Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491020 | XP_024636066.2 | 92.818 | 181 | 11 | 1 | 1 | 179 | 1 | 181 | 1.41e-115 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491020 | sp|Q9M7X9|CITRX_ARATH | 71.505 | 186 | 43 | 3 | 1 | 179 | 1 | 183 | 1.91e-86 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491020 | A0A396JQ67 | 92.818 | 181 | 11 | 1 | 1 | 179 | 1 | 181 | 6.72e-116 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030380 | Msa0491020 | 0.818656 | 1.749302e-52 | -8.615850e-47 |
| Msa0056520 | Msa0491020 | 0.828326 | 9.565307e-55 | -8.615850e-47 |
| Msa0056690 | Msa0491020 | 0.832113 | 1.137679e-55 | -8.615850e-47 |
| Msa0074320 | Msa0491020 | 0.822440 | 2.366131e-53 | -8.615850e-47 |
| Msa0173740 | Msa0491020 | 0.824465 | 7.955554e-54 | -8.615850e-47 |
| Msa0173820 | Msa0491020 | 0.817534 | 3.138071e-52 | -8.615850e-47 |
| Msa0173830 | Msa0491020 | 0.821779 | 3.366643e-53 | -8.615850e-47 |
| Msa0187690 | Msa0491020 | 0.821864 | 3.217717e-53 | -8.615850e-47 |
| Msa0187930 | Msa0491020 | 0.830801 | 2.393643e-55 | -8.615850e-47 |
| Msa0193120 | Msa0491020 | 0.818356 | 2.046088e-52 | -8.615850e-47 |
| Msa0194540 | Msa0491020 | 0.831151 | 1.963884e-55 | -8.615850e-47 |
| Msa0220720 | Msa0491020 | 0.804777 | 1.835489e-49 | -8.615850e-47 |
| Msa0378080 | Msa0491020 | 0.813742 | 2.193888e-51 | -8.615850e-47 |
| Msa0384430 | Msa0491020 | 0.825033 | 5.842855e-54 | -8.615850e-47 |
| Msa0390060 | Msa0491020 | 0.819015 | 1.449615e-52 | -8.615850e-47 |
| Msa0395960 | Msa0491020 | 0.844761 | 6.188693e-59 | -8.615850e-47 |
| Msa0425940 | Msa0491020 | 0.816841 | 4.491350e-52 | -8.615850e-47 |
| Msa0426020 | Msa0491020 | 0.801267 | 9.759786e-49 | -8.615850e-47 |
| Msa0426160 | Msa0491020 | 0.816118 | 6.520099e-52 | -8.615850e-47 |
| Msa0443500 | Msa0491020 | 0.817577 | 3.068103e-52 | -8.615850e-47 |
| Msa0465790 | Msa0491020 | 0.834620 | 2.697743e-56 | -8.615850e-47 |
| Msa0468160 | Msa0491020 | 0.815106 | 1.095469e-51 | -8.615850e-47 |
| Msa0470180 | Msa0491020 | 0.811131 | 8.162162e-51 | -8.615850e-47 |
| Msa0244780 | Msa0491020 | 0.832951 | 7.051141e-56 | -8.615850e-47 |
| Msa0264570 | Msa0491020 | 0.818251 | 2.160639e-52 | -8.615850e-47 |
| Msa0268130 | Msa0491020 | 0.838614 | 2.590510e-57 | -8.615850e-47 |
| Msa0298990 | Msa0491020 | 0.837279 | 5.707069e-57 | -8.615850e-47 |
| Msa0337240 | Msa0491020 | 0.806828 | 6.804766e-50 | -8.615850e-47 |
| Msa0349060 | Msa0491020 | 0.861085 | 1.314297e-63 | -8.615850e-47 |
| Msa0358170 | Msa0491020 | 0.834655 | 2.643198e-56 | -8.615850e-47 |
| Msa0491020 | Msa0508630 | 0.802957 | 4.383961e-49 | -8.615850e-47 |
| Msa0491020 | Msa0518040 | 0.813796 | 2.134848e-51 | -8.615850e-47 |
| Msa0491020 | Msa0522660 | 0.822613 | 2.156478e-53 | -8.615850e-47 |
| Msa0491020 | Msa0526540 | 0.815512 | 8.901986e-52 | -8.615850e-47 |
| Msa0491020 | Msa0529680 | 0.800074 | 1.708926e-48 | -8.615850e-47 |
| Msa0491020 | Msa0546840 | 0.804393 | 2.206906e-49 | -8.615850e-47 |
| Msa0491020 | Msa0576690 | 0.814599 | 1.419194e-51 | -8.615850e-47 |
| Msa0491020 | Msa0576940 | 0.834468 | 2.946323e-56 | -8.615850e-47 |
| Msa0491020 | Msa0590680 | 0.818178 | 2.244372e-52 | -8.615850e-47 |
| Msa0491020 | Msa0621120 | 0.811512 | 6.746956e-51 | -8.615850e-47 |
| Msa0491020 | Msa0661240 | 0.830849 | 2.329166e-55 | -8.615850e-47 |
| Msa0491020 | Msa0677290 | 0.863011 | 3.373714e-64 | -8.615850e-47 |
| Msa0491020 | Msa0678860 | 0.805674 | 1.190830e-49 | -8.615850e-47 |
| Msa0491020 | Msa0692080 | 0.819017 | 1.448496e-52 | -8.615850e-47 |
| Msa0491020 | Msa0727170 | 0.800484 | 1.410704e-48 | -8.615850e-47 |
| Msa0491020 | Msa0734660 | 0.825616 | 4.254797e-54 | -8.615850e-47 |
| Msa0491020 | Msa0738630 | -0.810041 | 1.403875e-50 | -8.615850e-47 |
| Msa0491020 | Msa0776220 | 0.847482 | 1.124681e-59 | -8.615850e-47 |
| Msa0491020 | Msa0777050 | 0.802931 | 4.437722e-49 | -8.615850e-47 |
| Msa0491020 | Msa0783760 | -0.811606 | 6.436471e-51 | -8.615850e-47 |
| Msa0491020 | Msa0813670 | 0.830080 | 3.592234e-55 | -8.615850e-47 |
| Msa0491020 | Msa0813720 | 0.853169 | 2.853711e-61 | -8.615850e-47 |
| Msa0491020 | Msa0813740 | 0.810226 | 1.280659e-50 | -8.615850e-47 |
| Msa0491020 | Msa0818980 | -0.808419 | 3.125397e-50 | -8.615850e-47 |
| Msa0491020 | Msa0819030 | -0.818885 | 1.551687e-52 | -8.615850e-47 |
| Msa0491020 | Msa0854120 | 0.829514 | 4.932723e-55 | -8.615850e-47 |
| Msa0491020 | Msa0941750 | 0.800294 | 1.542151e-48 | -8.615850e-47 |
| Msa0491020 | Msa1054240 | 0.804058 | 2.592291e-49 | -8.615850e-47 |
| Msa0491020 | Msa1081150 | 0.812814 | 3.508959e-51 | -8.615850e-47 |
| Msa0491020 | Msa1084470 | 0.817639 | 2.971511e-52 | -8.615850e-47 |
| Msa0491020 | Msa1094420 | 0.808967 | 2.387751e-50 | -8.615850e-47 |
| Msa0491020 | Msa1104140 | 0.815341 | 9.716833e-52 | -8.615850e-47 |
| Msa0491020 | Msa1126510 | 0.805954 | 1.040172e-49 | -8.615850e-47 |
| Msa0491020 | Msa1166860 | 0.818702 | 1.707631e-52 | -8.615850e-47 |
| Msa0491020 | Msa1188940 | 0.827466 | 1.540752e-54 | -8.615850e-47 |
| Msa0491020 | Msa1226620 | 0.805159 | 1.527009e-49 | -8.615850e-47 |
| Msa0491020 | Msa1254610 | 0.802466 | 5.537316e-49 | -8.615850e-47 |
| Msa0491020 | Msa1284520 | 0.840682 | 7.503985e-58 | -8.615850e-47 |
| Msa0491020 | Msa1324000 | 0.822364 | 2.463846e-53 | -8.615850e-47 |
| Msa0491020 | Msa1363330 | 0.817774 | 2.769551e-52 | -8.615850e-47 |
| Msa0491020 | Msa1382310 | 0.813556 | 2.411171e-51 | -8.615850e-47 |
| Msa0491020 | Msa1386600 | 0.817968 | 2.503762e-52 | -8.615850e-47 |
| Msa0491020 | Msa1398480 | 0.815786 | 7.731914e-52 | -8.615850e-47 |
| Msa0491020 | Msa1406040 | 0.826662 | 2.398466e-54 | -8.615850e-47 |
| Msa0491020 | Msa1447300 | 0.856521 | 3.041804e-62 | -8.615850e-47 |
| Msa0491020 | Msa1448690 | 0.839102 | 1.936606e-57 | -8.615850e-47 |
| Msa0491020 | Msa1449880 | 0.809669 | 1.688036e-50 | -8.615850e-47 |
| Msa0491020 | Msa1453620 | 0.816638 | 4.987706e-52 | -8.615850e-47 |
| Msa0491020 | Msa1460440 | 0.830241 | 3.280749e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491020 | MtrunA17_Chr1g0164481 | 92.818 | 181 | 11 | 1 | 1 | 179 | 1 | 181 | 1.29e-119 | 335 |
| Msa0491020 | MtrunA17_Chr3g0082241 | 93.960 | 149 | 7 | 1 | 1 | 147 | 32 | 180 | 2.38e-101 | 289 |
| Msa0491020 | MtrunA17_Chr1g0211871 | 36.145 | 83 | 51 | 1 | 84 | 166 | 82 | 162 | 2.94e-13 | 64.7 |
| Msa0491020 | MtrunA17_Chr3g0125821 | 29.524 | 105 | 71 | 2 | 73 | 177 | 70 | 171 | 1.48e-12 | 62.8 |
| Msa0491020 | MtrunA17_Chr2g0317731 | 26.829 | 123 | 79 | 3 | 62 | 177 | 53 | 171 | 3.57e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491020 | AT3G06730.1 | 71.505 | 186 | 43 | 3 | 1 | 179 | 1 | 183 | 1.94e-87 | 254 |
| Msa0491020 | AT1G50320.1 | 28.736 | 174 | 113 | 5 | 3 | 176 | 11 | 173 | 7.37e-13 | 63.9 |
| Msa0491020 | AT1G43560.1 | 32.955 | 88 | 57 | 1 | 92 | 179 | 78 | 163 | 2.38e-11 | 59.7 |
Find 47 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATAATTGTAGCCTATTT+TGG | 0.101435 | 3_4:-13059758 | Msa0491020:three_prime_UTR |
| CTAACCAATTCATATGAATT+TGG | 0.168019 | 3_4:-13059720 | Msa0491020:three_prime_UTR |
| TCTTTAACATGCTTTCCTTT+AGG | 0.234896 | 3_4:+13063838 | None:intergenic |
| CTTCAATTCTGTCCCAAAAT+AGG | 0.291332 | 3_4:+13059745 | None:intergenic |
| AAAGCCAAATTCATATGAAT+TGG | 0.338463 | 3_4:+13059716 | None:intergenic |
| GTGGATATGGTGAGAGGATA+AGG | 0.365258 | 3_4:+13063895 | None:intergenic |
| TTTGATGTATTTCAGGTAAG+AGG | 0.368265 | 3_4:-13059953 | Msa0491020:intron |
| AAAGAAATGTAAAACAGTTA+AGG | 0.375104 | 3_4:-13059833 | Msa0491020:exon |
| AGATCCTACAAGATATTGTT+TGG | 0.381266 | 3_4:-13059779 | Msa0491020:three_prime_UTR |
| GATCAGGACTAATAAAGAAT+AGG | 0.400554 | 3_4:+13059921 | None:intergenic |
| GTGTGGACCATGCATATTAA+TGG | 0.405684 | 3_4:-13063588 | Msa0491020:CDS |
| TATACCAAACAATATCTTGT+AGG | 0.419629 | 3_4:+13059775 | None:intergenic |
| ATTGTTGAAGTCAGTGGATA+TGG | 0.430845 | 3_4:+13063882 | None:intergenic |
| TTGAGTGAGGAAAGAGAAAG+AGG | 0.431981 | 3_4:+13064082 | None:intergenic |
| ATCAGGACTAATAAAGAATA+GGG | 0.446630 | 3_4:+13059922 | None:intergenic |
| AAGAAATGTAAAACAGTTAA+GGG | 0.448450 | 3_4:-13059832 | Msa0491020:exon |
| ATATCTCTCATCATCTGTAT+TGG | 0.448708 | 3_4:+13059863 | None:intergenic |
| AATGGCTCAAGAACTTGAAA+TGG | 0.455916 | 3_4:-13063570 | Msa0491020:intron |
| CTAGAAATTCCAACTATGTC+AGG | 0.465876 | 3_4:+13059800 | None:intergenic |
| TTGAAGTCGACATATGTTGT+AGG | 0.467759 | 3_4:-13059658 | Msa0491020:three_prime_UTR |
| TTTGAAGAGAAAGTTGAAAA+GGG | 0.469326 | 3_4:+13063967 | None:intergenic |
| AAAGATGCTATTAGAACTGA+AGG | 0.473614 | 3_4:-13059893 | Msa0491020:CDS |
| AGAAGAGGGTGAAACAGAGA+TGG | 0.475314 | 3_4:+13063942 | None:intergenic |
| CTAAAATCTTCCATCTTCAA+TGG | 0.475382 | 3_4:-13064040 | Msa0491020:exon |
| GCGTAGAAATCAATAATAAG+AGG | 0.481926 | 3_4:+13063617 | None:intergenic |
| TTAACATGCTTTCCTTTAGG+TGG | 0.482272 | 3_4:+13063841 | None:intergenic |
| TGGAAGAGAGCCATTGAAGA+TGG | 0.499467 | 3_4:+13064030 | None:intergenic |
| CTTTCTATTGTTGAAGTCAG+TGG | 0.499988 | 3_4:+13063876 | None:intergenic |
| TTGCTTTGCAAACCACCTAA+AGG | 0.504152 | 3_4:-13063853 | Msa0491020:CDS |
| TGAGTGAGGAAAGAGAAAGA+GGG | 0.510361 | 3_4:+13064083 | None:intergenic |
| TACTCATCACCTGACATAGT+TGG | 0.517973 | 3_4:-13059809 | Msa0491020:three_prime_UTR |
| GAAGAGGGTGAAACAGAGAT+GGG | 0.519516 | 3_4:+13063943 | None:intergenic |
| TGAAGTCGACATATGTTGTA+GGG | 0.532947 | 3_4:-13059657 | Msa0491020:three_prime_UTR |
| GATTTCTACGCGACATGGTG+TGG | 0.537998 | 3_4:-13063605 | Msa0491020:CDS |
| TTGATGTATTTCAGGTAAGA+GGG | 0.540490 | 3_4:-13059952 | Msa0491020:intron |
| TGAATTTGCACGCGACATGC+AGG | 0.541865 | 3_4:-13060929 | Msa0491020:intron |
| GGACTAATAAAGAATAGGGT+AGG | 0.548631 | 3_4:+13059926 | None:intergenic |
| TCTTGAGCCATTAATATGCA+TGG | 0.556004 | 3_4:+13063581 | None:intergenic |
| AAGTCAGTGGATATGGTGAG+AGG | 0.568271 | 3_4:+13063889 | None:intergenic |
| GATGTGGAAGAGTGTAGGAA+TGG | 0.586021 | 3_4:+13064010 | None:intergenic |
| TTATTGATTTCTACGCGACA+TGG | 0.587417 | 3_4:-13063610 | Msa0491020:CDS |
| GAAATTCAAGAGCTTGTGAA+GGG | 0.595327 | 3_4:-13063653 | Msa0491020:CDS |
| AGAAATTCAAGAGCTTGTGA+AGG | 0.600875 | 3_4:-13063654 | Msa0491020:CDS |
| AGAGTAGATAGTTTGTGATG+TGG | 0.624593 | 3_4:+13063994 | None:intergenic |
| TTTGTGATGTGGAAGAGTGT+AGG | 0.646507 | 3_4:+13064005 | None:intergenic |
| AAGATGCTATTAGAACTGAA+GGG | 0.684088 | 3_4:-13059892 | Msa0491020:CDS |
| TGTTAAAGAAGACTATCTTG+TGG | 0.698077 | 3_4:-13063824 | Msa0491020:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTAATACTAAATT+TGG | - | chr3_4:13059895-13059914 | Msa0491020:CDS | 10.0% |
| !!! | GTTTTTTTAATACTAAATTT+GGG | - | chr3_4:13059896-13059915 | Msa0491020:CDS | 10.0% |
| !!! | ATCTTTGTTTAAGTTTAAAT+TGG | + | chr3_4:13060561-13060580 | None:intergenic | 15.0% |
| !! | AATCTTAAATATAACACAAA+TGG | + | chr3_4:13060752-13060771 | None:intergenic | 15.0% |
| !!! | TCATGTTGTTTTTAATTAAT+AGG | - | chr3_4:13061110-13061129 | Msa0491020:intron | 15.0% |
| !!! | CATGTTGTTTTTAATTAATA+GGG | - | chr3_4:13061111-13061130 | Msa0491020:intron | 15.0% |
| !!! | ATGTTGTTTTTAATTAATAG+GGG | - | chr3_4:13061112-13061131 | Msa0491020:intron | 15.0% |
| !! | ATGAAAAATAGTATATAAGT+GGG | + | chr3_4:13061272-13061291 | None:intergenic | 15.0% |
| !! | AATGAAAAATAGTATATAAG+TGG | + | chr3_4:13061273-13061292 | None:intergenic | 15.0% |
| !! | GATTATCTTAAAAAAAATAG+TGG | - | chr3_4:13062877-13062896 | Msa0491020:intron | 15.0% |
| !! | AAACTGTTAAAGAACTAAAA+TGG | + | chr3_4:13060301-13060320 | None:intergenic | 20.0% |
| !! | CTTATTTGAATTTATCTACA+GGG | + | chr3_4:13060538-13060557 | None:intergenic | 20.0% |
| !! | TTGTATTCTAAACAATACTT+AGG | - | chr3_4:13061017-13061036 | Msa0491020:intron | 20.0% |
| !!! | TGTTGTTTTTAATTAATAGG+GGG | - | chr3_4:13061113-13061132 | Msa0491020:intron | 20.0% |
| !! | TATACTCTAATAAATGATGA+TGG | + | chr3_4:13061532-13061551 | None:intergenic | 20.0% |
| !! | GTTTACATATAAACTAACTA+TGG | + | chr3_4:13061564-13061583 | None:intergenic | 20.0% |
| !!! | GTTAGTTTATATGTAAACTA+TGG | - | chr3_4:13061566-13061585 | Msa0491020:intron | 20.0% |
| !! | ATAGTTGAGACTTATTTATA+GGG | + | chr3_4:13061637-13061656 | None:intergenic | 20.0% |
| !! | AATAGTTGAGACTTATTTAT+AGG | + | chr3_4:13061638-13061657 | None:intergenic | 20.0% |
| !! | GTAAAATATTCTGGATTTAT+AGG | - | chr3_4:13062231-13062250 | Msa0491020:intron | 20.0% |
| !! | ATATTGAATATTCTTTGAAC+AGG | - | chr3_4:13062294-13062313 | Msa0491020:intron | 20.0% |
| !! | TTCATGAAAAATAGTATACA+GGG | + | chr3_4:13062514-13062533 | None:intergenic | 20.0% |
| !! | ATTCATGAAAAATAGTATAC+AGG | + | chr3_4:13062515-13062534 | None:intergenic | 20.0% |
| !! | TAAGAGTTATTGAATATTGT+TGG | - | chr3_4:13063003-13063022 | Msa0491020:intron | 20.0% |
| !!! | TCAAAATTTTGCCTTTATTA+TGG | - | chr3_4:13063352-13063371 | Msa0491020:intron | 20.0% |
| !!! | ATAAACTTTTGATGTATTTC+AGG | - | chr3_4:13063716-13063735 | Msa0491020:intron | 20.0% |
| !! | AAAGAAATGTAAAACAGTTA+AGG | - | chr3_4:13063843-13063862 | Msa0491020:CDS | 20.0% |
| !! | AAGAAATGTAAAACAGTTAA+GGG | - | chr3_4:13063844-13063863 | Msa0491020:CDS | 20.0% |
| ! | TTTGAAGAGAAAGTTGAAAA+GGG | + | chr3_4:13059712-13059731 | None:intergenic | 25.0% |
| !!! | TTTTGAAGAGAAAGTTGAAA+AGG | + | chr3_4:13059713-13059732 | None:intergenic | 25.0% |
| ! | AAAAAGAGATTCTTTATCTG+AGG | + | chr3_4:13060270-13060289 | None:intergenic | 25.0% |
| !!! | TTTAACAGTTTTGTAGATTG+TGG | - | chr3_4:13060310-13060329 | Msa0491020:intron | 25.0% |
| ! | GTAATTATTCACCAAAAAGT+TGG | - | chr3_4:13060349-13060368 | Msa0491020:intron | 25.0% |
| !! | TAATACTTGAACCAACTTTT+TGG | + | chr3_4:13060363-13060382 | None:intergenic | 25.0% |
| !! | AACCAGGCTTAAATATTTTA+AGG | + | chr3_4:13060390-13060409 | None:intergenic | 25.0% |
| ! | TAAAATATTTAAGCCTGGTT+TGG | - | chr3_4:13060390-13060409 | Msa0491020:intron | 25.0% |
| ! | GCTTATTTGAATTTATCTAC+AGG | + | chr3_4:13060539-13060558 | None:intergenic | 25.0% |
| ! | CTAGCAGTTATTGTAATAAT+TGG | - | chr3_4:13060671-13060690 | Msa0491020:intron | 25.0% |
| ! | TTAACTCAATTCTACAAAAC+TGG | - | chr3_4:13061225-13061244 | Msa0491020:intron | 25.0% |
| ! | AAAAATAGTATATAAGTGGG+AGG | + | chr3_4:13061269-13061288 | None:intergenic | 25.0% |
| ! | CTGGAAATATGTATATAAGT+GGG | + | chr3_4:13061473-13061492 | None:intergenic | 25.0% |
| ! | TCTGGAAATATGTATATAAG+TGG | + | chr3_4:13061474-13061493 | None:intergenic | 25.0% |
| ! | ATATGTAAACTATGGTTAGT+TGG | - | chr3_4:13061574-13061593 | Msa0491020:intron | 25.0% |
| ! | TAGTTGAGACTTATTTATAG+GGG | + | chr3_4:13061636-13061655 | None:intergenic | 25.0% |
| !!! | ACTTTGTTTTTTGTAGTCAT+AGG | - | chr3_4:13062050-13062069 | Msa0491020:intron | 25.0% |
| ! | GAATTGTTAAAATAGACGTT+GGG | - | chr3_4:13062161-13062180 | Msa0491020:intron | 25.0% |
| ! | TCTGAACTTGTAAAATATTC+TGG | - | chr3_4:13062222-13062241 | Msa0491020:intron | 25.0% |
| ! | TGTATGGTTCTTAATGTTTA+AGG | - | chr3_4:13062549-13062568 | Msa0491020:intron | 25.0% |
| !! | GCATATTTCTATTGATTGTA+TGG | - | chr3_4:13062575-13062594 | Msa0491020:intron | 25.0% |
| !! | ATTGTATGGTTGTTAATTTG+AGG | - | chr3_4:13062589-13062608 | Msa0491020:intron | 25.0% |
| !! | TTGTATGGTTGTTAATTTGA+GGG | - | chr3_4:13062590-13062609 | Msa0491020:intron | 25.0% |
| ! | TACTCTTTACTTACTAACAT+TGG | + | chr3_4:13062624-13062643 | None:intergenic | 25.0% |
| ! | ACGTATAAACATGATTAAGA+TGG | + | chr3_4:13063636-13063655 | None:intergenic | 25.0% |
| ! | ACGTTTATTACACACATAAT+TGG | - | chr3_4:13063652-13063671 | Msa0491020:CDS | 25.0% |
| ! | ATCAGGACTAATAAAGAATA+GGG | + | chr3_4:13063757-13063776 | None:intergenic | 25.0% |
| !!! | GTTCTAATAGCATCTTTTTT+TGG | + | chr3_4:13063780-13063799 | None:intergenic | 25.0% |
| ! | TATACCAAACAATATCTTGT+AGG | + | chr3_4:13063904-13063923 | None:intergenic | 25.0% |
| !! | GTATAATTGTAGCCTATTTT+GGG | - | chr3_4:13063919-13063938 | Msa0491020:CDS | 25.0% |
| ! | CTAACCAATTCATATGAATT+TGG | - | chr3_4:13063956-13063975 | Msa0491020:CDS | 25.0% |
| ! | AAAGCCAAATTCATATGAAT+TGG | + | chr3_4:13063963-13063982 | None:intergenic | 25.0% |
| CTAAAATCTTCCATCTTCAA+TGG | - | chr3_4:13059636-13059655 | Msa0491020:three_prime_UTR | 30.0% | |
| GTTGAAGAAGAAAAAGAAGA+GGG | + | chr3_4:13059751-13059770 | None:intergenic | 30.0% | |
| TGTTGAAGAAGAAAAAGAAG+AGG | + | chr3_4:13059752-13059771 | None:intergenic | 30.0% | |
| TCTTTAACATGCTTTCCTTT+AGG | + | chr3_4:13059841-13059860 | None:intergenic | 30.0% | |
| TGTTAAAGAAGACTATCTTG+TGG | - | chr3_4:13059852-13059871 | Msa0491020:CDS | 30.0% | |
| GCGTAGAAATCAATAATAAG+AGG | + | chr3_4:13060062-13060081 | None:intergenic | 30.0% | |
| ! | TAGATTGTGGATTGTGATAT+GGG | - | chr3_4:13060323-13060342 | Msa0491020:intron | 30.0% |
| CTCCTTAAAATATTTAAGCC+TGG | - | chr3_4:13060385-13060404 | Msa0491020:intron | 30.0% | |
| !! | TACTAGTCTGTTTTACTTCT+AGG | + | chr3_4:13060587-13060606 | None:intergenic | 30.0% |
| TGCCTAGAAGTAAATTCAAT+TGG | - | chr3_4:13060617-13060636 | Msa0491020:intron | 30.0% | |
| AGCCAATTGAATTTACTTCT+AGG | + | chr3_4:13060622-13060641 | None:intergenic | 30.0% | |
| AGTAAATTCAATTGGCTACA+AGG | - | chr3_4:13060625-13060644 | Msa0491020:intron | 30.0% | |
| !! | ACAAGGTTTGACTTGATTAT+TGG | - | chr3_4:13060642-13060661 | Msa0491020:intron | 30.0% |
| GCTATACCATCTAATTCTAT+CGG | + | chr3_4:13060700-13060719 | None:intergenic | 30.0% | |
| TCATTAAAATCTATCCAGTG+TGG | - | chr3_4:13060794-13060813 | Msa0491020:intron | 30.0% | |
| !! | TGTTTTTAATTAATAGGGGG+AGG | - | chr3_4:13061116-13061135 | Msa0491020:intron | 30.0% |
| ACAATGCATTTATCCAAGAT+TGG | + | chr3_4:13061832-13061851 | None:intergenic | 30.0% | |
| ATAGGGGTAAACTTGTAATA+TGG | - | chr3_4:13061954-13061973 | Msa0491020:intron | 30.0% | |
| CTATTACAGAGCTATGATTA+AGG | + | chr3_4:13062015-13062034 | None:intergenic | 30.0% | |
| AAACAGTTGATCACAATGTT+TGG | + | chr3_4:13062085-13062104 | None:intergenic | 30.0% | |
| !! | TTATCTGTCTACTTTAGAGT+CGG | - | chr3_4:13062124-13062143 | Msa0491020:intron | 30.0% |
| GGAATTGTTAAAATAGACGT+TGG | - | chr3_4:13062160-13062179 | Msa0491020:intron | 30.0% | |
| ! | TTCTGGATTTATAGGTTTTG+AGG | - | chr3_4:13062239-13062258 | Msa0491020:intron | 30.0% |
| ! | TGGATCTATTATGTTACTTC+AGG | + | chr3_4:13062271-13062290 | None:intergenic | 30.0% |
| TGAAGTAACATAATAGATCC+AGG | - | chr3_4:13062270-13062289 | Msa0491020:intron | 30.0% | |
| CAAAGAATATTCAATATGCC+TGG | + | chr3_4:13062291-13062310 | None:intergenic | 30.0% | |
| AATTTATGCATATACCCCTT+TGG | - | chr3_4:13062438-13062457 | Msa0491020:intron | 30.0% | |
| AAGCTGCACAAATTTATTGA+AGG | + | chr3_4:13062671-13062690 | None:intergenic | 30.0% | |
| ! | CAAGGTTACAAGATTTTTGA+CGG | + | chr3_4:13062830-13062849 | None:intergenic | 30.0% |
| TAAGATGAGGACCATAATAA+AGG | + | chr3_4:13063366-13063385 | None:intergenic | 30.0% | |
| CTAGTACCATCTTTGAATTT+GGG | + | chr3_4:13063422-13063441 | None:intergenic | 30.0% | |
| ACTAGTACCATCTTTGAATT+TGG | + | chr3_4:13063423-13063442 | None:intergenic | 30.0% | |
| ! | TGGAAATTTTGTCTTCATTG+TGG | - | chr3_4:13063519-13063538 | Msa0491020:intron | 30.0% |
| ! | TTTGATGTATTTCAGGTAAG+AGG | - | chr3_4:13063723-13063742 | Msa0491020:intron | 30.0% |
| ! | TTGATGTATTTCAGGTAAGA+GGG | - | chr3_4:13063724-13063743 | Msa0491020:intron | 30.0% |
| GATCAGGACTAATAAAGAAT+AGG | + | chr3_4:13063758-13063777 | None:intergenic | 30.0% | |
| !!! | ATAGCATCTTTTTTTGGATC+AGG | + | chr3_4:13063774-13063793 | None:intergenic | 30.0% |
| AAAGATGCTATTAGAACTGA+AGG | - | chr3_4:13063783-13063802 | Msa0491020:intron | 30.0% | |
| AAGATGCTATTAGAACTGAA+GGG | - | chr3_4:13063784-13063803 | Msa0491020:intron | 30.0% | |
| ATATCTCTCATCATCTGTAT+TGG | + | chr3_4:13063816-13063835 | None:intergenic | 30.0% | |
| AGATCCTACAAGATATTGTT+TGG | - | chr3_4:13063897-13063916 | Msa0491020:CDS | 30.0% | |
| ! | GGTATAATTGTAGCCTATTT+TGG | - | chr3_4:13063918-13063937 | Msa0491020:CDS | 30.0% |
| !!! | AAAGAGTGAGTTTTTGAGTG+AGG | + | chr3_4:13059610-13059629 | None:intergenic | 35.0% |
| ! | AGAGTAGATAGTTTGTGATG+TGG | + | chr3_4:13059685-13059704 | None:intergenic | 35.0% |
| ATTGTTGAAGTCAGTGGATA+TGG | + | chr3_4:13059797-13059816 | None:intergenic | 35.0% | |
| CTTTCTATTGTTGAAGTCAG+TGG | + | chr3_4:13059803-13059822 | None:intergenic | 35.0% | |
| TTAACATGCTTTCCTTTAGG+TGG | + | chr3_4:13059838-13059857 | None:intergenic | 35.0% | |
| !! | CATTGGTCATTGCTTGTTTT+TGG | - | chr3_4:13059973-13059992 | Msa0491020:intron | 35.0% |
| AGAAATTCAAGAGCTTGTGA+AGG | - | chr3_4:13060022-13060041 | Msa0491020:intron | 35.0% | |
| GAAATTCAAGAGCTTGTGAA+GGG | - | chr3_4:13060023-13060042 | Msa0491020:intron | 35.0% | |
| !! | TTATTGATTTCTACGCGACA+TGG | - | chr3_4:13060066-13060085 | Msa0491020:intron | 35.0% |
| TCTTGAGCCATTAATATGCA+TGG | + | chr3_4:13060098-13060117 | None:intergenic | 35.0% | |
| AATGGCTCAAGAACTTGAAA+TGG | - | chr3_4:13060106-13060125 | Msa0491020:intron | 35.0% | |
| ! | TGTGTTGCTCTTATATGACT+AGG | - | chr3_4:13060160-13060179 | Msa0491020:intron | 35.0% |
| ! | GTAGATTGTGGATTGTGATA+TGG | - | chr3_4:13060322-13060341 | Msa0491020:intron | 35.0% |
| ATTTCAAAATCATGCCACAC+TGG | + | chr3_4:13060811-13060830 | None:intergenic | 35.0% | |
| TACCTTGACTTCAAAGTTAG+AGG | - | chr3_4:13060841-13060860 | Msa0491020:intron | 35.0% | |
| !! | AACCTCTAACTTTGAAGTCA+AGG | + | chr3_4:13060846-13060865 | None:intergenic | 35.0% |
| AGTTAGAGGTTTCTATCTGT+TGG | - | chr3_4:13060855-13060874 | Msa0491020:intron | 35.0% | |
| TGGTTGATCAGTAACAACAT+AGG | - | chr3_4:13060888-13060907 | Msa0491020:intron | 35.0% | |
| GTTCTCATGTTGCATTAGTT+AGG | - | chr3_4:13060933-13060952 | Msa0491020:CDS | 35.0% | |
| CTTAGGCTATTCTTTGTACA+CGG | - | chr3_4:13061034-13061053 | Msa0491020:intron | 35.0% | |
| TTAGGCTATTCTTTGTACAC+GGG | - | chr3_4:13061035-13061054 | Msa0491020:intron | 35.0% | |
| GAAAATGTGAGAAGAGTGAA+AGG | - | chr3_4:13061061-13061080 | Msa0491020:intron | 35.0% | |
| GACTGTGTTCAAATCTACAA+AGG | + | chr3_4:13061164-13061183 | None:intergenic | 35.0% | |
| AGTCTTACGTTAGATGAGAT+AGG | + | chr3_4:13061297-13061316 | None:intergenic | 35.0% | |
| !! | TCTGAAGGCATCATATAATG+TGG | - | chr3_4:13061396-13061415 | Msa0491020:intron | 35.0% |
| !! | CCTTAAAAGTCGGTTTTGTA+GGG | + | chr3_4:13061438-13061457 | None:intergenic | 35.0% |
| !! | ACCTTAAAAGTCGGTTTTGT+AGG | + | chr3_4:13061439-13061458 | None:intergenic | 35.0% |
| ACATCGATCACCTTAAAAGT+CGG | + | chr3_4:13061448-13061467 | None:intergenic | 35.0% | |
| ! | GTAAACTATGGTTAGTTGGT+TGG | - | chr3_4:13061578-13061597 | Msa0491020:intron | 35.0% |
| ACTCTACTATGAGTCTCTAT+GGG | - | chr3_4:13061691-13061710 | Msa0491020:intron | 35.0% | |
| !! | GTGCATAAGAGTATTCATGT+GGG | + | chr3_4:13061722-13061741 | None:intergenic | 35.0% |
| !! | AGTGCATAAGAGTATTCATG+TGG | + | chr3_4:13061723-13061742 | None:intergenic | 35.0% |
| TTAGTAATCATGGAATCCCA+GGG | + | chr3_4:13061774-13061793 | None:intergenic | 35.0% | |
| ! | GCTGATGATGTTAGTAATCA+TGG | + | chr3_4:13061784-13061803 | None:intergenic | 35.0% |
| TGCATTGTTACTCAACTTAG+TGG | - | chr3_4:13061844-13061863 | Msa0491020:intron | 35.0% | |
| GCATTGTTACTCAACTTAGT+GGG | - | chr3_4:13061845-13061864 | Msa0491020:intron | 35.0% | |
| TTACTCAACTTAGTGGGAAA+AGG | - | chr3_4:13061851-13061870 | Msa0491020:intron | 35.0% | |
| GACTCACATTCATGATAAGT+AGG | - | chr3_4:13061913-13061932 | Msa0491020:intron | 35.0% | |
| !! | TATCTGTCTACTTTAGAGTC+GGG | - | chr3_4:13062125-13062144 | Msa0491020:intron | 35.0% |
| TAAAATAGACGTTGGGATTC+TGG | - | chr3_4:13062168-13062187 | Msa0491020:intron | 35.0% | |
| !!! | GGATTTATAGGTTTTGAGGA+TGG | - | chr3_4:13062243-13062262 | Msa0491020:intron | 35.0% |
| AACTCACAACAAAACCAACT+GGG | + | chr3_4:13062370-13062389 | None:intergenic | 35.0% | |
| AAACTCACAACAAAACCAAC+TGG | + | chr3_4:13062371-13062390 | None:intergenic | 35.0% | |
| AATTCTAACAGCTGCAGTTA+TGG | - | chr3_4:13062461-13062480 | Msa0491020:intron | 35.0% | |
| ATTAAGAACCATACAAGCGT+AGG | + | chr3_4:13062544-13062563 | None:intergenic | 35.0% | |
| CACAAGTCATTGGAATAACA+AGG | + | chr3_4:13062848-13062867 | None:intergenic | 35.0% | |
| TGGAAAAAAGAAACATACCG+TGG | - | chr3_4:13062897-13062916 | Msa0491020:intron | 35.0% | |
| TTCATTGTGTTGGGTATGAA+GGG | - | chr3_4:13063105-13063124 | Msa0491020:intron | 35.0% | |
| AAACTTCATAAACCTTACCC+AGG | + | chr3_4:13063166-13063185 | None:intergenic | 35.0% | |
| GGGTAAGGTTTATGAAGTTT+AGG | - | chr3_4:13063166-13063185 | Msa0491020:intron | 35.0% | |
| TGGAAATTCTGCCTTCATTA+TGG | - | chr3_4:13063247-13063266 | Msa0491020:intron | 35.0% | |
| ! | TTTTGAACACACTACATGCT+CGG | + | chr3_4:13063338-13063357 | None:intergenic | 35.0% |
| TATTATGGTCCTCATCTTAC+TGG | - | chr3_4:13063367-13063386 | Msa0491020:intron | 35.0% | |
| !! | CGGTTTTGTCATGTTAAGTT+AGG | - | chr3_4:13063391-13063410 | Msa0491020:intron | 35.0% |
| !! | GTCTATCCTAGATTTGTTGA+TGG | - | chr3_4:13063441-13063460 | Msa0491020:intron | 35.0% |
| GGACTAATAAAGAATAGGGT+AGG | + | chr3_4:13063753-13063772 | None:intergenic | 35.0% | |
| CTAGAAATTCCAACTATGTC+AGG | + | chr3_4:13063879-13063898 | None:intergenic | 35.0% | |
| CTTCAATTCTGTCCCAAAAT+AGG | + | chr3_4:13063934-13063953 | None:intergenic | 35.0% | |
| TTGAAGTCGACATATGTTGT+AGG | - | chr3_4:13064018-13064037 | Msa0491020:CDS | 35.0% | |
| TGAAGTCGACATATGTTGTA+GGG | - | chr3_4:13064019-13064038 | Msa0491020:CDS | 35.0% | |
| ! | TTTGTGATGTGGAAGAGTGT+AGG | + | chr3_4:13059674-13059693 | None:intergenic | 40.0% |
| TTGCTTTGCAAACCACCTAA+AGG | - | chr3_4:13059823-13059842 | Msa0491020:three_prime_UTR | 40.0% | |
| GTGTGGACCATGCATATTAA+TGG | - | chr3_4:13060088-13060107 | Msa0491020:intron | 40.0% | |
| !!! | GTGTTGCTTGTCACATGTTT+TGG | - | chr3_4:13060188-13060207 | Msa0491020:intron | 40.0% |
| ! | TCTTTATCTGAGGCTGATAC+AGG | + | chr3_4:13060260-13060279 | None:intergenic | 40.0% |
| TTCCACTTGTCTCACTGTAT+GGG | + | chr3_4:13060514-13060533 | None:intergenic | 40.0% | |
| ATTCCACTTGTCTCACTGTA+TGG | + | chr3_4:13060515-13060534 | None:intergenic | 40.0% | |
| TGGACACCGATAGAATTAGA+TGG | - | chr3_4:13060691-13060710 | Msa0491020:intron | 40.0% | |
| TATCTGTTGGACAGTCTGTT+TGG | - | chr3_4:13060868-13060887 | Msa0491020:intron | 40.0% | |
| TCTCTATGCAGAAGATAGCA+TGG | - | chr3_4:13060983-13061002 | Msa0491020:CDS | 40.0% | |
| TAGGCTATTCTTTGTACACG+GGG | - | chr3_4:13061036-13061055 | Msa0491020:intron | 40.0% | |
| CTACAAAGGAACAGTTTGCA+TGG | + | chr3_4:13061150-13061169 | None:intergenic | 40.0% | |
| !! | GTCTAGCCTTGTAATAGCAA+GGG | + | chr3_4:13061186-13061205 | None:intergenic | 40.0% |
| !! | TGTCTAGCCTTGTAATAGCA+AGG | + | chr3_4:13061187-13061206 | None:intergenic | 40.0% |
| TTGAGTTAAGCTCAACCCAA+TGG | + | chr3_4:13061214-13061233 | None:intergenic | 40.0% | |
| GAGTCTATCCAAGATCTGAT+GGG | + | chr3_4:13061378-13061397 | None:intergenic | 40.0% | |
| AGAGTCTATCCAAGATCTGA+TGG | + | chr3_4:13061379-13061398 | None:intergenic | 40.0% | |
| AGATCTTGGATAGACTCTGA+AGG | - | chr3_4:13061381-13061400 | Msa0491020:intron | 40.0% | |
| !! | CGGTTTTGTAGGGTTTAGTT+AGG | + | chr3_4:13061428-13061447 | None:intergenic | 40.0% |
| !! | CCCTACAAAACCGACTTTTA+AGG | - | chr3_4:13061435-13061454 | Msa0491020:intron | 40.0% |
| ATCTGTTAAGAGACTCGCAT+TGG | + | chr3_4:13061508-13061527 | None:intergenic | 40.0% | |
| ! | CTATGGTTAGTTGGTTGGTT+AGG | - | chr3_4:13061583-13061602 | Msa0491020:intron | 40.0% |
| ! | AGTTGGTTGGTTAGGTAGTT+AGG | - | chr3_4:13061591-13061610 | Msa0491020:intron | 40.0% |
| CACTCTACTATGAGTCTCTA+TGG | - | chr3_4:13061690-13061709 | Msa0491020:intron | 40.0% | |
| GTTAGTAATCATGGAATCCC+AGG | + | chr3_4:13061775-13061794 | None:intergenic | 40.0% | |
| AACAAGGATGAAGCCAATCT+TGG | - | chr3_4:13061816-13061835 | Msa0491020:intron | 40.0% | |
| AACTTAGTGGGAAAAGGCTT+TGG | - | chr3_4:13061857-13061876 | Msa0491020:intron | 40.0% | |
| !!! | GCTTGTTTTGTTGCATTTGC+AGG | + | chr3_4:13062197-13062216 | None:intergenic | 40.0% |
| AATGTTCCATTAGTCCCAGT+TGG | - | chr3_4:13062353-13062372 | Msa0491020:intron | 40.0% | |
| ACAAAACCAACTGGGACTAA+TGG | + | chr3_4:13062362-13062381 | None:intergenic | 40.0% | |
| CAGCTGTTAGAATTCCAAAG+GGG | + | chr3_4:13062455-13062474 | None:intergenic | 40.0% | |
| GCAGCTGTTAGAATTCCAAA+GGG | + | chr3_4:13062456-13062475 | None:intergenic | 40.0% | |
| TGCAGCTGTTAGAATTCCAA+AGG | + | chr3_4:13062457-13062476 | None:intergenic | 40.0% | |
| ATTTGACTCCTACGCTTGTA+TGG | - | chr3_4:13062533-13062552 | Msa0491020:intron | 40.0% | |
| CATGCAAGTTCACAAGTCAT+TGG | + | chr3_4:13062858-13062877 | None:intergenic | 40.0% | |
| ! | TGAAACTTGCTTTGAGTCCA+CGG | + | chr3_4:13062917-13062936 | None:intergenic | 40.0% |
| ATACATATCAGTGTCGTGTC+TGG | + | chr3_4:13062960-13062979 | None:intergenic | 40.0% | |
| ACCCAAATGTTGCAATTAGG+CGG | + | chr3_4:13063060-13063079 | None:intergenic | 40.0% | |
| GCAACCCAAATGTTGCAATT+AGG | + | chr3_4:13063063-13063082 | None:intergenic | 40.0% | |
| TCCAACACCTTCATTGTGTT+GGG | - | chr3_4:13063096-13063115 | Msa0491020:intron | 40.0% | |
| CTTCATACCCAACACAATGA+AGG | + | chr3_4:13063106-13063125 | None:intergenic | 40.0% | |
| CTTCATTGTGTTGGGTATGA+AGG | - | chr3_4:13063104-13063123 | Msa0491020:intron | 40.0% | |
| GTCATACATCTAGGCTATGT+GGG | + | chr3_4:13063144-13063163 | None:intergenic | 40.0% | |
| ATAGCCTAGATGTATGACCT+GGG | - | chr3_4:13063146-13063165 | Msa0491020:intron | 40.0% | |
| TTTGAACACACTACATGCTC+GGG | + | chr3_4:13063337-13063356 | None:intergenic | 40.0% | |
| GCACAACCCAAATTCAAAGA+TGG | - | chr3_4:13063413-13063432 | Msa0491020:intron | 40.0% | |
| GGAAAGCCATCAACAAATCT+AGG | + | chr3_4:13063450-13063469 | None:intergenic | 40.0% | |
| TACTCATCACCTGACATAGT+TGG | - | chr3_4:13063867-13063886 | Msa0491020:CDS | 40.0% | |
| TGGAAGAGAGCCATTGAAGA+TGG | + | chr3_4:13059649-13059668 | None:intergenic | 45.0% | |
| ! | GATGTGGAAGAGTGTAGGAA+TGG | + | chr3_4:13059669-13059688 | None:intergenic | 45.0% |
| GAAGAGGGTGAAACAGAGAT+GGG | + | chr3_4:13059736-13059755 | None:intergenic | 45.0% | |
| AGAAGAGGGTGAAACAGAGA+TGG | + | chr3_4:13059737-13059756 | None:intergenic | 45.0% | |
| GTGGATATGGTGAGAGGATA+AGG | + | chr3_4:13059784-13059803 | None:intergenic | 45.0% | |
| AAGTCAGTGGATATGGTGAG+AGG | + | chr3_4:13059790-13059809 | None:intergenic | 45.0% | |
| ! | TCTGAGGCTGATACAGGTAA+AGG | + | chr3_4:13060254-13060273 | None:intergenic | 45.0% |
| !! | TTAAGCCTGGTTTGGATGCA+CGG | - | chr3_4:13060398-13060417 | Msa0491020:intron | 45.0% |
| TTAATCCGTGCATCCAAACC+AGG | + | chr3_4:13060406-13060425 | None:intergenic | 45.0% | |
| !! | ATTAATAGGGGGAGGCACTT+AGG | - | chr3_4:13061124-13061143 | Msa0491020:intron | 45.0% |
| !! | CACAGTCCCTTGCTATTACA+AGG | - | chr3_4:13061177-13061196 | Msa0491020:intron | 45.0% |
| AAGGCTAGACAGTCACCATT+GGG | - | chr3_4:13061196-13061215 | Msa0491020:intron | 45.0% | |
| TGTCTAGTCCTAAGCGTGAT+GGG | + | chr3_4:13061328-13061347 | None:intergenic | 45.0% | |
| ATGTCTAGTCCTAAGCGTGA+TGG | + | chr3_4:13061329-13061348 | None:intergenic | 45.0% | |
| GCATTGGACGATATAAGGTC+TGG | + | chr3_4:13061492-13061511 | None:intergenic | 45.0% | |
| GACTCGCATTGGACGATATA+AGG | + | chr3_4:13061497-13061516 | None:intergenic | 45.0% | |
| ATCACTACGACCTTTATCCC+TGG | - | chr3_4:13061754-13061773 | Msa0491020:intron | 45.0% | |
| TCACTACGACCTTTATCCCT+GGG | - | chr3_4:13061755-13061774 | Msa0491020:intron | 45.0% | |
| TCATGGAATCCCAGGGATAA+AGG | + | chr3_4:13061767-13061786 | None:intergenic | 45.0% | |
| CATCCTTGTTGCATGCTAAG+AGG | + | chr3_4:13061806-13061825 | None:intergenic | 45.0% | |
| ACAAGTTTACCCCTATGCTG+CGG | + | chr3_4:13061950-13061969 | None:intergenic | 45.0% | |
| ATGTTGCAATTAGGCGGCTA+GGG | + | chr3_4:13063054-13063073 | None:intergenic | 45.0% | |
| AATGTTGCAATTAGGCGGCT+AGG | + | chr3_4:13063055-13063074 | None:intergenic | 45.0% | |
| AGCCGCCTAATTGCAACATT+TGG | - | chr3_4:13063055-13063074 | Msa0491020:intron | 45.0% | |
| GCCGCCTAATTGCAACATTT+GGG | - | chr3_4:13063056-13063075 | Msa0491020:intron | 45.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | + | chr3_4:13063097-13063116 | None:intergenic | 45.0% |
| CTCCAACACCTTCATTGTGT+TGG | - | chr3_4:13063095-13063114 | Msa0491020:intron | 45.0% | |
| ! | ACCCAACACAATGAAGGTGT+TGG | + | chr3_4:13063100-13063119 | None:intergenic | 45.0% |
| GGTCATACATCTAGGCTATG+TGG | + | chr3_4:13063145-13063164 | None:intergenic | 45.0% | |
| CATAGCCTAGATGTATGACC+TGG | - | chr3_4:13063145-13063164 | Msa0491020:intron | 45.0% | |
| CTTACCCAGGTCATACATCT+AGG | + | chr3_4:13063153-13063172 | None:intergenic | 45.0% | |
| CTAGATGTATGACCTGGGTA+AGG | - | chr3_4:13063151-13063170 | Msa0491020:intron | 45.0% | |
| AGTTTAGGCAGCCCTAATTG+TGG | - | chr3_4:13063181-13063200 | Msa0491020:intron | 45.0% | |
| GAAGTGTGGGACCACAATTA+GGG | + | chr3_4:13063195-13063214 | None:intergenic | 45.0% | |
| TGAAGTGTGGGACCACAATT+AGG | + | chr3_4:13063196-13063215 | None:intergenic | 45.0% | |
| TCCCACACTTCAAGCTCATA+GGG | - | chr3_4:13063204-13063223 | Msa0491020:intron | 45.0% | |
| CTAGAGGAGGACCATAATGA+AGG | + | chr3_4:13063261-13063280 | None:intergenic | 45.0% | |
| ATCAACAGTTAGGGAGCTAG+AGG | + | chr3_4:13063277-13063296 | None:intergenic | 45.0% | |
| CTAGCTCCCTAACTGTTGAT+TGG | - | chr3_4:13063277-13063296 | Msa0491020:intron | 45.0% | |
| GGGAAGCCAATCAACAGTTA+GGG | + | chr3_4:13063286-13063305 | None:intergenic | 45.0% | |
| !! | GTCCACGTTTCTAGCTCATA+GGG | - | chr3_4:13063311-13063330 | Msa0491020:intron | 45.0% |
| ATGGTCCTCATCTTACTGGT+CGG | - | chr3_4:13063371-13063390 | Msa0491020:intron | 45.0% | |
| CAAAACCGACCAGTAAGATG+AGG | + | chr3_4:13063379-13063398 | None:intergenic | 45.0% | |
| !! | ATCCACACTTCTGGCTCAAA+GGG | - | chr3_4:13063476-13063495 | Msa0491020:intron | 45.0% |
| TCAAAGGGCCAGAACATGAT+GGG | - | chr3_4:13063491-13063510 | Msa0491020:intron | 45.0% | |
| CAGATTGAAGATGTGTAGCG+AGG | + | chr3_4:13063593-13063612 | None:intergenic | 45.0% | |
| !!! | TAAAAATTTAAAATTTTCAT+TGG | - | chr3_4:13059956-13059975 | Msa0491020:intron | 5.0% |
| GATTTCTACGCGACATGGTG+TGG | - | chr3_4:13060071-13060090 | Msa0491020:intron | 50.0% | |
| CTCCCATACAGTGAGACAAG+TGG | - | chr3_4:13060509-13060528 | Msa0491020:intron | 50.0% | |
| CAAGGCTAGACAGTCACCAT+TGG | - | chr3_4:13061195-13061214 | Msa0491020:intron | 50.0% | |
| GTCTAGTCCTAAGCGTGATG+GGG | + | chr3_4:13061327-13061346 | None:intergenic | 50.0% | |
| AAGCGTAACATGACTGCGAG+TGG | - | chr3_4:13061352-13061371 | Msa0491020:intron | 50.0% | |
| CAGCCTCTTAGCATGCAACA+AGG | - | chr3_4:13061800-13061819 | Msa0491020:intron | 50.0% | |
| !! | AGAGTCGGGTTTGCTGTTCT+AGG | - | chr3_4:13062139-13062158 | Msa0491020:intron | 50.0% |
| TGAATTTGCACGCGACATGC+AGG | - | chr3_4:13062747-13062766 | Msa0491020:intron | 50.0% | |
| TGTTGCAATTAGGCGGCTAG+GGG | + | chr3_4:13063053-13063072 | None:intergenic | 50.0% | |
| GTCCCACACTTCAAGCTCAT+AGG | - | chr3_4:13063203-13063222 | Msa0491020:intron | 50.0% | |
| GCCCTATGAGCTTGAAGTGT+GGG | + | chr3_4:13063208-13063227 | None:intergenic | 50.0% | |
| AACAGTTAGGGAGCTAGAGG+AGG | + | chr3_4:13063274-13063293 | None:intergenic | 50.0% | |
| CGGGAAGCCAATCAACAGTT+AGG | + | chr3_4:13063287-13063306 | None:intergenic | 50.0% | |
| AGCTAGAAACGTGGACGATG+CGG | + | chr3_4:13063307-13063326 | None:intergenic | 50.0% | |
| !! | CGTCCACGTTTCTAGCTCAT+AGG | - | chr3_4:13063310-13063329 | Msa0491020:intron | 50.0% |
| ! | AGCCAGAAGTGTGGATGATG+CGG | + | chr3_4:13063472-13063491 | None:intergenic | 50.0% |
| !! | CATCCACACTTCTGGCTCAA+AGG | - | chr3_4:13063475-13063494 | Msa0491020:intron | 50.0% |
| CTCAAAGGGCCAGAACATGA+TGG | - | chr3_4:13063490-13063509 | Msa0491020:intron | 50.0% | |
| CAAAGGGCCAGAACATGATG+GGG | - | chr3_4:13063492-13063511 | Msa0491020:intron | 50.0% | |
| CCAAACACCCCATCATGTTC+TGG | + | chr3_4:13063502-13063521 | None:intergenic | 50.0% | |
| ! | CCAGAACATGATGGGGTGTT+TGG | - | chr3_4:13063499-13063518 | Msa0491020:intron | 50.0% |
| ACGCAAATGCTGCAACTAGG+CGG | + | chr3_4:13063556-13063575 | None:intergenic | 50.0% | |
| GCAACGCAAATGCTGCAACT+AGG | + | chr3_4:13063559-13063578 | None:intergenic | 50.0% | |
| ! | TAGTCCTAAGCGTGATGGGG+AGG | + | chr3_4:13061324-13061343 | None:intergenic | 55.0% |
| AGACGCTTGACCGCAGCATA+GGG | - | chr3_4:13061937-13061956 | Msa0491020:intron | 55.0% | |
| TTGCAATTAGGCGGCTAGGG+GGG | + | chr3_4:13063051-13063070 | None:intergenic | 55.0% | |
| GTTGCAATTAGGCGGCTAGG+GGG | + | chr3_4:13063052-13063071 | None:intergenic | 55.0% | |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | + | chr3_4:13063085-13063104 | None:intergenic | 55.0% |
| GGCCCTATGAGCTTGAAGTG+TGG | + | chr3_4:13063209-13063228 | None:intergenic | 55.0% | |
| TCCAACACACCCCACATGCT+CGG | + | chr3_4:13063231-13063250 | None:intergenic | 55.0% | |
| GCTAGAAACGTGGACGATGC+GGG | + | chr3_4:13063306-13063325 | None:intergenic | 55.0% | |
| GGCCCTATGAGCTAGAAACG+TGG | + | chr3_4:13063316-13063335 | None:intergenic | 55.0% | |
| TCCCGCATCATCCACACTTC+TGG | - | chr3_4:13063467-13063486 | Msa0491020:intron | 55.0% | |
| ! | GCCAGAAGTGTGGATGATGC+GGG | + | chr3_4:13063471-13063490 | None:intergenic | 55.0% |
| GTGTAGCGAGGCTGCAATGA+AGG | + | chr3_4:13063581-13063600 | None:intergenic | 55.0% | |
| CGTACCTCCCCATCACGCTT+AGG | - | chr3_4:13061317-13061336 | Msa0491020:intron | 60.0% | |
| GCGAGTGGCCCATCAGATCT+TGG | - | chr3_4:13061367-13061386 | Msa0491020:intron | 60.0% | |
| CAGACGCTTGACCGCAGCAT+AGG | - | chr3_4:13061936-13061955 | Msa0491020:intron | 60.0% | |
| GACGCTTGACCGCAGCATAG+GGG | - | chr3_4:13061938-13061957 | Msa0491020:intron | 60.0% | |
| TGCAATTAGGCGGCTAGGGG+GGG | + | chr3_4:13063050-13063069 | None:intergenic | 60.0% | |
| CTCATAGGGCCCGAGCATGT+GGG | - | chr3_4:13063218-13063237 | Msa0491020:intron | 60.0% | |
| TCATAGGGCCCGAGCATGTG+GGG | - | chr3_4:13063219-13063238 | Msa0491020:intron | 60.0% | |
| CCAACACACCCCACATGCTC+GGG | + | chr3_4:13063230-13063249 | None:intergenic | 60.0% | |
| GGCCCTTTGAGCCAGAAGTG+TGG | + | chr3_4:13063481-13063500 | None:intergenic | 60.0% | |
| TGCAACTAGGCGGCTAGAGG+AGG | + | chr3_4:13063546-13063565 | None:intergenic | 60.0% | |
| TGCTGCAACTAGGCGGCTAG+AGG | + | chr3_4:13063549-13063568 | None:intergenic | 60.0% | |
| CTAGGGGGGGATTGCAGCGA+AGG | + | chr3_4:13063037-13063056 | None:intergenic | 65.0% | |
| GCTCATAGGGCCCGAGCATG+TGG | - | chr3_4:13063217-13063236 | Msa0491020:intron | 65.0% | |
| CCCGAGCATGTGGGGTGTGT+TGG | - | chr3_4:13063227-13063246 | Msa0491020:intron | 65.0% | |
| GGGGGGGATTGCAGCGAAGG+AGG | + | chr3_4:13063034-13063053 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 13059595 | 13064103 | 13059595 | ID=Msa0491020;Name=Msa0491020 |
| chr3_4 | mRNA | 13059595 | 13064103 | 13059595 | ID=Msa0491020-mRNA-1;Parent=Msa0491020;Name=Msa0491020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=60|1|1|1|1|1|4|249|179 |
| chr3_4 | exon | 13059595 | 13059960 | 13059595 | ID=Msa0491020-mRNA-1:exon:3997;Parent=Msa0491020-mRNA-1 |
| chr3_4 | exon | 13060930 | 13061010 | 13060930 | ID=Msa0491020-mRNA-1:exon:3996;Parent=Msa0491020-mRNA-1 |
| chr3_4 | exon | 13063571 | 13063693 | 13063571 | ID=Msa0491020-mRNA-1:exon:3995;Parent=Msa0491020-mRNA-1 |
| chr3_4 | exon | 13063825 | 13064103 | 13063825 | ID=Msa0491020-mRNA-1:exon:3994;Parent=Msa0491020-mRNA-1 |
| chr3_4 | five_prime_UTR | 13064044 | 13064103 | 13064044 | ID=Msa0491020-mRNA-1:five_prime_utr;Parent=Msa0491020-mRNA-1 |
| chr3_4 | CDS | 13063825 | 13064043 | 13063825 | ID=Msa0491020-mRNA-1:cds;Parent=Msa0491020-mRNA-1 |
| chr3_4 | CDS | 13063571 | 13063693 | 13063571 | ID=Msa0491020-mRNA-1:cds;Parent=Msa0491020-mRNA-1 |
| chr3_4 | CDS | 13060930 | 13061010 | 13060930 | ID=Msa0491020-mRNA-1:cds;Parent=Msa0491020-mRNA-1 |
| chr3_4 | CDS | 13059844 | 13059960 | 13059844 | ID=Msa0491020-mRNA-1:cds;Parent=Msa0491020-mRNA-1 |
| chr3_4 | three_prime_UTR | 13059595 | 13059843 | 13059595 | ID=Msa0491020-mRNA-1:three_prime_utr;Parent=Msa0491020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
