Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726660 | XP_003614004.1 | 80.162 | 247 | 11 | 1 | 8 | 216 | 1 | 247 | 4.23e-122 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726660 | sp|Q54HW1|PSD10_DICDI | 39.850 | 133 | 77 | 2 | 65 | 195 | 84 | 215 | 5.50e-23 | 95.5 |
| Msa0726660 | sp|Q54HW1|PSD10_DICDI | 35.514 | 107 | 68 | 1 | 77 | 182 | 31 | 137 | 4.45e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726660 | G7JXW1 | 80.162 | 247 | 11 | 1 | 8 | 216 | 1 | 247 | 2.02e-122 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610390 | Msa0726660 | 0.828982 | 6.641708e-55 | -8.615850e-47 |
| Msa0650920 | Msa0726660 | 0.832149 | 1.114351e-55 | -8.615850e-47 |
| Msa0663900 | Msa0726660 | 0.807368 | 5.230254e-50 | -8.615850e-47 |
| Msa0687630 | Msa0726660 | 0.800096 | 1.691342e-48 | -8.615850e-47 |
| Msa0692840 | Msa0726660 | 0.820359 | 7.152228e-53 | -8.615850e-47 |
| Msa0692940 | Msa0726660 | 0.822166 | 2.739343e-53 | -8.615850e-47 |
| Msa0726660 | Msa0763020 | 0.803959 | 2.717792e-49 | -8.615850e-47 |
| Msa0726660 | Msa0763070 | 0.809110 | 2.224684e-50 | -8.615850e-47 |
| Msa0726660 | Msa0790850 | 0.801545 | 8.558611e-49 | -8.615850e-47 |
| Msa0726660 | Msa0805500 | 0.813360 | 2.663253e-51 | -8.615850e-47 |
| Msa0726660 | Msa0900630 | 0.802615 | 5.157494e-49 | -8.615850e-47 |
| Msa0726660 | Msa0926460 | 0.803734 | 3.027008e-49 | -8.615850e-47 |
| Msa0726660 | Msa0974810 | 0.820963 | 5.194753e-53 | -8.615850e-47 |
| Msa0726660 | Msa1204250 | 0.807800 | 4.235477e-50 | -8.615850e-47 |
| Msa0726660 | Msa1286510 | 0.800309 | 1.530838e-48 | -8.615850e-47 |
| Msa0726660 | Msa1333110 | 0.804798 | 1.817013e-49 | -8.615850e-47 |
| Msa0726660 | Msa1376650 | 0.801285 | 9.675681e-49 | -8.615850e-47 |
| Msa0726660 | Msa1397940 | 0.811526 | 6.700171e-51 | -8.615850e-47 |
| Msa0726660 | Msa1403800 | 0.805148 | 1.535584e-49 | -8.615850e-47 |
| Msa0199690 | Msa0726660 | 0.827321 | 1.669095e-54 | -8.615850e-47 |
| Msa0199880 | Msa0726660 | 0.800203 | 1.609087e-48 | -8.615850e-47 |
| Msa0280430 | Msa0726660 | 0.814333 | 1.624817e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726660 | MtrunA17_Chr5g0418551 | 80.162 | 247 | 11 | 1 | 8 | 216 | 1 | 247 | 3.89e-126 | 356 |
| Msa0726660 | MtrunA17_Chr2g0303671 | 37.931 | 116 | 72 | 0 | 80 | 195 | 169 | 284 | 1.63e-17 | 79.3 |
| Msa0726660 | MtrunA17_Chr3g0127131 | 41.237 | 97 | 57 | 0 | 95 | 191 | 240 | 336 | 3.09e-16 | 76.3 |
| Msa0726660 | MtrunA17_Chr3g0127131 | 36.957 | 92 | 55 | 1 | 80 | 171 | 258 | 346 | 7.49e-15 | 72.4 |
| Msa0726660 | MtrunA17_Chr7g0274241 | 32.667 | 150 | 96 | 3 | 50 | 195 | 43 | 191 | 3.73e-15 | 73.6 |
| Msa0726660 | MtrunA17_Chr1g0211241 | 36.975 | 119 | 66 | 4 | 66 | 177 | 240 | 356 | 4.29e-15 | 73.6 |
| Msa0726660 | MtrunA17_Chr1g0211241 | 32.051 | 156 | 97 | 3 | 44 | 195 | 123 | 273 | 1.14e-12 | 66.2 |
| Msa0726660 | MtrunA17_Chr1g0148981 | 32.544 | 169 | 71 | 4 | 58 | 193 | 620 | 778 | 2.10e-14 | 71.6 |
| Msa0726660 | MtrunA17_Chr4g0049351 | 32.215 | 149 | 95 | 3 | 65 | 208 | 127 | 274 | 5.57e-14 | 70.1 |
| Msa0726660 | MtrunA17_Chr2g0284901 | 43.678 | 87 | 49 | 0 | 96 | 182 | 42 | 128 | 1.15e-13 | 69.3 |
| Msa0726660 | MtrunA17_Chr8g0361891 | 33.019 | 106 | 71 | 0 | 77 | 182 | 247 | 352 | 1.33e-13 | 68.6 |
| Msa0726660 | MtrunA17_Chr8g0361891 | 28.966 | 145 | 94 | 4 | 10 | 149 | 212 | 352 | 8.24e-11 | 60.5 |
| Msa0726660 | MtrunA17_Chr4g0064931 | 36.134 | 119 | 71 | 2 | 64 | 177 | 139 | 257 | 3.15e-13 | 68.2 |
| Msa0726660 | MtrunA17_Chr4g0064931 | 31.884 | 138 | 90 | 2 | 62 | 195 | 37 | 174 | 8.75e-11 | 60.8 |
| Msa0726660 | MtrunA17_Chr6g0461061 | 32.237 | 152 | 100 | 2 | 47 | 195 | 163 | 314 | 4.23e-13 | 67.8 |
| Msa0726660 | MtrunA17_Chr6g0461061 | 31.169 | 154 | 83 | 2 | 65 | 195 | 314 | 467 | 2.34e-12 | 65.5 |
| Msa0726660 | MtrunA17_Chr6g0461061 | 32.824 | 131 | 84 | 1 | 85 | 215 | 170 | 296 | 3.31e-11 | 62.0 |
| Msa0726660 | MtrunA17_Chr7g0263471 | 32.571 | 175 | 112 | 4 | 27 | 195 | 124 | 298 | 6.69e-13 | 67.0 |
| Msa0726660 | MtrunA17_Chr3g0125011 | 39.560 | 91 | 55 | 0 | 76 | 166 | 37 | 127 | 6.86e-13 | 63.9 |
| Msa0726660 | MtrunA17_Chr3g0125011 | 30.556 | 144 | 94 | 3 | 11 | 152 | 7 | 146 | 1.28e-11 | 60.5 |
| Msa0726660 | MtrunA17_Chr1g0211231 | 32.800 | 125 | 79 | 2 | 58 | 177 | 93 | 217 | 2.61e-12 | 65.5 |
| Msa0726660 | MtrunA17_Chr5g0434371 | 33.113 | 151 | 68 | 2 | 60 | 177 | 587 | 737 | 2.72e-12 | 65.5 |
| Msa0726660 | MtrunA17_Chr5g0434371 | 34.211 | 114 | 73 | 1 | 82 | 195 | 578 | 689 | 4.91e-11 | 61.6 |
| Msa0726660 | MtrunA17_Chr3g0079591 | 36.667 | 120 | 74 | 1 | 60 | 177 | 223 | 342 | 2.88e-12 | 64.7 |
| Msa0726660 | MtrunA17_Chr5g0406201 | 30.556 | 144 | 98 | 1 | 54 | 195 | 294 | 437 | 6.12e-12 | 64.3 |
| Msa0726660 | MtrunA17_Chr1g0196261 | 33.333 | 141 | 71 | 3 | 65 | 182 | 290 | 430 | 6.64e-12 | 63.9 |
| Msa0726660 | MtrunA17_Chr6g0485681 | 34.921 | 126 | 70 | 3 | 94 | 207 | 50 | 175 | 8.29e-12 | 63.9 |
| Msa0726660 | MtrunA17_Chr7g0276681 | 33.158 | 190 | 111 | 8 | 17 | 195 | 72 | 256 | 9.47e-12 | 63.5 |
| Msa0726660 | MtrunA17_Chr3g0138141 | 31.034 | 145 | 69 | 1 | 80 | 193 | 122 | 266 | 9.81e-12 | 63.5 |
| Msa0726660 | MtrunA17_Chr5g0443471 | 37.363 | 91 | 57 | 0 | 96 | 186 | 54 | 144 | 1.20e-11 | 63.2 |
| Msa0726660 | MtrunA17_Chr4g0063141 | 30.137 | 146 | 70 | 1 | 80 | 193 | 539 | 684 | 1.64e-11 | 63.2 |
| Msa0726660 | MtrunA17_Chr4g0073161 | 39.000 | 100 | 49 | 3 | 78 | 165 | 163 | 262 | 1.82e-11 | 62.8 |
| Msa0726660 | MtrunA17_Chr5g0409271 | 32.520 | 123 | 83 | 0 | 85 | 207 | 38 | 160 | 2.42e-11 | 61.6 |
| Msa0726660 | MtrunA17_Chr5g0405451 | 33.735 | 83 | 55 | 0 | 80 | 162 | 323 | 405 | 2.66e-11 | 62.4 |
| Msa0726660 | MtrunA17_Chr5g0405451 | 30.556 | 144 | 98 | 1 | 54 | 195 | 262 | 405 | 3.28e-11 | 62.0 |
| Msa0726660 | MtrunA17_Chr4g0030551 | 30.286 | 175 | 104 | 5 | 28 | 195 | 48 | 211 | 4.92e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726660 | AT2G03430.1 | 58.436 | 243 | 59 | 3 | 12 | 216 | 1 | 239 | 8.35e-92 | 269 |
| Msa0726660 | AT5G66055.1 | 34.328 | 134 | 86 | 1 | 65 | 196 | 264 | 397 | 8.54e-16 | 75.9 |
| Msa0726660 | AT4G19150.1 | 33.824 | 136 | 85 | 3 | 29 | 161 | 19 | 152 | 1.24e-15 | 73.6 |
| Msa0726660 | AT4G27780.1 | 38.554 | 83 | 51 | 0 | 80 | 162 | 254 | 336 | 1.67e-14 | 71.6 |
| Msa0726660 | AT4G27780.1 | 33.663 | 101 | 67 | 0 | 95 | 195 | 236 | 336 | 4.34e-12 | 64.7 |
| Msa0726660 | AT2G26650.1 | 31.724 | 145 | 68 | 2 | 80 | 193 | 539 | 683 | 8.31e-14 | 70.1 |
| Msa0726660 | AT2G26650.2 | 31.724 | 145 | 68 | 2 | 80 | 193 | 434 | 578 | 9.76e-14 | 70.1 |
| Msa0726660 | AT5G20350.1 | 34.043 | 141 | 83 | 4 | 66 | 199 | 136 | 273 | 1.41e-13 | 69.3 |
| Msa0726660 | AT5G20350.1 | 32.258 | 155 | 93 | 4 | 48 | 195 | 20 | 169 | 2.61e-12 | 65.9 |
| Msa0726660 | AT3G04710.2 | 31.250 | 144 | 95 | 2 | 55 | 195 | 49 | 191 | 1.44e-13 | 69.3 |
| Msa0726660 | AT3G04710.1 | 31.250 | 144 | 95 | 2 | 55 | 195 | 49 | 191 | 1.44e-13 | 69.3 |
| Msa0726660 | AT3G04710.1 | 29.954 | 217 | 112 | 5 | 17 | 195 | 42 | 256 | 7.17e-11 | 61.2 |
| Msa0726660 | AT3G04710.3 | 31.250 | 144 | 95 | 2 | 55 | 195 | 273 | 415 | 1.59e-13 | 69.3 |
| Msa0726660 | AT3G04710.3 | 29.954 | 217 | 112 | 5 | 17 | 195 | 266 | 480 | 7.81e-11 | 61.6 |
| Msa0726660 | AT2G14255.1 | 28.085 | 235 | 128 | 5 | 19 | 214 | 17 | 249 | 2.26e-13 | 68.9 |
| Msa0726660 | AT5G53470.1 | 36.000 | 100 | 62 | 1 | 65 | 162 | 222 | 321 | 3.31e-13 | 67.8 |
| Msa0726660 | AT5G53470.1 | 34.653 | 101 | 66 | 0 | 95 | 195 | 221 | 321 | 1.54e-12 | 65.9 |
| Msa0726660 | AT4G35450.2 | 37.607 | 117 | 71 | 1 | 63 | 177 | 220 | 336 | 6.02e-13 | 67.0 |
| Msa0726660 | AT4G35450.3 | 37.607 | 117 | 71 | 1 | 63 | 177 | 220 | 336 | 6.02e-13 | 67.0 |
| Msa0726660 | AT4G35450.1 | 37.607 | 117 | 71 | 1 | 63 | 177 | 220 | 336 | 6.02e-13 | 67.0 |
| Msa0726660 | AT4G35450.4 | 37.607 | 117 | 71 | 1 | 63 | 177 | 182 | 298 | 6.87e-13 | 66.6 |
| Msa0726660 | AT4G35450.5 | 37.607 | 117 | 71 | 1 | 63 | 177 | 228 | 344 | 7.19e-13 | 67.0 |
| Msa0726660 | AT3G02850.1 | 37.069 | 116 | 71 | 2 | 80 | 195 | 569 | 682 | 1.55e-12 | 66.6 |
| Msa0726660 | AT3G02850.1 | 35.099 | 151 | 65 | 2 | 60 | 177 | 580 | 730 | 1.96e-12 | 66.2 |
| Msa0726660 | AT3G02850.2 | 37.069 | 116 | 71 | 2 | 80 | 195 | 569 | 682 | 1.92e-12 | 66.2 |
| Msa0726660 | AT3G02850.2 | 35.099 | 151 | 65 | 2 | 60 | 177 | 580 | 730 | 2.62e-12 | 65.9 |
| Msa0726660 | AT1G07710.2 | 37.008 | 127 | 75 | 3 | 60 | 181 | 168 | 294 | 3.11e-12 | 65.5 |
| Msa0726660 | AT1G07710.1 | 37.008 | 127 | 75 | 3 | 60 | 181 | 168 | 294 | 3.11e-12 | 65.5 |
| Msa0726660 | AT1G05640.1 | 31.746 | 189 | 117 | 5 | 21 | 200 | 148 | 333 | 3.75e-12 | 65.5 |
| Msa0726660 | AT5G13530.2 | 32.576 | 132 | 82 | 3 | 88 | 216 | 507 | 634 | 5.85e-12 | 65.1 |
| Msa0726660 | AT5G13530.1 | 32.576 | 132 | 82 | 3 | 88 | 216 | 507 | 634 | 5.85e-12 | 65.1 |
| Msa0726660 | AT4G19150.2 | 33.333 | 99 | 64 | 1 | 65 | 161 | 31 | 129 | 1.00e-11 | 62.4 |
| Msa0726660 | AT2G25600.1 | 31.757 | 148 | 70 | 1 | 80 | 196 | 565 | 712 | 1.15e-11 | 63.9 |
| Msa0726660 | AT2G25600.1 | 29.487 | 156 | 77 | 2 | 58 | 180 | 574 | 729 | 4.93e-11 | 62.0 |
| Msa0726660 | AT4G32500.1 | 32.414 | 145 | 67 | 1 | 80 | 193 | 563 | 707 | 1.62e-11 | 63.5 |
| Msa0726660 | AT2G17390.1 | 35.043 | 117 | 74 | 1 | 63 | 177 | 222 | 338 | 2.48e-11 | 62.4 |
| Msa0726660 | AT5G40160.1 | 30.172 | 116 | 81 | 0 | 80 | 195 | 173 | 288 | 2.74e-11 | 62.4 |
| Msa0726660 | AT2G31820.1 | 30.978 | 184 | 115 | 5 | 21 | 195 | 184 | 364 | 3.06e-11 | 62.8 |
| Msa0726660 | AT5G12320.1 | 35.955 | 89 | 57 | 0 | 78 | 166 | 30 | 118 | 3.35e-11 | 59.7 |
| Msa0726660 | AT5G02620.5 | 39.252 | 107 | 60 | 4 | 65 | 166 | 129 | 235 | 5.03e-11 | 62.0 |
| Msa0726660 | AT5G02620.2 | 39.252 | 107 | 60 | 4 | 65 | 166 | 129 | 235 | 5.03e-11 | 62.0 |
| Msa0726660 | AT5G02620.4 | 35.537 | 121 | 73 | 4 | 65 | 180 | 129 | 249 | 5.87e-11 | 61.6 |
| Msa0726660 | AT5G02620.1 | 35.537 | 121 | 73 | 4 | 65 | 180 | 129 | 249 | 5.87e-11 | 61.6 |
| Msa0726660 | AT5G02620.3 | 35.537 | 121 | 73 | 4 | 65 | 180 | 129 | 249 | 5.87e-11 | 61.6 |
| Msa0726660 | AT3G58760.6 | 39.080 | 87 | 53 | 0 | 96 | 182 | 53 | 139 | 7.21e-11 | 61.2 |
| Msa0726660 | AT5G13300.1 | 36.364 | 88 | 54 | 1 | 77 | 162 | 712 | 799 | 8.71e-11 | 61.2 |
| Msa0726660 | AT3G58760.1 | 39.080 | 87 | 53 | 0 | 96 | 182 | 53 | 139 | 9.28e-11 | 61.2 |
Find 51 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATATTAATGTTGGCATTA+TGG | 0.222000 | 5_1:+27943640 | None:intergenic |
| CTTCATGTTGCCGCTTCTTT+TGG | 0.229765 | 5_1:-27946093 | Msa0726660:CDS |
| TATATTAATGTTGGCATTAT+GGG | 0.246874 | 5_1:+27943641 | None:intergenic |
| AATCTTCATCCGACCTTTGC+TGG | 0.277498 | 5_1:+27943680 | None:intergenic |
| AGGTAGCACTCCTTCTTATA+AGG | 0.293510 | 5_1:-27941236 | Msa0726660:CDS |
| TAATGCCAACATTAATATAA+AGG | 0.359237 | 5_1:-27943637 | Msa0726660:CDS |
| CAGCACTCATTAGAGGAGTT+TGG | 0.367957 | 5_1:+27943366 | None:intergenic |
| TTGCATCGGGCAGCTAGCAC+TGG | 0.380682 | 5_1:-27943455 | Msa0726660:CDS |
| CAAATCACAGCACTCATTAG+AGG | 0.411537 | 5_1:+27943359 | None:intergenic |
| TCAGGTACTCTTTCCTCAAA+AGG | 0.414778 | 5_1:-27946064 | Msa0726660:CDS |
| TGGTTCCACTCCGTTGCATC+GGG | 0.430682 | 5_1:-27943468 | Msa0726660:CDS |
| TTGGTTCCACTCCGTTGCAT+CGG | 0.444724 | 5_1:-27943469 | Msa0726660:CDS |
| CTTGTCCTTTATATTAATGT+TGG | 0.455131 | 5_1:+27943632 | None:intergenic |
| GTATCATTCGAGCATGGTCT+TGG | 0.456540 | 5_1:+27941119 | None:intergenic |
| AATGGTCATACACATAAAAC+AGG | 0.457405 | 5_1:+27941059 | None:intergenic |
| GCATTCTTAACCAGTATTTG+AGG | 0.457637 | 5_1:-27940974 | Msa0726660:three_prime_UTR |
| GTTTCTAAGAGAAAGTGCTT+TGG | 0.459972 | 5_1:+27946134 | None:intergenic |
| GTGACAATAACCTCAAATAC+TGG | 0.472834 | 5_1:+27940964 | None:intergenic |
| CAGCTCCATGCCTTATAAGA+AGG | 0.506226 | 5_1:+27941226 | None:intergenic |
| CAGGTACTCTTTCCTCAAAA+GGG | 0.516584 | 5_1:-27946063 | Msa0726660:intron |
| TTTGCTGGCTGCATAGTGTA+AGG | 0.518159 | 5_1:+27943695 | None:intergenic |
| GTGCTAGCTGCCCGATGCAA+CGG | 0.528128 | 5_1:+27943458 | None:intergenic |
| TACGATATTCTCAAATCAGA+AGG | 0.529141 | 5_1:+27940915 | None:intergenic |
| GATACTAACACAAGAGAATG+AGG | 0.535878 | 5_1:-27941101 | Msa0726660:three_prime_UTR |
| GTGGATGTGGAGGACAAGGA+AGG | 0.535885 | 5_1:-27941201 | Msa0726660:CDS |
| AAGAGACAGATATGCAAGGT+TGG | 0.541804 | 5_1:+27941005 | None:intergenic |
| TGACCATTGAGAGCATTCAA+TGG | 0.542257 | 5_1:-27941044 | Msa0726660:three_prime_UTR |
| TTATTCAAAGCAGCAGAAGA+AGG | 0.547217 | 5_1:-27946198 | Msa0726660:CDS |
| TGCATCGGGCAGCTAGCACT+GGG | 0.548238 | 5_1:-27943454 | Msa0726660:CDS |
| AAGCCATTGAATGCTCTCAA+TGG | 0.548310 | 5_1:+27941041 | None:intergenic |
| GCAAGAAACCATAAAAGAGA+AGG | 0.557034 | 5_1:-27946223 | Msa0726660:CDS |
| AAGGAAGGGTACACAGTGCT+TGG | 0.557442 | 5_1:-27941186 | Msa0726660:CDS |
| GCACTCCTTCTTATAAGGCA+TGG | 0.559998 | 5_1:-27941231 | Msa0726660:CDS |
| TGTGATTTGTTATAACAAAG+AGG | 0.565384 | 5_1:-27943345 | Msa0726660:intron |
| TATAAGGCATGGAGCTGATG+TGG | 0.580824 | 5_1:-27941220 | Msa0726660:CDS |
| TTCAGAGGACAATGATTCGA+AGG | 0.582576 | 5_1:+27946164 | None:intergenic |
| GACAGATATGCAAGGTTGGT+AGG | 0.582866 | 5_1:+27941009 | None:intergenic |
| TGCTTTGGAGAGTGATTCAG+AGG | 0.583109 | 5_1:+27946149 | None:intergenic |
| GCATGGAGCTGATGTGGATG+TGG | 0.584567 | 5_1:-27941214 | Msa0726660:CDS |
| TTACACTATGCAGCCAGCAA+AGG | 0.589849 | 5_1:-27943693 | Msa0726660:CDS |
| GTTGATGCTGTTGATAGAGC+TGG | 0.590671 | 5_1:-27943389 | Msa0726660:CDS |
| GTGTTAGTATCATTCGAGCA+TGG | 0.603535 | 5_1:+27941113 | None:intergenic |
| CAACATTAATATAAAGGACA+AGG | 0.613454 | 5_1:-27943631 | Msa0726660:intron |
| AGCTGCCCGATGCAACGGAG+TGG | 0.615595 | 5_1:+27943463 | None:intergenic |
| TGATGTGGATGTGGAGGACA+AGG | 0.620882 | 5_1:-27941205 | Msa0726660:CDS |
| ACTATGCAGCCAGCAAAGGT+CGG | 0.624620 | 5_1:-27943689 | Msa0726660:CDS |
| CTGAGAGTGACCAAAAGAAG+CGG | 0.635993 | 5_1:+27946083 | None:intergenic |
| TGGATGTGGAGGACAAGGAA+GGG | 0.643078 | 5_1:-27941200 | Msa0726660:CDS |
| AATCAAAGTGAACATGAACA+TGG | 0.649978 | 5_1:-27946265 | Msa0726660:CDS |
| TGGAGCTGATGTGGATGTGG+AGG | 0.658645 | 5_1:-27941211 | Msa0726660:CDS |
| ACACAAGAGAATGAGGAACA+AGG | 0.684867 | 5_1:-27941094 | Msa0726660:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTTATGCAATTTA+AGG | + | chr5_1:27941185-27941204 | None:intergenic | 10.0% |
| !!! | CATAAAAATTTAATCTTTTT+TGG | - | chr5_1:27941192-27941211 | Msa0726660:CDS | 10.0% |
| !!! | GTCTTATTTATAATTTTTTA+AGG | - | chr5_1:27941755-27941774 | Msa0726660:intron | 10.0% |
| !! | ATGTTAATATTAAAAACAAT+GGG | - | chr5_1:27943481-27943500 | Msa0726660:intron | 10.0% |
| !!! | AATAAATTAATTACAAGTTT+TGG | - | chr5_1:27944455-27944474 | Msa0726660:intron | 10.0% |
| !! | ATTCCAAAAATAAAATAAAA+TGG | - | chr5_1:27945577-27945596 | Msa0726660:intron | 10.0% |
| !!! | AATCCATTTTATTTTATTTT+TGG | + | chr5_1:27945583-27945602 | None:intergenic | 10.0% |
| !! | ATAAACTTCTAATAGATTTA+GGG | - | chr5_1:27941991-27942010 | Msa0726660:intron | 15.0% |
| !! | GATGTTAATATTAAAAACAA+TGG | - | chr5_1:27943480-27943499 | Msa0726660:intron | 15.0% |
| !! | TGTTAATATTAAAAACAATG+GGG | - | chr5_1:27943482-27943501 | Msa0726660:intron | 15.0% |
| !! | AATGTGATTATAATGAAAAT+GGG | + | chr5_1:27943662-27943681 | None:intergenic | 15.0% |
| !! | TAATGTGATTATAATGAAAA+TGG | + | chr5_1:27943663-27943682 | None:intergenic | 15.0% |
| !! | AAAATTGATACGATTAAAAA+AGG | + | chr5_1:27945171-27945190 | None:intergenic | 15.0% |
| !!! | AAAAGAACATAATTTTACAT+GGG | + | chr5_1:27945280-27945299 | None:intergenic | 15.0% |
| !!! | AAAAAGAACATAATTTTACA+TGG | + | chr5_1:27945281-27945300 | None:intergenic | 15.0% |
| !!! | TAAGAGATTTAGAATCTATT+AGG | - | chr5_1:27941524-27941543 | Msa0726660:intron | 20.0% |
| !!! | GACTTAATTTTATCTTATGT+TGG | - | chr5_1:27941676-27941695 | Msa0726660:intron | 20.0% |
| !! | AAAAACAGTTTATGAAGATA+TGG | - | chr5_1:27941788-27941807 | Msa0726660:intron | 20.0% |
| !! | CATAAACTTCTAATAGATTT+AGG | - | chr5_1:27941990-27942009 | Msa0726660:intron | 20.0% |
| !! | ATGAAATAGTCAATTCATAT+AGG | + | chr5_1:27942205-27942224 | None:intergenic | 20.0% |
| !! | AATAAGGTAAAAATAGCTTA+TGG | + | chr5_1:27942300-27942319 | None:intergenic | 20.0% |
| !! | ATATCCTAACAGTAATAATT+TGG | - | chr5_1:27943294-27943313 | Msa0726660:intron | 20.0% |
| !! | TATCCTAACAGTAATAATTT+GGG | - | chr5_1:27943295-27943314 | Msa0726660:intron | 20.0% |
| !! | GTTAATATTAAAAACAATGG+GGG | - | chr5_1:27943483-27943502 | Msa0726660:intron | 20.0% |
| !! | TATATTAATGTTGGCATTAT+GGG | + | chr5_1:27943571-27943590 | None:intergenic | 20.0% |
| !! | TTATATTAATGTTGGCATTA+TGG | + | chr5_1:27943572-27943591 | None:intergenic | 20.0% |
| !! | TAATGCCAACATTAATATAA+AGG | - | chr5_1:27943572-27943591 | Msa0726660:intron | 20.0% |
| !!! | ACAAAAGTATGATAAGAAAT+AGG | + | chr5_1:27944123-27944142 | None:intergenic | 20.0% |
| !!! | TCAACTTTTATTTTAAGTCA+CGG | + | chr5_1:27944594-27944613 | None:intergenic | 20.0% |
| !!! | TAATCGTATCAATTTTGTTT+TGG | - | chr5_1:27945175-27945194 | Msa0726660:intron | 20.0% |
| !!! | TTTAAGATAATATAACAGTG+TGG | + | chr5_1:27945374-27945393 | None:intergenic | 20.0% |
| !! | GAAAACAAAATAATAGAAAC+TGG | + | chr5_1:27945519-27945538 | None:intergenic | 20.0% |
| !! | TCTTCTATTTAGTACTTAAA+AGG | - | chr5_1:27945646-27945665 | Msa0726660:intron | 20.0% |
| !! | CAGAATTATATAATTTCCTT+TGG | + | chr5_1:27945816-27945835 | None:intergenic | 20.0% |
| !! | AAAAGTCTATGATAAGAAAT+AGG | - | chr5_1:27945861-27945880 | Msa0726660:intron | 20.0% |
| !!! | ATAAAAATCTTTTCTGTGTT+TGG | - | chr5_1:27945945-27945964 | Msa0726660:intron | 20.0% |
| !! | GAATAAATCCTTCTCTTTTA+TGG | + | chr5_1:27940997-27941016 | None:intergenic | 25.0% |
| !! | TTTTTATCAGAACCCTAAAT+TGG | - | chr5_1:27941216-27941235 | Msa0726660:CDS | 25.0% |
| !! | TTTTATCAGAACCCTAAATT+GGG | - | chr5_1:27941217-27941236 | Msa0726660:CDS | 25.0% |
| ! | AGTAAAAACCAAATTTGTGA+AGG | - | chr5_1:27941252-27941271 | Msa0726660:intron | 25.0% |
| ! | TCAAAAGTAAAGACTCAATT+TGG | + | chr5_1:27941308-27941327 | None:intergenic | 25.0% |
| !!! | AATTTGAAGCTTTGTTTATC+AGG | - | chr5_1:27941340-27941359 | Msa0726660:intron | 25.0% |
| !! | ACTTATTCGAGTTTATCTAT+TGG | - | chr5_1:27941551-27941570 | Msa0726660:intron | 25.0% |
| !! | TAATAGATTTAGGGTATGTT+TGG | - | chr5_1:27942000-27942019 | Msa0726660:intron | 25.0% |
| ! | TTTCATTTGTGTTTATCTGT+TGG | - | chr5_1:27942219-27942238 | Msa0726660:intron | 25.0% |
| ! | CTAAAGATCTTATCGAAATA+AGG | + | chr5_1:27942316-27942335 | None:intergenic | 25.0% |
| ! | CTTATTTCGATAAGATCTTT+AGG | - | chr5_1:27942314-27942333 | Msa0726660:intron | 25.0% |
| !!! | TTGTGCTTTTTTATTGAAGT+AGG | - | chr5_1:27942386-27942405 | Msa0726660:intron | 25.0% |
| !!! | TGTGCTTTTTTATTGAAGTA+GGG | - | chr5_1:27942387-27942406 | Msa0726660:intron | 25.0% |
| ! | AATTTAACAGTCTCAATTCA+AGG | + | chr5_1:27942494-27942513 | None:intergenic | 25.0% |
| ! | TGAATTGAGACTGTTAAATT+TGG | - | chr5_1:27942494-27942513 | Msa0726660:intron | 25.0% |
| !!! | TATTTTAAGAAAGGTACATG+TGG | - | chr5_1:27942543-27942562 | Msa0726660:intron | 25.0% |
| !!! | TTGTCGTGTTTATGTTTTTA+TGG | - | chr5_1:27942729-27942748 | Msa0726660:intron | 25.0% |
| ! | AATATAATCATGAAGTGTGT+GGG | + | chr5_1:27942872-27942891 | None:intergenic | 25.0% |
| ! | AAATATAATCATGAAGTGTG+TGG | + | chr5_1:27942873-27942892 | None:intergenic | 25.0% |
| ! | TATAGAATAGTGGTATAGAA+TGG | + | chr5_1:27943277-27943296 | None:intergenic | 25.0% |
| ! | TTTCCCAAATTATTACTGTT+AGG | + | chr5_1:27943301-27943320 | None:intergenic | 25.0% |
| !! | ACGTTCTTATTCTTCATTTT+TGG | - | chr5_1:27943449-27943468 | Msa0726660:CDS | 25.0% |
| !!! | TCTTATTCTTCATTTTTGGT+AGG | - | chr5_1:27943453-27943472 | Msa0726660:CDS | 25.0% |
| ! | CTTGTCCTTTATATTAATGT+TGG | + | chr5_1:27943580-27943599 | None:intergenic | 25.0% |
| ! | CAACATTAATATAAAGGACA+AGG | - | chr5_1:27943578-27943597 | Msa0726660:intron | 25.0% |
| ! | TTGTAAACTGTAATATGATC+AGG | - | chr5_1:27943717-27943736 | Msa0726660:CDS | 25.0% |
| !!! | TGTGATTTGTTATAACAAAG+AGG | - | chr5_1:27943864-27943883 | Msa0726660:intron | 25.0% |
| !!! | ACAGTTGATTTTTCAATCAA+TGG | - | chr5_1:27944041-27944060 | Msa0726660:intron | 25.0% |
| !! | AACCATTCATATTAAGCTTT+TGG | - | chr5_1:27944491-27944510 | Msa0726660:intron | 25.0% |
| ! | TTCCAAAAGCTTAATATGAA+TGG | + | chr5_1:27944496-27944515 | None:intergenic | 25.0% |
| !!! | TATTAAGCTTTTGGAATAGA+TGG | - | chr5_1:27944500-27944519 | Msa0726660:intron | 25.0% |
| !!! | AACTTTTATTTTAAGTCACG+GGG | + | chr5_1:27944592-27944611 | None:intergenic | 25.0% |
| !!! | CAACTTTTATTTTAAGTCAC+GGG | + | chr5_1:27944593-27944612 | None:intergenic | 25.0% |
| ! | TAATGTGAAGAAATAGTGTT+GGG | + | chr5_1:27944763-27944782 | None:intergenic | 25.0% |
| ! | ATAATGTGAAGAAATAGTGT+TGG | + | chr5_1:27944764-27944783 | None:intergenic | 25.0% |
| ! | GTTAAAAAGATTAAGCAAAC+AGG | - | chr5_1:27944824-27944843 | Msa0726660:intron | 25.0% |
| !! | AGCTTAGTATACTTTAACTT+TGG | - | chr5_1:27945326-27945345 | Msa0726660:intron | 25.0% |
| !! | GCTTAGTATACTTTAACTTT+GGG | - | chr5_1:27945327-27945346 | Msa0726660:intron | 25.0% |
| !! | ATTTGTTTCCATTTTGAATG+AGG | - | chr5_1:27945430-27945449 | Msa0726660:intron | 25.0% |
| !! | TTTGTTTCCATTTTGAATGA+GGG | - | chr5_1:27945431-27945450 | Msa0726660:intron | 25.0% |
| !!! | AACTTTTAAGACGTTATAGA+AGG | - | chr5_1:27945689-27945708 | Msa0726660:intron | 25.0% |
| !! | CTATGATAAGAAATAGGTTT+TGG | - | chr5_1:27945867-27945886 | Msa0726660:intron | 25.0% |
| !! | TATTGGAGTCTTCATAATTT+TGG | - | chr5_1:27945899-27945918 | Msa0726660:intron | 25.0% |
| AATCAAAGTGAACATGAACA+TGG | - | chr5_1:27940944-27940963 | Msa0726660:three_prime_UTR | 30.0% | |
| TTTATCAGAACCCTAAATTG+GGG | - | chr5_1:27941218-27941237 | Msa0726660:CDS | 30.0% | |
| CTAAGTAAAACCCCAATTTA+GGG | + | chr5_1:27941231-27941250 | None:intergenic | 30.0% | |
| AATTCAGTCCTTCACAAATT+TGG | + | chr5_1:27941263-27941282 | None:intergenic | 30.0% | |
| AAATTTGTGAAGGACTGAAT+TGG | - | chr5_1:27941262-27941281 | Msa0726660:intron | 30.0% | |
| AATTTGTGAAGGACTGAATT+GGG | - | chr5_1:27941263-27941282 | Msa0726660:intron | 30.0% | |
| ! | ATAAATAGTGGTGATGAAGA+AGG | - | chr5_1:27941404-27941423 | Msa0726660:intron | 30.0% |
| ! | TAAATAGTGGTGATGAAGAA+GGG | - | chr5_1:27941405-27941424 | Msa0726660:intron | 30.0% |
| AAGTTCTCATGAAGAGTTTA+TGG | + | chr5_1:27941621-27941640 | None:intergenic | 30.0% | |
| TAAAGATATGTCTGGAAGTA+GGG | + | chr5_1:27942179-27942198 | None:intergenic | 30.0% | |
| TACTTCCAGACATATCTTTA+GGG | - | chr5_1:27942179-27942198 | Msa0726660:intron | 30.0% | |
| AAACACTTGTCAGATTGTTT+CGG | - | chr5_1:27942245-27942264 | Msa0726660:intron | 30.0% | |
| !!! | GCTGGACTTTATTTTAAGAA+AGG | - | chr5_1:27942534-27942553 | Msa0726660:intron | 30.0% |
| ! | CAGTAAACCTTTAAGAACTA+TGG | + | chr5_1:27942821-27942840 | None:intergenic | 30.0% |
| CATTTGCAATGTAGAAATGA+AGG | - | chr5_1:27942893-27942912 | Msa0726660:intron | 30.0% | |
| CATAGACATTTGTAACTGTT+AGG | - | chr5_1:27942951-27942970 | Msa0726660:intron | 30.0% | |
| TAGTTAGTTGAGGTTGTTAT+AGG | + | chr5_1:27943159-27943178 | None:intergenic | 30.0% | |
| ! | TTAGCTAGTTTAGTTAGTTG+AGG | + | chr5_1:27943169-27943188 | None:intergenic | 30.0% |
| AGAATGGTACTTAGTTAGTT+GGG | + | chr5_1:27943207-27943226 | None:intergenic | 30.0% | |
| ! | GTTGTTATAGTCTTACAGAA+TGG | + | chr5_1:27943223-27943242 | None:intergenic | 30.0% |
| ACTGTTAGGATATAGAATAG+TGG | + | chr5_1:27943287-27943306 | None:intergenic | 30.0% | |
| ! | CTGAAGTGTTAGTGTTATAT+AGG | - | chr5_1:27943401-27943420 | Msa0726660:CDS | 30.0% |
| AATGAAGAATAAGAACGTTC+AGG | + | chr5_1:27943447-27943466 | None:intergenic | 30.0% | |
| AAACTGTAATATGATCAGGT+TGG | - | chr5_1:27943721-27943740 | Msa0726660:CDS | 30.0% | |
| !! | TGTGAACTTTTGATTGAAGA+AGG | - | chr5_1:27943790-27943809 | Msa0726660:intron | 30.0% |
| ! | TGTTCGTACAATTTTTACGT+AGG | - | chr5_1:27943909-27943928 | Msa0726660:intron | 30.0% |
| AACCATTGATGGAACATTAA+CGG | - | chr5_1:27943958-27943977 | Msa0726660:intron | 30.0% | |
| CATAAACCATATACCTGAAA+AGG | + | chr5_1:27944728-27944747 | None:intergenic | 30.0% | |
| !!! | CTTTTCAGGTATATGGTTTA+TGG | - | chr5_1:27944726-27944745 | Msa0726660:intron | 30.0% |
| GTTAAACACATGAAATCTCT+CGG | - | chr5_1:27945118-27945137 | Msa0726660:intron | 30.0% | |
| ATCCATTCTTTAGGTATACA+GGG | + | chr5_1:27945550-27945569 | None:intergenic | 30.0% | |
| AATCCATTCTTTAGGTATAC+AGG | + | chr5_1:27945551-27945570 | None:intergenic | 30.0% | |
| ATACTGTCAATCCATTCTTT+AGG | + | chr5_1:27945559-27945578 | None:intergenic | 30.0% | |
| !! | AGAAATAGGTTTTGGTAGTT+CGG | - | chr5_1:27945875-27945894 | Msa0726660:intron | 30.0% |
| AATGGTCATACACATAAAAC+AGG | + | chr5_1:27946153-27946172 | None:intergenic | 30.0% | |
| AAAAAAGAGACAGATATGCA+AGG | + | chr5_1:27946211-27946230 | None:intergenic | 30.0% | |
| GCAAGAAACCATAAAAGAGA+AGG | - | chr5_1:27940986-27941005 | Msa0726660:three_prime_UTR | 35.0% | |
| TTATTCAAAGCAGCAGAAGA+AGG | - | chr5_1:27941011-27941030 | Msa0726660:three_prime_UTR | 35.0% | |
| !! | GTTTCTAAGAGAAAGTGCTT+TGG | + | chr5_1:27941078-27941097 | None:intergenic | 35.0% |
| ! | AAAAGAAAGAGACCCTTTTG+AGG | + | chr5_1:27941161-27941180 | None:intergenic | 35.0% |
| CCTAAGTAAAACCCCAATTT+AGG | + | chr5_1:27941232-27941251 | None:intergenic | 35.0% | |
| ! | CCTAAATTGGGGTTTTACTT+AGG | - | chr5_1:27941229-27941248 | Msa0726660:CDS | 35.0% |
| !! | TTGAAGCTTTGTTTATCAGG+TGG | - | chr5_1:27941343-27941362 | Msa0726660:intron | 35.0% |
| TGAATACTTGTGAGACTGTT+TGG | - | chr5_1:27941576-27941595 | Msa0726660:intron | 35.0% | |
| GAATACTTGTGAGACTGTTT+GGG | - | chr5_1:27941577-27941596 | Msa0726660:intron | 35.0% | |
| CAAAATAAGCCCAAACCAAA+CGG | - | chr5_1:27941881-27941900 | Msa0726660:intron | 35.0% | |
| AAAATAAGCCCAAACCAAAC+GGG | - | chr5_1:27941882-27941901 | Msa0726660:intron | 35.0% | |
| ! | TTTAGGGTATGTTTGGATTG+AGG | - | chr5_1:27942007-27942026 | Msa0726660:intron | 35.0% |
| TTAGGGTATGTTTGGATTGA+GGG | - | chr5_1:27942008-27942027 | Msa0726660:intron | 35.0% | |
| ! | TATGTTTGGATTGAGGGTTT+TGG | - | chr5_1:27942014-27942033 | Msa0726660:intron | 35.0% |
| CTAAAGATATGTCTGGAAGT+AGG | + | chr5_1:27942180-27942199 | None:intergenic | 35.0% | |
| CTACTTCCAGACATATCTTT+AGG | - | chr5_1:27942178-27942197 | Msa0726660:intron | 35.0% | |
| ATAGCTTATGGACATGTCAT+CGG | + | chr5_1:27942288-27942307 | None:intergenic | 35.0% | |
| TAATTGTACTGTGAGCTAAG+TGG | - | chr5_1:27942448-27942467 | Msa0726660:intron | 35.0% | |
| ! | GTTAACTTTAACTTAAGCGC+TGG | - | chr5_1:27942516-27942535 | Msa0726660:intron | 35.0% |
| CAGCATCACTCATCTAATTA+TGG | + | chr5_1:27942587-27942606 | None:intergenic | 35.0% | |
| ACAGCATCCATAGTTCTTAA+AGG | - | chr5_1:27942811-27942830 | Msa0726660:intron | 35.0% | |
| CTATGTATTTGTGTCATGTC+AGG | + | chr5_1:27942936-27942955 | None:intergenic | 35.0% | |
| AGTAGTAACTCTACTGTGAA+GGG | + | chr5_1:27943102-27943121 | None:intergenic | 35.0% | |
| CAGAATGGTACTTAGTTAGT+TGG | + | chr5_1:27943208-27943227 | None:intergenic | 35.0% | |
| ACACTAACACTTCAGATTGA+AGG | + | chr5_1:27943396-27943415 | None:intergenic | 35.0% | |
| AAGAATAAGAACGTTCAGGA+TGG | + | chr5_1:27943443-27943462 | None:intergenic | 35.0% | |
| ACGTAGGAGTAAACTAGTAA+AGG | - | chr5_1:27943925-27943944 | Msa0726660:intron | 35.0% | |
| CGTAGGAGTAAACTAGTAAA+GGG | - | chr5_1:27943926-27943945 | Msa0726660:intron | 35.0% | |
| CTCTTTGTTAACACTTAGCA+TGG | - | chr5_1:27944194-27944213 | Msa0726660:intron | 35.0% | |
| TATTTAGTTGCACAGTGCTA+AGG | - | chr5_1:27944245-27944264 | Msa0726660:intron | 35.0% | |
| ATTTAGTTGCACAGTGCTAA+GGG | - | chr5_1:27944246-27944265 | Msa0726660:intron | 35.0% | |
| !!! | CTTTTTTTAGTCACTTGCAC+TGG | - | chr5_1:27944308-27944327 | Msa0726660:intron | 35.0% |
| TAGCAAGGTGGAAATAAACT+AGG | + | chr5_1:27944395-27944414 | None:intergenic | 35.0% | |
| !! | GATCGTCATTTTGTTTAGCA+AGG | + | chr5_1:27944410-27944429 | None:intergenic | 35.0% |
| TTAGATCCTTTATGACCTAG+TGG | - | chr5_1:27944537-27944556 | Msa0726660:intron | 35.0% | |
| ATACCTGAAAAGGTTTAGCT+CGG | + | chr5_1:27944718-27944737 | None:intergenic | 35.0% | |
| !!! | GCTAAACCTTTTCAGGTATA+TGG | - | chr5_1:27944719-27944738 | Msa0726660:intron | 35.0% |
| ! | ATCTTTTTAACGAGACGTTG+TGG | + | chr5_1:27944815-27944834 | None:intergenic | 35.0% |
| ! | TGCATTTGGGATTACTGAAA+GGG | + | chr5_1:27944897-27944916 | None:intergenic | 35.0% |
| ! | ACCAATTTTTCCATCGTTGT+TGG | - | chr5_1:27944924-27944943 | Msa0726660:intron | 35.0% |
| ! | CCAATTTTTCCATCGTTGTT+GGG | - | chr5_1:27944925-27944944 | Msa0726660:intron | 35.0% |
| ! | CAATTTTTCCATCGTTGTTG+GGG | - | chr5_1:27944926-27944945 | Msa0726660:intron | 35.0% |
| ! | AATTTTTCCATCGTTGTTGG+GGG | - | chr5_1:27944927-27944946 | Msa0726660:intron | 35.0% |
| CGATTAAAAAAGGAACCGAT+CGG | + | chr5_1:27945161-27945180 | None:intergenic | 35.0% | |
| !!! | GTCAGTTTTTTCCTAAGATG+TGG | - | chr5_1:27945208-27945227 | Msa0726660:intron | 35.0% |
| ! | ATTTTGTTCCGAATGCAATC+TGG | - | chr5_1:27945242-27945261 | Msa0726660:intron | 35.0% |
| ! | CATAATTTTACATGGGAGAC+TGG | + | chr5_1:27945273-27945292 | None:intergenic | 35.0% |
| GTATACTAAGCTGTTACAGA+TGG | + | chr5_1:27945318-27945337 | None:intergenic | 35.0% | |
| ! | TTCCATTTTGAATGAGGGTA+AGG | - | chr5_1:27945436-27945455 | Msa0726660:intron | 35.0% |
| ! | TCCATTTTGAATGAGGGTAA+GGG | - | chr5_1:27945437-27945456 | Msa0726660:intron | 35.0% |
| TAAGTGATGAGATGATGTGT+TGG | + | chr5_1:27945486-27945505 | None:intergenic | 35.0% | |
| AATAGAAGAAAGCAGTAAGC+TGG | + | chr5_1:27945635-27945654 | None:intergenic | 35.0% | |
| TAGAAGGTTGAAAATGCAGT+TGG | - | chr5_1:27945705-27945724 | Msa0726660:intron | 35.0% | |
| !!! | AACTTTTAGTTTCAACACCG+AGG | - | chr5_1:27945782-27945801 | Msa0726660:intron | 35.0% |
| !! | CTTTTCTGTGTTTGGTTTAC+AGG | - | chr5_1:27945953-27945972 | Msa0726660:intron | 35.0% |
| GATACTAACACAAGAGAATG+AGG | - | chr5_1:27946108-27946127 | Msa0726660:CDS | 35.0% | |
| GCATTCTTAACCAGTATTTG+AGG | - | chr5_1:27946235-27946254 | Msa0726660:CDS | 35.0% | |
| GTGACAATAACCTCAAATAC+TGG | + | chr5_1:27946248-27946267 | None:intergenic | 35.0% | |
| TTCAGAGGACAATGATTCGA+AGG | + | chr5_1:27941048-27941067 | None:intergenic | 40.0% | |
| TCAGGTACTCTTTCCTCAAA+AGG | - | chr5_1:27941145-27941164 | Msa0726660:CDS | 40.0% | |
| CAGGTACTCTTTCCTCAAAA+GGG | - | chr5_1:27941146-27941165 | Msa0726660:CDS | 40.0% | |
| ! | TTGGTCCCTCACAATTTTCT+CGG | + | chr5_1:27941289-27941308 | None:intergenic | 40.0% |
| TCTGCTGAGGTGATAAATAG+TGG | - | chr5_1:27941392-27941411 | Msa0726660:intron | 40.0% | |
| AAATAAGCCCAAACCAAACG+GGG | - | chr5_1:27941883-27941902 | Msa0726660:intron | 40.0% | |
| GTATAAACTATGACCCCGTT+TGG | + | chr5_1:27941899-27941918 | None:intergenic | 40.0% | |
| !!! | TTTGGATTGAGGGTTTTGGA+GGG | - | chr5_1:27942018-27942037 | Msa0726660:intron | 40.0% |
| ! | TATGTCTGGAAGTAGGGTTT+TGG | + | chr5_1:27942173-27942192 | None:intergenic | 40.0% |
| ATAGGCCCTAAAGATATGTC+TGG | + | chr5_1:27942187-27942206 | None:intergenic | 40.0% | |
| AGAAGATGCTGCTAGACATT+AGG | + | chr5_1:27942413-27942432 | None:intergenic | 40.0% | |
| GACAATGCAACACGGAAATA+TGG | + | chr5_1:27942708-27942727 | None:intergenic | 40.0% | |
| ACGACAAAGACAATGCAACA+CGG | + | chr5_1:27942716-27942735 | None:intergenic | 40.0% | |
| GTAGAAATGAAGGACTGACA+TGG | - | chr5_1:27942903-27942922 | Msa0726660:intron | 40.0% | |
| ATTTGTAACTGTTAGGACCC+AGG | - | chr5_1:27942958-27942977 | Msa0726660:intron | 40.0% | |
| TTTGTAACTGTTAGGACCCA+GGG | - | chr5_1:27942959-27942978 | Msa0726660:intron | 40.0% | |
| ACCCAGGGAATTGAATTCAA+AGG | - | chr5_1:27942974-27942993 | Msa0726660:intron | 40.0% | |
| CCCTTTGAATTCAATTCCCT+GGG | + | chr5_1:27942978-27942997 | None:intergenic | 40.0% | |
| CCCAGGGAATTGAATTCAAA+GGG | - | chr5_1:27942975-27942994 | Msa0726660:intron | 40.0% | |
| TCCCTTTGAATTCAATTCCC+TGG | + | chr5_1:27942979-27942998 | None:intergenic | 40.0% | |
| GAAAGAAATCTCTCCTCCAA+GGG | - | chr5_1:27943072-27943091 | Msa0726660:intron | 40.0% | |
| GTAGTAACTCTACTGTGAAG+GGG | + | chr5_1:27943101-27943120 | None:intergenic | 40.0% | |
| GAGTAGTAACTCTACTGTGA+AGG | + | chr5_1:27943103-27943122 | None:intergenic | 40.0% | |
| TGTTGGACATTGACACATGT+CGG | - | chr5_1:27943365-27943384 | Msa0726660:CDS | 40.0% | |
| CAAATCACAGCACTCATTAG+AGG | + | chr5_1:27943853-27943872 | None:intergenic | 40.0% | |
| GGTAGCATTACAACCATTGA+TGG | - | chr5_1:27943947-27943966 | Msa0726660:intron | 40.0% | |
| TGCCGTTAATGTTCCATCAA+TGG | + | chr5_1:27943963-27943982 | None:intergenic | 40.0% | |
| ATTGATGGAACATTAACGGC+AGG | - | chr5_1:27943962-27943981 | Msa0726660:intron | 40.0% | |
| TTGATGGAACATTAACGGCA+GGG | - | chr5_1:27943963-27943982 | Msa0726660:intron | 40.0% | |
| AGGTGGAAATAAACTAGGAG+AGG | + | chr5_1:27944390-27944409 | None:intergenic | 40.0% | |
| !! | CGTCATTTTGTTTAGCAAGG+TGG | + | chr5_1:27944407-27944426 | None:intergenic | 40.0% |
| GGAATAGATGGTTCATGACA+TGG | - | chr5_1:27944512-27944531 | Msa0726660:intron | 40.0% | |
| TCAAGACCACTAGGTCATAA+AGG | + | chr5_1:27944546-27944565 | None:intergenic | 40.0% | |
| GTATTGAACTCAAGACCACT+AGG | + | chr5_1:27944555-27944574 | None:intergenic | 40.0% | |
| CTCTTAGAACTTAGAAGCCT+GGG | - | chr5_1:27944847-27944866 | Msa0726660:intron | 40.0% | |
| GATACTAAAGAGGGATGAAC+TGG | + | chr5_1:27944874-27944893 | None:intergenic | 40.0% | |
| CTGAAAGGGGATACTAAAGA+GGG | + | chr5_1:27944883-27944902 | None:intergenic | 40.0% | |
| ACTGAAAGGGGATACTAAAG+AGG | + | chr5_1:27944884-27944903 | None:intergenic | 40.0% | |
| ! | GCATTTGGGATTACTGAAAG+GGG | + | chr5_1:27944896-27944915 | None:intergenic | 40.0% |
| ! | CTGCATTTGGGATTACTGAA+AGG | + | chr5_1:27944898-27944917 | None:intergenic | 40.0% |
| CCCAACAACGATGGAAAAAT+TGG | + | chr5_1:27944928-27944947 | None:intergenic | 40.0% | |
| ACTAACGATTTGACCATGAC+TGG | + | chr5_1:27945082-27945101 | None:intergenic | 40.0% | |
| ! | GTTAGTTTGAGTCAGCAATC+AGG | - | chr5_1:27945096-27945115 | Msa0726660:intron | 40.0% |
| ACCCTTACCCTCATTCAAAA+TGG | + | chr5_1:27945441-27945460 | None:intergenic | 40.0% | |
| ! | TTTTGAATGAGGGTAAGGGT+AGG | - | chr5_1:27945441-27945460 | Msa0726660:intron | 40.0% |
| CTCCCTGTATACCTAAAGAA+TGG | - | chr5_1:27945545-27945564 | Msa0726660:intron | 40.0% | |
| ! | AGTAAGCTGGAGTCTTGTAA+AGG | + | chr5_1:27945622-27945641 | None:intergenic | 40.0% |
| !! | GGTTTTGGTAGTTCGGTTAT+TGG | - | chr5_1:27945882-27945901 | Msa0726660:intron | 40.0% |
| AGGTAGCACTCCTTCTTATA+AGG | - | chr5_1:27945973-27945992 | Msa0726660:intron | 40.0% | |
| GTGTTAGTATCATTCGAGCA+TGG | + | chr5_1:27946099-27946118 | None:intergenic | 40.0% | |
| ACACAAGAGAATGAGGAACA+AGG | - | chr5_1:27946115-27946134 | Msa0726660:CDS | 40.0% | |
| ! | TGAGGAACAAGGTTTTGCTT+AGG | - | chr5_1:27946126-27946145 | Msa0726660:CDS | 40.0% |
| !! | TGACCATTGAGAGCATTCAA+TGG | - | chr5_1:27946165-27946184 | Msa0726660:CDS | 40.0% |
| AAGCCATTGAATGCTCTCAA+TGG | + | chr5_1:27946171-27946190 | None:intergenic | 40.0% | |
| AAGAGACAGATATGCAAGGT+TGG | + | chr5_1:27946207-27946226 | None:intergenic | 40.0% | |
| !! | TGCTTTGGAGAGTGATTCAG+AGG | + | chr5_1:27941063-27941082 | None:intergenic | 45.0% |
| !! | CTTCATGTTGCCGCTTCTTT+TGG | - | chr5_1:27941116-27941135 | Msa0726660:exon | 45.0% |
| CTGAGAGTGACCAAAAGAAG+CGG | + | chr5_1:27941129-27941148 | None:intergenic | 45.0% | |
| ATTGGGCCGAGAAAATTGTG+AGG | - | chr5_1:27941280-27941299 | Msa0726660:intron | 45.0% | |
| TTGGGCCGAGAAAATTGTGA+GGG | - | chr5_1:27941281-27941300 | Msa0726660:intron | 45.0% | |
| ! | ATAGTGGTGATGAAGAAGGG+TGG | - | chr5_1:27941408-27941427 | Msa0726660:intron | 45.0% |
| ! | TAGTGGTGATGAAGAAGGGT+GGG | - | chr5_1:27941409-27941428 | Msa0726660:intron | 45.0% |
| TTCATTCTGCTGCCAGCATT+GGG | - | chr5_1:27941438-27941457 | Msa0726660:intron | 45.0% | |
| AATCTCCGAATTCCCAATGC+TGG | + | chr5_1:27941453-27941472 | None:intergenic | 45.0% | |
| CATTGGGAATTCGGAGATTC+TGG | - | chr5_1:27941454-27941473 | Msa0726660:intron | 45.0% | |
| !! | CTGGAGGCTTTGTTGAACAA+AGG | - | chr5_1:27941473-27941492 | Msa0726660:intron | 45.0% |
| ! | ACTATGACCCCGTTTGGTTT+GGG | + | chr5_1:27941893-27941912 | None:intergenic | 45.0% |
| AACTATGACCCCGTTTGGTT+TGG | + | chr5_1:27941894-27941913 | None:intergenic | 45.0% | |
| !! | GTTTGGATTGAGGGTTTTGG+AGG | - | chr5_1:27942017-27942036 | Msa0726660:intron | 45.0% |
| !!! | TTGGATTGAGGGTTTTGGAG+GGG | - | chr5_1:27942019-27942038 | Msa0726660:intron | 45.0% |
| !!! | TCTGGAAGTAGGGTTTTGGA+GGG | + | chr5_1:27942169-27942188 | None:intergenic | 45.0% |
| CTGTGAGCTAAGTGGATAAG+TGG | - | chr5_1:27942456-27942475 | Msa0726660:intron | 45.0% | |
| GAGAGAGAGAGAGAGAGAAT+AGG | - | chr5_1:27943050-27943069 | Msa0726660:intron | 45.0% | |
| GGAAAGAAATCTCTCCTCCA+AGG | - | chr5_1:27943071-27943090 | Msa0726660:intron | 45.0% | |
| CACAAGTGTCAGTGTCATGT+CGG | - | chr5_1:27943342-27943361 | Msa0726660:intron | 45.0% | |
| ! | TTTGCTGGCTGCATAGTGTA+AGG | + | chr5_1:27943517-27943536 | None:intergenic | 45.0% |
| TTACACTATGCAGCCAGCAA+AGG | - | chr5_1:27943516-27943535 | Msa0726660:intron | 45.0% | |
| AATCTTCATCCGACCTTTGC+TGG | + | chr5_1:27943532-27943551 | None:intergenic | 45.0% | |
| ! | GTTGATGCTGTTGATAGAGC+TGG | - | chr5_1:27943820-27943839 | Msa0726660:intron | 45.0% |
| CAGCACTCATTAGAGGAGTT+TGG | + | chr5_1:27943846-27943865 | None:intergenic | 45.0% | |
| AAACTGCACTTTCCCCTCAA+AGG | - | chr5_1:27944069-27944088 | Msa0726660:intron | 45.0% | |
| AATGAGCAGTACGCCTTTGA+GGG | + | chr5_1:27944085-27944104 | None:intergenic | 45.0% | |
| TAATGAGCAGTACGCCTTTG+AGG | + | chr5_1:27944086-27944105 | None:intergenic | 45.0% | |
| ! | AAAGGCGTACTGCTCATTAG+TGG | - | chr5_1:27944087-27944106 | Msa0726660:intron | 45.0% |
| ! | GCTCGGTGAAGACATATGTA+TGG | + | chr5_1:27944701-27944720 | None:intergenic | 45.0% |
| ! | TCACCGAGCTAAACCTTTTC+AGG | - | chr5_1:27944712-27944731 | Msa0726660:intron | 45.0% |
| GCTCTTAGAACTTAGAAGCC+TGG | - | chr5_1:27944846-27944865 | Msa0726660:intron | 45.0% | |
| ATTGCGGAATTTCAGAGTGG+CGG | - | chr5_1:27945009-27945028 | Msa0726660:intron | 45.0% | |
| TCGAGTGCATACCACATCTT+AGG | + | chr5_1:27945222-27945241 | None:intergenic | 45.0% | |
| ! | ATTTTACATGGGAGACTGGC+CGG | + | chr5_1:27945269-27945288 | None:intergenic | 45.0% |
| TTAGGTATACAGGGAGAACG+AGG | + | chr5_1:27945541-27945560 | None:intergenic | 45.0% | |
| GCACTCCTTCTTATAAGGCA+TGG | - | chr5_1:27945978-27945997 | Msa0726660:intron | 45.0% | |
| CAGCTCCATGCCTTATAAGA+AGG | + | chr5_1:27945986-27946005 | None:intergenic | 45.0% | |
| TATAAGGCATGGAGCTGATG+TGG | - | chr5_1:27945989-27946008 | Msa0726660:intron | 45.0% | |
| GTATCATTCGAGCATGGTCT+TGG | + | chr5_1:27946093-27946112 | None:intergenic | 45.0% | |
| ! | GACAGATATGCAAGGTTGGT+AGG | + | chr5_1:27946203-27946222 | None:intergenic | 45.0% |
| ! | CGCTTCTTTTGGTCACTCTC+AGG | - | chr5_1:27941127-27941146 | Msa0726660:CDS | 50.0% |
| GTCTTGTGATGCATCTGCTG+AGG | - | chr5_1:27941379-27941398 | Msa0726660:intron | 50.0% | |
| ATGCTGGCAGCAGAATGAAG+TGG | + | chr5_1:27941437-27941456 | None:intergenic | 50.0% | |
| CTTCATTCTGCTGCCAGCAT+TGG | - | chr5_1:27941437-27941456 | Msa0726660:intron | 50.0% | |
| ! | TGCTGCCAGCATTGGGAATT+CGG | - | chr5_1:27941445-27941464 | Msa0726660:intron | 50.0% |
| TGGGAATTCGGAGATTCTGG+AGG | - | chr5_1:27941457-27941476 | Msa0726660:intron | 50.0% | |
| CTTGTGAGACTGTTTGGGAG+AGG | - | chr5_1:27941582-27941601 | Msa0726660:intron | 50.0% | |
| !!! | ATTGAGGGTTTTGGAGGGGA+GGG | - | chr5_1:27942023-27942042 | Msa0726660:intron | 50.0% |
| !! | GTCTGGAAGTAGGGTTTTGG+AGG | + | chr5_1:27942170-27942189 | None:intergenic | 50.0% |
| TACTGTGAAGGGGAAACCCT+TGG | + | chr5_1:27943091-27943110 | None:intergenic | 50.0% | |
| TGTCAGTGTCATGTCGGTGT+TGG | - | chr5_1:27943348-27943367 | Msa0726660:CDS | 50.0% | |
| ACTATGCAGCCAGCAAAGGT+CGG | - | chr5_1:27943520-27943539 | Msa0726660:intron | 50.0% | |
| TTGGTTCCACTCCGTTGCAT+CGG | - | chr5_1:27943740-27943759 | Msa0726660:intron | 50.0% | |
| ATGAGCAGTACGCCTTTGAG+GGG | + | chr5_1:27944084-27944103 | None:intergenic | 50.0% | |
| !! | TTTTAAGTCACGGGGCAGCA+AGG | + | chr5_1:27944584-27944603 | None:intergenic | 50.0% |
| TGCGTTTGTGCTCCATGCTT+CGG | - | chr5_1:27944633-27944652 | Msa0726660:intron | 50.0% | |
| AGTGGCGTGATCGACAACAT+AGG | + | chr5_1:27944979-27944998 | None:intergenic | 50.0% | |
| ! | GCCACTTTAGCATGCGATTG+CGG | - | chr5_1:27944993-27945012 | Msa0726660:intron | 50.0% |
| TCCGCAATCGCATGCTAAAG+TGG | + | chr5_1:27944997-27945016 | None:intergenic | 50.0% | |
| GCGATTGCGGAATTTCAGAG+TGG | - | chr5_1:27945006-27945025 | Msa0726660:intron | 50.0% | |
| AACCGATCGGCTAGAACATG+GGG | + | chr5_1:27945148-27945167 | None:intergenic | 50.0% | |
| GAACCGATCGGCTAGAACAT+GGG | + | chr5_1:27945149-27945168 | None:intergenic | 50.0% | |
| !! | TTTTACATGGGAGACTGGCC+GGG | + | chr5_1:27945268-27945287 | None:intergenic | 50.0% |
| AGTTTCAACACCGAGGTGCA+AGG | - | chr5_1:27945789-27945808 | Msa0726660:intron | 50.0% | |
| GTTTCAACACCGAGGTGCAA+GGG | - | chr5_1:27945790-27945809 | Msa0726660:intron | 50.0% | |
| TGATGTGGATGTGGAGGACA+AGG | - | chr5_1:27946004-27946023 | Msa0726660:intron | 50.0% | |
| TGGATGTGGAGGACAAGGAA+GGG | - | chr5_1:27946009-27946028 | Msa0726660:intron | 50.0% | |
| ! | AAGGAAGGGTACACAGTGCT+TGG | - | chr5_1:27946023-27946042 | Msa0726660:intron | 50.0% |
| !!! | GATTGAGGGTTTTGGAGGGG+AGG | - | chr5_1:27942022-27942041 | Msa0726660:intron | 55.0% |
| TGTGAAGGGGAAACCCTTGG+AGG | + | chr5_1:27943088-27943107 | None:intergenic | 55.0% | |
| TGGTTCCACTCCGTTGCATC+GGG | - | chr5_1:27943741-27943760 | Msa0726660:intron | 55.0% | |
| GCGTTTGTGCTCCATGCTTC+GGG | - | chr5_1:27944634-27944653 | Msa0726660:intron | 55.0% | |
| AAGAGGGATGAACTGGTCCC+AGG | + | chr5_1:27944867-27944886 | None:intergenic | 55.0% | |
| GCAGACCTACTCATCAGTCG+AGG | - | chr5_1:27944949-27944968 | Msa0726660:intron | 55.0% | |
| ACCCCCATGTTCTAGCCGAT+CGG | - | chr5_1:27945143-27945162 | Msa0726660:intron | 55.0% | |
| ACCGATCGGCTAGAACATGG+GGG | + | chr5_1:27945147-27945166 | None:intergenic | 55.0% | |
| GGAACCGATCGGCTAGAACA+TGG | + | chr5_1:27945150-27945169 | None:intergenic | 55.0% | |
| GTTCCGAATGCAATCTGGCC+CGG | - | chr5_1:27945247-27945266 | Msa0726660:intron | 55.0% | |
| TTCCTTTGGCCCTTGCACCT+CGG | + | chr5_1:27945802-27945821 | None:intergenic | 55.0% | |
| GCATGGAGCTGATGTGGATG+TGG | - | chr5_1:27945995-27946014 | Msa0726660:intron | 55.0% | |
| TGGAGCTGATGTGGATGTGG+AGG | - | chr5_1:27945998-27946017 | Msa0726660:intron | 55.0% | |
| GTGGATGTGGAGGACAAGGA+AGG | - | chr5_1:27946008-27946027 | Msa0726660:intron | 55.0% | |
| GTGCTAGCTGCCCGATGCAA+CGG | + | chr5_1:27943754-27943773 | None:intergenic | 60.0% | |
| TTGCATCGGGCAGCTAGCAC+TGG | - | chr5_1:27943754-27943773 | Msa0726660:intron | 60.0% | |
| TGCATCGGGCAGCTAGCACT+GGG | - | chr5_1:27943755-27943774 | Msa0726660:intron | 60.0% | |
| CTCCATGCTTCGGGTGTGTG+TGG | - | chr5_1:27944643-27944662 | Msa0726660:intron | 60.0% | |
| CTCCACACACACCCGAAGCA+TGG | + | chr5_1:27944648-27944667 | None:intergenic | 60.0% | |
| AGGTCTGCCCCCAACAACGA+TGG | + | chr5_1:27944937-27944956 | None:intergenic | 60.0% | |
| GCGCACCTCGACTGATGAGT+AGG | + | chr5_1:27944957-27944976 | None:intergenic | 60.0% | |
| GGCATCCTCTGCGACGAGTT+CGG | - | chr5_1:27945030-27945049 | Msa0726660:intron | 60.0% | |
| ACTGGCATGCCTCCTGAGTG+CGG | + | chr5_1:27945064-27945083 | None:intergenic | 60.0% | |
| ! | CTCAGGAGGCATGCCAGTCA+TGG | - | chr5_1:27945066-27945085 | Msa0726660:intron | 60.0% |
| TGGCCGGGCCAGATTGCATT+CGG | + | chr5_1:27945253-27945272 | None:intergenic | 60.0% | |
| AGCTGCCCGATGCAACGGAG+TGG | + | chr5_1:27943749-27943768 | None:intergenic | 65.0% | |
| CACCGAGGTGCAAGGGCCAA+AGG | - | chr5_1:27945797-27945816 | Msa0726660:intron | 65.0% | |
| GTCGGCCGAACTCGTCGCAG+AGG | + | chr5_1:27945038-27945057 | None:intergenic | 70.0% | |
| GCCTCCTGAGTGCGGCTCGT+CGG | + | chr5_1:27945056-27945075 | None:intergenic | 70.0% | |
| TCGGCCGACGAGCCGCACTC+AGG | - | chr5_1:27945049-27945068 | Msa0726660:intron | 75.0% | |
| GCCGACGAGCCGCACTCAGG+AGG | - | chr5_1:27945052-27945071 | Msa0726660:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 27940924 | 27946307 | 27940924 | ID=Msa0726660;Name=Msa0726660 |
| chr5_1 | mRNA | 27940924 | 27946307 | 27940924 | ID=Msa0726660-mRNA-1;Parent=Msa0726660;Name=Msa0726660-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.66|0.75|1|0.66|0.75|4|198|216 |
| chr5_1 | exon | 27940924 | 27941256 | 27940924 | ID=Msa0726660-mRNA-1:exon:9754;Parent=Msa0726660-mRNA-1 |
| chr5_1 | exon | 27943346 | 27943492 | 27943346 | ID=Msa0726660-mRNA-1:exon:9753;Parent=Msa0726660-mRNA-1 |
| chr5_1 | exon | 27943632 | 27943756 | 27943632 | ID=Msa0726660-mRNA-1:exon:9752;Parent=Msa0726660-mRNA-1 |
| chr5_1 | exon | 27946064 | 27946307 | 27946064 | ID=Msa0726660-mRNA-1:exon:9751;Parent=Msa0726660-mRNA-1 |
| chr5_1 | CDS | 27946064 | 27946307 | 27946064 | ID=Msa0726660-mRNA-1:cds;Parent=Msa0726660-mRNA-1 |
| chr5_1 | CDS | 27943632 | 27943756 | 27943632 | ID=Msa0726660-mRNA-1:cds;Parent=Msa0726660-mRNA-1 |
| chr5_1 | CDS | 27943346 | 27943492 | 27943346 | ID=Msa0726660-mRNA-1:cds;Parent=Msa0726660-mRNA-1 |
| chr5_1 | CDS | 27941122 | 27941256 | 27941122 | ID=Msa0726660-mRNA-1:cds;Parent=Msa0726660-mRNA-1 |
| chr5_1 | three_prime_UTR | 27940924 | 27941121 | 27940924 | ID=Msa0726660-mRNA-1:three_prime_utr;Parent=Msa0726660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
