AGG - chr7_4:46959866-46959885 Msa1157920:three_prime_UTR 45.0%
AAGTCTCCAGCATTTGGCAA+GGG - chr7_4:46959867-46959886 Msa1157920:three_prime_UTR 45.0%
! ATCGGTGTTTGCACACATCT+GGG + chr7_4:46959900-46959919 Msa1157930:CDS 45.0%
AGAGAGTCAAGAACCCAGAA+TGG + chr7_4:46959932-46959951 Msa1157930:CDS 45.0%
ACTCTCTCAGAATCTTGCTG+AGG - chr7_4:46959945-46959964 Msa1157920:three_prime_UTR 45.0%
CTCTCTCAGAATCTTGCTGA+GGG - chr7_4:46959946-46959965 Msa1157920:three_prime_UTR 45.0%
GTGGAAAGCCAGTATTCATC+AGG + chr7_4:46960031-46960050 Msa1157930:CDS 45.0%
GCACTACTGTCACTGTTAAG+TGG + chr7_4:46960055-46960074 Msa1157930:CDS 45.0%
TTAACAGTGACAGTAGTGCC+TGG - chr7_4:46960056-46960075 Msa1157920:three_prime_UTR 45.0%
ACATGCTGAGCACAAACTTG+AGG - chr7_4:46960138-46960157 Msa1157920:three_prime_UTR 45.0%
ACTTTGTCCTAACAGGTGGA+AGG + chr7_4:46960196-46960215 None:intergenic 45.0%
GCATACTTTGTCCTAACAGG+TGG + chr7_4:46960200-46960219 None:intergenic 45.0%
AGTGACTCAGTAGCAAAACC+TGG - chr7_4:46960359-46960378 Msa1157920:three_prime_UTR 45.0%
!!! CCCTCACCTTTTTGAAACTC+TGG + chr7_4:46961493-46961512 None:intergenic 45.0%
! AAAGGTGAGGGAGCATGATT+TGG - chr7_4:46961502-46961521 Msa1157920:intron 45.0%
! AAGGTGAGGGAGCATGATTT+GGG - chr7_4:46961503-46961522 Msa1157920:intron 45.0%
TTGCAGTTCCAAACCCACAA+CGG - chr7_4:46961652-46961671 Msa1157920:intron 45.0%
! GTCTTTTTCCGTTGTGGGTT+TGG + chr7_4:46961663-46961682 None:intergenic 45.0%
GGGAAAACACTTACCTCTGA+AGG - chr7_4:46962098-46962117 Msa1157920:CDS 45.0%
GAATTCTTTCTCCCCTTCAG+AGG + chr7_4:46962114-46962133 None:intergenic 45.0%
CTGAAGGGGAGAAAGAATTC+AGG - chr7_4:46962114-46962133 Msa1157920:CDS 45.0%
GAGAAAGAATTCAGGGTGGA+TGG - chr7_4:46962122-46962141 Msa1157920:CDS 45.0%
GAATTCAGGGTGGATGGAAA+AGG - chr7_4:46962128-46962147 Msa1157920:CDS 45.0%
ATTCAGGGTGGATGGAAAAG+GGG - chr7_4:46962130-46962149 Msa1157920:CDS 45.0%
GTTCTTAGAGAGGAAAGAGG+AGG - chr7_4:46962197-46962216 Msa1157920:CDS 45.0%
!! AATAAAATATTTAACAAAAT+AGG - chr7_4:46961609-46961628 Msa1157920:intron 5.0%
AGCATCATCTTGGCAGCCAT+TGG + chr7_4:46957536-46957555 None:intergenic 50.0%
TGGGGACAACAGCATCATCT+TGG + chr7_4:46957546-46957565 None:intergenic 50.0%
GAAGTGGAAGAGAACGGAGA+GGG + chr7_4:46957583-46957602 None:intergenic 50.0%
TGAAGTGGAAGAGAACGGAG+AGG + chr7_4:46957584-46957603 None:intergenic 50.0%
! AAGGCACCAAGTCAAGTTGC+CGG - chr7_4:46957968-46957987 Msa1157920:intron 50.0%
TTTCTGCACTTGCATCAGCC+TGG - chr7_4:46958738-46958757 Msa1157920:intron 50.0%
CACGGTTATGGTGAGCACAA+GGG + chr7_4:46958773-46958792 Msa1157930:intron 50.0%
ATATGCCTGTGTTTAGCCGG+TGG + chr7_4:46959199-46959218 Msa1157930:intron 50.0%
TCTCAGGCCAAGTATGTCCA+TGG - chr7_4:46959641-46959660 Msa1157920:three_prime_UTR 50.0%
GGGACCTGCACCATACAATT+TGG + chr7_4:46959787-46959806 Msa1157930:CDS 50.0%
!! GGATGGTTTTGCCCATGTCA+TGG + chr7_4:46959843-46959862 Msa1157930:CDS 50.0%
CCAAATGCTGGAGACTTTGG+CGG + chr7_4:46959864-46959883 Msa1157930:CDS 50.0%
TGCATTCCCTTGCCAAATGC+TGG + chr7_4:46959876-46959895 Msa1157930:CDS 50.0%
! GATCGGTGTTTGCACACATC+TGG + chr7_4:46959901-46959920 Msa1157930:CDS 50.0%
CCAGAATGGCTCGTTGTGAT+CGG + chr7_4:46959918-46959937 Msa1157930:CDS 50.0%
CGATCACAACGAGCCATTCT+GGG - chr7_4:46959916-46959935 Msa1157920:three_prime_UTR 50.0%
GTTCTGCGCCTGATGAATAC+TGG - chr7_4:46960020-46960039 Msa1157920:three_prime_UTR 50.0%
ACTGTCACTGTTAAGTGGCG+TGG + chr7_4:46960050-46960069 Msa1157930:CDS 50.0%
TATGCGAATGCCCTCTTGCT+TGG - chr7_4:46960215-46960234 Msa1157920:three_prime_UTR 50.0%
TCCTGGTGATCCAAGCAAGA+GGG + chr7_4:46960228-46960247 None:intergenic 50.0%
AACCATGAACGGTTTCCTCC+TGG + chr7_4:46960245-46960264 None:intergenic 50.0%
AGGGGAGAAAGAATTCAGGG+TGG - chr7_4:46962118-46962137 Msa1157920:CDS 50.0%
GGGGTTCTTAGAGAGGAAAG+AGG - chr7_4:46962194-46962213 Msa1157920:CDS 50.0%
CTTAGAGAGGAAAGAGGAGG+CGG - chr7_4:46962200-46962219 Msa1157920:CDS 50.0%
AATGACGCAGCAGTCAAGCA+TGG + chr7_4:46962413-46962432 None:intergenic 50.0%
AGGGAGATGGTGTGGATGTG+GGG + chr7_4:46957564-46957583 None:intergenic 55.0%
GAGGGAGATGGTGTGGATGT+GGG + chr7_4:46957565-46957584 None:intergenic 55.0%
AGAGGGAGATGGTGTGGATG+TGG + chr7_4:46957566-46957585 None:intergenic 55.0%
GAAGAGAACGGAGAGGGAGA+TGG + chr7_4:46957577-46957596 None:intergenic 55.0%
! AGGCACCAAGTCAAGTTGCC+GGG - chr7_4:46957969-46957988 Msa1157920:intron 55.0%
AAGGAGTGATGGTTCCCAGC+AGG - chr7_4:46958695-46958714 Msa1157920:intron 55.0%
AGGAGTGATGGTTCCCAGCA+GGG - chr7_4:46958696-46958715 Msa1157920:intron 55.0%
GGTGAGCACAAGGGAAACAC+TGG + chr7_4:46958764-46958783 Msa1157930:intron 55.0%
GCACGGTTATGGTGAGCACA+AGG + chr7_4:46958774-46958793 Msa1157930:intron 55.0%
TGTGCTCACCATAACCGTGC+CGG - chr7_4:46958774-46958793 Msa1157920:intron 55.0%
ACCATAACCGTGCCGGATGT+TGG - chr7_4:46958781-46958800 Msa1157920:intron 55.0%
CTGGACTCGAGCATCCAGAA+AGG - chr7_4:46958961-46958980 Msa1157920:intron 55.0%
TTCCACTAGTGAGCAGCCCA+AGG - chr7_4:46959708-46959727 Msa1157920:three_prime_UTR 55.0%
ATGCTGGAGACTTTGGCGGA+TGG + chr7_4:46959860-46959879 Msa1157930:CDS 55.0%
CCGCCAAAGTCTCCAGCATT+TGG - chr7_4:46959861-46959880 Msa1157920:three_prime_UTR 55.0%
CCGATCACAACGAGCCATTC+TGG - chr7_4:46959915-46959934 Msa1157920:three_prime_UTR 55.0%
AGTAGTGCCTGGCTCAATGC+TGG - chr7_4:46960067-46960086 Msa1157920:three_prime_UTR 55.0%
! GATCTGTCCAGCATTGAGCC+AGG + chr7_4:46960077-46960096 Msa1157930:CDS 55.0%
GCTCAGCATGTCCGCAAGTA+AGG + chr7_4:46960129-46960148 Msa1157930:CDS 55.0%
CTCCTGGTGATCCAAGCAAG+AGG + chr7_4:46960229-46960248 None:intergenic 55.0%
CTCTTGCTTGGATCACCAGG+AGG - chr7_4:46960227-46960246 Msa1157920:three_prime_UTR 55.0%
CACCAGGAGGAAACCGTTCA+TGG - chr7_4:46960240-46960259 Msa1157920:three_prime_UTR 55.0%
! GGGGTCAGATCTGCGTTGAT+CGG - chr7_4:46962149-46962168 Msa1157920:CDS 55.0%
! GTCAGATCTGCGTTGATCGG+AGG - chr7_4:46962152-46962171 Msa1157920:CDS 55.0%
! AGATCTGCGTTGATCGGAGG+TGG - chr7_4:46962155-46962174 Msa1157920:CDS 55.0%
CGTTGATCGGAGGTGGAAGA+AGG - chr7_4:46962162-46962181 Msa1157920:CDS 55.0%
TGATCGGAGGTGGAAGAAGG+CGG - chr7_4:46962165-46962184 Msa1157920:CDS 55.0%
GTGGGATGGGGTTCTTAGAG+AGG - chr7_4:46962187-46962206 Msa1157920:CDS 55.0%
GCGTGGTAAGACCTCCATGA+GGG - chr7_4:46962222-46962241 Msa1157920:CDS 55.0%
TCTCTGCATCTCCCTCATGG+AGG + chr7_4:46962236-46962255 None:intergenic 55.0%
CTCTCTCTGCATCTCCCTCA+TGG + chr7_4:46962239-46962258 None:intergenic 55.0%
ACGCAGCAGTCAAGCATGGA+GGG + chr7_4:46962409-46962428 None:intergenic 55.0%
GAACGGAGAGGGAGATGGTG+TGG + chr7_4:46957572-46957591 None:intergenic 60.0%
! GGCACCAAGTCAAGTTGCCG+GGG - chr7_4:46957970-46957989 Msa1157920:intron 60.0%
! ACCAAGTCAAGTTGCCGGGG+AGG - chr7_4:46957973-46957992 Msa1157920:intron 60.0%
ACCTCCCCGGCAACTTGACT+TGG + chr7_4:46957977-46957996 Msa1157930:intron 60.0%
GGAGTGATGGTTCCCAGCAG+GGG - chr7_4:46958697-46958716 Msa1157920:intron 60.0%
GAGTGATGGTTCCCAGCAGG+GGG - chr7_4:46958698-46958717 Msa1157920:intron 60.0%
GCACAAGGGAAACACTGGCC+AGG + chr7_4:46958759-46958778 Msa1157930:intron 60.0%
GCCAACATCCGGCACGGTTA+TGG + chr7_4:46958785-46958804 Msa1157930:intron 60.0%
! AGCAGCCACCGGCTAAACAC+AGG - chr7_4:46959191-46959210 Msa1157920:intron 60.0%
GACCTTGGGCTGCTCACTAG+TGG + chr7_4:46959713-46959732 Msa1157930:CDS 60.0%
GCCCTCTTGCTTGGATCACC+AGG - chr7_4:46960224-46960243 Msa1157920:three_prime_UTR 60.0%
GTGGAAGAAGGCGGTGGGAT+GGG - chr7_4:46962174-46962193 Msa1157920:CDS 60.0%
TGGAAGAAGGCGGTGGGATG+GGG - chr7_4:46962175-46962194 Msa1157920:CDS 60.0%
GGCGTGGTAAGACCTCCATG+AGG - chr7_4:46962221-46962240 Msa1157920:CDS 60.0%
GACGCAGCAGTCAAGCATGG+AGG + chr7_4:46962410-46962429 None:intergenic 60.0%
!! AGTGCTGCTTGCCCCCTGCT+GGG + chr7_4:46958712-46958731 Msa1157930:intron 65.0%
TCGGAGGTGGAAGAAGGCGG+TGG - chr7_4:46962168-46962187 Msa1157920:CDS 65.0%
CGGAGGTGGAAGAAGGCGGT+GGG - chr7_4:46962169-46962188 Msa1157920:CDS 65.0%
GGTGGAAGAAGGCGGTGGGA+TGG - chr7_4:46962173-46962192 Msa1157920:CDS 65.0%
AGAGGAAAGAGGAGGCGGCG+TGG - chr7_4:46962205-46962224 Msa1157920:CDS 65.0%
!! CAGTGCTGCTTGCCCCCTGC+TGG + chr7_4:46958713-46958732 Msa1157930:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46957457 46962489 46957457 ID=Msa1157920;Name=Msa1157920
chr7_4 mRNA 46957457 46962489 46957457 ID=Msa1157920-mRNA-1;Parent=Msa1157920;Name=Msa1157920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=79|1|1|1|0.75|0.6|5|1620|259
chr7_4 exon 46957457 46957834 46957457 ID=Msa1157920-mRNA-1:exon:12447;Parent=Msa1157920-mRNA-1
chr7_4 exon 46959569 46960997 46959569 ID=Msa1157920-mRNA-1:exon:12446;Parent=Msa1157920-mRNA-1
chr7_4 exon 46961104 46961256 46961104 ID=Msa1157920-mRNA-1:exon:12445;Parent=Msa1157920-mRNA-1
chr7_4 exon 46961893 46962014 46961893 ID=Msa1157920-mRNA-1:exon:12444;Parent=Msa1157920-mRNA-1
chr7_4 exon 46962093 46962489 46962093 ID=Msa1157920-mRNA-1:exon:12443;Parent=Msa1157920-mRNA-1
chr7_4 five_prime_UTR 46962411 46962489 46962411 ID=Msa1157920-mRNA-1:five_prime_utr;Parent=Msa1157920-mRNA-1
chr7_4 CDS 46962093 46962410 46962093 ID=Msa1157920-mRNA-1:cds;Parent=Msa1157920-mRNA-1
chr7_4 CDS 46961893 46962014 46961893 ID=Msa1157920-mRNA-1:cds;Parent=Msa1157920-mRNA-1
chr7_4 CDS 46961104 46961256 46961104 ID=Msa1157920-mRNA-1:cds;Parent=Msa1157920-mRNA-1
chr7_4 CDS 46960811 46960997 46960811 ID=Msa1157920-mRNA-1:cds;Parent=Msa1157920-mRNA-1
chr7_4 three_prime_UTR 46959569 46960810 46959569 ID=Msa1157920-mRNA-1:three_prime_utr;Parent=Msa1157920-mRNA-1
chr7_4 three_prime_UTR 46957457 46957834 46957457 ID=Msa1157920-mRNA-1:three_prime_utr;Parent=Msa1157920-mRNA-1
Gene Sequence

>Msa1157920

ATGGCTGCCAAGATGATGCTGTTGTCCCCACATCCACACCATCTCCCTCTCCGTTCTCTTCCACTTCACTCCAACAAACTACACTCATGGCAGCACCACCACCTTCAAAATCCAAAACCAAAGAAACTTCGTTTATCCCTTCACGAGAGTGCTGAATTCATCACACAAAACCAACAACAAATATTAAATCCCAATTCTCTCTTGTTACTTACAGAGACTACTGGTTACTCTTTGGCTAGTTATTATACTTCTCTTGGTCTTTTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGATTGTGAAGAAGACTTTTATAGATGAAGGTGGAAATAAGGCACCAAGTCAAGTTGCCGGGGAGGTACTATCATTCTTTACTCGTAATAACTTTGCAGTGGTTGATAGAGGAGAAACCATCACGTTTGAAGGAGTGATGGTTCCCAGCAGGGGGCAAGCAGCACTGTTAACTTTCTGCACTTGCATCAGCCTGGCCAGTGTTTCCCTTGTGCTCACCATAACCGTGCCGGATGTTGGCAATAATTGGTTTTGGTTAACCATCTTAAGTCCATTGGCAGGAGCTTATTACTGGACTCGAGCATCCAGAAAGGAGCAAGTTAAAGTGAAAATGATAGTTAAAGAAGATGGAACCTTGTCAGAAATCGTTGTTCAAGGTGACGACCAACAAGTCGAGCAAATGAGAAAGGAACTCAAGTTTAGTGAAAAGGGCATGGTTTATGTTAAAGGCCTTTTCGAAACATAG

Protein sequence

>Msa1157920

MAAKMMLLSPHPHHLPLRSLPLHSNKLHSWQHHHLQNPKPKKLRLSLHESAEFITQNQQQILNPNSLLLLTETTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIDEGGNKAPSQVAGEVLSFFTRNNFAVVDRGETITFEGVMVPSRGQAALLTFCTCISLASVSLVLTITVPDVGNNWFWLTILSPLAGAYYWTRASRKEQVKVKMIVKEDGTLSEIVVQGDDQQVEQMRKELKFSEKGMVYVKGLFET*