Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744490 | AHG28987.1 | 64.674 | 368 | 66 | 5 | 1 | 304 | 966 | 1333 | 5.26e-139 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744490 | W0LWR0 | 64.674 | 368 | 66 | 5 | 1 | 304 | 966 | 1333 | 2.51e-139 | 441 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088550 | Msa0744490 | 0.804832 | 1.787512e-49 | -8.615850e-47 |
| Msa0094940 | Msa0744490 | -0.804683 | 1.920001e-49 | -8.615850e-47 |
| Msa0640380 | Msa0744490 | 0.804364 | 2.238117e-49 | -8.615850e-47 |
| Msa0679560 | Msa0744490 | 0.800515 | 1.390091e-48 | -8.615850e-47 |
| Msa0723140 | Msa0744490 | 0.802400 | 5.711821e-49 | -8.615850e-47 |
| Msa0744490 | Msa0744500 | 0.918842 | 9.450747e-87 | -8.615850e-47 |
| Msa0744490 | Msa0749150 | 0.821831 | 3.275555e-53 | -8.615850e-47 |
| Msa0744490 | Msa0775580 | 0.802958 | 4.382171e-49 | -8.615850e-47 |
| Msa0744490 | Msa0788360 | 0.929124 | 1.089984e-92 | -8.615850e-47 |
| Msa0744490 | Msa0792880 | 0.829231 | 5.779890e-55 | -8.615850e-47 |
| Msa0744490 | Msa0811000 | 0.805344 | 1.397060e-49 | -8.615850e-47 |
| Msa0744490 | Msa0826650 | 0.927790 | 7.187272e-92 | -8.615850e-47 |
| Msa0744490 | Msa0828900 | 0.828156 | 1.051635e-54 | -8.615850e-47 |
| Msa0744490 | Msa0862020 | 0.805647 | 1.206566e-49 | -8.615850e-47 |
| Msa0744490 | Msa0864690 | 0.931183 | 5.501912e-94 | -8.615850e-47 |
| Msa0744490 | Msa0886660 | 0.812261 | 4.633477e-51 | -8.615850e-47 |
| Msa0744490 | Msa1182830 | 0.833728 | 4.512792e-56 | -8.615850e-47 |
| Msa0744490 | Msa1204980 | -0.800965 | 1.124977e-48 | -8.615850e-47 |
| Msa0744490 | Msa1256540 | -0.805691 | 1.181063e-49 | -8.615850e-47 |
| Msa0744490 | Msa1296960 | -0.806108 | 9.653610e-50 | -8.615850e-47 |
| Msa0744490 | Msa1336470 | 0.817145 | 3.838349e-52 | -8.615850e-47 |
| Msa0744490 | Msa1340530 | 0.835817 | 1.345332e-56 | -8.615850e-47 |
| Msa0744490 | Msa1445250 | 0.801273 | 9.732655e-49 | -8.615850e-47 |
| Msa0744490 | Msa1457070 | 0.813827 | 2.101686e-51 | -8.615850e-47 |
| Msa0744490 | Msa1460310 | -0.803303 | 3.717772e-49 | -8.615850e-47 |
| Msa0744490 | Msa1463560 | -0.808147 | 3.572762e-50 | -8.615850e-47 |
| Msa0135360 | Msa0744490 | 0.801306 | 9.582210e-49 | -8.615850e-47 |
| Msa0153440 | Msa0744490 | 0.825695 | 4.073684e-54 | -8.615850e-47 |
| Msa0185640 | Msa0744490 | -0.802224 | 6.208960e-49 | -8.615850e-47 |
| Msa0379340 | Msa0744490 | -0.809983 | 1.444663e-50 | -8.615850e-47 |
| Msa0389050 | Msa0744490 | 0.801431 | 9.032823e-49 | -8.615850e-47 |
| Msa0389060 | Msa0744490 | 0.810441 | 1.150764e-50 | -8.615850e-47 |
| Msa0428850 | Msa0744490 | -0.807638 | 4.584318e-50 | -8.615850e-47 |
| Msa0463460 | Msa0744490 | 0.808780 | 2.617495e-50 | -8.615850e-47 |
| Msa0260270 | Msa0744490 | -0.803904 | 2.789858e-49 | -8.615850e-47 |
| Msa0264940 | Msa0744490 | -0.801291 | 9.651237e-49 | -8.615850e-47 |
| Msa0302990 | Msa0744490 | -0.802956 | 4.385958e-49 | -8.615850e-47 |
| Msa0342340 | Msa0744490 | -0.806699 | 7.244421e-50 | -8.615850e-47 |
| Msa0509020 | Msa0744490 | 0.813222 | 2.855742e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744490 | MtrunA17_Chr5g0439121 | 46.348 | 356 | 133 | 9 | 1 | 301 | 1104 | 1456 | 2.25e-76 | 254 |
| Msa0744490 | MtrunA17_Chr5g0439121 | 30.084 | 359 | 182 | 13 | 2 | 305 | 796 | 1140 | 4.47e-20 | 90.9 |
| Msa0744490 | MtrunA17_Chr3g0108821 | 31.928 | 332 | 181 | 11 | 2 | 305 | 1056 | 1370 | 1.44e-31 | 124 |
| Msa0744490 | MtrunA17_Chr1g0160951 | 30.178 | 338 | 177 | 10 | 2 | 300 | 855 | 1172 | 1.89e-31 | 124 |
| Msa0744490 | MtrunA17_Chr3g0108811 | 30.793 | 328 | 182 | 11 | 2 | 301 | 1077 | 1387 | 1.81e-29 | 118 |
| Msa0744490 | MtrunA17_Chr5g0443761 | 31.461 | 356 | 177 | 11 | 4 | 300 | 678 | 1025 | 7.14e-26 | 107 |
| Msa0744490 | MtrunA17_Chr3g0108151 | 28.947 | 380 | 183 | 10 | 1 | 305 | 785 | 1152 | 1.61e-24 | 103 |
| Msa0744490 | MtrunA17_Chr3g0108071 | 30.189 | 265 | 154 | 7 | 56 | 305 | 270 | 518 | 2.16e-23 | 100 |
| Msa0744490 | MtrunA17_Chr3g0108111 | 27.645 | 293 | 166 | 9 | 51 | 305 | 45 | 329 | 3.01e-23 | 99.8 |
| Msa0744490 | MtrunA17_Chr3g0108011 | 25.526 | 333 | 185 | 8 | 2 | 305 | 1096 | 1394 | 3.39e-22 | 97.4 |
| Msa0744490 | MtrunA17_Chr3g0091861 | 27.507 | 349 | 188 | 11 | 2 | 305 | 1005 | 1333 | 6.16e-21 | 93.6 |
| Msa0744490 | MtrunA17_Chr3g0099591 | 29.446 | 343 | 172 | 13 | 3 | 301 | 841 | 1157 | 1.03e-19 | 89.7 |
| Msa0744490 | MtrunA17_Chr3g0107931 | 27.273 | 286 | 163 | 8 | 57 | 305 | 1129 | 1406 | 1.17e-19 | 89.7 |
| Msa0744490 | MtrunA17_Chr3g0107271 | 35.119 | 168 | 84 | 4 | 157 | 305 | 19 | 180 | 2.30e-18 | 82.8 |
| Msa0744490 | MtrunA17_Chr3g0105481 | 29.536 | 237 | 136 | 6 | 99 | 304 | 962 | 1198 | 3.67e-16 | 79.3 |
| Msa0744490 | MtrunA17_Chr3g0105601 | 27.381 | 252 | 135 | 7 | 97 | 304 | 157 | 404 | 3.69e-15 | 75.9 |
| Msa0744490 | MtrunA17_Chr3g0108171 | 29.891 | 184 | 115 | 2 | 130 | 301 | 1056 | 1237 | 1.41e-14 | 74.7 |
| Msa0744490 | MtrunA17_Chr3g0105501 | 34.959 | 123 | 64 | 2 | 195 | 301 | 12 | 134 | 3.85e-14 | 70.1 |
| Msa0744490 | MtrunA17_Chr3g0105521 | 33.333 | 141 | 78 | 2 | 180 | 304 | 1026 | 1166 | 8.75e-14 | 72.0 |
| Msa0744490 | MtrunA17_Chr3g0097601 | 32.639 | 144 | 77 | 2 | 182 | 305 | 42 | 185 | 9.56e-14 | 70.1 |
| Msa0744490 | MtrunA17_Chr3g0105551 | 34.752 | 141 | 76 | 2 | 180 | 304 | 1144 | 1284 | 1.16e-13 | 71.6 |
| Msa0744490 | MtrunA17_Chr3g0100261 | 29.052 | 327 | 185 | 12 | 5 | 301 | 855 | 1164 | 6.83e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAAATGTTGATCATATT+TGG | 0.126725 | 5_1:-65287674 | None:intergenic |
| TTCAAGGCCTGGTGAATCTT+AGG | 0.217600 | 5_1:+65287534 | Msa0744490:intron |
| TCTTAAGTTGCTACACATTT+GGG | 0.251090 | 5_1:+65288507 | Msa0744490:CDS |
| CATAGTTTGATATATGTATT+TGG | 0.262444 | 5_1:+65287578 | Msa0744490:CDS |
| ATCTTAAGTTGCTACACATT+TGG | 0.280013 | 5_1:+65288506 | Msa0744490:CDS |
| TGGAACAGCTCTAAAATAAA+AGG | 0.288464 | 5_1:+65288352 | Msa0744490:CDS |
| TTGATATATTTAGTAAGTTA+TGG | 0.327415 | 5_1:+65287374 | Msa0744490:CDS |
| CTAAAACAGGAAGCTCAGTT+TGG | 0.360674 | 5_1:-65287628 | None:intergenic |
| ATGATCAAATACTCCAGTTC+AGG | 0.374579 | 5_1:-65288748 | None:intergenic |
| TTGAAGGGTCGTAGAATGTT+TGG | 0.375627 | 5_1:-65288482 | None:intergenic |
| GCTCAGTTTGGATCTTGTTA+TGG | 0.376129 | 5_1:-65287616 | None:intergenic |
| TCAAATACTTTCTCCAGATT+AGG | 0.377194 | 5_1:-65288781 | None:intergenic |
| AAAGTATTTGAATGTCAAAA+AGG | 0.379083 | 5_1:+65288793 | Msa0744490:CDS |
| TACCAGAGCTGACCTATATA+TGG | 0.380462 | 5_1:+65288452 | Msa0744490:CDS |
| TTTGGCACCCTTCCATATAT+AGG | 0.384335 | 5_1:-65288464 | None:intergenic |
| AAATAAAGATGAAATAATTC+AGG | 0.389111 | 5_1:+65287409 | Msa0744490:CDS |
| ATATATCAACTCATGGTATT+CGG | 0.396842 | 5_1:-65287360 | None:intergenic |
| TGTTGGAATCTGTTGCTGTT+TGG | 0.402862 | 5_1:+65288332 | Msa0744490:CDS |
| CGTTCATTGGAAGTTGATCT+TGG | 0.407313 | 5_1:-65288384 | None:intergenic |
| ATGACAATCCTTAGCAAAGA+TGG | 0.426555 | 5_1:-65287719 | None:intergenic |
| CATAAATCAAGATCCTAATC+TGG | 0.429048 | 5_1:+65288768 | Msa0744490:CDS |
| CTGGTAAATTGACCAAGTTC+AGG | 0.431730 | 5_1:-65288435 | None:intergenic |
| CGCATTACAGTGTGATGGAT+TGG | 0.436667 | 5_1:+65288600 | Msa0744490:CDS |
| GTTGCTTGCCGTACGTTCAT+TGG | 0.443510 | 5_1:-65288397 | None:intergenic |
| ACGTACGGCAAGCAACTTCA+TGG | 0.446669 | 5_1:+65288404 | Msa0744490:CDS |
| TTTGTCTGTTAATACTCTGA+TGG | 0.464686 | 5_1:+65287763 | Msa0744490:CDS |
| ACCCCACGAGTTTCCTGAAC+TGG | 0.464861 | 5_1:+65288735 | Msa0744490:CDS |
| TTGATATATGTATTTGGTCA+TGG | 0.469886 | 5_1:+65287584 | Msa0744490:CDS |
| TAAATTGCCCATCTTTGCTA+AGG | 0.492126 | 5_1:+65287711 | Msa0744490:CDS |
| TTCCATATATAGGTCAGCTC+TGG | 0.517020 | 5_1:-65288454 | None:intergenic |
| TCAAGGCCTGGTGAATCTTA+GGG | 0.524499 | 5_1:+65287535 | Msa0744490:intron |
| ATCTTAGGGATATTGAAATA+CGG | 0.539010 | 5_1:+65287549 | Msa0744490:CDS |
| AGGATTGTCATGGAAGATGT+TGG | 0.544244 | 5_1:+65287731 | Msa0744490:CDS |
| ATCTTTGCTAAGGATTGTCA+TGG | 0.546221 | 5_1:+65287721 | Msa0744490:CDS |
| CAGAGTATTAACAGACAAAG+TGG | 0.547765 | 5_1:-65287759 | None:intergenic |
| TTACTAAATATATCAACTCA+TGG | 0.549358 | 5_1:-65287367 | None:intergenic |
| CAATATCCCTAAGATTCACC+AGG | 0.554360 | 5_1:-65287541 | None:intergenic |
| ATCAACTTCCAATGAACGTA+CGG | 0.557403 | 5_1:+65288389 | Msa0744490:CDS |
| TGACAATCCTTAGCAAAGAT+GGG | 0.570946 | 5_1:-65287718 | None:intergenic |
| CTAGGATCTTCAACTGAGGT+AGG | 0.571884 | 5_1:-65288576 | None:intergenic |
| ATGGTTAATAGACCTGAACT+TGG | 0.575246 | 5_1:+65288423 | Msa0744490:CDS |
| GGGGTGCAGAGAAATAGAAC+AGG | 0.579657 | 5_1:-65288717 | None:intergenic |
| CTCCAGTTCAGGAAACTCGT+GGG | 0.586004 | 5_1:-65288737 | None:intergenic |
| AGAGCTGACCTATATATGGA+AGG | 0.590238 | 5_1:+65288456 | Msa0744490:CDS |
| CATCACACTGTAATGCGACT+AGG | 0.596988 | 5_1:-65288594 | None:intergenic |
| CTTAAGTTGCTACACATTTG+GGG | 0.599822 | 5_1:+65288508 | Msa0744490:CDS |
| ACTCCAGTTCAGGAAACTCG+TGG | 0.601936 | 5_1:-65288738 | None:intergenic |
| GAGCTGACCTATATATGGAA+GGG | 0.604023 | 5_1:+65288457 | Msa0744490:CDS |
| CTAGTCGCATTACAGTGTGA+TGG | 0.618087 | 5_1:+65288595 | Msa0744490:CDS |
| TGAAGTCAAGTGCATAGCTG+TGG | 0.659975 | 5_1:-65287318 | None:intergenic |
| GTCAAGTGCATAGCTGTGGA+TGG | 0.666416 | 5_1:-65287314 | None:intergenic |
| GCGACTAGGATCTTCAACTG+AGG | 0.666779 | 5_1:-65288580 | None:intergenic |
| TCCAGTTCAGGAAACTCGTG+GGG | 0.689474 | 5_1:-65288736 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTATTAATTAAAT+TGG | + | chr5_1:65288084-65288103 | Msa0744490:intron | 0.0% |
| !!! | TTTTTTTTATTAATTAAATT+GGG | + | chr5_1:65288085-65288104 | Msa0744490:intron | 0.0% |
| !!! | AATTTATATTGTAATTTTCT+GGG | - | chr5_1:65287697-65287716 | None:intergenic | 10.0% |
| !!! | ATAGAAAATATTAATGATTT+TGG | - | chr5_1:65290848-65290867 | None:intergenic | 10.0% |
| !! | TCATGATATTAAAATAATTT+GGG | - | chr5_1:65290918-65290937 | None:intergenic | 10.0% |
| !! | ATCATGATATTAAAATAATT+TGG | - | chr5_1:65290919-65290938 | None:intergenic | 10.0% |
| !! | AAAATAAAAAAATAAATGCT+TGG | - | chr5_1:65292435-65292454 | None:intergenic | 10.0% |
| !! | TTGATATATTTAGTAAGTTA+TGG | + | chr5_1:65287374-65287393 | Msa0744490:CDS | 15.0% |
| !! | AAATAAAGATGAAATAATTC+AGG | + | chr5_1:65287409-65287428 | Msa0744490:CDS | 15.0% |
| !!! | CAATTTATATTGTAATTTTC+TGG | - | chr5_1:65287698-65287717 | None:intergenic | 15.0% |
| !! | TCATACTTTGTATAATAAAA+AGG | + | chr5_1:65287840-65287859 | Msa0744490:intron | 15.0% |
| !! | CATACTTTGTATAATAAAAA+GGG | + | chr5_1:65287841-65287860 | Msa0744490:intron | 15.0% |
| !!! | GTGTTATATTTAATTTTATG+TGG | - | chr5_1:65290693-65290712 | None:intergenic | 15.0% |
| !! | TTTATGTTAAATTTACATGT+GGG | - | chr5_1:65291367-65291386 | None:intergenic | 15.0% |
| !! | TATTATTAACTTAAGCTAAA+TGG | + | chr5_1:65292511-65292530 | Msa0744490:intron | 15.0% |
| !! | TTACTAAATATATCAACTCA+TGG | - | chr5_1:65287370-65287389 | None:intergenic | 20.0% |
| !! | CATAGTTTGATATATGTATT+TGG | + | chr5_1:65287578-65287597 | Msa0744490:CDS | 20.0% |
| !!! | AAAGTATTTGAATGTCAAAA+AGG | + | chr5_1:65288793-65288812 | Msa0744490:CDS | 20.0% |
| !!! | AATATTACATGTTTAAGTTG+TGG | - | chr5_1:65288850-65288869 | None:intergenic | 20.0% |
| !! | TAAATCTGTAAAATACTGTT+AGG | - | chr5_1:65289205-65289224 | None:intergenic | 20.0% |
| !!! | AACAGTATTTTACAGATTTA+TGG | + | chr5_1:65289205-65289224 | Msa0744490:intron | 20.0% |
| !!! | CTAAAGTGATTACATTATTT+TGG | + | chr5_1:65289637-65289656 | Msa0744490:intron | 20.0% |
| !!! | TTTAGTATTTTGAAAATGGT+GGG | - | chr5_1:65289679-65289698 | None:intergenic | 20.0% |
| !!! | ATTTAGTATTTTGAAAATGG+TGG | - | chr5_1:65289680-65289699 | None:intergenic | 20.0% |
| !!! | GTGATTTAGTATTTTGAAAA+TGG | - | chr5_1:65289683-65289702 | None:intergenic | 20.0% |
| !! | AATACTAAATCACATAAATC+CGG | + | chr5_1:65289690-65289709 | Msa0744490:intron | 20.0% |
| !! | AAACTTAACTTACTAAGTAA+TGG | - | chr5_1:65289756-65289775 | None:intergenic | 20.0% |
| !!! | ATTGGTAATCAATTAGATTT+GGG | + | chr5_1:65290211-65290230 | Msa0744490:intron | 20.0% |
| !! | ATACATTGAAGACATTATTA+GGG | - | chr5_1:65290249-65290268 | None:intergenic | 20.0% |
| !! | AATACATTGAAGACATTATT+AGG | - | chr5_1:65290250-65290269 | None:intergenic | 20.0% |
| !! | GTTAAATATTGTTATAGCAA+AGG | - | chr5_1:65290513-65290532 | None:intergenic | 20.0% |
| !! | ATTCAATGTATGATATATCT+TGG | - | chr5_1:65290577-65290596 | None:intergenic | 20.0% |
| !! | CATGATAATATGAAAAGTAA+TGG | - | chr5_1:65290956-65290975 | None:intergenic | 20.0% |
| !! | TAAATTGTCAAAATATCAAG+TGG | - | chr5_1:65291049-65291068 | None:intergenic | 20.0% |
| !! | AATATGTTAGATTTAACATG+TGG | - | chr5_1:65291183-65291202 | None:intergenic | 20.0% |
| !! | GTTTATGTTAAATTTACATG+TGG | - | chr5_1:65291368-65291387 | None:intergenic | 20.0% |
| !! | TATGATTTACTTGTGATTAA+AGG | - | chr5_1:65291513-65291532 | None:intergenic | 20.0% |
| !! | TAAATCTGTAAAATACTGTT+AGG | - | chr5_1:65289205-65289224 | None:intergenic | 20.0% |
| !!! | AACAGTATTTTACAGATTTA+TGG | + | chr5_1:65289205-65289224 | Msa0744490:intron | 20.0% |
| !! | ATAATGACATTCATATACAT+TGG | - | chr5_1:65292262-65292281 | None:intergenic | 20.0% |
| !!! | CTAAAGTGATTACATTATTT+TGG | + | chr5_1:65289637-65289656 | Msa0744490:intron | 20.0% |
| !! | AATAAATTTCAATCTACACA+AGG | + | chr5_1:65292601-65292620 | Msa0744490:intron | 20.0% |
| !! | TTAAATAGCCAAATTTGATT+GGG | - | chr5_1:65292833-65292852 | None:intergenic | 20.0% |
| !! | TTTAAATAGCCAAATTTGAT+TGG | - | chr5_1:65292834-65292853 | None:intergenic | 20.0% |
| ! | ATATATCAACTCATGGTATT+CGG | - | chr5_1:65287363-65287382 | None:intergenic | 25.0% |
| ! | ATCTTAGGGATATTGAAATA+CGG | + | chr5_1:65287549-65287568 | Msa0744490:CDS | 25.0% |
| ! | TTGATATATGTATTTGGTCA+TGG | + | chr5_1:65287584-65287603 | Msa0744490:CDS | 25.0% |
| ! | TAGCATTGTCCTAATAATAA+TGG | + | chr5_1:65288029-65288048 | Msa0744490:intron | 25.0% |
| ! | AGCATTGTCCTAATAATAAT+GGG | + | chr5_1:65288030-65288049 | Msa0744490:intron | 25.0% |
| !! | TCCATATAACTGAAGTTTTA+AGG | + | chr5_1:65288202-65288221 | Msa0744490:intron | 25.0% |
| ! | ACCTTAAAACTTCAGTTATA+TGG | - | chr5_1:65288206-65288225 | None:intergenic | 25.0% |
| ! | AGCAAGTATAAAAAATATGC+AGG | + | chr5_1:65288309-65288328 | Msa0744490:CDS | 25.0% |
| ! | TATAAAAAATATGCAGGTGT+TGG | + | chr5_1:65288315-65288334 | Msa0744490:CDS | 25.0% |
| !! | TAGCAACTTAAGATTTTGAA+GGG | - | chr5_1:65288500-65288519 | None:intergenic | 25.0% |
| ! | TCAAGATATACAACAATCTT+TGG | - | chr5_1:65288970-65288989 | None:intergenic | 25.0% |
| ! | TTGTTGTATATCTTGATTGT+TGG | + | chr5_1:65288974-65288993 | Msa0744490:intron | 25.0% |
| ! | TGTTGTATATCTTGATTGTT+GGG | + | chr5_1:65288975-65288994 | Msa0744490:intron | 25.0% |
| !! | GCATAACTATTAAACTTTTC+AGG | - | chr5_1:65289022-65289041 | None:intergenic | 25.0% |
| ! | TATAATGCACTATAAATGCT+TGG | - | chr5_1:65289374-65289393 | None:intergenic | 25.0% |
| ! | GGTTATAACATTTGGTAAAA+GGG | - | chr5_1:65289518-65289537 | None:intergenic | 25.0% |
| ! | TGGTTATAACATTTGGTAAA+AGG | - | chr5_1:65289519-65289538 | None:intergenic | 25.0% |
| ! | GTGTATATGGTTATAACATT+TGG | - | chr5_1:65289526-65289545 | None:intergenic | 25.0% |
| !!! | TTAGTATTTTGAAAATGGTG+GGG | - | chr5_1:65289678-65289697 | None:intergenic | 25.0% |
| ! | ATAACTTACACATAGAATCT+CGG | + | chr5_1:65289840-65289859 | Msa0744490:intron | 25.0% |
| !! | TCTTACAAGTCTTTTATCAA+TGG | - | chr5_1:65289868-65289887 | None:intergenic | 25.0% |
| ! | CTCTTAAATTCTCATGAAAA+GGG | - | chr5_1:65289922-65289941 | None:intergenic | 25.0% |
| ! | ACTCTTAAATTCTCATGAAA+AGG | - | chr5_1:65289923-65289942 | None:intergenic | 25.0% |
| ! | CAAATCTAATTGATTACCAA+TGG | - | chr5_1:65290212-65290231 | None:intergenic | 25.0% |
| !! | CATTGGTAATCAATTAGATT+TGG | + | chr5_1:65290210-65290229 | Msa0744490:intron | 25.0% |
| ! | ATAACCAAACTTCATAAGAT+GGG | + | chr5_1:65290644-65290663 | Msa0744490:intron | 25.0% |
| !!! | TGTAAGTTGATATATGTTCA+TGG | - | chr5_1:65290880-65290899 | None:intergenic | 25.0% |
| ! | ATATATGTCGTGGAAATTTA+TGG | - | chr5_1:65291413-65291432 | None:intergenic | 25.0% |
| ! | TCAAGATATACAACAATCTT+TGG | - | chr5_1:65288970-65288989 | None:intergenic | 25.0% |
| ! | TTGTTGTATATCTTGATTGT+TGG | + | chr5_1:65288974-65288993 | Msa0744490:intron | 25.0% |
| ! | TGTTGTATATCTTGATTGTT+GGG | + | chr5_1:65288975-65288994 | Msa0744490:intron | 25.0% |
| !! | GCATAACTATTAAACTTTTC+AGG | - | chr5_1:65289022-65289041 | None:intergenic | 25.0% |
| ! | TATAATGCAGTATAAATGCT+TGG | - | chr5_1:65292041-65292060 | None:intergenic | 25.0% |
| ! | GGTTATAACATTTGGTAAAA+GGG | - | chr5_1:65289518-65289537 | None:intergenic | 25.0% |
| ! | TGGTTATAACATTTGGTAAA+AGG | - | chr5_1:65289519-65289538 | None:intergenic | 25.0% |
| ! | GTGTATATGGTTATAACATT+TGG | - | chr5_1:65289526-65289545 | None:intergenic | 25.0% |
| ! | AATAGTTACAAAATTCGACT+TGG | + | chr5_1:65292461-65292480 | Msa0744490:intron | 25.0% |
| ! | CACTGATACTTTTCAATCTT+GGG | - | chr5_1:65287469-65287488 | None:intergenic | 30.0% |
| ! | ACACTGATACTTTTCAATCT+TGG | - | chr5_1:65287470-65287489 | None:intergenic | 30.0% |
| TGTTGTGAATTGCAACTTAT+TGG | + | chr5_1:65287487-65287506 | Msa0744490:intron | 30.0% | |
| TTCCATGTATCTTATGTTCA+AGG | + | chr5_1:65287518-65287537 | Msa0744490:intron | 30.0% | |
| !!! | AGTGCAACTTTTTCTAAAAC+AGG | - | chr5_1:65287644-65287663 | None:intergenic | 30.0% |
| GGGAAAATGTTGATCATATT+TGG | - | chr5_1:65287677-65287696 | None:intergenic | 30.0% | |
| TTTGTCTGTTAATACTCTGA+TGG | + | chr5_1:65287763-65287782 | Msa0744490:CDS | 30.0% | |
| CAAGACAACATTTCTATTTG+GGG | - | chr5_1:65287906-65287925 | None:intergenic | 30.0% | |
| CCAAGACAACATTTCTATTT+GGG | - | chr5_1:65287907-65287926 | None:intergenic | 30.0% | |
| TCCAAGACAACATTTCTATT+TGG | - | chr5_1:65287908-65287927 | None:intergenic | 30.0% | |
| GCATTGTCCTAATAATAATG+GGG | + | chr5_1:65288031-65288050 | Msa0744490:intron | 30.0% | |
| TTAGGAACCCCATTATTATT+AGG | - | chr5_1:65288041-65288060 | None:intergenic | 30.0% | |
| TAATTAAATTGGGCACCTAA+TGG | + | chr5_1:65288095-65288114 | Msa0744490:intron | 30.0% | |
| ! | GATGAGTAATATGCTTTTGT+AGG | + | chr5_1:65288276-65288295 | Msa0744490:intron | 30.0% |
| ! | TATGCTTTTGTAGGATATAG+TGG | + | chr5_1:65288285-65288304 | Msa0744490:intron | 30.0% |
| !! | TGGAACAGCTCTAAAATAAA+AGG | + | chr5_1:65288352-65288371 | Msa0744490:CDS | 30.0% |
| ! | GTAGCAACTTAAGATTTTGA+AGG | - | chr5_1:65288501-65288520 | None:intergenic | 30.0% |
| ! | ATCTTAAGTTGCTACACATT+TGG | + | chr5_1:65288506-65288525 | Msa0744490:CDS | 30.0% |
| ! | TCTTAAGTTGCTACACATTT+GGG | + | chr5_1:65288507-65288526 | Msa0744490:CDS | 30.0% |
| CATAAATCAAGATCCTAATC+TGG | + | chr5_1:65288768-65288787 | Msa0744490:CDS | 30.0% | |
| TCAAATACTTTCTCCAGATT+AGG | - | chr5_1:65288784-65288803 | None:intergenic | 30.0% | |
| TCCAATATACAGTTATTGGT+GGG | - | chr5_1:65289099-65289118 | None:intergenic | 30.0% | |
| ATCCAATATACAGTTATTGG+TGG | - | chr5_1:65289100-65289119 | None:intergenic | 30.0% | |
| TGCATCCAATATACAGTTAT+TGG | - | chr5_1:65289103-65289122 | None:intergenic | 30.0% | |
| ACTGTATATTGGATGCAATA+AGG | + | chr5_1:65289106-65289125 | Msa0744490:intron | 30.0% | |
| ! | AGAACAACAACACACAATTT+TGG | - | chr5_1:65289324-65289343 | None:intergenic | 30.0% |
| ACTATAAATGCTTGGCATTT+GGG | - | chr5_1:65289366-65289385 | None:intergenic | 30.0% | |
| !! | TAGCATTGATTCAAGTCAAA+GGG | - | chr5_1:65289422-65289441 | None:intergenic | 30.0% |
| !! | ATAGCATTGATTCAAGTCAA+AGG | - | chr5_1:65289423-65289442 | None:intergenic | 30.0% |
| GTGTATATGATCATAACCTT+TGG | - | chr5_1:65289467-65289486 | None:intergenic | 30.0% | |
| ATACACTTGAATCAATGCTA+TGG | + | chr5_1:65289481-65289500 | Msa0744490:intron | 30.0% | |
| !! | GACATTGATTCAAGTGTATA+TGG | - | chr5_1:65289539-65289558 | None:intergenic | 30.0% |
| ATACACTTGAATCAATGTCA+TGG | + | chr5_1:65289540-65289559 | Msa0744490:intron | 30.0% | |
| TGGGAATCATTCATATACAT+TGG | - | chr5_1:65289595-65289614 | None:intergenic | 30.0% | |
| CAAAAGTTGTAACTCTTCAT+GGG | - | chr5_1:65289614-65289633 | None:intergenic | 30.0% | |
| TCAAAAGTTGTAACTCTTCA+TGG | - | chr5_1:65289615-65289634 | None:intergenic | 30.0% | |
| !! | TAGTATTTTGAAAATGGTGG+GGG | - | chr5_1:65289677-65289696 | None:intergenic | 30.0% |
| TGTAAGATGACACATTAAGA+AGG | + | chr5_1:65289881-65289900 | Msa0744490:intron | 30.0% | |
| GACATATAGCATATATTTGC+TGG | - | chr5_1:65290028-65290047 | None:intergenic | 30.0% | |
| TATGCTATATGTCCATTAAG+AGG | + | chr5_1:65290035-65290054 | Msa0744490:intron | 30.0% | |
| TTGGACCATAAGAAGAAAAA+GGG | - | chr5_1:65290075-65290094 | None:intergenic | 30.0% | |
| ATCTAATTGATTACCAATGG+TGG | - | chr5_1:65290209-65290228 | None:intergenic | 30.0% | |
| ATTTGACGAAATGATTGACA+AGG | - | chr5_1:65290298-65290317 | None:intergenic | 30.0% | |
| TATTCTCATAGCTATGTCTA+TGG | + | chr5_1:65290381-65290400 | Msa0744490:intron | 30.0% | |
| CATAACCAAACTTCATAAGA+TGG | + | chr5_1:65290643-65290662 | Msa0744490:intron | 30.0% | |
| TAATCCCATCTTATGAAGTT+TGG | - | chr5_1:65290651-65290670 | None:intergenic | 30.0% | |
| CCATTTATGAATATATGTCG+TGG | - | chr5_1:65291423-65291442 | None:intergenic | 30.0% | |
| CCACGACATATATTCATAAA+TGG | + | chr5_1:65291420-65291439 | Msa0744490:intron | 30.0% | |
| ! | TACATTTTCATCCATGACTA+CGG | - | chr5_1:65291463-65291482 | None:intergenic | 30.0% |
| ! | GATTAAAGGCTGCAATTTTT+GGG | - | chr5_1:65291499-65291518 | None:intergenic | 30.0% |
| ! | TGATTAAAGGCTGCAATTTT+TGG | - | chr5_1:65291500-65291519 | None:intergenic | 30.0% |
| AAATCGAACCTAAAGATTGT+TGG | + | chr5_1:65291532-65291551 | Msa0744490:intron | 30.0% | |
| ATATCTTGATTGTTGGGAAA+AGG | + | chr5_1:65291648-65291667 | Msa0744490:intron | 30.0% | |
| TCCAATATACAGTTATTGGT+GGG | - | chr5_1:65289099-65289118 | None:intergenic | 30.0% | |
| ATCCAATATACAGTTATTGG+TGG | - | chr5_1:65289100-65289119 | None:intergenic | 30.0% | |
| TGCATCCAATATACAGTTAT+TGG | - | chr5_1:65289103-65289122 | None:intergenic | 30.0% | |
| ACTGTATATTGGATGCAATA+AGG | + | chr5_1:65289106-65289125 | Msa0744490:intron | 30.0% | |
| ! | AGAACAACAACACACAATTT+TGG | - | chr5_1:65289324-65289343 | None:intergenic | 30.0% |
| AGTATAAATGCTTGGCATTT+GGG | - | chr5_1:65292033-65292052 | None:intergenic | 30.0% | |
| !! | TAGCATTGATTCAAGTCAAA+GGG | - | chr5_1:65289422-65289441 | None:intergenic | 30.0% |
| !! | ATAGCATTGATTCAAGTCAA+AGG | - | chr5_1:65289423-65289442 | None:intergenic | 30.0% |
| GTGTATATGATCATAACCTT+TGG | - | chr5_1:65289467-65289486 | None:intergenic | 30.0% | |
| ATACACTTGAATCAATGCTA+TGG | + | chr5_1:65289481-65289500 | Msa0744490:intron | 30.0% | |
| !! | GACATTGATTCAAGTGTATA+TGG | - | chr5_1:65289539-65289558 | None:intergenic | 30.0% |
| ATACACTTGAATCAATGTCA+TGG | + | chr5_1:65289540-65289559 | Msa0744490:intron | 30.0% | |
| TGGGAATCATTCATATACAT+TGG | - | chr5_1:65289595-65289614 | None:intergenic | 30.0% | |
| CAAAAGTTGTAACTCTTCAT+GGG | - | chr5_1:65289614-65289633 | None:intergenic | 30.0% | |
| !! | CGACTTGGTAAATTTCAATA+CGG | + | chr5_1:65292476-65292495 | Msa0744490:intron | 30.0% |
| AAATGTTTGCATTCACCATA+TGG | - | chr5_1:65292723-65292742 | None:intergenic | 30.0% | |
| !! | ATGAAACTTGCTTTTAGGTA+TGG | - | chr5_1:65292773-65292792 | None:intergenic | 30.0% |
| !! | AACTCATGAAACTTGCTTTT+AGG | - | chr5_1:65292778-65292797 | None:intergenic | 30.0% |
| ATCATGAACCCAATCAAATT+TGG | + | chr5_1:65292822-65292841 | Msa0744490:intron | 30.0% | |
| TAAATTGCCCATCTTTGCTA+AGG | + | chr5_1:65287711-65287730 | Msa0744490:CDS | 35.0% | |
| TGACAATCCTTAGCAAAGAT+GGG | - | chr5_1:65287721-65287740 | None:intergenic | 35.0% | |
| ATGACAATCCTTAGCAAAGA+TGG | - | chr5_1:65287722-65287741 | None:intergenic | 35.0% | |
| ATCTTTGCTAAGGATTGTCA+TGG | + | chr5_1:65287721-65287740 | Msa0744490:CDS | 35.0% | |
| ! | CAGAGTATTAACAGACAAAG+TGG | - | chr5_1:65287762-65287781 | None:intergenic | 35.0% |
| AGTATGAGAATGAAGCGATA+AGG | - | chr5_1:65287827-65287846 | None:intergenic | 35.0% | |
| CCCAAATAGAAATGTTGTCT+TGG | + | chr5_1:65287904-65287923 | Msa0744490:intron | 35.0% | |
| GAATGAATATTCAGATCACG+AGG | - | chr5_1:65288184-65288203 | None:intergenic | 35.0% | |
| ATCAACTTCCAATGAACGTA+CGG | + | chr5_1:65288389-65288408 | Msa0744490:CDS | 35.0% | |
| ATGGTTAATAGACCTGAACT+TGG | + | chr5_1:65288423-65288442 | Msa0744490:CDS | 35.0% | |
| ! | CTTAAGTTGCTACACATTTG+GGG | + | chr5_1:65288508-65288527 | Msa0744490:CDS | 35.0% |
| TTGGGGTTGTAAAAAACTGA+AGG | + | chr5_1:65288525-65288544 | Msa0744490:intron | 35.0% | |
| ATGATCAAATACTCCAGTTC+AGG | - | chr5_1:65288751-65288770 | None:intergenic | 35.0% | |
| ATATTGATGCAACTTCCTGT+TGG | + | chr5_1:65288865-65288884 | Msa0744490:intron | 35.0% | |
| ATATCTTGATTGTTGGGAAG+AGG | + | chr5_1:65288981-65289000 | Msa0744490:intron | 35.0% | |
| ATGTAAACTCAAAGCGTATG+TGG | + | chr5_1:65289042-65289061 | Msa0744490:intron | 35.0% | |
| ATCGAACCTAAAGGTTAGTA+TGG | - | chr5_1:65289071-65289090 | None:intergenic | 35.0% | |
| CAATATACAGTTATTGGTGG+GGG | - | chr5_1:65289097-65289116 | None:intergenic | 35.0% | |
| CCAATATACAGTTATTGGTG+GGG | - | chr5_1:65289098-65289117 | None:intergenic | 35.0% | |
| CTCATGCATTAGAGAATTGA+TGG | + | chr5_1:65289241-65289260 | Msa0744490:intron | 35.0% | |
| CACTATAAATGCTTGGCATT+TGG | - | chr5_1:65289367-65289386 | None:intergenic | 35.0% | |
| !! | AGCATTGATTCAAGTCAAAG+GGG | - | chr5_1:65289421-65289440 | None:intergenic | 35.0% |
| TGATCATAACCTTTGGCAAA+GGG | - | chr5_1:65289460-65289479 | None:intergenic | 35.0% | |
| ATGATCATAACCTTTGGCAA+AGG | - | chr5_1:65289461-65289480 | None:intergenic | 35.0% | |
| AATTCCATGCCTTCAGATAA+TGG | + | chr5_1:65289714-65289733 | Msa0744490:intron | 35.0% | |
| TCATTCCCAAATAGTATGGT+AGG | + | chr5_1:65289780-65289799 | Msa0744490:intron | 35.0% | |
| ! | CACTTGTTCTAATGGATAGT+TGG | - | chr5_1:65289817-65289836 | None:intergenic | 35.0% |
| GTTATGCACACTTGTTCTAA+TGG | - | chr5_1:65289825-65289844 | None:intergenic | 35.0% | |
| GAAAAGGGATATATGACACA+AGG | - | chr5_1:65289907-65289926 | None:intergenic | 35.0% | |
| ACCTATGTGAGAATGAAGTT+TGG | - | chr5_1:65289971-65289990 | None:intergenic | 35.0% | |
| CTCACATAGGTAGACTATAT+CGG | + | chr5_1:65289980-65289999 | Msa0744490:intron | 35.0% | |
| TTGCTGGAATGCATACTTAT+GGG | - | chr5_1:65290012-65290031 | None:intergenic | 35.0% | |
| TTTGCTGGAATGCATACTTA+TGG | - | chr5_1:65290013-65290032 | None:intergenic | 35.0% | |
| ! | TCCTACCCTTTTTCTTCTTA+TGG | + | chr5_1:65290067-65290086 | Msa0744490:intron | 35.0% |
| ACCATAAGAAGAAAAAGGGT+AGG | - | chr5_1:65290071-65290090 | None:intergenic | 35.0% | |
| CTTGGACCATAAGAAGAAAA+AGG | - | chr5_1:65290076-65290095 | None:intergenic | 35.0% | |
| ACAATAGATAACATCCCAAG+GGG | - | chr5_1:65290107-65290126 | None:intergenic | 35.0% | |
| GACAATAGATAACATCCCAA+GGG | - | chr5_1:65290108-65290127 | None:intergenic | 35.0% | |
| TGACAATAGATAACATCCCA+AGG | - | chr5_1:65290109-65290128 | None:intergenic | 35.0% | |
| TGAAGACATTATTAGGGATG+TGG | - | chr5_1:65290243-65290262 | None:intergenic | 35.0% | |
| TTGACAAGGAATGATGTCTT+TGG | - | chr5_1:65290284-65290303 | None:intergenic | 35.0% | |
| ! | CAATTGACAAAAGTGTGTCA+TGG | - | chr5_1:65290451-65290470 | None:intergenic | 35.0% |
| CACAAGTTCCAACAATCTTT+AGG | - | chr5_1:65291543-65291562 | None:intergenic | 35.0% | |
| AAGATTGTTGGAACTTGTGT+TGG | + | chr5_1:65291544-65291563 | Msa0744490:intron | 35.0% | |
| AGATTGTTGGAACTTGTGTT+GGG | + | chr5_1:65291545-65291564 | Msa0744490:intron | 35.0% | |
| ATGTAAACTCAAAGCGTATG+TGG | + | chr5_1:65289042-65289061 | Msa0744490:intron | 35.0% | |
| ATCGAACCTAAAGGTTAGTA+TGG | - | chr5_1:65289071-65289090 | None:intergenic | 35.0% | |
| CAATATACAGTTATTGGTGG+GGG | - | chr5_1:65289097-65289116 | None:intergenic | 35.0% | |
| CCAATATACAGTTATTGGTG+GGG | - | chr5_1:65289098-65289117 | None:intergenic | 35.0% | |
| CTCATGCATTAGAGAATTGA+TGG | + | chr5_1:65289241-65289260 | Msa0744490:intron | 35.0% | |
| CAGTATAAATGCTTGGCATT+TGG | - | chr5_1:65292034-65292053 | None:intergenic | 35.0% | |
| !! | AGCATTGATTCAAGTCAAAG+GGG | - | chr5_1:65289421-65289440 | None:intergenic | 35.0% |
| TGATCATAACCTTTGGCAAA+GGG | - | chr5_1:65289460-65289479 | None:intergenic | 35.0% | |
| ATGATCATAACCTTTGGCAA+AGG | - | chr5_1:65289461-65289480 | None:intergenic | 35.0% | |
| CCAAAAGTTGTAACTCTTCA+TGG | - | chr5_1:65292326-65292345 | None:intergenic | 35.0% | |
| ! | CCATGAAGAGTTACAACTTT+TGG | + | chr5_1:65289612-65289631 | Msa0744490:intron | 35.0% |
| ! | TGAGAGAAGTTATTCAGGTT+GGG | - | chr5_1:65292389-65292408 | None:intergenic | 35.0% |
| TTGAGAGAAGTTATTCAGGT+TGG | - | chr5_1:65292390-65292409 | None:intergenic | 35.0% | |
| AACCTGAATAACTTCTCTCA+AGG | + | chr5_1:65292389-65292408 | Msa0744490:intron | 35.0% | |
| ACCTGAATAACTTCTCTCAA+GGG | + | chr5_1:65292390-65292409 | Msa0744490:intron | 35.0% | |
| TTAGCTTCTTCTTAGAAGCA+AGG | - | chr5_1:65292570-65292589 | None:intergenic | 35.0% | |
| ATGTCTATGATGCAACCATA+TGG | + | chr5_1:65292705-65292724 | Msa0744490:intron | 35.0% | |
| GGCCTTGAACATAAGATACA+TGG | - | chr5_1:65287523-65287542 | None:intergenic | 40.0% | |
| TGTATCTTATGTTCAAGGCC+TGG | + | chr5_1:65287523-65287542 | Msa0744490:intron | 40.0% | |
| CAATATCCCTAAGATTCACC+AGG | - | chr5_1:65287544-65287563 | None:intergenic | 40.0% | |
| GCTCAGTTTGGATCTTGTTA+TGG | - | chr5_1:65287619-65287638 | None:intergenic | 40.0% | |
| CTAAAACAGGAAGCTCAGTT+TGG | - | chr5_1:65287631-65287650 | None:intergenic | 40.0% | |
| AGGATTGTCATGGAAGATGT+TGG | + | chr5_1:65287731-65287750 | Msa0744490:CDS | 40.0% | |
| TGAGAATGAAGCGATAAGGA+AGG | - | chr5_1:65287823-65287842 | None:intergenic | 40.0% | |
| ATTCCTTAACCAATGTCCCA+GGG | - | chr5_1:65287883-65287902 | None:intergenic | 40.0% | |
| ACGCTTGTAAAATGGCCATT+AGG | - | chr5_1:65288113-65288132 | None:intergenic | 40.0% | |
| GATCACGATGCTCAAAAGAA+TGG | - | chr5_1:65288250-65288269 | None:intergenic | 40.0% | |
| ! | TGTTGGAATCTGTTGCTGTT+TGG | + | chr5_1:65288332-65288351 | Msa0744490:CDS | 40.0% |
| ! | CGTTCATTGGAAGTTGATCT+TGG | - | chr5_1:65288387-65288406 | None:intergenic | 40.0% |
| CTGGTAAATTGACCAAGTTC+AGG | - | chr5_1:65288438-65288457 | None:intergenic | 40.0% | |
| TACCAGAGCTGACCTATATA+TGG | + | chr5_1:65288452-65288471 | Msa0744490:CDS | 40.0% | |
| TTCCATATATAGGTCAGCTC+TGG | - | chr5_1:65288457-65288476 | None:intergenic | 40.0% | |
| AGAGCTGACCTATATATGGA+AGG | + | chr5_1:65288456-65288475 | Msa0744490:CDS | 40.0% | |
| GAGCTGACCTATATATGGAA+GGG | + | chr5_1:65288457-65288476 | Msa0744490:CDS | 40.0% | |
| TTTGGCACCCTTCCATATAT+AGG | - | chr5_1:65288467-65288486 | None:intergenic | 40.0% | |
| TTGAAGGGTCGTAGAATGTT+TGG | - | chr5_1:65288485-65288504 | None:intergenic | 40.0% | |
| TTCCTGTTGGAACTTGTGTT+GGG | + | chr5_1:65288878-65288897 | Msa0744490:intron | 40.0% | |
| TGGTTGCCATACTAACCTTT+AGG | + | chr5_1:65289062-65289081 | Msa0744490:intron | 40.0% | |
| CCCCACCAATAACTGTATAT+TGG | + | chr5_1:65289095-65289114 | Msa0744490:intron | 40.0% | |
| TGGATGCAATAAGGAATGAC+CGG | + | chr5_1:65289115-65289134 | Msa0744490:intron | 40.0% | |
| GAACTCATAGTATCCTGAAG+GGG | - | chr5_1:65289146-65289165 | None:intergenic | 40.0% | |
| GGAACTCATAGTATCCTGAA+GGG | - | chr5_1:65289147-65289166 | None:intergenic | 40.0% | |
| AGGAACTCATAGTATCCTGA+AGG | - | chr5_1:65289148-65289167 | None:intergenic | 40.0% | |
| ATACTGTTAGGAGATACGCT+TGG | - | chr5_1:65289193-65289212 | None:intergenic | 40.0% | |
| CTAATGCATGAGTGAATTGC+TGG | - | chr5_1:65289233-65289252 | None:intergenic | 40.0% | |
| GATCATAACCTTTGGCAAAG+GGG | - | chr5_1:65289459-65289478 | None:intergenic | 40.0% | |
| ! | ATCTGAAGGCATGGAATTTC+CGG | - | chr5_1:65289712-65289731 | None:intergenic | 40.0% |
| GATACCATTATCTGAAGGCA+TGG | - | chr5_1:65289721-65289740 | None:intergenic | 40.0% | |
| TCGCTCATTCCCAAATAGTA+TGG | + | chr5_1:65289776-65289795 | Msa0744490:intron | 40.0% | |
| GCTTGCCTACCATACTATTT+GGG | - | chr5_1:65289788-65289807 | None:intergenic | 40.0% | |
| AGCTTGCCTACCATACTATT+TGG | - | chr5_1:65289789-65289808 | None:intergenic | 40.0% | |
| GCCAAACTTCATTCTCACAT+AGG | + | chr5_1:65289967-65289986 | Msa0744490:intron | 40.0% | |
| TGCTGGAATGCATACTTATG+GGG | - | chr5_1:65290011-65290030 | None:intergenic | 40.0% | |
| ! | GGATGAGGTTTTCCTCTTAA+TGG | - | chr5_1:65290050-65290069 | None:intergenic | 40.0% |
| AGAAGAAAAAGGGTAGGATG+AGG | - | chr5_1:65290065-65290084 | None:intergenic | 40.0% | |
| CTTGAGTAGCATCAAGTCTT+GGG | - | chr5_1:65290172-65290191 | None:intergenic | 40.0% | |
| ACTTGAGTAGCATCAAGTCT+TGG | - | chr5_1:65290173-65290192 | None:intergenic | 40.0% | |
| ACTTGATGCTACTCAAGTGT+GGG | + | chr5_1:65290175-65290194 | Msa0744490:intron | 40.0% | |
| GATTGTTGGAACTTGTGTTG+GGG | + | chr5_1:65291546-65291565 | Msa0744490:intron | 40.0% | |
| ATTGTTGGAACTTGTGTTGG+GGG | + | chr5_1:65291547-65291566 | Msa0744490:intron | 40.0% | |
| TGGTTGCCATACTAACCTTT+AGG | + | chr5_1:65289062-65289081 | Msa0744490:intron | 40.0% | |
| CCCCACCAATAACTGTATAT+TGG | + | chr5_1:65289095-65289114 | Msa0744490:intron | 40.0% | |
| TGGATGCAATAAGGAATGAC+CGG | + | chr5_1:65289115-65289134 | Msa0744490:intron | 40.0% | |
| GAACTCATAGTATCCTGAAG+GGG | - | chr5_1:65289146-65289165 | None:intergenic | 40.0% | |
| GGAACTCATAGTATCCTGAA+GGG | - | chr5_1:65289147-65289166 | None:intergenic | 40.0% | |
| AGGAACTCATAGTATCCTGA+AGG | - | chr5_1:65289148-65289167 | None:intergenic | 40.0% | |
| ATACTGTTAGGAGATACGCT+TGG | - | chr5_1:65289193-65289212 | None:intergenic | 40.0% | |
| CTAATGCATGAGTGAATTGC+TGG | - | chr5_1:65289233-65289252 | None:intergenic | 40.0% | |
| GATCATAACCTTTGGCAAAG+GGG | - | chr5_1:65289459-65289478 | None:intergenic | 40.0% | |
| !! | TTATTCAGGTTGGGAAGTGT+TGG | - | chr5_1:65292380-65292399 | None:intergenic | 40.0% |
| TCCCTTGAGAGAAGTTATTC+AGG | - | chr5_1:65292394-65292413 | None:intergenic | 40.0% | |
| ! | AGGGATTGAGTTTAAGACTC+TGG | + | chr5_1:65292409-65292428 | Msa0744490:intron | 40.0% |
| ACACAAGGATCATGCATCAT+TGG | + | chr5_1:65292616-65292635 | Msa0744490:intron | 40.0% | |
| !! | TTCATGAGTTTTAGCCGTGT+TGG | + | chr5_1:65292788-65292807 | Msa0744490:intron | 40.0% |
| GATATTACACCGATCCAACA+CGG | - | chr5_1:65292805-65292824 | None:intergenic | 40.0% | |
| TGAAGTCAAGTGCATAGCTG+TGG | - | chr5_1:65287321-65287340 | None:intergenic | 45.0% | |
| TTCAAGGCCTGGTGAATCTT+AGG | + | chr5_1:65287534-65287553 | Msa0744490:intron | 45.0% | |
| TCAAGGCCTGGTGAATCTTA+GGG | + | chr5_1:65287535-65287554 | Msa0744490:intron | 45.0% | |
| TTCCTTAACCAATGTCCCAG+GGG | - | chr5_1:65287882-65287901 | None:intergenic | 45.0% | |
| GATTCCTTAACCAATGTCCC+AGG | - | chr5_1:65287884-65287903 | None:intergenic | 45.0% | |
| !! | AATGCTAAAGAGTACCCCAG+CGG | - | chr5_1:65288016-65288035 | None:intergenic | 45.0% |
| ! | GATGAGAGAGTGTGATGCTT+AGG | - | chr5_1:65288059-65288078 | None:intergenic | 45.0% |
| ! | CATTTTACAAGCGTCCCAGA+GGG | + | chr5_1:65288119-65288138 | Msa0744490:intron | 45.0% |
| ! | ATTTTACAAGCGTCCCAGAG+GGG | + | chr5_1:65288120-65288139 | Msa0744490:intron | 45.0% |
| CTAGGATCTTCAACTGAGGT+AGG | - | chr5_1:65288579-65288598 | None:intergenic | 45.0% | |
| CATCACACTGTAATGCGACT+AGG | - | chr5_1:65288597-65288616 | None:intergenic | 45.0% | |
| CTAGTCGCATTACAGTGTGA+TGG | + | chr5_1:65288595-65288614 | Msa0744490:CDS | 45.0% | |
| !! | CGCATTACAGTGTGATGGAT+TGG | + | chr5_1:65288600-65288619 | Msa0744490:CDS | 45.0% |
| CTTCCTGTTGGAACTTGTGT+TGG | + | chr5_1:65288877-65288896 | Msa0744490:intron | 45.0% | |
| TCCTGTTGGAACTTGTGTTG+GGG | + | chr5_1:65288879-65288898 | Msa0744490:intron | 45.0% | |
| TGGTTGTGCAATACACGTCA+AGG | - | chr5_1:65289168-65289187 | None:intergenic | 45.0% | |
| CTTGGCATTTGGGCATTAGT+TGG | - | chr5_1:65289356-65289375 | None:intergenic | 45.0% | |
| ATTAAGCACCCCTTTGCCAA+AGG | + | chr5_1:65289448-65289467 | Msa0744490:intron | 45.0% | |
| ! | TGAAAATGGTGGGGGATTGT+TGG | - | chr5_1:65289669-65289688 | None:intergenic | 45.0% |
| CGCGAGATACCATTATCTGA+AGG | - | chr5_1:65289726-65289745 | None:intergenic | 45.0% | |
| AATGAAGTTTGGCCGCTTCA+CGG | - | chr5_1:65289960-65289979 | None:intergenic | 45.0% | |
| ! | TCCAAGTACTTTTGCCCCTT+GGG | + | chr5_1:65290090-65290109 | Msa0744490:intron | 45.0% |
| GCATCAAGTCTTGGGTTCAA+TGG | - | chr5_1:65290164-65290183 | None:intergenic | 45.0% | |
| GACTTGATGCTACTCAAGTG+TGG | + | chr5_1:65290174-65290193 | Msa0744490:intron | 45.0% | |
| TTTACCGTTCACCGTAGTCA+TGG | + | chr5_1:65291449-65291468 | Msa0744490:intron | 45.0% | |
| TCATCCATGACTACGGTGAA+CGG | - | chr5_1:65291456-65291475 | None:intergenic | 45.0% | |
| TGGTTGTGCAATACACGTCA+AGG | - | chr5_1:65289168-65289187 | None:intergenic | 45.0% | |
| CTTGGCATTTGGGCATTTGT+TGG | - | chr5_1:65292023-65292042 | None:intergenic | 45.0% | |
| ATTAAGCACCCCTTTGCCAA+AGG | + | chr5_1:65289448-65289467 | Msa0744490:intron | 45.0% | |
| !! | GAGTTTTAGCCGTGTTGGAT+CGG | + | chr5_1:65292793-65292812 | Msa0744490:intron | 45.0% |
| GTCAAGTGCATAGCTGTGGA+TGG | - | chr5_1:65287317-65287336 | None:intergenic | 50.0% | |
| !! | GGTTTCTTCAGCATCGACCA+CGG | + | chr5_1:65287784-65287803 | Msa0744490:intron | 50.0% |
| AAGGAGACAGAACTGTACCG+TGG | - | chr5_1:65287804-65287823 | None:intergenic | 50.0% | |
| TCCTTAACCAATGTCCCAGG+GGG | - | chr5_1:65287881-65287900 | None:intergenic | 50.0% | |
| AGATGCTTAACCAATGCCGC+TGG | + | chr5_1:65287997-65288016 | Msa0744490:intron | 50.0% | |
| GATGCTTAACCAATGCCGCT+GGG | + | chr5_1:65287998-65288017 | Msa0744490:intron | 50.0% | |
| ATGCTTAACCAATGCCGCTG+GGG | + | chr5_1:65287999-65288018 | Msa0744490:intron | 50.0% | |
| !! | CCTCTGGGACGCTTGTAAAA+TGG | - | chr5_1:65288121-65288140 | None:intergenic | 50.0% |
| ! | CCATTTTACAAGCGTCCCAG+AGG | + | chr5_1:65288118-65288137 | Msa0744490:intron | 50.0% |
| CCTTATAACCTCTCCCCTCT+GGG | - | chr5_1:65288136-65288155 | None:intergenic | 50.0% | |
| ! | CAGATCACGAGGTGTTAGCT+CGG | - | chr5_1:65288173-65288192 | None:intergenic | 50.0% |
| GTTGCTTGCCGTACGTTCAT+TGG | - | chr5_1:65288400-65288419 | None:intergenic | 50.0% | |
| ACGTACGGCAAGCAACTTCA+TGG | + | chr5_1:65288404-65288423 | Msa0744490:CDS | 50.0% | |
| GCGACTAGGATCTTCAACTG+AGG | - | chr5_1:65288583-65288602 | None:intergenic | 50.0% | |
| GGGGTGCAGAGAAATAGAAC+AGG | - | chr5_1:65288720-65288739 | None:intergenic | 50.0% | |
| TCCAGTTCAGGAAACTCGTG+GGG | - | chr5_1:65288739-65288758 | None:intergenic | 50.0% | |
| CTCCAGTTCAGGAAACTCGT+GGG | - | chr5_1:65288740-65288759 | None:intergenic | 50.0% | |
| ACTCCAGTTCAGGAAACTCG+TGG | - | chr5_1:65288741-65288760 | None:intergenic | 50.0% | |
| AGGTGTGAGAGAAGACGATG+TGG | + | chr5_1:65288813-65288832 | Msa0744490:intron | 50.0% | |
| TGTGAGAGAAGACGATGTGG+AGG | + | chr5_1:65288816-65288835 | Msa0744490:intron | 50.0% | |
| CCTGTTGGAACTTGTGTTGG+GGG | + | chr5_1:65288880-65288899 | Msa0744490:intron | 50.0% | |
| ! | GTTAGGAGATACGCTTGGTG+TGG | - | chr5_1:65289188-65289207 | None:intergenic | 50.0% |
| AACCCTTGAACTCCGTGAAG+CGG | + | chr5_1:65289945-65289964 | Msa0744490:intron | 50.0% | |
| ! | GTCCAAGTACTTTTGCCCCT+TGG | + | chr5_1:65290089-65290108 | Msa0744490:intron | 50.0% |
| !! | TCCCAAGGGGCAAAAGTACT+TGG | - | chr5_1:65290094-65290113 | None:intergenic | 50.0% |
| ! | GTGGGTTGAGTTTCCACCAT+TGG | + | chr5_1:65290193-65290212 | Msa0744490:intron | 50.0% |
| ! | GTTAGGAGATACGCTTGGTG+TGG | - | chr5_1:65289188-65289207 | None:intergenic | 50.0% |
| AAGAGCTCGTGTCTATGGCA+GGG | - | chr5_1:65292748-65292767 | None:intergenic | 50.0% | |
| TGGACAAGAGCTCGTGTCTA+TGG | - | chr5_1:65292753-65292772 | None:intergenic | 50.0% | |
| TCTTGCTAACCAGTCCCCCT+GGG | + | chr5_1:65287864-65287883 | Msa0744490:intron | 55.0% | |
| ! | TCCCCCTGGGACATTGGTTA+AGG | + | chr5_1:65287877-65287896 | Msa0744490:intron | 55.0% |
| !! | AAAGAGTACCCCAGCGGCAT+TGG | - | chr5_1:65288010-65288029 | None:intergenic | 55.0% |
| CCCAGAGGGGAGAGGTTATA+AGG | + | chr5_1:65288133-65288152 | Msa0744490:intron | 55.0% | |
| GCCTTATAACCTCTCCCCTC+TGG | - | chr5_1:65288137-65288156 | None:intergenic | 55.0% | |
| AGCGACTGCAGACGAGAAGA+TGG | - | chr5_1:65288551-65288570 | None:intergenic | 55.0% | |
| ACCCCACGAGTTTCCTGAAC+TGG | + | chr5_1:65288735-65288754 | Msa0744490:CDS | 55.0% | |
| CCCCCAACACAAGTTCCAAC+AGG | - | chr5_1:65288883-65288902 | None:intergenic | 55.0% | |
| TGGGGGCGAATCGAACCTAA+AGG | - | chr5_1:65289080-65289099 | None:intergenic | 55.0% | |
| GTATCCTGAAGGGGATTCGC+CGG | - | chr5_1:65289137-65289156 | None:intergenic | 55.0% | |
| TGGGGGCGAATCGAACCTAA+AGG | - | chr5_1:65289080-65289099 | None:intergenic | 55.0% | |
| GTATCCTGAAGGGGATTCGC+CGG | - | chr5_1:65289137-65289156 | None:intergenic | 55.0% | |
| CAAGAGCTCGTGTCTATGGC+AGG | - | chr5_1:65292749-65292768 | None:intergenic | 55.0% | |
| GTCTTGCTAACCAGTCCCCC+TGG | + | chr5_1:65287863-65287882 | Msa0744490:intron | 60.0% | |
| AACCAGTCCCCCTGGGACAT+TGG | + | chr5_1:65287871-65287890 | Msa0744490:intron | 60.0% | |
| AACCAATGTCCCAGGGGGAC+TGG | - | chr5_1:65287876-65287895 | None:intergenic | 60.0% | |
| ATGACCGGCGAATCCCCTTC+AGG | + | chr5_1:65289130-65289149 | Msa0744490:intron | 60.0% | |
| GGCCGCTTCACGGAGTTCAA+GGG | - | chr5_1:65289950-65289969 | None:intergenic | 60.0% | |
| TGGCCGCTTCACGGAGTTCA+AGG | - | chr5_1:65289951-65289970 | None:intergenic | 60.0% | |
| ATGACCGGCGAATCCCCTTC+AGG | + | chr5_1:65289130-65289149 | Msa0744490:intron | 60.0% | |
| ACAAGCGTCCCAGAGGGGAG+AGG | + | chr5_1:65288125-65288144 | Msa0744490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 65287293 | 65292885 | 65287293 | ID=Msa0744490;Name=Msa0744490 |
| chr5_1 | mRNA | 65287293 | 65292885 | 65287293 | ID=Msa0744490-mRNA-1;Parent=Msa0744490;Name=Msa0744490-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.8|0.25|0|5|0|308 |
| chr5_1 | exon | 65287293 | 65287479 | 65287293 | ID=Msa0744490-mRNA-1:exon:19411;Parent=Msa0744490-mRNA-1 |
| chr5_1 | exon | 65287540 | 65287784 | 65287540 | ID=Msa0744490-mRNA-1:exon:19412;Parent=Msa0744490-mRNA-1 |
| chr5_1 | exon | 65288298 | 65288529 | 65288298 | ID=Msa0744490-mRNA-1:exon:19413;Parent=Msa0744490-mRNA-1 |
| chr5_1 | exon | 65288566 | 65288814 | 65288566 | ID=Msa0744490-mRNA-1:exon:19414;Parent=Msa0744490-mRNA-1 |
| chr5_1 | exon | 65292872 | 65292885 | 65292872 | ID=Msa0744490-mRNA-1:exon:19415;Parent=Msa0744490-mRNA-1 |
| chr5_1 | CDS | 65287293 | 65287479 | 65287293 | ID=Msa0744490-mRNA-1:cds;Parent=Msa0744490-mRNA-1 |
| chr5_1 | CDS | 65287540 | 65287784 | 65287540 | ID=Msa0744490-mRNA-1:cds;Parent=Msa0744490-mRNA-1 |
| chr5_1 | CDS | 65288298 | 65288529 | 65288298 | ID=Msa0744490-mRNA-1:cds;Parent=Msa0744490-mRNA-1 |
| chr5_1 | CDS | 65288566 | 65288814 | 65288566 | ID=Msa0744490-mRNA-1:cds;Parent=Msa0744490-mRNA-1 |
| chr5_1 | CDS | 65292872 | 65292885 | 65292872 | ID=Msa0744490-mRNA-1:cds;Parent=Msa0744490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
