Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760410 | sp|Q07185|AOX1_SOYBN | 87.435 | 191 | 12 | 1 | 1 | 179 | 122 | 312 | 1.31e-119 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760410 | S5FNL5 | 92.147 | 191 | 3 | 1 | 1 | 179 | 136 | 326 | 9.91e-124 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020410 | Msa0760410 | 0.808309 | 3.299881e-50 | -8.615850e-47 |
| Msa0026910 | Msa0760410 | 0.803954 | 2.724282e-49 | -8.615850e-47 |
| Msa0042920 | Msa0760410 | 0.806614 | 7.551056e-50 | -8.615850e-47 |
| Msa0043980 | Msa0760410 | 0.800966 | 1.124764e-48 | -8.615850e-47 |
| Msa0620960 | Msa0760410 | 0.806415 | 8.319178e-50 | -8.615850e-47 |
| Msa0760410 | Msa0768370 | 0.804923 | 1.711304e-49 | -8.615850e-47 |
| Msa0760410 | Msa0831850 | 0.807431 | 5.070829e-50 | -8.615850e-47 |
| Msa0760410 | Msa0832340 | 0.809309 | 2.016685e-50 | -8.615850e-47 |
| Msa0760410 | Msa0844490 | 0.811234 | 7.751957e-51 | -8.615850e-47 |
| Msa0760410 | Msa0849030 | 0.803976 | 2.695864e-49 | -8.615850e-47 |
| Msa0760410 | Msa0899450 | 0.805268 | 1.448677e-49 | -8.615850e-47 |
| Msa0760410 | Msa0921420 | 0.803835 | 2.883463e-49 | -8.615850e-47 |
| Msa0760410 | Msa0927380 | 0.809600 | 1.746648e-50 | -8.615850e-47 |
| Msa0760410 | Msa0964900 | 0.803059 | 4.176679e-49 | -8.615850e-47 |
| Msa0760410 | Msa0999220 | 0.800650 | 1.304693e-48 | -8.615850e-47 |
| Msa0760410 | Msa1075650 | 0.806746 | 7.082926e-50 | -8.615850e-47 |
| Msa0760410 | Msa1107260 | 0.832329 | 1.005700e-55 | -8.615850e-47 |
| Msa0760410 | Msa1109680 | 0.800760 | 1.239101e-48 | -8.615850e-47 |
| Msa0760410 | Msa1121490 | 0.806178 | 9.329559e-50 | -8.615850e-47 |
| Msa0760410 | Msa1150900 | 0.811431 | 7.024483e-51 | -8.615850e-47 |
| Msa0760410 | Msa1427230 | 0.816885 | 4.391401e-52 | -8.615850e-47 |
| Msa0760410 | Msa1460800 | 0.800887 | 1.167074e-48 | -8.615850e-47 |
| Msa0760410 | Msa1460830 | 0.809201 | 2.126744e-50 | -8.615850e-47 |
| Msa0760410 | Msa1466540 | 0.801017 | 1.097717e-48 | -8.615850e-47 |
| Msa0145190 | Msa0760410 | 0.813738 | 2.198308e-51 | -8.615850e-47 |
| Msa0194440 | Msa0760410 | 0.840855 | 6.759891e-58 | -8.615850e-47 |
| Msa0218370 | Msa0760410 | 0.813842 | 2.085728e-51 | -8.615850e-47 |
| Msa0223010 | Msa0760410 | 0.812627 | 3.854332e-51 | -8.615850e-47 |
| Msa0455760 | Msa0760410 | 0.808048 | 3.750674e-50 | -8.615850e-47 |
| Msa0281930 | Msa0760410 | 0.802936 | 4.428526e-49 | -8.615850e-47 |
| Msa0307540 | Msa0760410 | 0.809083 | 2.254490e-50 | -8.615850e-47 |
| Msa0319170 | Msa0760410 | 0.800912 | 1.153339e-48 | -8.615850e-47 |
| Msa0326110 | Msa0760410 | 0.814229 | 1.713721e-51 | -8.615850e-47 |
| Msa0339620 | Msa0760410 | 0.800013 | 1.758580e-48 | -8.615850e-47 |
| Msa0594560 | Msa0760410 | 0.807780 | 4.276421e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760410 | MtrunA17_Chr5g0409121 | 90.576 | 191 | 6 | 1 | 1 | 179 | 131 | 321 | 2.34e-125 | 357 |
| Msa0760410 | MtrunA17_Chr4g0050421 | 73.298 | 191 | 39 | 1 | 1 | 179 | 146 | 336 | 3.60e-102 | 298 |
| Msa0760410 | MtrunA17_Chr5g0430011 | 68.449 | 187 | 47 | 1 | 5 | 179 | 129 | 315 | 8.83e-93 | 273 |
| Msa0760410 | MtrunA17_Chr5g0430001 | 65.969 | 191 | 53 | 1 | 1 | 179 | 124 | 314 | 6.08e-91 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760410 | AT3G22370.1 | 86.911 | 191 | 13 | 1 | 1 | 179 | 155 | 345 | 3.09e-120 | 345 |
| Msa0760410 | AT3G22360.1 | 84.293 | 191 | 18 | 1 | 1 | 179 | 126 | 316 | 2.38e-116 | 334 |
| Msa0760410 | AT3G27620.1 | 82.199 | 191 | 22 | 1 | 1 | 179 | 130 | 320 | 1.22e-112 | 325 |
| Msa0760410 | AT5G64210.1 | 74.346 | 191 | 37 | 1 | 1 | 179 | 154 | 344 | 9.83e-102 | 298 |
| Msa0760410 | AT1G32350.1 | 68.586 | 191 | 48 | 1 | 1 | 179 | 119 | 309 | 8.72e-98 | 286 |
| Msa0760410 | AT1G32350.2 | 69.613 | 181 | 43 | 1 | 1 | 169 | 119 | 299 | 5.38e-93 | 274 |
Find 51 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCATACGGTGTGCAAATT+TGG | 0.112313 | 5_2:+16861127 | None:intergenic |
| ACCAATCTGTTGGCCTATTT+TGG | 0.146207 | 5_2:-16860343 | Msa0760410:CDS |
| TTCCCCAAAACTCTACTTTA+AGG | 0.165997 | 5_2:-16860992 | Msa0760410:CDS |
| TTCTGGACAAGATGGTTTAT+TGG | 0.235454 | 5_2:-16862268 | Msa0760410:exon |
| AAATGCTGAAGTCAATATTT+TGG | 0.237173 | 5_2:-16860296 | Msa0760410:three_prime_UTR |
| CATCCCTTAAAGTAGAGTTT+TGG | 0.284733 | 5_2:+16860988 | None:intergenic |
| CAGTTCACCACCACCAAAAT+AGG | 0.288261 | 5_2:+16860330 | None:intergenic |
| ATTGGACTGTTAAGAGTCTT+AGG | 0.314265 | 5_2:-16862250 | Msa0760410:CDS |
| TTTCTCAAGGAACTTGATAA+AGG | 0.335708 | 5_2:-16861065 | Msa0760410:CDS |
| CCACTTCCATGAAAGTCATT+AGG | 0.338652 | 5_2:+16861244 | None:intergenic |
| ATGATGCCAATGTATAAAAC+AGG | 0.353168 | 5_2:-16860210 | None:intergenic |
| CAGCTATTGCTATTGACTAT+TGG | 0.356927 | 5_2:-16861019 | Msa0760410:CDS |
| CATGCACCTAATGACTTTCA+TGG | 0.370912 | 5_2:-16861250 | Msa0760410:CDS |
| ACCATACGGTGTGCAAATTT+GGG | 0.381391 | 5_2:+16861128 | None:intergenic |
| TCCCCAAAACTCTACTTTAA+GGG | 0.386600 | 5_2:-16860991 | Msa0760410:CDS |
| ATCTGCGGATTGTCAACCTT+TGG | 0.415965 | 5_2:+16862331 | None:intergenic |
| AAGGAGGCTGCTGCTCCAAT+TGG | 0.436968 | 5_2:-16860378 | Msa0760410:CDS |
| ATCTTGTCCAGAAAAGTTGT+TGG | 0.458551 | 5_2:+16862278 | None:intergenic |
| GGTATCTAGTGATAACCAAT+TGG | 0.473206 | 5_2:+16860363 | None:intergenic |
| GCCTCCTTAACTCTCGTCCT+TGG | 0.492442 | 5_2:+16860393 | None:intergenic |
| AGCATTCCTCCTACCATACC+AGG | 0.499814 | 5_2:+16861354 | None:intergenic |
| TACTTTAAGGGATGTTGTAG+AGG | 0.505163 | 5_2:-16860979 | Msa0760410:CDS |
| GAGACAGTAGCTGCTGTCCC+TGG | 0.507998 | 5_2:-16861372 | Msa0760410:CDS |
| ATCCACCACTGTGCTCGAAT+CGG | 0.508390 | 5_2:+16861310 | None:intergenic |
| ATTACCAAGGACGAGAGTTA+AGG | 0.509475 | 5_2:-16860397 | Msa0760410:CDS |
| ACCCAAATTTGCACACCGTA+TGG | 0.511597 | 5_2:-16861129 | Msa0760410:CDS |
| CCTAATGACTTTCATGGAAG+TGG | 0.513462 | 5_2:-16861244 | Msa0760410:CDS |
| ACCAAAATAGGCCAACAGAT+TGG | 0.521985 | 5_2:+16860342 | None:intergenic |
| CAATTGAAACAGAGAAGGTA+TGG | 0.534923 | 5_2:-16861414 | Msa0760410:intron |
| AGTAGCTGCTGTCCCTGGTA+TGG | 0.538754 | 5_2:-16861367 | Msa0760410:CDS |
| AGTGCACGCTCATACCACTT+TGG | 0.545912 | 5_2:+16861216 | None:intergenic |
| TCAATAGCAATAGCTGGAGC+AGG | 0.548905 | 5_2:+16861026 | None:intergenic |
| ATCACTAGATACCAATCTGT+TGG | 0.557864 | 5_2:-16860353 | Msa0760410:CDS |
| CTGTCTCAAGCATCATTGCT+CGG | 0.558637 | 5_2:+16861388 | None:intergenic |
| GCTGCTGTCCCTGGTATGGT+AGG | 0.561437 | 5_2:-16861363 | Msa0760410:CDS |
| CGCCGATTCGAGCACAGTGG+TGG | 0.562853 | 5_2:-16861312 | Msa0760410:CDS |
| AAATTTGCACACCGTATGGT+TGG | 0.563076 | 5_2:-16861125 | Msa0760410:CDS |
| CTCATACACTGAGTTTCTCA+AGG | 0.566793 | 5_2:-16861078 | Msa0760410:CDS |
| CAATAGTCAATAGCAATAGC+TGG | 0.570433 | 5_2:+16861020 | None:intergenic |
| GATTCGAGCACAGTGGTGGA+TGG | 0.584320 | 5_2:-16861308 | Msa0760410:CDS |
| GCTGTCCCTGGTATGGTAGG+AGG | 0.587252 | 5_2:-16861360 | Msa0760410:CDS |
| AGTGAATAGCTTCTTCCTCA+AGG | 0.587319 | 5_2:+16861099 | None:intergenic |
| CGATGTTAACTACTTTGCAT+CGG | 0.617007 | 5_2:-16860928 | Msa0760410:intron |
| CCTCAAGGTAACCAACCATA+CGG | 0.624191 | 5_2:+16861114 | None:intergenic |
| ACCAAGGACGAGAGTTAAGG+AGG | 0.629897 | 5_2:-16860394 | Msa0760410:CDS |
| CAGATCAATCGTAACATCTG+CGG | 0.647580 | 5_2:+16862316 | None:intergenic |
| CCGTATGGTTGGTTACCTTG+AGG | 0.649479 | 5_2:-16861114 | Msa0760410:CDS |
| TGGAAGTGGCAAAACCAAAG+TGG | 0.670752 | 5_2:-16861230 | Msa0760410:CDS |
| TTGTAGGATATACATTACCA+AGG | 0.712776 | 5_2:-16860410 | Msa0760410:intron |
| GCATTCCTCCTACCATACCA+GGG | 0.715449 | 5_2:+16861355 | None:intergenic |
| TTGCGCCGATTCGAGCACAG+TGG | 0.770199 | 5_2:-16861315 | Msa0760410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTATTATTAAAATCC+GGG | - | chr5_2:16860424-16860443 | Msa0760410:intron | 10.0% |
| !!! | TTTTTGTTAATTTTTTTCAA+AGG | + | chr5_2:16860551-16860570 | None:intergenic | 10.0% |
| !! | GAAAAAAATTAACAAAAAAA+TGG | - | chr5_2:16860553-16860572 | Msa0760410:intron | 10.0% |
| !! | TATTATTATTATTAAAATCC+GGG | - | chr5_2:16860424-16860443 | Msa0760410:intron | 10.0% |
| !!! | TTTTTGTTAATTTTTTTCAA+AGG | + | chr5_2:16860551-16860570 | None:intergenic | 10.0% |
| !! | GAAAAAAATTAACAAAAAAA+TGG | - | chr5_2:16860553-16860572 | Msa0760410:intron | 10.0% |
| !! | AAACCTAATTAAAAATATGA+TGG | + | chr5_2:16860774-16860793 | None:intergenic | 15.0% |
| !! | AAACTTTGAACATAATTTAT+AGG | + | chr5_2:16861085-16861104 | None:intergenic | 15.0% |
| !!! | ATTAGTATTAGTTGTTTTAT+TGG | - | chr5_2:16862338-16862357 | Msa0760410:five_prime_UTR | 15.0% |
| !! | AAACCTAATTAAAAATATGA+TGG | + | chr5_2:16860774-16860793 | None:intergenic | 15.0% |
| !! | AAACTTTGAACATAATTTAT+AGG | + | chr5_2:16861085-16861104 | None:intergenic | 15.0% |
| !!! | ATTAGTATTAGTTGTTTTAT+TGG | - | chr5_2:16862338-16862357 | Msa0760410:five_prime_UTR | 15.0% |
| !!! | TTTTTTAGCATTAATTCCAA+AGG | - | chr5_2:16860232-16860251 | Msa0760410:three_prime_UTR | 20.0% |
| !!! | TTGTTAATTTTTTTCAAAGG+AGG | + | chr5_2:16860548-16860567 | None:intergenic | 20.0% |
| !!! | TTAACAAAAAAATGGATTTC+AGG | - | chr5_2:16860561-16860580 | Msa0760410:intron | 20.0% |
| !!! | TGGTGTGATTATTTATTTTA+TGG | - | chr5_2:16860590-16860609 | Msa0760410:intron | 20.0% |
| !!! | TGATTATTTATTTTATGGTC+AGG | - | chr5_2:16860595-16860614 | Msa0760410:intron | 20.0% |
| !!! | GATTATTTATTTTATGGTCA+GGG | - | chr5_2:16860596-16860615 | Msa0760410:intron | 20.0% |
| !! | TTATGCATGATTGAATATTT+AGG | + | chr5_2:16860806-16860825 | None:intergenic | 20.0% |
| !! | TACATAAAATACTTTCATCT+TGG | + | chr5_2:16861124-16861143 | None:intergenic | 20.0% |
| !! | AAAAATAAAAAGACAGATCA+TGG | + | chr5_2:16861924-16861943 | None:intergenic | 20.0% |
| !! | AAATCAAGTACATTTATGTT+TGG | + | chr5_2:16861947-16861966 | None:intergenic | 20.0% |
| !! | TCTTTATACATTCAAAATCA+TGG | - | chr5_2:16862026-16862045 | Msa0760410:intron | 20.0% |
| !!! | TTTTTTAGCATTAATTCCAA+AGG | - | chr5_2:16860232-16860251 | Msa0760410:three_prime_UTR | 20.0% |
| !!! | TTGTTAATTTTTTTCAAAGG+AGG | + | chr5_2:16860548-16860567 | None:intergenic | 20.0% |
| !!! | TTAACAAAAAAATGGATTTC+AGG | - | chr5_2:16860561-16860580 | Msa0760410:intron | 20.0% |
| !!! | TGGTGTGATTATTTATTTTA+TGG | - | chr5_2:16860590-16860609 | Msa0760410:intron | 20.0% |
| !!! | TGATTATTTATTTTATGGTC+AGG | - | chr5_2:16860595-16860614 | Msa0760410:intron | 20.0% |
| !!! | GATTATTTATTTTATGGTCA+GGG | - | chr5_2:16860596-16860615 | Msa0760410:intron | 20.0% |
| !! | TTATGCATGATTGAATATTT+AGG | + | chr5_2:16860806-16860825 | None:intergenic | 20.0% |
| !! | TACATAAAATACTTTCATCT+TGG | + | chr5_2:16861124-16861143 | None:intergenic | 20.0% |
| !! | AAAAATAAAAAGACAGATCA+TGG | + | chr5_2:16861924-16861943 | None:intergenic | 20.0% |
| !! | AAATCAAGTACATTTATGTT+TGG | + | chr5_2:16861947-16861966 | None:intergenic | 20.0% |
| !! | TCTTTATACATTCAAAATCA+TGG | - | chr5_2:16862026-16862045 | Msa0760410:intron | 20.0% |
| !!! | AATTTTTTTCAAAGGAGGTA+AGG | + | chr5_2:16860543-16860562 | None:intergenic | 25.0% |
| !!! | CTTAAACAAAAGTACCTTAA+AGG | + | chr5_2:16860747-16860766 | None:intergenic | 25.0% |
| !!! | CTTTAAGGTACTTTTGTTTA+AGG | - | chr5_2:16860745-16860764 | Msa0760410:intron | 25.0% |
| ! | CCTAATTAAAAATATGATGG+CGG | + | chr5_2:16860771-16860790 | None:intergenic | 25.0% |
| ! | GACTATATGCTATAAAACAT+TGG | + | chr5_2:16860923-16860942 | None:intergenic | 25.0% |
| !!! | GTGGATTTTTTCAAAACAAA+AGG | + | chr5_2:16860974-16860993 | None:intergenic | 25.0% |
| !!! | AGATGATGTTTTTTACCTTT+TGG | - | chr5_2:16860998-16861017 | Msa0760410:CDS | 25.0% |
| ! | GAAATTTCATTCAAACCAAA+AGG | + | chr5_2:16861016-16861035 | None:intergenic | 25.0% |
| !! | TTCTTCAATGCTTATTTCTT+AGG | - | chr5_2:16861415-16861434 | Msa0760410:intron | 25.0% |
| !!! | AGTTTTTCAACAGAAACTAA+TGG | - | chr5_2:16861798-16861817 | Msa0760410:intron | 25.0% |
| !! | AAATGCTGAAGTCAATATTT+TGG | - | chr5_2:16862283-16862302 | Msa0760410:five_prime_UTR | 25.0% |
| !!! | AATTTTTTTCAAAGGAGGTA+AGG | + | chr5_2:16860543-16860562 | None:intergenic | 25.0% |
| !!! | CTTAAACAAAAGTACCTTAA+AGG | + | chr5_2:16860747-16860766 | None:intergenic | 25.0% |
| !!! | CTTTAAGGTACTTTTGTTTA+AGG | - | chr5_2:16860745-16860764 | Msa0760410:intron | 25.0% |
| ! | CCTAATTAAAAATATGATGG+CGG | + | chr5_2:16860771-16860790 | None:intergenic | 25.0% |
| ! | GACTATATGCTATAAAACAT+TGG | + | chr5_2:16860923-16860942 | None:intergenic | 25.0% |
| !!! | GTGGATTTTTTCAAAACAAA+AGG | + | chr5_2:16860974-16860993 | None:intergenic | 25.0% |
| !!! | AGATGATGTTTTTTACCTTT+TGG | - | chr5_2:16860998-16861017 | Msa0760410:CDS | 25.0% |
| ! | GAAATTTCATTCAAACCAAA+AGG | + | chr5_2:16861016-16861035 | None:intergenic | 25.0% |
| !! | TTCTTCAATGCTTATTTCTT+AGG | - | chr5_2:16861415-16861434 | Msa0760410:intron | 25.0% |
| !!! | AGTTTTTCAACAGAAACTAA+TGG | - | chr5_2:16861798-16861817 | Msa0760410:intron | 25.0% |
| !! | AAATGCTGAAGTCAATATTT+TGG | - | chr5_2:16862283-16862302 | Msa0760410:five_prime_UTR | 25.0% |
| ! | TCATAAACCAACAACTTTTC+TGG | - | chr5_2:16860294-16860313 | Msa0760410:three_prime_UTR | 30.0% |
| TATTATTAAAATCCGGGTTC+TGG | - | chr5_2:16860430-16860449 | Msa0760410:intron | 30.0% | |
| CTCTTCTAATAAAGATTCGA+TGG | + | chr5_2:16860508-16860527 | None:intergenic | 30.0% | |
| CATCGAATCTTTATTAGAAG+AGG | - | chr5_2:16860506-16860525 | Msa0760410:intron | 30.0% | |
| ! | AAATGGATTTCAGGAATTAC+TGG | - | chr5_2:16860570-16860589 | Msa0760410:intron | 30.0% |
| !! | CCGCCATCATATTTTTAATT+AGG | - | chr5_2:16860768-16860787 | Msa0760410:intron | 30.0% |
| TGAACTAGAACTTACATGAA+AGG | - | chr5_2:16860880-16860899 | Msa0760410:intron | 30.0% | |
| GAACTAGAACTTACATGAAA+GGG | - | chr5_2:16860881-16860900 | Msa0760410:intron | 30.0% | |
| AACTAGAACTTACATGAAAG+GGG | - | chr5_2:16860882-16860901 | Msa0760410:intron | 30.0% | |
| ! | AACAAAAGGTCATCATTTTG+TGG | + | chr5_2:16860960-16860979 | None:intergenic | 30.0% |
| TAAAAAACATCATCTTGTGG+TGG | + | chr5_2:16860993-16861012 | None:intergenic | 30.0% | |
| AGGTAAAAAACATCATCTTG+TGG | + | chr5_2:16860996-16861015 | None:intergenic | 30.0% | |
| TAGGATAGTAAGTTCATCAA+GGG | + | chr5_2:16861066-16861085 | None:intergenic | 30.0% | |
| ATAGGATAGTAAGTTCATCA+AGG | + | chr5_2:16861067-16861086 | None:intergenic | 30.0% | |
| GTATTCAATTGAAACAGAGA+AGG | - | chr5_2:16861160-16861179 | Msa0760410:intron | 30.0% | |
| TTTCTCAAGGAACTTGATAA+AGG | - | chr5_2:16861514-16861533 | Msa0760410:intron | 30.0% | |
| ! | ATCCCTTAAAGTAGAGTTTT+GGG | + | chr5_2:16861593-16861612 | None:intergenic | 30.0% |
| TGATCAAGTAAACTTGTGTA+AGG | - | chr5_2:16861745-16861764 | Msa0760410:intron | 30.0% | |
| GTTTCTGTTGAAAAACTGAT+AGG | + | chr5_2:16861795-16861814 | None:intergenic | 30.0% | |
| ! | TTTGTAGCTTTGCAAATTCA+CGG | + | chr5_2:16861877-16861896 | None:intergenic | 30.0% |
| TTTCATGTGAGTATGTTGAA+TGG | - | chr5_2:16862110-16862129 | Msa0760410:intron | 30.0% | |
| TTCATGTGAGTATGTTGAAT+GGG | - | chr5_2:16862111-16862130 | Msa0760410:intron | 30.0% | |
| !!! | GAGTACTGATTATATTTTGC+TGG | - | chr5_2:16862140-16862159 | Msa0760410:intron | 30.0% |
| ! | ATTTTGCTGGAATGAATTGT+AGG | - | chr5_2:16862153-16862172 | Msa0760410:intron | 30.0% |
| TTGTAGGATATACATTACCA+AGG | - | chr5_2:16862169-16862188 | Msa0760410:intron | 30.0% | |
| AAAGTTGAATTGAGACCTTT+AGG | + | chr5_2:16860215-16860234 | None:intergenic | 30.0% | |
| ! | TCATAAACCAACAACTTTTC+TGG | - | chr5_2:16860294-16860313 | Msa0760410:three_prime_UTR | 30.0% |
| TATTATTAAAATCCGGGTTC+TGG | - | chr5_2:16860430-16860449 | Msa0760410:intron | 30.0% | |
| CTCTTCTAATAAAGATTCGA+TGG | + | chr5_2:16860508-16860527 | None:intergenic | 30.0% | |
| CATCGAATCTTTATTAGAAG+AGG | - | chr5_2:16860506-16860525 | Msa0760410:intron | 30.0% | |
| ! | AAATGGATTTCAGGAATTAC+TGG | - | chr5_2:16860570-16860589 | Msa0760410:intron | 30.0% |
| !! | CCGCCATCATATTTTTAATT+AGG | - | chr5_2:16860768-16860787 | Msa0760410:intron | 30.0% |
| TGAACTAGAACTTACATGAA+AGG | - | chr5_2:16860880-16860899 | Msa0760410:intron | 30.0% | |
| GAACTAGAACTTACATGAAA+GGG | - | chr5_2:16860881-16860900 | Msa0760410:intron | 30.0% | |
| AACTAGAACTTACATGAAAG+GGG | - | chr5_2:16860882-16860901 | Msa0760410:intron | 30.0% | |
| ! | AACAAAAGGTCATCATTTTG+TGG | + | chr5_2:16860960-16860979 | None:intergenic | 30.0% |
| TAAAAAACATCATCTTGTGG+TGG | + | chr5_2:16860993-16861012 | None:intergenic | 30.0% | |
| AGGTAAAAAACATCATCTTG+TGG | + | chr5_2:16860996-16861015 | None:intergenic | 30.0% | |
| TAGGATAGTAAGTTCATCAA+GGG | + | chr5_2:16861066-16861085 | None:intergenic | 30.0% | |
| ATAGGATAGTAAGTTCATCA+AGG | + | chr5_2:16861067-16861086 | None:intergenic | 30.0% | |
| GTATTCAATTGAAACAGAGA+AGG | - | chr5_2:16861160-16861179 | Msa0760410:intron | 30.0% | |
| TTTCTCAAGGAACTTGATAA+AGG | - | chr5_2:16861514-16861533 | Msa0760410:intron | 30.0% | |
| ! | ATCCCTTAAAGTAGAGTTTT+GGG | + | chr5_2:16861593-16861612 | None:intergenic | 30.0% |
| TGATCAAGTAAACTTGTGTA+AGG | - | chr5_2:16861745-16861764 | Msa0760410:intron | 30.0% | |
| GTTTCTGTTGAAAAACTGAT+AGG | + | chr5_2:16861795-16861814 | None:intergenic | 30.0% | |
| ! | TTTGTAGCTTTGCAAATTCA+CGG | + | chr5_2:16861877-16861896 | None:intergenic | 30.0% |
| TTTCATGTGAGTATGTTGAA+TGG | - | chr5_2:16862110-16862129 | Msa0760410:intron | 30.0% | |
| TTCATGTGAGTATGTTGAAT+GGG | - | chr5_2:16862111-16862130 | Msa0760410:intron | 30.0% | |
| !!! | GAGTACTGATTATATTTTGC+TGG | - | chr5_2:16862140-16862159 | Msa0760410:intron | 30.0% |
| ! | ATTTTGCTGGAATGAATTGT+AGG | - | chr5_2:16862153-16862172 | Msa0760410:intron | 30.0% |
| TTGTAGGATATACATTACCA+AGG | - | chr5_2:16862169-16862188 | Msa0760410:intron | 30.0% | |
| ATCTTGTCCAGAAAAGTTGT+TGG | + | chr5_2:16860304-16860323 | None:intergenic | 35.0% | |
| ! | AACAACTTTTCTGGACAAGA+TGG | - | chr5_2:16860303-16860322 | Msa0760410:three_prime_UTR | 35.0% |
| TTCTGGACAAGATGGTTTAT+TGG | - | chr5_2:16860311-16860330 | Msa0760410:three_prime_UTR | 35.0% | |
| ATTGGACTGTTAAGAGTCTT+AGG | - | chr5_2:16860329-16860348 | Msa0760410:exon | 35.0% | |
| !!! | TCCAACTGATCTCTTTTTTC+AGG | - | chr5_2:16860354-16860373 | Msa0760410:CDS | 35.0% |
| ACCTGAAAAAAGAGATCAGT+TGG | + | chr5_2:16860358-16860377 | None:intergenic | 35.0% | |
| TGCATAATGCATGTGATGTT+TGG | - | chr5_2:16860819-16860838 | Msa0760410:intron | 35.0% | |
| !! | CATGTGATGTTTGGTTTGTT+TGG | - | chr5_2:16860828-16860847 | Msa0760410:intron | 35.0% |
| ! | AAAAGGTCATCATTTTGTGG+TGG | + | chr5_2:16860957-16860976 | None:intergenic | 35.0% |
| AGGATAGTAAGTTCATCAAG+GGG | + | chr5_2:16861065-16861084 | None:intergenic | 35.0% | |
| CAATTGAAACAGAGAAGGTA+TGG | - | chr5_2:16861165-16861184 | Msa0760410:intron | 35.0% | |
| TCATAAGTCATAACTGTCCA+GGG | - | chr5_2:16861388-16861407 | Msa0760410:CDS | 35.0% | |
| CAATAGTCAATAGCAATAGC+TGG | + | chr5_2:16861562-16861581 | None:intergenic | 35.0% | |
| ! | CAGCTATTGCTATTGACTAT+TGG | - | chr5_2:16861560-16861579 | Msa0760410:intron | 35.0% |
| TTCCCCAAAACTCTACTTTA+AGG | - | chr5_2:16861587-16861606 | Msa0760410:intron | 35.0% | |
| TCCCCAAAACTCTACTTTAA+GGG | - | chr5_2:16861588-16861607 | Msa0760410:intron | 35.0% | |
| ! | TCCCTTAAAGTAGAGTTTTG+GGG | + | chr5_2:16861592-16861611 | None:intergenic | 35.0% |
| ! | CATCCCTTAAAGTAGAGTTT+TGG | + | chr5_2:16861594-16861613 | None:intergenic | 35.0% |
| ! | TACTTTAAGGGATGTTGTAG+AGG | - | chr5_2:16861600-16861619 | Msa0760410:intron | 35.0% |
| CGATGTTAACTACTTTGCAT+CGG | - | chr5_2:16861651-16861670 | Msa0760410:intron | 35.0% | |
| AGGTTATCCTCTCAATGTAA+AGG | - | chr5_2:16861765-16861784 | Msa0760410:intron | 35.0% | |
| AGGATAACCTTTACATTGAG+AGG | + | chr5_2:16861775-16861794 | None:intergenic | 35.0% | |
| ACAGAAACTAATGGTGTGTT+TGG | - | chr5_2:16861807-16861826 | Msa0760410:intron | 35.0% | |
| TGCAAAGCTACAAATTCAAG+AGG | - | chr5_2:16861883-16861902 | Msa0760410:intron | 35.0% | |
| GGTATCTAGTGATAACCAAT+TGG | + | chr5_2:16862219-16862238 | None:intergenic | 35.0% | |
| ATCACTAGATACCAATCTGT+TGG | - | chr5_2:16862226-16862245 | Msa0760410:CDS | 35.0% | |
| ATCTTGTCCAGAAAAGTTGT+TGG | + | chr5_2:16860304-16860323 | None:intergenic | 35.0% | |
| ! | AACAACTTTTCTGGACAAGA+TGG | - | chr5_2:16860303-16860322 | Msa0760410:three_prime_UTR | 35.0% |
| TTCTGGACAAGATGGTTTAT+TGG | - | chr5_2:16860311-16860330 | Msa0760410:three_prime_UTR | 35.0% | |
| ATTGGACTGTTAAGAGTCTT+AGG | - | chr5_2:16860329-16860348 | Msa0760410:exon | 35.0% | |
| !!! | TCCAACTGATCTCTTTTTTC+AGG | - | chr5_2:16860354-16860373 | Msa0760410:CDS | 35.0% |
| ACCTGAAAAAAGAGATCAGT+TGG | + | chr5_2:16860358-16860377 | None:intergenic | 35.0% | |
| TGCATAATGCATGTGATGTT+TGG | - | chr5_2:16860819-16860838 | Msa0760410:intron | 35.0% | |
| !! | CATGTGATGTTTGGTTTGTT+TGG | - | chr5_2:16860828-16860847 | Msa0760410:intron | 35.0% |
| ! | AAAAGGTCATCATTTTGTGG+TGG | + | chr5_2:16860957-16860976 | None:intergenic | 35.0% |
| AGGATAGTAAGTTCATCAAG+GGG | + | chr5_2:16861065-16861084 | None:intergenic | 35.0% | |
| CAATTGAAACAGAGAAGGTA+TGG | - | chr5_2:16861165-16861184 | Msa0760410:intron | 35.0% | |
| TCATAAGTCATAACTGTCCA+GGG | - | chr5_2:16861388-16861407 | Msa0760410:CDS | 35.0% | |
| CAATAGTCAATAGCAATAGC+TGG | + | chr5_2:16861562-16861581 | None:intergenic | 35.0% | |
| ! | CAGCTATTGCTATTGACTAT+TGG | - | chr5_2:16861560-16861579 | Msa0760410:intron | 35.0% |
| TTCCCCAAAACTCTACTTTA+AGG | - | chr5_2:16861587-16861606 | Msa0760410:intron | 35.0% | |
| TCCCCAAAACTCTACTTTAA+GGG | - | chr5_2:16861588-16861607 | Msa0760410:intron | 35.0% | |
| ! | TCCCTTAAAGTAGAGTTTTG+GGG | + | chr5_2:16861592-16861611 | None:intergenic | 35.0% |
| ! | CATCCCTTAAAGTAGAGTTT+TGG | + | chr5_2:16861594-16861613 | None:intergenic | 35.0% |
| ! | TACTTTAAGGGATGTTGTAG+AGG | - | chr5_2:16861600-16861619 | Msa0760410:intron | 35.0% |
| CGATGTTAACTACTTTGCAT+CGG | - | chr5_2:16861651-16861670 | Msa0760410:intron | 35.0% | |
| AGGTTATCCTCTCAATGTAA+AGG | - | chr5_2:16861765-16861784 | Msa0760410:intron | 35.0% | |
| AGGATAACCTTTACATTGAG+AGG | + | chr5_2:16861775-16861794 | None:intergenic | 35.0% | |
| ACAGAAACTAATGGTGTGTT+TGG | - | chr5_2:16861807-16861826 | Msa0760410:intron | 35.0% | |
| TGCAAAGCTACAAATTCAAG+AGG | - | chr5_2:16861883-16861902 | Msa0760410:intron | 35.0% | |
| GGTATCTAGTGATAACCAAT+TGG | + | chr5_2:16862219-16862238 | None:intergenic | 35.0% | |
| ATCACTAGATACCAATCTGT+TGG | - | chr5_2:16862226-16862245 | Msa0760410:CDS | 35.0% | |
| CAGATCAATCGTAACATCTG+CGG | + | chr5_2:16860266-16860285 | None:intergenic | 40.0% | |
| GTTACACCTAACTCCTGAAA+AGG | - | chr5_2:16860721-16860740 | Msa0760410:intron | 40.0% | |
| !! | TAAAGGCCTTTTCAGGAGTT+AGG | + | chr5_2:16860730-16860749 | None:intergenic | 40.0% |
| AACTCCTGAAAAGGCCTTTA+AGG | - | chr5_2:16860730-16860749 | Msa0760410:intron | 40.0% | |
| ! | AGTACCTTAAAGGCCTTTTC+AGG | + | chr5_2:16860737-16860756 | None:intergenic | 40.0% |
| TGTTTGGCATGCATGTACTT+TGG | - | chr5_2:16860844-16860863 | Msa0760410:intron | 40.0% | |
| TGTACTTTGGTAAGGTCAGT+TGG | - | chr5_2:16860857-16860876 | Msa0760410:intron | 40.0% | |
| CATGCACCTAATGACTTTCA+TGG | - | chr5_2:16861329-16861348 | Msa0760410:CDS | 40.0% | |
| CCACTTCCATGAAAGTCATT+AGG | + | chr5_2:16861338-16861357 | None:intergenic | 40.0% | |
| CCTAATGACTTTCATGGAAG+TGG | - | chr5_2:16861335-16861354 | Msa0760410:CDS | 40.0% | |
| GTCATAAGTCATAACTGTCC+AGG | - | chr5_2:16861387-16861406 | Msa0760410:CDS | 40.0% | |
| !! | AAGCATTGAAGAAAACACCC+TGG | + | chr5_2:16861408-16861427 | None:intergenic | 40.0% |
| ACCATACGGTGTGCAAATTT+GGG | + | chr5_2:16861454-16861473 | None:intergenic | 40.0% | |
| AACCATACGGTGTGCAAATT+TGG | + | chr5_2:16861455-16861474 | None:intergenic | 40.0% | |
| AAATTTGCACACCGTATGGT+TGG | - | chr5_2:16861454-16861473 | Msa0760410:intron | 40.0% | |
| AGTGAATAGCTTCTTCCTCA+AGG | + | chr5_2:16861483-16861502 | None:intergenic | 40.0% | |
| CTCATACACTGAGTTTCTCA+AGG | - | chr5_2:16861501-16861520 | Msa0760410:intron | 40.0% | |
| ATTACCAAGGACGAGAGTTA+AGG | - | chr5_2:16862182-16862201 | Msa0760410:intron | 40.0% | |
| !! | ACCAATCTGTTGGCCTATTT+TGG | - | chr5_2:16862236-16862255 | Msa0760410:CDS | 40.0% |
| ACCAAAATAGGCCAACAGAT+TGG | + | chr5_2:16862240-16862259 | None:intergenic | 40.0% | |
| !! | AATCTGTTGGCCTATTTTGG+TGG | - | chr5_2:16862239-16862258 | Msa0760410:CDS | 40.0% |
| CAGATCAATCGTAACATCTG+CGG | + | chr5_2:16860266-16860285 | None:intergenic | 40.0% | |
| GTTACACCTAACTCCTGAAA+AGG | - | chr5_2:16860721-16860740 | Msa0760410:intron | 40.0% | |
| !! | TAAAGGCCTTTTCAGGAGTT+AGG | + | chr5_2:16860730-16860749 | None:intergenic | 40.0% |
| AACTCCTGAAAAGGCCTTTA+AGG | - | chr5_2:16860730-16860749 | Msa0760410:intron | 40.0% | |
| ! | AGTACCTTAAAGGCCTTTTC+AGG | + | chr5_2:16860737-16860756 | None:intergenic | 40.0% |
| TGTTTGGCATGCATGTACTT+TGG | - | chr5_2:16860844-16860863 | Msa0760410:intron | 40.0% | |
| TGTACTTTGGTAAGGTCAGT+TGG | - | chr5_2:16860857-16860876 | Msa0760410:intron | 40.0% | |
| CATGCACCTAATGACTTTCA+TGG | - | chr5_2:16861329-16861348 | Msa0760410:CDS | 40.0% | |
| CCACTTCCATGAAAGTCATT+AGG | + | chr5_2:16861338-16861357 | None:intergenic | 40.0% | |
| CCTAATGACTTTCATGGAAG+TGG | - | chr5_2:16861335-16861354 | Msa0760410:CDS | 40.0% | |
| GTCATAAGTCATAACTGTCC+AGG | - | chr5_2:16861387-16861406 | Msa0760410:CDS | 40.0% | |
| !! | AAGCATTGAAGAAAACACCC+TGG | + | chr5_2:16861408-16861427 | None:intergenic | 40.0% |
| ACCATACGGTGTGCAAATTT+GGG | + | chr5_2:16861454-16861473 | None:intergenic | 40.0% | |
| AACCATACGGTGTGCAAATT+TGG | + | chr5_2:16861455-16861474 | None:intergenic | 40.0% | |
| AAATTTGCACACCGTATGGT+TGG | - | chr5_2:16861454-16861473 | Msa0760410:intron | 40.0% | |
| AGTGAATAGCTTCTTCCTCA+AGG | + | chr5_2:16861483-16861502 | None:intergenic | 40.0% | |
| CTCATACACTGAGTTTCTCA+AGG | - | chr5_2:16861501-16861520 | Msa0760410:intron | 40.0% | |
| ATTACCAAGGACGAGAGTTA+AGG | - | chr5_2:16862182-16862201 | Msa0760410:intron | 40.0% | |
| !! | ACCAATCTGTTGGCCTATTT+TGG | - | chr5_2:16862236-16862255 | Msa0760410:CDS | 40.0% |
| ACCAAAATAGGCCAACAGAT+TGG | + | chr5_2:16862240-16862259 | None:intergenic | 40.0% | |
| !! | AATCTGTTGGCCTATTTTGG+TGG | - | chr5_2:16862239-16862258 | Msa0760410:CDS | 40.0% |
| ! | ATCTGCGGATTGTCAACCTT+TGG | + | chr5_2:16860251-16860270 | None:intergenic | 45.0% |
| TGAGAGTTGGATCTAGCAGA+AGG | - | chr5_2:16860458-16860477 | Msa0760410:intron | 45.0% | |
| GAGAGTTGGATCTAGCAGAA+GGG | - | chr5_2:16860459-16860478 | Msa0760410:intron | 45.0% | |
| TCGATGGTTCGCTACATTGT+GGG | + | chr5_2:16860492-16860511 | None:intergenic | 45.0% | |
| TTCGATGGTTCGCTACATTG+TGG | + | chr5_2:16860493-16860512 | None:intergenic | 45.0% | |
| GGCATGCATGTACTTTGGTA+AGG | - | chr5_2:16860849-16860868 | Msa0760410:intron | 45.0% | |
| CTGTCTCAAGCATCATTGCT+CGG | + | chr5_2:16861194-16861213 | None:intergenic | 45.0% | |
| TGGAAGTGGCAAAACCAAAG+TGG | - | chr5_2:16861349-16861368 | Msa0760410:CDS | 45.0% | |
| ACCCAAATTTGCACACCGTA+TGG | - | chr5_2:16861450-16861469 | Msa0760410:intron | 45.0% | |
| CCTCAAGGTAACCAACCATA+CGG | + | chr5_2:16861468-16861487 | None:intergenic | 45.0% | |
| TCAATAGCAATAGCTGGAGC+AGG | + | chr5_2:16861556-16861575 | None:intergenic | 45.0% | |
| TTGAGTGAGAGCGAGACAAA+GGG | + | chr5_2:16861689-16861708 | None:intergenic | 45.0% | |
| ATTGAGTGAGAGCGAGACAA+AGG | + | chr5_2:16861690-16861709 | None:intergenic | 45.0% | |
| CTTAGCACACAAGATTGGCA+TGG | + | chr5_2:16861844-16861863 | None:intergenic | 45.0% | |
| CATGCCAATCTTGTGTGCTA+AGG | - | chr5_2:16861842-16861861 | Msa0760410:intron | 45.0% | |
| CTTGCCTTAGCACACAAGAT+TGG | + | chr5_2:16861849-16861868 | None:intergenic | 45.0% | |
| CAGTTCACCACCACCAAAAT+AGG | + | chr5_2:16862252-16862271 | None:intergenic | 45.0% | |
| ! | ATCTGCGGATTGTCAACCTT+TGG | + | chr5_2:16860251-16860270 | None:intergenic | 45.0% |
| TGAGAGTTGGATCTAGCAGA+AGG | - | chr5_2:16860458-16860477 | Msa0760410:intron | 45.0% | |
| GAGAGTTGGATCTAGCAGAA+GGG | - | chr5_2:16860459-16860478 | Msa0760410:intron | 45.0% | |
| TCGATGGTTCGCTACATTGT+GGG | + | chr5_2:16860492-16860511 | None:intergenic | 45.0% | |
| TTCGATGGTTCGCTACATTG+TGG | + | chr5_2:16860493-16860512 | None:intergenic | 45.0% | |
| GGCATGCATGTACTTTGGTA+AGG | - | chr5_2:16860849-16860868 | Msa0760410:intron | 45.0% | |
| CTGTCTCAAGCATCATTGCT+CGG | + | chr5_2:16861194-16861213 | None:intergenic | 45.0% | |
| TGGAAGTGGCAAAACCAAAG+TGG | - | chr5_2:16861349-16861368 | Msa0760410:CDS | 45.0% | |
| ACCCAAATTTGCACACCGTA+TGG | - | chr5_2:16861450-16861469 | Msa0760410:intron | 45.0% | |
| CCTCAAGGTAACCAACCATA+CGG | + | chr5_2:16861468-16861487 | None:intergenic | 45.0% | |
| TCAATAGCAATAGCTGGAGC+AGG | + | chr5_2:16861556-16861575 | None:intergenic | 45.0% | |
| TTGAGTGAGAGCGAGACAAA+GGG | + | chr5_2:16861689-16861708 | None:intergenic | 45.0% | |
| ATTGAGTGAGAGCGAGACAA+AGG | + | chr5_2:16861690-16861709 | None:intergenic | 45.0% | |
| CTTAGCACACAAGATTGGCA+TGG | + | chr5_2:16861844-16861863 | None:intergenic | 45.0% | |
| CATGCCAATCTTGTGTGCTA+AGG | - | chr5_2:16861842-16861861 | Msa0760410:intron | 45.0% | |
| CTTGCCTTAGCACACAAGAT+TGG | + | chr5_2:16861849-16861868 | None:intergenic | 45.0% | |
| CAGTTCACCACCACCAAAAT+AGG | + | chr5_2:16862252-16862271 | None:intergenic | 45.0% | |
| !! | TTATTATTATTATTAAAATC+CGG | - | chr5_2:16860423-16860442 | Msa0760410:intron | 5.0% |
| !! | TTATTATTATTATTAAAATC+CGG | - | chr5_2:16860423-16860442 | Msa0760410:intron | 5.0% |
| ACTCTCATCGATCCAGAACC+CGG | + | chr5_2:16860445-16860464 | None:intergenic | 50.0% | |
| !! | GGTTCTGGATCGATGAGAGT+TGG | - | chr5_2:16860445-16860464 | Msa0760410:intron | 50.0% |
| GCATTCCTCCTACCATACCA+GGG | + | chr5_2:16861227-16861246 | None:intergenic | 50.0% | |
| AGCATTCCTCCTACCATACC+AGG | + | chr5_2:16861228-16861247 | None:intergenic | 50.0% | |
| ATCCACCACTGTGCTCGAAT+CGG | + | chr5_2:16861272-16861291 | None:intergenic | 50.0% | |
| AGTGCACGCTCATACCACTT+TGG | + | chr5_2:16861366-16861385 | None:intergenic | 50.0% | |
| ! | CCGTATGGTTGGTTACCTTG+AGG | - | chr5_2:16861465-16861484 | Msa0760410:intron | 50.0% |
| ACCAAGGACGAGAGTTAAGG+AGG | - | chr5_2:16862185-16862204 | Msa0760410:intron | 50.0% | |
| !!! | CTGTTGGCCTATTTTGGTGG+TGG | - | chr5_2:16862242-16862261 | Msa0760410:CDS | 50.0% |
| ACTCTCATCGATCCAGAACC+CGG | + | chr5_2:16860445-16860464 | None:intergenic | 50.0% | |
| !! | GGTTCTGGATCGATGAGAGT+TGG | - | chr5_2:16860445-16860464 | Msa0760410:intron | 50.0% |
| GCATTCCTCCTACCATACCA+GGG | + | chr5_2:16861227-16861246 | None:intergenic | 50.0% | |
| AGCATTCCTCCTACCATACC+AGG | + | chr5_2:16861228-16861247 | None:intergenic | 50.0% | |
| ATCCACCACTGTGCTCGAAT+CGG | + | chr5_2:16861272-16861291 | None:intergenic | 50.0% | |
| AGTGCACGCTCATACCACTT+TGG | + | chr5_2:16861366-16861385 | None:intergenic | 50.0% | |
| ! | CCGTATGGTTGGTTACCTTG+AGG | - | chr5_2:16861465-16861484 | Msa0760410:intron | 50.0% |
| ACCAAGGACGAGAGTTAAGG+AGG | - | chr5_2:16862185-16862204 | Msa0760410:intron | 50.0% | |
| !!! | CTGTTGGCCTATTTTGGTGG+TGG | - | chr5_2:16862242-16862261 | Msa0760410:CDS | 50.0% |
| AGTAGCTGCTGTCCCTGGTA+TGG | - | chr5_2:16861212-16861231 | Msa0760410:CDS | 55.0% | |
| ! | GATTCGAGCACAGTGGTGGA+TGG | - | chr5_2:16861271-16861290 | Msa0760410:CDS | 55.0% |
| GCCTCCTTAACTCTCGTCCT+TGG | + | chr5_2:16862189-16862208 | None:intergenic | 55.0% | |
| AAGGAGGCTGCTGCTCCAAT+TGG | - | chr5_2:16862201-16862220 | Msa0760410:intron | 55.0% | |
| AGTAGCTGCTGTCCCTGGTA+TGG | - | chr5_2:16861212-16861231 | Msa0760410:CDS | 55.0% | |
| ! | GATTCGAGCACAGTGGTGGA+TGG | - | chr5_2:16861271-16861290 | Msa0760410:CDS | 55.0% |
| GCCTCCTTAACTCTCGTCCT+TGG | + | chr5_2:16862189-16862208 | None:intergenic | 55.0% | |
| AAGGAGGCTGCTGCTCCAAT+TGG | - | chr5_2:16862201-16862220 | Msa0760410:intron | 55.0% | |
| GAGACAGTAGCTGCTGTCCC+TGG | - | chr5_2:16861207-16861226 | Msa0760410:intron | 60.0% | |
| GCTGCTGTCCCTGGTATGGT+AGG | - | chr5_2:16861216-16861235 | Msa0760410:CDS | 60.0% | |
| GCTGTCCCTGGTATGGTAGG+AGG | - | chr5_2:16861219-16861238 | Msa0760410:CDS | 60.0% | |
| !! | TTGCGCCGATTCGAGCACAG+TGG | - | chr5_2:16861264-16861283 | Msa0760410:CDS | 60.0% |
| GAGACAGTAGCTGCTGTCCC+TGG | - | chr5_2:16861207-16861226 | Msa0760410:intron | 60.0% | |
| GCTGCTGTCCCTGGTATGGT+AGG | - | chr5_2:16861216-16861235 | Msa0760410:CDS | 60.0% | |
| GCTGTCCCTGGTATGGTAGG+AGG | - | chr5_2:16861219-16861238 | Msa0760410:CDS | 60.0% | |
| !! | TTGCGCCGATTCGAGCACAG+TGG | - | chr5_2:16861264-16861283 | Msa0760410:CDS | 60.0% |
| !! | CGCCGATTCGAGCACAGTGG+TGG | - | chr5_2:16861267-16861286 | Msa0760410:CDS | 65.0% |
| !! | CGCCGATTCGAGCACAGTGG+TGG | - | chr5_2:16861267-16861286 | Msa0760410:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 16860213 | 16862388 | 16860213 | ID=Msa0760410;Name=Msa0760410 |
| chr5_2 | mRNA | 16860213 | 16862388 | 16860213 | ID=Msa0760410-mRNA-1;Parent=Msa0760410;Name=Msa0760410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=109|0.66|0.5|1|1|1|4|121|199 |
| chr5_2 | exon | 16860213 | 16860426 | 16860213 | ID=Msa0760410-mRNA-1:exon:7477;Parent=Msa0760410-mRNA-1 |
| chr5_2 | exon | 16860929 | 16861164 | 16860929 | ID=Msa0760410-mRNA-1:exon:7476;Parent=Msa0760410-mRNA-1 |
| chr5_2 | exon | 16861208 | 16861424 | 16861208 | ID=Msa0760410-mRNA-1:exon:7475;Parent=Msa0760410-mRNA-1 |
| chr5_2 | exon | 16862226 | 16862388 | 16862226 | ID=Msa0760410-mRNA-1:exon:7474;Parent=Msa0760410-mRNA-1 |
| chr5_2 | five_prime_UTR | 16862280 | 16862388 | 16862280 | ID=Msa0760410-mRNA-1:five_prime_utr;Parent=Msa0760410-mRNA-1 |
| chr5_2 | CDS | 16862226 | 16862279 | 16862226 | ID=Msa0760410-mRNA-1:cds;Parent=Msa0760410-mRNA-1 |
| chr5_2 | CDS | 16861208 | 16861424 | 16861208 | ID=Msa0760410-mRNA-1:cds;Parent=Msa0760410-mRNA-1 |
| chr5_2 | CDS | 16860929 | 16861164 | 16860929 | ID=Msa0760410-mRNA-1:cds;Parent=Msa0760410-mRNA-1 |
| chr5_2 | CDS | 16860334 | 16860426 | 16860334 | ID=Msa0760410-mRNA-1:cds;Parent=Msa0760410-mRNA-1 |
| chr5_2 | three_prime_UTR | 16860213 | 16860333 | 16860213 | ID=Msa0760410-mRNA-1:three_prime_utr;Parent=Msa0760410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
