AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352820 MtrunA17_Chr7g0236861 95.000 320 14 1 7 324 56 375 0.0 582
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352820 AT4G13150.1 62.025 316 109 2 7 322 39 343 9.20e-136 389
Msa1352820 AT4G13150.3 56.809 257 100 2 7 263 39 284 5.48e-97 288
Msa1352820 AT4G13150.2 57.661 248 94 2 7 254 39 275 2.42e-95 284
Msa1352820 AT4G13150.5 55.459 229 91 2 7 235 39 256 1.07e-82 251
Msa1352820 AT4G13150.4 55.459 229 91 2 7 235 39 256 1.07e-82 251

Find 82 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGAGGCTTTAAATATT+TGG 0.131301 tig0012839:+112792 Msa1352820:CDS
CAACCGTTCTATGGGTTTAT+TGG 0.170728 tig0012839:+113008 Msa1352820:CDS
CAAAAGTATGGCAATCTTAT+TGG 0.194129 tig0012839:+113735 Msa1352820:CDS
TCATTACCTATAACAGAAAT+TGG 0.225358 tig0012839:-114590 None:intergenic
GAAAAGCTTCCCCAAGTAAA+AGG 0.226285 tig0012839:-113140 None:intergenic
GATCTACTTCTGGTTGCTTA+TGG 0.241388 tig0012839:+112745 Msa1352820:CDS
TATGGCAATCTTATTGGTTT+TGG 0.243971 tig0012839:+113741 Msa1352820:CDS
CGACAACCAATTTCTGTTAT+AGG 0.251129 tig0012839:+114584 Msa1352820:three_prime_UTR
GATCGAAAATGGTCAATAAA+TGG 0.253099 tig0012839:-114551 None:intergenic
ACATCATATCAACCGTTCTA+TGG 0.263168 tig0012839:+112999 Msa1352820:CDS
TCTGTTCACACTTTCCATTC+AGG 0.270300 tig0012839:+114103 Msa1352820:CDS
CAAGACAGAGATTCCGTTCC+TGG 0.294613 tig0012839:+111997 Msa1352820:CDS
CCTGCAGATGGATCTACTTC+TGG 0.300381 tig0012839:+112735 Msa1352820:intron
ATTCGCCAACAGCCTATTCT+AGG 0.301647 tig0012839:+112070 Msa1352820:CDS
TGAAGAGGCTTTAAATATTT+GGG 0.312257 tig0012839:+112793 Msa1352820:CDS
GTGACTGATAAGATCGAAAA+TGG 0.334056 tig0012839:-114562 None:intergenic
CTTATTAACAATTCCCTTTG+TGG 0.336337 tig0012839:+114689 Msa1352820:three_prime_UTR
TGAACCCTAGCTCGTATATA+TGG 0.359915 tig0012839:-114634 None:intergenic
TCACATTATTATTACCATTA+CGG 0.360639 tig0012839:-114307 None:intergenic
TTCTGGTTGCTTATGGCTGC+AGG 0.373324 tig0012839:+112752 Msa1352820:CDS
TTACGAGGCGTTAAAATCTA+AGG 0.373703 tig0012839:+111916 Msa1352820:CDS
GCAGTTGCTCCTGTTGCTGC+TGG 0.381855 tig0012839:+112139 Msa1352820:CDS
GTTGAAGCAGCCACAGCATA+TGG 0.393534 tig0012839:-114415 None:intergenic
ACAGACGTTGTACAAAAGTA+TGG 0.398457 tig0012839:+113723 Msa1352820:CDS
CTTCTGCTGATGTTACTTCA+AGG 0.413521 tig0012839:+113176 Msa1352820:CDS
GCAGTTGAACGATTCTCTCT+TGG 0.419870 tig0012839:+113889 Msa1352820:intron
ATATGTGATCAGCTGGGAAT+AGG 0.428888 tig0012839:+114237 Msa1352820:intron
TTGCTTATGGCTGCAGGTTG+CGG 0.455444 tig0012839:+112758 Msa1352820:CDS
ATACTCTTACATGGCATTCA+AGG 0.460024 tig0012839:-114479 None:intergenic
AAAGTGAAACCAGCAGCAAC+AGG 0.472516 tig0012839:-112148 None:intergenic
ATATCGGCCGTTCCCTCAAA+AGG 0.477162 tig0012839:-114263 None:intergenic
TCAAGTGCAGGGTATTTCTC+CGG 0.480432 tig0012839:+114049 Msa1352820:intron
GTGCTTCAAATTCACCTGAA+TGG 0.488478 tig0012839:-114117 None:intergenic
AGAATTGAGGTGCAAACAAA+TGG 0.492047 tig0012839:+111959 Msa1352820:CDS
CATCATATCAACCGTTCTAT+GGG 0.493913 tig0012839:+113000 Msa1352820:CDS
ATTAGCCATATATACGAGCT+AGG 0.497151 tig0012839:+114629 Msa1352820:three_prime_UTR
ATAATTCCGCAATGTGCACC+AGG 0.498074 tig0012839:+112193 Msa1352820:CDS
CTTATCTGCATATACAACTT+AGG 0.502539 tig0012839:-114516 None:intergenic
GCTATGATTGCAATTGCGTT+AGG 0.503270 tig0012839:+112019 Msa1352820:CDS
TGCTACTGTCGCAACCGTAA+TGG 0.508904 tig0012839:+114293 Msa1352820:CDS
ATACATTCAAGTACCACAAA+GGG 0.512103 tig0012839:-114702 None:intergenic
TTCTGTCTCTCGACGGAACA+TGG 0.512776 tig0012839:+112939 Msa1352820:CDS
AAAAGCTTCCCCAAGTAAAA+GGG 0.514440 tig0012839:-113139 None:intergenic
CCGGACGGTGATCCTAGAAT+AGG 0.524305 tig0012839:-112082 None:intergenic
ACAGTAGCAAGAGCAAATAT+CGG 0.537808 tig0012839:-114279 None:intergenic
AACAGGAGCAACTGCTGAAG+AGG 0.538482 tig0012839:-112131 None:intergenic
CATTTGCTGAATCTTTCTCA+AGG 0.539846 tig0012839:+112966 Msa1352820:CDS
ATGCTCTAAACATGAGGGTG+AGG 0.546750 tig0012839:+111889 Msa1352820:CDS
ACGCAATTGCAATCATAGCC+AGG 0.561603 tig0012839:-112015 None:intergenic
ATTCTGCTTCTGTAATGCAA+AGG 0.563407 tig0012839:-111863 None:intergenic
TAGAATAGGCTGTTGGCGAA+TGG 0.565403 tig0012839:-112068 None:intergenic
GCTCCTGCAAGAAAAGCTGT+AGG 0.567137 tig0012839:-113922 None:intergenic
ATATTCTGAATACTCTTACA+TGG 0.569842 tig0012839:-114488 None:intergenic
TTCTGCTGATGTTACTTCAA+GGG 0.570877 tig0012839:+113177 Msa1352820:CDS
GTGCAAACAAATGGTAAAGA+GGG 0.571852 tig0012839:+111968 Msa1352820:CDS
TGGTGTCAACAGTTAGGCAT+TGG 0.575572 tig0012839:+113678 Msa1352820:intron
AGCTTGTTTAATATTTCTCG+AGG 0.575968 tig0012839:+114738 Msa1352820:three_prime_UTR
GGTGCAAACAAATGGTAAAG+AGG 0.578480 tig0012839:+111967 Msa1352820:CDS
CTCCTGCAAGAAAAGCTGTA+GGG 0.587434 tig0012839:-113921 None:intergenic
TTCTGACAGAATCTGTAGAC+CGG 0.587906 tig0012839:-112101 None:intergenic
AATTAAATGCTCTAAACATG+AGG 0.593823 tig0012839:+111883 Msa1352820:CDS
AGAACGGTTGATATGATGTA+CGG 0.594967 tig0012839:-112995 None:intergenic
AGAAGAAATCATCATAAACA+AGG 0.595450 tig0012839:-114799 None:intergenic
GTTAGGCATTGGTAAAGAGA+AGG 0.598947 tig0012839:+113689 Msa1352820:intron
AATACATTCAAGTACCACAA+AGG 0.598968 tig0012839:-114703 None:intergenic
ATTAAATGCTCTAAACATGA+GGG 0.602499 tig0012839:+111884 Msa1352820:CDS
TTAGCCATATATACGAGCTA+GGG 0.605205 tig0012839:+114630 Msa1352820:three_prime_UTR
GTGATCCTAGAATAGGCTGT+TGG 0.615355 tig0012839:-112075 None:intergenic
GGATGCTATTGTAGCTAATG+CGG 0.622898 tig0012839:-112047 None:intergenic
CCTATTCTAGGATCACCGTC+CGG 0.623663 tig0012839:+112082 Msa1352820:CDS
GGTCTACAGATTCTGTCAGA+AGG 0.630477 tig0012839:+112103 Msa1352820:CDS
GACAGAATCTGTAGACCGGA+CGG 0.632980 tig0012839:-112097 None:intergenic
AGATGCACAAGATAGAATTG+AGG 0.647766 tig0012839:+111946 Msa1352820:CDS
TAGGTAATGATCAACTACAA+TGG 0.650847 tig0012839:+114603 Msa1352820:three_prime_UTR
ATTGCAATCATAGCCAGGAA+CGG 0.651625 tig0012839:-112010 None:intergenic
GCAAGGCTTCTGTCTCTCGA+CGG 0.653198 tig0012839:+112932 Msa1352820:CDS
GAAGAAATCATCATAAACAA+GGG 0.653367 tig0012839:-114798 None:intergenic
AGGTTGGTACGTCAATAGCA+AGG 0.665184 tig0012839:+112915 Msa1352820:intron
GGGTACCCTGGTGCACATTG+CGG 0.665443 tig0012839:-112199 None:intergenic
TTACCAATAAACCCATAGAA+CGG 0.665450 tig0012839:-113011 None:intergenic
TAATTCCGCAATGTGCACCA+GGG 0.731402 tig0012839:+112194 Msa1352820:CDS
TGAGGGTGAGGAAAATTACG+AGG 0.746935 tig0012839:+111901 Msa1352820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATCTTAAAAACAA+AGG - tig0012839:112895-112914 None:intergenic 10.0%
!!! TTGTTTTTAAGATATTTAAT+AGG + tig0012839:112895-112914 Msa1352820:intron 10.0%
!!! ATTTTATTCACAAATATTTT+TGG + tig0012839:113655-113674 Msa1352820:intron 10.0%
!! TAACTTTATCAAATATAAAA+GGG - tig0012839:113971-113990 None:intergenic 10.0%
!!! TTTTAAGATATTTAATAGGT+TGG + tig0012839:112899-112918 Msa1352820:intron 15.0%
!! CTAACTTTATCAAATATAAA+AGG - tig0012839:113972-113991 None:intergenic 15.0%
!!! CTTTTATATTTGATAAAGTT+AGG + tig0012839:113970-113989 Msa1352820:intron 15.0%
!!! TTACCTTTTTTATTTTATAC+AGG + tig0012839:114375-114394 Msa1352820:intron 15.0%
!!! TACCTTTTTTATTTTATACA+GGG + tig0012839:114376-114395 Msa1352820:intron 15.0%
!!! AGTTACATCAATTTTATTAG+TGG + tig0012839:112294-112313 Msa1352820:intron 20.0%
!! CTTATATAGAATAGAAAAAG+AGG + tig0012839:112500-112519 Msa1352820:intron 20.0%
!!! TTTAGTTCAGATTTATACAT+TGG + tig0012839:113238-113257 Msa1352820:intron 20.0%
!! TTTATCTAATGACATAAACA+AGG + tig0012839:113281-113300 Msa1352820:intron 20.0%
!! TTATCTAATGACATAAACAA+GGG + tig0012839:113282-113301 Msa1352820:intron 20.0%
!!! GTCATATTATTTTCATAACT+AGG - tig0012839:113492-113511 None:intergenic 20.0%
!!! TTATTCACAAATATTTTTGG+TGG + tig0012839:113658-113677 Msa1352820:intron 20.0%
!! ATACTTATACATAAAGACAT+GGG - tig0012839:113804-113823 None:intergenic 20.0%
!! TATACTTATACATAAAGACA+TGG - tig0012839:113805-113824 None:intergenic 20.0%
!! TTATATTTGATAAAGTTAGG+TGG + tig0012839:113973-113992 Msa1352820:intron 20.0%
!! TAAAAGAAATCACATTAAGA+AGG + tig0012839:114006-114025 Msa1352820:intron 20.0%
!! ACTTGAAGAAAAACAATTAA+AGG - tig0012839:114035-114054 None:intergenic 20.0%
!! TCACATTATTATTACCATTA+CGG - tig0012839:114310-114329 None:intergenic 20.0%
!! TTCCCTGTATAAAATAAAAA+AGG - tig0012839:114381-114400 None:intergenic 20.0%
!!! TTTATTTTATACAGGGAATT+TGG + tig0012839:114383-114402 Msa1352820:intron 20.0%
!! AATTAAATGCTCTAAACATG+AGG + tig0012839:111883-111902 Msa1352820:CDS 25.0%
!! ATTAAATGCTCTAAACATGA+GGG + tig0012839:111884-111903 Msa1352820:CDS 25.0%
!!! TGAAGAGGCTTTAAATATTT+GGG + tig0012839:112793-112812 Msa1352820:CDS 25.0%
!! AAAAACTACTGATTGTTTCA+GGG + tig0012839:113093-113112 Msa1352820:intron 25.0%
! TATCTAATGACATAAACAAG+GGG + tig0012839:113283-113302 Msa1352820:intron 25.0%
! ATATTCTGAATACTCTTACA+TGG - tig0012839:114491-114510 None:intergenic 25.0%
! TCATTACCTATAACAGAAAT+TGG - tig0012839:114593-114612 None:intergenic 25.0%
! GAAGAAATCATCATAAACAA+GGG - tig0012839:114801-114820 None:intergenic 25.0%
! AGAAGAAATCATCATAAACA+AGG - tig0012839:114802-114821 None:intergenic 25.0%
! GGTTTCACTTTCAAAGTTTT+TGG + tig0012839:112160-112179 Msa1352820:CDS 30.0%
! TGTCATTTGTTTCAACAGTT+TGG + tig0012839:112247-112266 Msa1352820:intron 30.0%
!!! CTGTTTTGTTGTTAACTCAT+AGG + tig0012839:112568-112587 Msa1352820:intron 30.0%
! TTTTACTGTTATAGCGACAA+AGG + tig0012839:112593-112612 Msa1352820:intron 30.0%
TGTAAAAAATCAGCCTATTG+TGG + tig0012839:112621-112640 Msa1352820:intron 30.0%
!! GTGAAGAGGCTTTAAATATT+TGG + tig0012839:112792-112811 Msa1352820:CDS 30.0%
AAACAAGAAGCAAACACATA+AGG - tig0012839:112852-112871 None:intergenic 30.0%
!!! AAAGGTGTTTTCAATTCAAC+GGG - tig0012839:112877-112896 None:intergenic 30.0%
!!! CAAAGGTGTTTTCAATTCAA+CGG - tig0012839:112878-112897 None:intergenic 30.0%
TTACCAATAAACCCATAGAA+CGG - tig0012839:113014-113033 None:intergenic 30.0%
! CAAAAACTACTGATTGTTTC+AGG + tig0012839:113092-113111 Msa1352820:intron 30.0%
! AAAACTACTGATTGTTTCAG+GGG + tig0012839:113094-113113 Msa1352820:intron 30.0%
GTTGTACATAATACTTCCTT+CGG + tig0012839:113203-113222 Msa1352820:intron 30.0%
! AATCTGAACTAAACTGATTC+AGG - tig0012839:113231-113250 None:intergenic 30.0%
ATCTAATGACATAAACAAGG+GGG + tig0012839:113284-113303 Msa1352820:intron 30.0%
GAACTTATATAATAAGCGCT+TGG + tig0012839:113552-113571 Msa1352820:intron 30.0%
TTAAGCTGTTTATCCAAACA+CGG + tig0012839:113579-113598 Msa1352820:intron 30.0%
! CAAAAGTATGGCAATCTTAT+TGG + tig0012839:113735-113754 Msa1352820:CDS 30.0%
!!! TATGGCAATCTTATTGGTTT+TGG + tig0012839:113741-113760 Msa1352820:CDS 30.0%
AATCTATCAATCACTAACCA+AGG - tig0012839:113947-113966 None:intergenic 30.0%
TTTGATAAAGTTAGGTGGAA+AGG + tig0012839:113978-113997 Msa1352820:intron 30.0%
!! AATTGTTTTTCTTCAAGTGC+AGG + tig0012839:114037-114056 Msa1352820:intron 30.0%
!! ATTGTTTTTCTTCAAGTGCA+GGG + tig0012839:114038-114057 Msa1352820:intron 30.0%
!! CTGCTTTATTCTTTTATGTC+AGG + tig0012839:114437-114456 Msa1352820:CDS 30.0%
! CTTTATTCTTTTATGTCAGG+CGG + tig0012839:114440-114459 Msa1352820:CDS 30.0%
CTTATCTGCATATACAACTT+AGG - tig0012839:114519-114538 None:intergenic 30.0%
GATCGAAAATGGTCAATAAA+TGG - tig0012839:114554-114573 None:intergenic 30.0%
TAGGTAATGATCAACTACAA+TGG + tig0012839:114603-114622 Msa1352820:three_prime_UTR 30.0%
CTTATTAACAATTCCCTTTG+TGG + tig0012839:114689-114708 Msa1352820:three_prime_UTR 30.0%
ATACATTCAAGTACCACAAA+GGG - tig0012839:114705-114724 None:intergenic 30.0%
AATACATTCAAGTACCACAA+AGG - tig0012839:114706-114725 None:intergenic 30.0%
! AGCTTGTTTAATATTTCTCG+AGG + tig0012839:114738-114757 Msa1352820:three_prime_UTR 30.0%
ATTCTGCTTCTGTAATGCAA+AGG - tig0012839:111866-111885 None:intergenic 35.0%
! TTACGAGGCGTTAAAATCTA+AGG + tig0012839:111916-111935 Msa1352820:CDS 35.0%
AGATGCACAAGATAGAATTG+AGG + tig0012839:111946-111965 Msa1352820:CDS 35.0%
AGAATTGAGGTGCAAACAAA+TGG + tig0012839:111959-111978 Msa1352820:CDS 35.0%
GTGCAAACAAATGGTAAAGA+GGG + tig0012839:111968-111987 Msa1352820:CDS 35.0%
AAGCAATAGAAGAGGAAGAA+GGG - tig0012839:112223-112242 None:intergenic 35.0%
AAAGCAATAGAAGAGGAAGA+AGG - tig0012839:112224-112243 None:intergenic 35.0%
GACAAAGAAAGCAATAGAAG+AGG - tig0012839:112231-112250 None:intergenic 35.0%
GAGCTACTGCTTAATAGTTA+TGG + tig0012839:112319-112338 Msa1352820:intron 35.0%
ATGCATGGATGAATTACAAG+TGG - tig0012839:112422-112441 None:intergenic 35.0%
! TTGTCATGCTACTTCAACTT+TGG - tig0012839:112474-112493 None:intergenic 35.0%
! CATTTGCTGAATCTTTCTCA+AGG + tig0012839:112966-112985 Msa1352820:CDS 35.0%
! AGAACGGTTGATATGATGTA+CGG - tig0012839:112998-113017 None:intergenic 35.0%
ACATCATATCAACCGTTCTA+TGG + tig0012839:112999-113018 Msa1352820:CDS 35.0%
CATCATATCAACCGTTCTAT+GGG + tig0012839:113000-113019 Msa1352820:CDS 35.0%
! TGACATGATACCCTTTTACT+TGG + tig0012839:113129-113148 Msa1352820:CDS 35.0%
! GACATGATACCCTTTTACTT+GGG + tig0012839:113130-113149 Msa1352820:CDS 35.0%
! ACATGATACCCTTTTACTTG+GGG + tig0012839:113131-113150 Msa1352820:CDS 35.0%
AAAAGCTTCCCCAAGTAAAA+GGG - tig0012839:113142-113161 None:intergenic 35.0%
! TTCTGCTGATGTTACTTCAA+GGG + tig0012839:113177-113196 Msa1352820:CDS 35.0%
ATTGGAGATTGAATCCAACT+AGG + tig0012839:113256-113275 Msa1352820:intron 35.0%
TTGGAGATTGAATCCAACTA+GGG + tig0012839:113257-113276 Msa1352820:intron 35.0%
TCATTAGATAAACCCCTAGT+TGG - tig0012839:113273-113292 None:intergenic 35.0%
TCCATAAGCTCTCTCAAAAA+GGG - tig0012839:113464-113483 None:intergenic 35.0%
TTCCATAAGCTCTCTCAAAA+AGG - tig0012839:113465-113484 None:intergenic 35.0%
TTTAAGCATTAGACCGTGTT+TGG - tig0012839:113595-113614 None:intergenic 35.0%
ACAGACGTTGTACAAAAGTA+TGG + tig0012839:113723-113742 Msa1352820:CDS 35.0%
TTATACATAAAGACATGGGC+AGG - tig0012839:113800-113819 None:intergenic 35.0%
! ATTCAGGTGAATTTGAAGCA+CGG + tig0012839:114119-114138 Msa1352820:intron 35.0%
ACAGTAGCAAGAGCAAATAT+CGG - tig0012839:114282-114301 None:intergenic 35.0%
! GACAATTTTTCCATATGCTG+TGG + tig0012839:114405-114424 Msa1352820:CDS 35.0%
ATACTCTTACATGGCATTCA+AGG - tig0012839:114482-114501 None:intergenic 35.0%
GTGACTGATAAGATCGAAAA+TGG - tig0012839:114565-114584 None:intergenic 35.0%
CGACAACCAATTTCTGTTAT+AGG + tig0012839:114584-114603 Msa1352820:three_prime_UTR 35.0%
ATTAGCCATATATACGAGCT+AGG + tig0012839:114629-114648 Msa1352820:three_prime_UTR 35.0%
TTAGCCATATATACGAGCTA+GGG + tig0012839:114630-114649 Msa1352820:three_prime_UTR 35.0%
GGTGCAAACAAATGGTAAAG+AGG + tig0012839:111967-111986 Msa1352820:CDS 40.0%
ATTGCAATCATAGCCAGGAA+CGG - tig0012839:112013-112032 None:intergenic 40.0%
GCTATGATTGCAATTGCGTT+AGG + tig0012839:112019-112038 Msa1352820:CDS 40.0%
GGATGCTATTGTAGCTAATG+CGG - tig0012839:112050-112069 None:intergenic 40.0%
TTCTGACAGAATCTGTAGAC+CGG - tig0012839:112104-112123 None:intergenic 40.0%
AGCAATAGAAGAGGAAGAAG+GGG - tig0012839:112222-112241 None:intergenic 40.0%
TGAATTACAAGTGGCAGACA+TGG - tig0012839:112413-112432 None:intergenic 40.0%
ATCAGCCTATTGTGGCATTA+TGG + tig0012839:112629-112648 Msa1352820:intron 40.0%
TGCTACCATAATGCCACAAT+AGG - tig0012839:112637-112656 None:intergenic 40.0%
! GATCTACTTCTGGTTGCTTA+TGG + tig0012839:112745-112764 Msa1352820:CDS 40.0%
!!! CGGTTTTTTCATCAGTGAAG+AGG + tig0012839:112778-112797 Msa1352820:CDS 40.0%
CAACCGTTCTATGGGTTTAT+TGG + tig0012839:113008-113027 Msa1352820:CDS 40.0%
GAAAAGCTTCCCCAAGTAAA+AGG - tig0012839:113143-113162 None:intergenic 40.0%
! CTTCTGCTGATGTTACTTCA+AGG + tig0012839:113176-113195 Msa1352820:CDS 40.0%
! TAAACTGATTCAGGTTCCGA+AGG - tig0012839:113222-113241 None:intergenic 40.0%
TGGAGATTGAATCCAACTAG+GGG + tig0012839:113258-113277 Msa1352820:intron 40.0%
CTTTCAGTCACATGACAACA+AGG - tig0012839:113312-113331 None:intergenic 40.0%
! CTTGTTGTCATGTGACTGAA+AGG + tig0012839:113310-113329 Msa1352820:intron 40.0%
TGTCATGTGACTGAAAGGTT+TGG + tig0012839:113315-113334 Msa1352820:intron 40.0%
GTCATGTGACTGAAAGGTTT+GGG + tig0012839:113316-113335 Msa1352820:intron 40.0%
! AAAGGTTTGGGTTCAATTCC+TGG + tig0012839:113328-113347 Msa1352820:intron 40.0%
AGCCTCTTGCGTAAAAAACA+GGG + tig0012839:113355-113374 Msa1352820:intron 40.0%
CGTACTATACACCAAATGGT+TGG + tig0012839:113386-113405 Msa1352820:intron 40.0%
!!! TTTTGGTGGTGTCAACAGTT+AGG + tig0012839:113672-113691 Msa1352820:intron 40.0%
!! GTTAGGCATTGGTAAAGAGA+AGG + tig0012839:113689-113708 Msa1352820:intron 40.0%
!!! TTTTTTGCAGGGGTCTGTTT+TGG + tig0012839:114077-114096 Msa1352820:CDS 40.0%
! TTTTTGCAGGGGTCTGTTTT+GGG + tig0012839:114078-114097 Msa1352820:CDS 40.0%
TCTGTTCACACTTTCCATTC+AGG + tig0012839:114103-114122 Msa1352820:CDS 40.0%
GTGCTTCAAATTCACCTGAA+TGG - tig0012839:114120-114139 None:intergenic 40.0%
TCCTTACATATGTGATCAGC+TGG + tig0012839:114230-114249 Msa1352820:intron 40.0%
CCTTACATATGTGATCAGCT+GGG + tig0012839:114231-114250 Msa1352820:intron 40.0%
ATATGTGATCAGCTGGGAAT+AGG + tig0012839:114237-114256 Msa1352820:intron 40.0%
! TGGGAATAGGATTCCTTTTG+AGG + tig0012839:114250-114269 Msa1352820:CDS 40.0%
! GGGAATAGGATTCCTTTTGA+GGG + tig0012839:114251-114270 Msa1352820:CDS 40.0%
!! TAGGATTCCTTTTGAGGGAA+CGG + tig0012839:114256-114275 Msa1352820:CDS 40.0%
TGAACCCTAGCTCGTATATA+TGG - tig0012839:114637-114656 None:intergenic 40.0%
! ATGCTCTAAACATGAGGGTG+AGG + tig0012839:111889-111908 Msa1352820:CDS 45.0%
TGAGGGTGAGGAAAATTACG+AGG + tig0012839:111901-111920 Msa1352820:CDS 45.0%
ACGCAATTGCAATCATAGCC+AGG - tig0012839:112018-112037 None:intergenic 45.0%
TAGAATAGGCTGTTGGCGAA+TGG - tig0012839:112071-112090 None:intergenic 45.0%
ATTCGCCAACAGCCTATTCT+AGG + tig0012839:112070-112089 Msa1352820:CDS 45.0%
GTGATCCTAGAATAGGCTGT+TGG - tig0012839:112078-112097 None:intergenic 45.0%
GGTCTACAGATTCTGTCAGA+AGG + tig0012839:112103-112122 Msa1352820:CDS 45.0%
AAAGTGAAACCAGCAGCAAC+AGG - tig0012839:112151-112170 None:intergenic 45.0%
ATAATTCCGCAATGTGCACC+AGG + tig0012839:112193-112212 Msa1352820:CDS 45.0%
TAATTCCGCAATGTGCACCA+GGG + tig0012839:112194-112213 Msa1352820:CDS 45.0%
! AACTGCTAGTTCTCGATGCA+TGG - tig0012839:112437-112456 None:intergenic 45.0%
GTATCTGAATTCCCTGCAGA+TGG + tig0012839:112723-112742 Msa1352820:intron 45.0%
CAGAAGTAGATCCATCTGCA+GGG - tig0012839:112737-112756 None:intergenic 45.0%
! TTTGGGTCTGTGCTTTTCAC+TGG + tig0012839:112810-112829 Msa1352820:intron 45.0%
!! AGGTTGGTACGTCAATAGCA+AGG + tig0012839:112915-112934 Msa1352820:intron 45.0%
! GGGAAGCTTTTCAGAAAGTC+TGG + tig0012839:113151-113170 Msa1352820:CDS 45.0%
CAGCCTCTTGCGTAAAAAAC+AGG + tig0012839:113354-113373 Msa1352820:intron 45.0%
!!! TGCCCTGTTTTTTACGCAAG+AGG - tig0012839:113360-113379 None:intergenic 45.0%
CTTGCGTAAAAAACAGGGCA+AGG + tig0012839:113360-113379 Msa1352820:intron 45.0%
GCTGCGTACTATACACCAAA+TGG + tig0012839:113382-113401 Msa1352820:intron 45.0%
AAGCTCTCTCAAAAAGGGCA+GGG - tig0012839:113459-113478 None:intergenic 45.0%
TAAGCTCTCTCAAAAAGGGC+AGG - tig0012839:113460-113479 None:intergenic 45.0%
!! GCCCTTTTTGAGAGAGCTTA+TGG + tig0012839:113460-113479 Msa1352820:intron 45.0%
! TGGTGTCAACAGTTAGGCAT+TGG + tig0012839:113678-113697 Msa1352820:intron 45.0%
GCAGTTGAACGATTCTCTCT+TGG + tig0012839:113889-113908 Msa1352820:intron 45.0%
! AACCCTACAGCTTTTCTTGC+AGG + tig0012839:113919-113938 Msa1352820:CDS 45.0%
CTCCTGCAAGAAAAGCTGTA+GGG - tig0012839:113924-113943 None:intergenic 45.0%
! TCAAGTGCAGGGTATTTCTC+CGG + tig0012839:114049-114068 Msa1352820:intron 45.0%
!!! TCTCCGGAGTTGTTTTTTGC+AGG + tig0012839:114065-114084 Msa1352820:CDS 45.0%
!!! CTCCGGAGTTGTTTTTTGCA+GGG + tig0012839:114066-114085 Msa1352820:CDS 45.0%
!!! TCCGGAGTTGTTTTTTGCAG+GGG + tig0012839:114067-114086 Msa1352820:CDS 45.0%
ACCCCTGCAAAAAACAACTC+CGG - tig0012839:114071-114090 None:intergenic 45.0%
! TTTTGCAGGGGTCTGTTTTG+GGG + tig0012839:114079-114098 Msa1352820:CDS 45.0%
CCCAGCTGATCACATATGTA+AGG - tig0012839:114234-114253 None:intergenic 45.0%
CAAGACAGAGATTCCGTTCC+TGG + tig0012839:111997-112016 Msa1352820:CDS 50.0%
!! CCTATTCTAGGATCACCGTC+CGG + tig0012839:112082-112101 Msa1352820:CDS 50.0%
GACAGAATCTGTAGACCGGA+CGG - tig0012839:112100-112119 None:intergenic 50.0%
AACAGGAGCAACTGCTGAAG+AGG - tig0012839:112134-112153 None:intergenic 50.0%
CCAGAAGTAGATCCATCTGC+AGG - tig0012839:112738-112757 None:intergenic 50.0%
CCTGCAGATGGATCTACTTC+TGG + tig0012839:112735-112754 Msa1352820:intron 50.0%
! TTCTGGTTGCTTATGGCTGC+AGG + tig0012839:112752-112771 Msa1352820:CDS 50.0%
TTGCTTATGGCTGCAGGTTG+CGG + tig0012839:112758-112777 Msa1352820:CDS 50.0%
TTCTGTCTCTCGACGGAACA+TGG + tig0012839:112939-112958 Msa1352820:CDS 50.0%
! TTACGCAAGAGGCTGTTTCC+AGG - tig0012839:113349-113368 None:intergenic 50.0%
GCTCCTGCAAGAAAAGCTGT+AGG - tig0012839:113925-113944 None:intergenic 50.0%
! AGCTTTTCTTGCAGGAGCCT+TGG + tig0012839:113927-113946 Msa1352820:CDS 50.0%
!! TTTGCAGGGGTCTGTTTTGG+GGG + tig0012839:114080-114099 Msa1352820:CDS 50.0%
ATATCGGCCGTTCCCTCAAA+AGG - tig0012839:114266-114285 None:intergenic 50.0%
TGCTACTGTCGCAACCGTAA+TGG + tig0012839:114293-114312 Msa1352820:CDS 50.0%
GTTGAAGCAGCCACAGCATA+TGG - tig0012839:114418-114437 None:intergenic 50.0%
CCGGACGGTGATCCTAGAAT+AGG - tig0012839:112085-112104 None:intergenic 55.0%
!! AAGAGGAAGAAGGGGTACCC+TGG - tig0012839:112214-112233 None:intergenic 55.0%
GCAAGGCTTCTGTCTCTCGA+CGG + tig0012839:112932-112951 Msa1352820:CDS 55.0%
CAAATGGTTGGACGCCTTCC+CGG + tig0012839:113398-113417 Msa1352820:intron 55.0%
ACAGAGCTACCGCATACGCA+GGG - tig0012839:113425-113444 None:intergenic 55.0%
! TATGCGGTAGCTCTGTGCAC+CGG + tig0012839:113429-113448 Msa1352820:intron 55.0%
GCAGTTGCTCCTGTTGCTGC+TGG + tig0012839:112139-112158 Msa1352820:CDS 60.0%
GGGTACCCTGGTGCACATTG+CGG - tig0012839:112202-112221 None:intergenic 60.0%
!! CGGGAAGGCGTCCAACCATT+TGG - tig0012839:113400-113419 None:intergenic 60.0%
CACAGAGCTACCGCATACGC+AGG - tig0012839:113426-113445 None:intergenic 60.0%
! ATGCGGTAGCTCTGTGCACC+GGG + tig0012839:113430-113449 Msa1352820:intron 60.0%
TCAAAAAGGGCAGGGCAGCC+CGG - tig0012839:113451-113470 None:intergenic 60.0%
CTTCCCGGACCCTGCGTATG+CGG + tig0012839:113413-113432 Msa1352820:intron 65.0%
CTACCGCATACGCAGGGTCC+GGG - tig0012839:113419-113438 None:intergenic 65.0%
GCTACCGCATACGCAGGGTC+CGG - tig0012839:113420-113439 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG - tig0012839:113415-113434 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0012839 gene 111854 114824 111854 ID=Msa1352820;Name=Msa1352820
tig0012839 mRNA 111854 114824 111854 ID=Msa1352820-mRNA-1;Parent=Msa1352820;Name=Msa1352820-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|1|0.88|1|1|1|9|347|324
tig0012839 exon 111854 112215 111854 ID=Msa1352820-mRNA-1:exon:8351;Parent=Msa1352820-mRNA-1
tig0012839 exon 112742 112814 112742 ID=Msa1352820-mRNA-1:exon:8352;Parent=Msa1352820-mRNA-1
tig0012839 exon 112917 113029 112917 ID=Msa1352820-mRNA-1:exon:8353;Parent=Msa1352820-mRNA-1
tig0012839 exon 113114 113198 113114 ID=Msa1352820-mRNA-1:exon:8354;Parent=Msa1352820-mRNA-1
tig0012839 exon 113690 113762 113690 ID=Msa1352820-mRNA-1:exon:8355;Parent=Msa1352820-mRNA-1
tig0012839 exon 113893 113948 113893 ID=Msa1352820-mRNA-1:exon:8356;Parent=Msa1352820-mRNA-1
tig0012839 exon 114059 114124 114059 ID=Msa1352820-mRNA-1:exon:8357;Parent=Msa1352820-mRNA-1
tig0012839 exon 114249 114314 114249 ID=Msa1352820-mRNA-1:exon:8358;Parent=Msa1352820-mRNA-1
tig0012839 exon 114397 114824 114397 ID=Msa1352820-mRNA-1:exon:8359;Parent=Msa1352820-mRNA-1
tig0012839 CDS 111854 112215 111854 ID=Msa1352820-mRNA-1:cds;Parent=Msa1352820-mRNA-1
tig0012839 CDS 112742 112814 112742 ID=Msa1352820-mRNA-1:cds;Parent=Msa1352820-mRNA-1
tig0012839 CDS 112917 113029 112917 ID=Msa1352820-mRNA-1:cds;Parent=Msa1352820-mRNA-1
tig0012839 CDS 113114 113198 113114 ID=Msa1352820-mRNA-1:cds;Parent=Msa1352820-mRNA-1
tig0012839 CDS 113690 113762 113690 ID=Msa1352820-mRNA-1:cds;Parent=Msa1352820-mRNA-1
tig0012839 CDS 113893 113948 113893 ID=Msa1352820-mRNA-1:cds;Parent=Msa1352820-mRNA-1
tig0012839 CDS 114059 114124 114059 ID=Msa1352820-mRNA-1:cds;Parent=Msa1352820-mRNA-1
tig0012839 CDS 114249 114314 114249 ID=Msa1352820-mRNA-1:cds;Parent=Msa1352820-mRNA-1
tig0012839 CDS 114397 114477 114397 ID=Msa1352820-mRNA-1:cds;Parent=Msa1352820-mRNA-1
tig0012839 three_prime_UTR 114478 114824 114478 ID=Msa1352820-mRNA-1:three_prime_utr;Parent=Msa1352820-mRNA-1
Gene Sequence

>Msa1352820

ATGAAGTCACCTTTGCATTACAGAAGCAGAATTAAATGCTCTAAACATGAGGGTGAGGAAAATTACGAGGCGTTAAAATCTAAGGATATATTAGATGCACAAGATAGAATTGAGGTGCAAACAAATGGTAAAGAGGGACATAACAAGACAGAGATTCCGTTCCTGGCTATGATTGCAATTGCGTTAGGCATAGCCGCATTAGCTACAATAGCATCCATTCGCCAACAGCCTATTCTAGGATCACCGTCCGGTCTACAGATTCTGTCAGAAGGTTTTTCCTCTTCAGCAGTTGCTCCTGTTGCTGCTGGTTTCACTTTCAAAGTTTTTGGATTCAGCGTTATAATTCCGCAATGTGCACCAGGATGGATCTACTTCTGGTTGCTTATGGCTGCAGGTTGCGGTTTTTTCATCAGTGAAGAGGCTTTAAATATTTGGGTTGGTACGTCAATAGCAAGGCTTCTGTCTCTCGACGGAACATGGCAGTCATTTGCTGAATCTTTCTCAAGGAATGCTCCGTACATCATATCAACCGTTCTATGGGTTTATTGGGGAGTTTGCATTAGTGACATGATACCCTTTTACTTGGGGAAGCTTTTCAGAAAGTCTGGTGCTTCTGCTGATGTTACTTCAAGGTTAGGCATTGGTAAAGAGAAGGCTACAGAAATCACAGACGTTGTACAAAAGTATGGCAATCTTATTGGTTTTGTTGAACGATTCTCTCTTGGAGTGAGAAACCCTACAGCTTTTCTTGCAGGAGCCTTGGGTATTTCTCCGGAGTTGTTTTTTGCAGGGGTCTGTTTTGGGGGTCTGTTCACACTTTCCATTCAGCTGGGAATAGGATTCCTTTTGAGGGAACGGCCGATATTTGCTCTTGCTACTGTCGCAACCGTAATGGGAATTTGGACAATTTTTCCATATGCTGTGGCTGCTTCAACTGCTTTATTCTTTTATGTCAGGCGGAAGTACTTATCTTAG

Protein sequence

>Msa1352820

MKSPLHYRSRIKCSKHEGEENYEALKSKDILDAQDRIEVQTNGKEGHNKTEIPFLAMIAIALGIAALATIASIRQQPILGSPSGLQILSEGFSSSAVAPVAAGFTFKVFGFSVIIPQCAPGWIYFWLLMAAGCGFFISEEALNIWVGTSIARLLSLDGTWQSFAESFSRNAPYIISTVLWVYWGVCISDMIPFYLGKLFRKSGASADVTSRLGIGKEKATEITDVVQKYGNLIGFVERFSLGVRNPTAFLAGALGISPELFFAGVCFGGLFTLSIQLGIGFLLRERPIFALATVATVMGIWTIFPYAVAASTALFFYVRRKYLS*