AlfalfaGEDB | Msa1286510

M. sativa cultivar zhongmu-4 / Msa1286510

KEGG: -
GO: -
PFAM: PF04063.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1286510	PNY16985.1	84.524	336	11	1	1	295	1	336	0.0	558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1286510	sp\|Q8C3I8\|HGH1_MOUSE	29.153	295	188	10	5	287	70	355	1.42e-23	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1286510	A0A2K3PNX4	84.524	336	11	1	1	295	1	336	0.0	558

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004540	Msa1286510	0.806884	6.621678e-50	-8.615850e-47
Msa0008840	Msa1286510	0.803440	3.482710e-49	-8.615850e-47
Msa0018620	Msa1286510	0.805832	1.103280e-49	-8.615850e-47
Msa0026660	Msa1286510	0.831819	1.345064e-55	-8.615850e-47
Msa0033880	Msa1286510	0.826121	3.228058e-54	-8.615850e-47
Msa0047280	Msa1286510	0.800057	1.722761e-48	-8.615850e-47
Msa0057710	Msa1286510	0.833410	5.420562e-56	-8.615850e-47
Msa0061970	Msa1286510	0.823974	1.037453e-53	-8.615850e-47
Msa0065010	Msa1286510	0.810200	1.297389e-50	-8.615850e-47
Msa0074320	Msa1286510	0.828229	1.009722e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1286510	MtrunA17_Chr8g0361821	83.976	337	11	2	1	295	1	336	0.0	557

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1286510	AT1G14300.1	66.071	336	73	1	1	295	1	336	1.12e-156	441
Msa1286510	AT1G14300.2	59.626	374	72	2	1	295	1	374	1.03e-149	424

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Find 93 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGTGACACAACACTC+AGG	0.651559	8_3:+34477871	None:intergenic
AACAGTTCATTGAGAAAGAA+AGG	0.392448	8_3:-34476675	Msa1286510:CDS
AACATCACAAAGCAGCGGGC+AGG	0.468910	8_3:-34476762	Msa1286510:CDS
AATACTTGAGTACGAATTTC+TGG	0.204303	8_3:+34474872	None:intergenic
AATCTCACTCAACTTGATGC+TGG	0.559771	8_3:-34477829	Msa1286510:CDS
ACAAAAGCACACCTGAAGCA+AGG	0.614328	8_3:+34477798	None:intergenic
ACAGGCAATAGAGAAATCAT+CGG	0.639823	8_3:+34472700	None:intergenic
ACAGTTCATTGAGAAAGAAA+GGG	0.506298	8_3:-34476674	Msa1286510:CDS
ACATCACAAAGCAGCGGGCA+GGG	0.590651	8_3:-34476761	Msa1286510:CDS
AGAAATCATCGGAAAGACGG+TGG	0.625575	8_3:+34472711	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATATGTTCAATTGCTCAT+AGG	+	chr8_3:34472727-34472746	None:intergenic	30.0%
CTATGAGCAATTGAACATAT+AGG	-	chr8_3:34472725-34472744	Msa1286510:three_prime_UTR	30.0%
TCGTATCAATCCAAACAAAA+AGG	-	chr8_3:34472796-34472815	Msa1286510:three_prime_UTR	30.0%
CAGTTTAAAAACAACTGTGA+AGG	+	chr8_3:34472972-34472991	None:intergenic	30.0%
ACAGATAAGCTCAAATAAGT+CGG	+	chr8_3:34473324-34473343	None:intergenic	30.0%
TGTTTCATGAGTTATCTTAG+AGG	+	chr8_3:34473436-34473455	None:intergenic	30.0%
AGCTTATACGAGAACAATTT+AGG	-	chr8_3:34473462-34473481	Msa1286510:intron	30.0%
GCTTATACGAGAACAATTTA+GGG	-	chr8_3:34473463-34473482	Msa1286510:intron	30.0%
AAAAATATGCCAAACCAAAC+AGG	+	chr8_3:34473489-34473508	None:intergenic	30.0%
GTTATTTGGTTGAGTATAGA+TGG	-	chr8_3:34473834-34473853	Msa1286510:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	34472703	34479307	34472703	ID=Msa1286510;Name=Msa1286510
chr8_3	mRNA	34472703	34479307	34472703	ID=Msa1286510-mRNA-1;Parent=Msa1286510;Name=Msa1286510-mRNA-1;_AED=0.18;_eAED=0.18;_QI=142\|0.87\|1\|1\|0.87\|0.77\|9\|301\|295
chr8_3	exon	34472703	34473054	34472703	ID=Msa1286510-mRNA-1:exon:10310;Parent=Msa1286510-mRNA-1
chr8_3	exon	34473178	34473291	34473178	ID=Msa1286510-mRNA-1:exon:10309;Parent=Msa1286510-mRNA-1
chr8_3	exon	34474844	34474975	34474844	ID=Msa1286510-mRNA-1:exon:10308;Parent=Msa1286510-mRNA-1
chr8_3	exon	34475680	34475793	34475680	ID=Msa1286510-mRNA-1:exon:10307;Parent=Msa1286510-mRNA-1
chr8_3	exon	34476674	34476819	34476674	ID=Msa1286510-mRNA-1:exon:10306;Parent=Msa1286510-mRNA-1
chr8_3	exon	34477216	34477294	34477216	ID=Msa1286510-mRNA-1:exon:10305;Parent=Msa1286510-mRNA-1
chr8_3	exon	34477810	34478007	34477810	ID=Msa1286510-mRNA-1:exon:10304;Parent=Msa1286510-mRNA-1
chr8_3	exon	34479092	34479263	34479092	ID=Msa1286510-mRNA-1:exon:10303;Parent=Msa1286510-mRNA-1
chr8_3	exon	34479284	34479307	34479284	ID=Msa1286510-mRNA-1:exon:10302;Parent=Msa1286510-mRNA-1
chr8_3	five_prime_UTR	34479284	34479307	34479284	ID=Msa1286510-mRNA-1:five_prime_utr;Parent=Msa1286510-mRNA-1
chr8_3	five_prime_UTR	34479146	34479263	34479146	ID=Msa1286510-mRNA-1:five_prime_utr;Parent=Msa1286510-mRNA-1
chr8_3	CDS	34479092	34479145	34479092	ID=Msa1286510-mRNA-1:cds;Parent=Msa1286510-mRNA-1
chr8_3	CDS	34477810	34478007	34477810	ID=Msa1286510-mRNA-1:cds;Parent=Msa1286510-mRNA-1
chr8_3	CDS	34477216	34477294	34477216	ID=Msa1286510-mRNA-1:cds;Parent=Msa1286510-mRNA-1
chr8_3	CDS	34476674	34476819	34476674	ID=Msa1286510-mRNA-1:cds;Parent=Msa1286510-mRNA-1
chr8_3	CDS	34475680	34475793	34475680	ID=Msa1286510-mRNA-1:cds;Parent=Msa1286510-mRNA-1
chr8_3	CDS	34474844	34474975	34474844	ID=Msa1286510-mRNA-1:cds;Parent=Msa1286510-mRNA-1
chr8_3	CDS	34473178	34473291	34473178	ID=Msa1286510-mRNA-1:cds;Parent=Msa1286510-mRNA-1
chr8_3	CDS	34473004	34473054	34473004	ID=Msa1286510-mRNA-1:cds;Parent=Msa1286510-mRNA-1
chr8_3	three_prime_UTR	34472703	34473003	34472703	ID=Msa1286510-mRNA-1:three_prime_utr;Parent=Msa1286510-mRNA-1

Gene Sequence

>Msa1286510

ATGGCGACGGAGCTTGAAGAACTAGTGAGCTTCTTATCTTCTCCATCACCACAGGAAGTTTCTGAGGCTGCTGCTGAAGCTCTTGTGAACCTTTCGCAAAATTCGAATCTTGCGGAGGAGATGGTTCAGATGAGACTTGTTGAAACAACAATGGATGTTTTGTATAAGCCTGAGTGTTGTGTCACTCGTTTGCTTGTTATGCTTTTGGTTAATCTCACTCAACTTGATGCTGGTACTGATTCCTTGCTTCAGATTGATGATGAGAAGGTGCATGGATTATATGTTATGAAGCTTGTGAGGTCATTTTGTAGAACCACTCATGAGAAGGATGATGATTCTTTTGAACATGTCGGTTCCATACTTGTTAACATCACAAAGCAGCGGGCAGGGAGGGAGCTTCTACTCGACCCAAAACGGGGTCTCTTGAAACAGATAATTAGACAGTTCGATTCAAACAGTTCATTGAGAAAGAAAGGGGTCTCTGGAACTATTCGCAACTGTTGTTTTGAAGCTGAGAATCAGCTACAGAATTTGCTTTTGGTATCTGAATTTCTCTGGCCTGCATTACTTCTTCCGGTAGCCGGAAACAAGATCTATAGTGAGGAGGACAGAAAAAAAATGCCACTTGAACTTGGGACTGCACTATCGATCGAACGTGAACCTGTTAATGATCCAGAAATTCGTACTCAAGTATTGGAAGCCATATACTTGATCCTATTGCAGGAGGCAGGTCGAAGAGCCTTTTGGTCTGTAAATGGGCCTAGAATAGTCCAAGTCGGTTACGAAGATGAGGAAGATCCAAAAGTTATGGGAGCGTATGAGCAACTAGGATCCTTGTTGGTTAACGGCAGCGGTATGGAGGAACCATCCACTGAGACGACAGAGTAG

Protein sequence

>Msa1286510

MATELEELVSFLSSPSPQEVSEAAAEALVNLSQNSNLAEEMVQMRLVETTMDVLYKPECCVTRLLVMLLVNLTQLDAGTDSLLQIDDEKVHGLYVMKLVRSFCRTTHEKDDDSFEHVGSILVNITKQRAGRELLLDPKRGLLKQIIRQFDSNSSLRKKGVSGTIRNCCFEAENQLQNLLLVSEFLWPALLLPVAGNKIYSEEDRKKMPLELGTALSIEREPVNDPEIRTQVLEAIYLILLQEAGRRAFWSVNGPRIVQVGYEDEEDPKVMGAYEQLGSLLVNGSGMEEPSTETTE*