AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 11 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCTCTCTTAACCCTATT+TGG 0.136126 4_2:+72764124 None:intergenic
ATAAGGGGTTAGTGGGTTAA+AGG 0.308352 4_2:+72759967 None:intergenic
TTGGTTTAGTTCATCCAAAT+AGG 0.321737 4_2:-72764138 Msa0620960:CDS
GTGGGTTAAAGGATCTTTAC+CGG 0.374039 4_2:+72759978 None:intergenic
TGGTTTAGTTCATCCAAATA+GGG 0.382497 4_2:-72764137 Msa0620960:CDS
TCCGTTTCTGCAATCTTCTC+CGG 0.429544 4_2:-72759997 Msa0620960:CDS
TAACTTCTTGTGCTTTATAA+CGG 0.432332 4_2:+72760022 None:intergenic
ACCGGAGAAGATTGCAGAAA+CGG 0.450665 4_2:+72759996 None:intergenic
CGGTTGTGGCGTTGTTCACA+TGG 0.456593 4_2:+72760042 None:intergenic
CTTGTGCTTTATAACGGTTG+TGG 0.521595 4_2:+72760028 None:intergenic
AACAAACATAAGGGGTTAGT+GGG 0.552310 4_2:+72759960 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATTATAAAGAATTA+AGG + chr4_2:72760717-72760736 None:intergenic 10.0%
!!! TTATTTTATTTTTGAGAAAA+AGG - chr4_2:72760888-72760907 Msa0620960:intron 10.0%
!!! TTTTTTTGAAAAAGTTAAAA+TGG - chr4_2:72761190-72761209 Msa0620960:intron 10.0%
!!! CAAAATTTAACTTAAAAATA+GGG + chr4_2:72762619-72762638 None:intergenic 10.0%
!!! ACAAAATTTAACTTAAAAAT+AGG + chr4_2:72762620-72762639 None:intergenic 10.0%
!!! TAAAAAATTCTAATTTTTTG+GGG + chr4_2:72762693-72762712 None:intergenic 10.0%
!!! GTTAAAAAATTCTAATTTTT+TGG + chr4_2:72762695-72762714 None:intergenic 10.0%
!!! CATAAAATTTTGTTTTTTAA+GGG + chr4_2:72763669-72763688 None:intergenic 10.0%
!!! ACATAAAATTTTGTTTTTTA+AGG + chr4_2:72763670-72763689 None:intergenic 10.0%
!!! CATTATTTGTACATTTTTTT+TGG + chr4_2:72760163-72760182 None:intergenic 15.0%
!! AAAAAAATGTACAAATAATG+CGG - chr4_2:72760163-72760182 Msa0620960:intron 15.0%
!! AAAATTACAAAGAAACAATT+AGG + chr4_2:72760328-72760347 None:intergenic 15.0%
!!! TAATTTTAATCCTTAGTTTT+TGG - chr4_2:72760341-72760360 Msa0620960:intron 15.0%
!!! TTTTCATATGAAGAAAATAA+TGG + chr4_2:72760578-72760597 None:intergenic 15.0%
!!! TATTTTCTTCATATGAAAAT+TGG - chr4_2:72760579-72760598 Msa0620960:intron 15.0%
!! ATTAAAAAATGGATAAAGAT+AGG + chr4_2:72761051-72761070 None:intergenic 15.0%
!!! GATTTTTTTTTTATTTTCAC+GGG + chr4_2:72761328-72761347 None:intergenic 15.0%
!!! GGATTTTTTTTTTATTTTCA+CGG + chr4_2:72761329-72761348 None:intergenic 15.0%
!!! AAAAAATTCTAATTTTTTGG+GGG + chr4_2:72762692-72762711 None:intergenic 15.0%
!! GAAAATTTGGTATATTTATA+GGG - chr4_2:72762960-72762979 Msa0620960:intron 15.0%
!! ATGTATAGAATGAAAATTTA+AGG + chr4_2:72763277-72763296 None:intergenic 15.0%
!! AAATTCATATTGTAATTAGA+TGG - chr4_2:72763355-72763374 Msa0620960:intron 15.0%
!!! GATCTAACATAATTTTTTTT+AGG + chr4_2:72763647-72763666 None:intergenic 15.0%
!! CAGTTGAAAAAATTGAAAAT+CGG - chr4_2:72761127-72761146 Msa0620960:intron 20.0%
!! TCAAAAAAAAAAAACCGAAA+AGG + chr4_2:72761179-72761198 None:intergenic 20.0%
!! AAAAAAATCCAAAAACCTAT+AGG - chr4_2:72761339-72761358 Msa0620960:intron 20.0%
!!! TGTTTTTTATTTGTTTCGTT+TGG + chr4_2:72762142-72762161 None:intergenic 20.0%
!!! TAATATCTTTCAAACCTTTT+CGG - chr4_2:72762383-72762402 Msa0620960:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr4_2:72762528-72762547 None:intergenic 20.0%
!!! TGAAGATGGAAAATTTTATA+GGG + chr4_2:72762900-72762919 None:intergenic 20.0%
!!! ATGAATTTTTATATGCTTGA+CGG + chr4_2:72762746-72762765 None:intergenic 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG - chr4_2:72762868-72762887 Msa0620960:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG - chr4_2:72762869-72762888 Msa0620960:intron 20.0%
!!! TGAAGATGGAAAATTTTATA+GGG - chr4_2:72762900-72762919 Msa0620960:intron 20.0%
!! CGAAAATTTGGTATATTTAT+AGG - chr4_2:72762959-72762978 Msa0620960:intron 20.0%
!!! AAAAGGGTTAAATATGTTTT+TGG + chr4_2:72762987-72763006 None:intergenic 20.0%
!! TGCAGAAAAAATTAAAATGA+CGG + chr4_2:72763145-72763164 None:intergenic 20.0%
!!! TAATTTTTTCTGCAAATATG+TGG - chr4_2:72763151-72763170 Msa0620960:intron 20.0%
!! ATATTTAACGATTTAGTCAA+CGG - chr4_2:72763493-72763512 Msa0620960:intron 20.0%
!!! ACCTCATCTATTTTTATAAT+AGG + chr4_2:72763577-72763596 None:intergenic 20.0%
!!! TGATTTCTTTTATAATGCTT+CGG - chr4_2:72763693-72763712 Msa0620960:intron 20.0%
!!! AAAGGATAGTTTTTTTTGAA+AGG + chr4_2:72764038-72764057 None:intergenic 20.0%
!! GACAACAATTTTACAATAGT+TGG - chr4_2:72760001-72760020 Msa0620960:CDS 25.0%
! TTACAATAGTTGGAATTTAG+TGG - chr4_2:72760011-72760030 Msa0620960:CDS 25.0%
!!! TTTTAATCCTTAGTTTTTGG+TGG - chr4_2:72760344-72760363 Msa0620960:intron 25.0%
!!! TTTAATCCTTAGTTTTTGGT+GGG - chr4_2:72760345-72760364 Msa0620960:intron 25.0%
! ATTGCACAAAACATAACATT+GGG + chr4_2:72760671-72760690 None:intergenic 25.0%
! AATCGTAATTCAGAAAGATT+GGG + chr4_2:72760752-72760771 None:intergenic 25.0%
! AAATCGTAATTCAGAAAGAT+TGG + chr4_2:72760753-72760772 None:intergenic 25.0%
! CACATGATAGGATTAAAAAA+TGG + chr4_2:72761062-72761081 None:intergenic 25.0%
!!! GTTTTGGTGTTTCTTTATTT+CGG + chr4_2:72761391-72761410 None:intergenic 25.0%
!!! ATTTGATTTGTTTTCTCTCT+TGG + chr4_2:72762043-72762062 None:intergenic 25.0%
!! TCTTCTCATTTCTTTTATTC+TGG - chr4_2:72762408-72762427 Msa0620960:intron 25.0%
!!! TTTTGGGTTAAATATGTGTT+TGG - chr4_2:72762501-72762520 Msa0620960:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG + chr4_2:72762529-72762548 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr4_2:72762929-72762948 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr4_2:72762928-72762947 None:intergenic 25.0%
!! GTGAAGATGGAAAATTTTAT+AGG + chr4_2:72762899-72762918 None:intergenic 25.0%
!! AAATTTTCCATCTTCACTTT+TGG - chr4_2:72762592-72762611 Msa0620960:intron 25.0%
!! AAATTTTCCATCTTCACTTT+TGG + chr4_2:72762592-72762611 None:intergenic 25.0%
!! GTGAAGATGGAAAATTTTAT+AGG - chr4_2:72762899-72762918 Msa0620960:intron 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr4_2:72762928-72762947 Msa0620960:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr4_2:72762929-72762948 Msa0620960:intron 25.0%
! TATCGATGATGAAAAGAAAA+GGG + chr4_2:72763003-72763022 None:intergenic 25.0%
! ATATCGATGATGAAAAGAAA+AGG + chr4_2:72763004-72763023 None:intergenic 25.0%
! GCCTATTATAAAAATAGATG+AGG - chr4_2:72763573-72763592 Msa0620960:intron 25.0%
!! TGTCATTTAAAGAAATCTCA+GGG - chr4_2:72763602-72763621 Msa0620960:intron 25.0%
! TAAATGTTTAAGAAAAGTCC+CGG - chr4_2:72763843-72763862 Msa0620960:intron 25.0%
!! TTCGTTAAACACATTTTCTT+CGG + chr4_2:72763975-72763994 None:intergenic 25.0%
! TAACTTCTTGTGCTTTATAA+CGG + chr4_2:72764182-72764201 None:intergenic 25.0%
! TTGGTTTAGTTCATCCAAAT+AGG - chr4_2:72760063-72760082 Msa0620960:CDS 30.0%
! TGGTTTAGTTCATCCAAATA+GGG - chr4_2:72760064-72760083 Msa0620960:CDS 30.0%
TTATCTCTCTTAACCCTATT+TGG + chr4_2:72760080-72760099 None:intergenic 30.0%
! TATCGATTGTGAAGAAAATC+AGG + chr4_2:72760482-72760501 None:intergenic 30.0%
TGATTGGGAAGAAAATTGAT+TGG + chr4_2:72760511-72760530 None:intergenic 30.0%
GATTGCACAAAACATAACAT+TGG + chr4_2:72760672-72760691 None:intergenic 30.0%
AATCGATTGGGAATAAGATT+GGG + chr4_2:72760828-72760847 None:intergenic 30.0%
AAATCGATTGGGAATAAGAT+TGG + chr4_2:72760829-72760848 None:intergenic 30.0%
CACACATAACTAAATCGATT+GGG + chr4_2:72760840-72760859 None:intergenic 30.0%
ACACACATAACTAAATCGAT+TGG + chr4_2:72760841-72760860 None:intergenic 30.0%
ACTCTATTCTATCATGTGTT+TGG + chr4_2:72760952-72760971 None:intergenic 30.0%
CATTTATACTATCATGCGTT+TGG + chr4_2:72761007-72761026 None:intergenic 30.0%
AACTGTTTCGATGATGTTTA+GGG + chr4_2:72761112-72761131 None:intergenic 30.0%
AATGAATCTTAACCAACACA+AGG - chr4_2:72761229-72761248 Msa0620960:intron 30.0%
TAGCAACAAACAAATGATGA+TGG - chr4_2:72761276-72761295 Msa0620960:intron 30.0%
AGCAACAAACAAATGATGAT+GGG - chr4_2:72761277-72761296 Msa0620960:intron 30.0%
!!! TTTTATTTTCACGGGTGTAT+GGG + chr4_2:72761320-72761339 None:intergenic 30.0%
!!! TTTTTATTTTCACGGGTGTA+TGG + chr4_2:72761321-72761340 None:intergenic 30.0%
!!! TGTGGTATAGGTTTTTAAGT+TGG + chr4_2:72761531-72761550 None:intergenic 30.0%
! AACCAACAACCTTTGAAAAA+CGG - chr4_2:72761550-72761569 Msa0620960:intron 30.0%
! TTGTTTATGAGGTGTGTTTT+GGG + chr4_2:72761625-72761644 None:intergenic 30.0%
ATGAACTTATATGGTTTCGA+TGG + chr4_2:72761935-72761954 None:intergenic 30.0%
!!! TAAAGGTTGGTTTGTGTTTT+TGG + chr4_2:72762165-72762184 None:intergenic 30.0%
GATTCTAGGTTTAGAAAGAA+AGG - chr4_2:72762320-72762339 Msa0620960:intron 30.0%
! AAACTGCATTCAAACCTTTT+CGG - chr4_2:72762435-72762454 Msa0620960:intron 30.0%
! TAACGTGTTCTCATTGTTTT+TGG - chr4_2:72762484-72762503 Msa0620960:intron 30.0%
!! AACGTGTTCTCATTGTTTTT+GGG - chr4_2:72762485-72762504 Msa0620960:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr4_2:72762915-72762934 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr4_2:72762915-72762934 Msa0620960:intron 30.0%
AAAACATGAGTCCAAAACAA+CGG + chr4_2:72763205-72763224 None:intergenic 30.0%
GATACATCATATGATAGAGT+TGG + chr4_2:72763427-72763446 None:intergenic 30.0%
TAAACAATGCAATACTCATC+TGG - chr4_2:72763453-72763472 Msa0620960:intron 30.0%
AGTTTAAGAGACTTCAAATG+AGG - chr4_2:72763545-72763564 Msa0620960:intron 30.0%
!! GTGTCATTTAAAGAAATCTC+AGG - chr4_2:72763601-72763620 Msa0620960:intron 30.0%
GTCATTTAAAGAAATCTCAG+GGG - chr4_2:72763603-72763622 Msa0620960:intron 30.0%
!! TATAATGCTTCGGTTTTATG+AGG - chr4_2:72763703-72763722 Msa0620960:intron 30.0%
! TACCATGATAATTTGTGTAG+AGG - chr4_2:72763880-72763899 Msa0620960:intron 30.0%
AACCTCTACACAAATTATCA+TGG + chr4_2:72763885-72763904 None:intergenic 30.0%
! ATGATAATTTGTGTAGAGGT+TGG - chr4_2:72763884-72763903 Msa0620960:intron 30.0%
! TGATAATTTGTGTAGAGGTT+GGG - chr4_2:72763885-72763904 Msa0620960:intron 30.0%
ACATTATATGTGAAGAAGTG+GGG + chr4_2:72763926-72763945 None:intergenic 30.0%
CACATTATATGTGAAGAAGT+GGG + chr4_2:72763927-72763946 None:intergenic 30.0%
ACACATTATATGTGAAGAAG+TGG + chr4_2:72763928-72763947 None:intergenic 30.0%
!!! ACCATGTTTTTGGTAAGGTA+TGG - chr4_2:72759979-72759998 Msa0620960:CDS 35.0%
TCCATACCTTACCAAAAACA+TGG + chr4_2:72759983-72760002 None:intergenic 35.0%
TTTCGTTAGCTAGCATCTAA+CGG - chr4_2:72760186-72760205 Msa0620960:intron 35.0%
TCCTACTTAAATCCACTGTT+TGG - chr4_2:72760258-72760277 Msa0620960:intron 35.0%
! ACCAAACAGTGGATTTAAGT+AGG + chr4_2:72760262-72760281 None:intergenic 35.0%
AGAATGATTGGAGGAACATT+GGG + chr4_2:72760643-72760662 None:intergenic 35.0%
AAGAATGATTGGAGGAACAT+TGG + chr4_2:72760644-72760663 None:intergenic 35.0%
TGATAGGATAGACACATGAT+AGG + chr4_2:72761074-72761093 None:intergenic 35.0%
CAACTGTTTCGATGATGTTT+AGG + chr4_2:72761113-72761132 None:intergenic 35.0%
! AAACTGCATTCGAACCTTTT+CGG - chr4_2:72761162-72761181 Msa0620960:intron 35.0%
!! TTATGTTGTTTCGTTGATCC+TGG + chr4_2:72761424-72761443 None:intergenic 35.0%
!!! GTTTTTAAGTTGGTGTTCAG+CGG + chr4_2:72761521-72761540 None:intergenic 35.0%
!! TTTTCAAAGGTTGTTGGTTG+TGG + chr4_2:72761549-72761568 None:intergenic 35.0%
!! TTTTCCTGACCGTTTTTCAA+AGG + chr4_2:72761562-72761581 None:intergenic 35.0%
! GTTGTTTATGAGGTGTGTTT+TGG + chr4_2:72761626-72761645 None:intergenic 35.0%
!!! GGATTTTTGGTTAGCTTTTG+CGG + chr4_2:72761648-72761667 None:intergenic 35.0%
!!! AATGGTGTTGATTTTTGTGG+TGG + chr4_2:72761701-72761720 None:intergenic 35.0%
!!! GGTAATGGTGTTGATTTTTG+TGG + chr4_2:72761704-72761723 None:intergenic 35.0%
! GTTAATGGTGATTTTTGTGG+TGG + chr4_2:72761753-72761772 None:intergenic 35.0%
! AGGGTTAATGGTGATTTTTG+TGG + chr4_2:72761756-72761775 None:intergenic 35.0%
!! TAATTTTGGGTCTTTTGTGG+CGG + chr4_2:72761860-72761879 None:intergenic 35.0%
!! TGCTAATTTTGGGTCTTTTG+TGG + chr4_2:72761863-72761882 None:intergenic 35.0%
!!! TTCTTGGTGGTGCTAATTTT+GGG + chr4_2:72761873-72761892 None:intergenic 35.0%
!!! TTTCTTGGTGGTGCTAATTT+TGG + chr4_2:72761874-72761893 None:intergenic 35.0%
! GTACTTCATGATGGTTTTCT+TGG + chr4_2:72761889-72761908 None:intergenic 35.0%
! TAGTTTGTGGTACTTCATGA+TGG + chr4_2:72761898-72761917 None:intergenic 35.0%
! TCTTTGGTTGTGTTAGTTTG+TGG + chr4_2:72761911-72761930 None:intergenic 35.0%
ATATGGTTTCGATGGATCTT+TGG + chr4_2:72761927-72761946 None:intergenic 35.0%
GGTTCGCTTATGAACTTATA+TGG + chr4_2:72761944-72761963 None:intergenic 35.0%
!! TTTGTTTTCTCTCTTGGTTG+TGG + chr4_2:72762037-72762056 None:intergenic 35.0%
CATCATGTAGATCAAATGGA+TGG + chr4_2:72762257-72762276 None:intergenic 35.0%
CCATTTGATCTACATGATGA+CGG - chr4_2:72762258-72762277 Msa0620960:intron 35.0%
TTGGAATTTGTGAGGAAGAA+AGG - chr4_2:72762289-72762308 Msa0620960:intron 35.0%
! TTAGAAAGAAAGGAGTACGA+CGG - chr4_2:72762330-72762349 Msa0620960:intron 35.0%
GAAATGAGAAGAAACCGAAA+AGG + chr4_2:72762400-72762419 None:intergenic 35.0%
GAGGGACTAAAACGAAAATT+TGG - chr4_2:72762947-72762966 Msa0620960:intron 35.0%
TTGGACAACGACTAAATCAT+TGG - chr4_2:72763042-72763061 Msa0620960:intron 35.0%
TGGACAACGACTAAATCATT+GGG - chr4_2:72763043-72763062 Msa0620960:intron 35.0%
GATGTCTAATGCAACAAACA+AGG + chr4_2:72763090-72763109 None:intergenic 35.0%
AACGAAATGGACGAAAACAA+CGG + chr4_2:72763235-72763254 None:intergenic 35.0%
AACTCACAATGAGAACGAAA+TGG + chr4_2:72763248-72763267 None:intergenic 35.0%
TTTCGTTCTCATTGTGAGTT+AGG - chr4_2:72763248-72763267 Msa0620960:intron 35.0%
CATCTGGTGTGTAAAATTAG+AGG - chr4_2:72763469-72763488 Msa0620960:intron 35.0%
ATTTAAAGAAATCTCAGGGG+AGG - chr4_2:72763606-72763625 Msa0620960:intron 35.0%
! GATAATTTGTGTAGAGGTTG+GGG - chr4_2:72763886-72763905 Msa0620960:intron 35.0%
AACTATCCTTTCATAAACCG+TGG - chr4_2:72764047-72764066 Msa0620960:intron 35.0%
GAATTTAGTGGTGCTTTGCA+GGG - chr4_2:72760023-72760042 Msa0620960:CDS 40.0%
! GGCAATGCTTTTCAATTCGT+TGG - chr4_2:72760044-72760063 Msa0620960:CDS 40.0%
TCTATTGATGCACCAAACAG+TGG + chr4_2:72760273-72760292 None:intergenic 40.0%
TGCTAACCCACCAAAAACTA+AGG + chr4_2:72760354-72760373 None:intergenic 40.0%
GTTAGCAACCTGATAGCATA+CGG - chr4_2:72760367-72760386 Msa0620960:intron 40.0%
! TTTGATAGCCGTATGCTATC+AGG + chr4_2:72760378-72760397 None:intergenic 40.0%
GTGCAGCAGTCAAATTGATT+GGG + chr4_2:72760526-72760545 None:intergenic 40.0%
TGTGCAGCAGTCAAATTGAT+TGG + chr4_2:72760527-72760546 None:intergenic 40.0%
TTTGACTGCTGCACATGAAT+TGG - chr4_2:72760532-72760551 Msa0620960:intron 40.0%
CATTGGGAAGCAAGAATGAT+TGG + chr4_2:72760655-72760674 None:intergenic 40.0%
ATCCTATCATGCGTACCAAA+CGG - chr4_2:72761085-72761104 Msa0620960:intron 40.0%
! AGGCGTTTCCTATAGGTTTT+TGG + chr4_2:72761350-72761369 None:intergenic 40.0%
ACCAAAACAAAGCTAACACC+AGG - chr4_2:72761403-72761422 Msa0620960:intron 40.0%
!!! TCCTGGTGTTAGCTTTGTTT+TGG + chr4_2:72761407-72761426 None:intergenic 40.0%
!!! GGTGGTAGAAGTTGTTTTTG+TGG + chr4_2:72761475-72761494 None:intergenic 40.0%
! AAGGTTGTTGGTTGTGGTAT+AGG + chr4_2:72761543-72761562 None:intergenic 40.0%
!! GACCGTTTTTCAAAGGTTGT+TGG + chr4_2:72761555-72761574 None:intergenic 40.0%
! ACAACCTTTGAAAAACGGTC+AGG - chr4_2:72761555-72761574 Msa0620960:intron 40.0%
! AGCTTTTGCGGTTGTTTATG+AGG + chr4_2:72761636-72761655 None:intergenic 40.0%
!! GGTGATGGTACAAGGATTTT+TGG + chr4_2:72761661-72761680 None:intergenic 40.0%
!!! TGGTTTTTGGTGATGGTACA+AGG + chr4_2:72761669-72761688 None:intergenic 40.0%
!!! TTTGTGGTGGTTTTTGGTGA+TGG + chr4_2:72761676-72761695 None:intergenic 40.0%
!! GATTTTTGTGGTGGTGTTTG+TGG + chr4_2:72761692-72761711 None:intergenic 40.0%
!!! GTCAATGGTAGTTTTGGTGA+CGG + chr4_2:72761731-72761750 None:intergenic 40.0%
! GTGATTTTTGTGGTGGTCAA+TGG + chr4_2:72761746-72761765 None:intergenic 40.0%
!! TGCTTTTAGGTGAGGGTTAA+TGG + chr4_2:72761768-72761787 None:intergenic 40.0%
!!! GTTTTTTGTGGTGATGCTTG+TGG + chr4_2:72761826-72761845 None:intergenic 40.0%
!! AATTTTGGGTCTTTTGTGGC+GGG + chr4_2:72761859-72761878 None:intergenic 40.0%
! CTTCATGATGGTTTTCTTGG+TGG + chr4_2:72761886-72761905 None:intergenic 40.0%
CATGTAGATCAAATGGATGG+TGG + chr4_2:72762254-72762273 None:intergenic 40.0%
CCGTCATCATGTAGATCAAA+TGG + chr4_2:72762261-72762280 None:intergenic 40.0%
GATGTGAAGAGAAACCGAAA+AGG + chr4_2:72762452-72762471 None:intergenic 40.0%
GAGGGACTAAAACGAAAAGT+TGG + chr4_2:72762541-72762560 None:intergenic 40.0%
ATAGGGACCAAAAGTGAAGA+TGG + chr4_2:72762602-72762621 None:intergenic 40.0%
! TCATCGATATTTTTCCCCCT+TGG - chr4_2:72763014-72763033 Msa0620960:intron 40.0%
! CGGTGTTAAGTTCATGTGAT+AGG - chr4_2:72763513-72763532 Msa0620960:intron 40.0%
AGAACACCACGGTTTATGAA+AGG + chr4_2:72764056-72764075 None:intergenic 40.0%
CTTGTGCTTTATAACGGTTG+TGG + chr4_2:72764176-72764195 None:intergenic 40.0%
! GTGGGTTAAAGGATCTTTAC+CGG + chr4_2:72764226-72764245 None:intergenic 40.0%
GGAATTTAGTGGTGCTTTGC+AGG - chr4_2:72760022-72760041 Msa0620960:CDS 45.0%
TTCTTATCCTGCGCACCAAA+CGG + chr4_2:72760213-72760232 None:intergenic 45.0%
! GGAGGTTTTCCTAGGAATAG+AGG + chr4_2:72760408-72760427 None:intergenic 45.0%
AAAACGTAGCAGAGAGTCGA+AGG + chr4_2:72760429-72760448 None:intergenic 45.0%
TGATTGGAGGAACATTGGGA+AGG + chr4_2:72760639-72760658 None:intergenic 45.0%
TGGGAAGCAAGAATGATTGG+AGG + chr4_2:72760652-72760671 None:intergenic 45.0%
GGGAATAAGATTGGGAACGA+TGG + chr4_2:72760820-72760839 None:intergenic 45.0%
! GATGATGTTTAGGGTCCGTT+TGG + chr4_2:72761103-72761122 None:intergenic 45.0%
!! TAACCAACACAAGGAGTGCT+AGG - chr4_2:72761238-72761257 Msa0620960:intron 45.0%
! GTGTATGGGTTTTCCATTGG+GGG + chr4_2:72761306-72761325 None:intergenic 45.0%
! GGTGTATGGGTTTTCCATTG+GGG + chr4_2:72761307-72761326 None:intergenic 45.0%
! GGGTGTATGGGTTTTCCATT+GGG + chr4_2:72761308-72761327 None:intergenic 45.0%
!! TGTTAGGAGGCGTTTCCTAT+AGG + chr4_2:72761357-72761376 None:intergenic 45.0%
TAGGAAACGCCTCCTAACAA+AGG - chr4_2:72761358-72761377 Msa0620960:intron 45.0%
AGGAAACGCCTCCTAACAAA+GGG - chr4_2:72761359-72761378 Msa0620960:intron 45.0%
TTCGGAGATAGCCCTTTGTT+AGG + chr4_2:72761373-72761392 None:intergenic 45.0%
! AGAGCTAATGGTGGTGTTTG+GGG + chr4_2:72761588-72761607 None:intergenic 45.0%
! GAGAGCTAATGGTGGTGTTT+GGG + chr4_2:72761589-72761608 None:intergenic 45.0%
! AAGGTGCTTAGGAGAGCTAA+TGG + chr4_2:72761600-72761619 None:intergenic 45.0%
!!! TGTTTTGGGTGAAGGTGCTT+AGG + chr4_2:72761611-72761630 None:intergenic 45.0%
!! ATGAGGTGTGTTTTGGGTGA+AGG + chr4_2:72761619-72761638 None:intergenic 45.0%
! GTGGTGTTTGTGGTGGTTTT+TGG + chr4_2:72761682-72761701 None:intergenic 45.0%
!! TTTTGTGGTGGTGTTTGTGG+TGG + chr4_2:72761689-72761708 None:intergenic 45.0%
!!! AATGGTAGTTTTGGTGACGG+TGG + chr4_2:72761728-72761747 None:intergenic 45.0%
! GTGGTGGTCAATGGTAGTTT+TGG + chr4_2:72761737-72761756 None:intergenic 45.0%
!!! CTGGTGTTGCTTTTAGGTGA+GGG + chr4_2:72761775-72761794 None:intergenic 45.0%
! GTGATGCTTGTGGTGGTTTT+GGG + chr4_2:72761816-72761835 None:intergenic 45.0%
!! TTTTGTGGTGATGCTTGTGG+TGG + chr4_2:72761823-72761842 None:intergenic 45.0%
!! ATTTTGGGTCTTTTGTGGCG+GGG + chr4_2:72761858-72761877 None:intergenic 45.0%
!! GGTGGTGATGGATCAAATCT+AGG + chr4_2:72761965-72761984 None:intergenic 45.0%
!! CAACATAGGTGGTGATGGAT+CGG + chr4_2:72761995-72762014 None:intergenic 45.0%
GTTACGTTTGCTCGCAACAT+AGG + chr4_2:72762009-72762028 None:intergenic 45.0%
! GTTTTCTCTCTTGGTTGTGG+TGG + chr4_2:72762034-72762053 None:intergenic 45.0%
!!! GGTGGTTGTTTGGTTTTCGT+GGG + chr4_2:72762075-72762094 None:intergenic 45.0%
CACGAAAACCAAACAACCAC+CGG - chr4_2:72762074-72762093 Msa0620960:intron 45.0%
! CGACGGATTTGGAATTTGTG+AGG - chr4_2:72762281-72762300 Msa0620960:intron 45.0%
AGAGGGACCAAAAGTGAAGA+TGG - chr4_2:72762886-72762905 Msa0620960:intron 45.0%
! TTTTCTGCTCGCCGTTGTTT+TGG - chr4_2:72763191-72763210 Msa0620960:intron 45.0%
TATGTGAAGAAGTGGGGAAC+CGG + chr4_2:72763920-72763939 None:intergenic 45.0%
TCATAAACCGTGGTGTTCTC+TGG - chr4_2:72764057-72764076 Msa0620960:intron 45.0%
!! CAGACTTGCTGAAAGAGAGA+AGG + chr4_2:72764121-72764140 None:intergenic 45.0%
TCCGTTTCTGCAATCTTCTC+CGG - chr4_2:72764204-72764223 Msa0620960:intron 45.0%
ACCGGAGAAGATTGCAGAAA+CGG + chr4_2:72764208-72764227 None:intergenic 45.0%
!!! TTAAAAAATTCTAATTTTTT+GGG + chr4_2:72762694-72762713 None:intergenic 5.0%
!!! TTAAAAAATTCTATTTTTTT+TGG - chr4_2:72762783-72762802 Msa0620960:intron 5.0%
!!! TAAAAAATTCTATTTTTTTT+GGG - chr4_2:72762784-72762803 Msa0620960:intron 5.0%
!!! ATTAATTTTAATAGATTATT+AGG - chr4_2:72763317-72763336 Msa0620960:intron 5.0%
!!! TTTTATGAAAAAAAAAATAA+AGG + chr4_2:72763809-72763828 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTGAAAA+TGG + chr4_2:72764009-72764028 None:intergenic 5.0%
CTAGCATCTAACGGTCCGTT+TGG - chr4_2:72760195-72760214 Msa0620960:intron 50.0%
AACGCGCATCCTCTATTCCT+AGG - chr4_2:72760396-72760415 Msa0620960:intron 50.0%
! GAGTCGAAGGAGGTTTTCCT+AGG + chr4_2:72760416-72760435 None:intergenic 50.0%
GTCCGTTTGGTACGCATGAT+AGG + chr4_2:72761090-72761109 None:intergenic 50.0%
TAGCCTAGCACTCCTTGTGT+TGG + chr4_2:72761244-72761263 None:intergenic 50.0%
!! AACACAAGGAGTGCTAGGCT+AGG - chr4_2:72761243-72761262 Msa0620960:intron 50.0%
! CGGGTGTATGGGTTTTCCAT+TGG + chr4_2:72761309-72761328 None:intergenic 50.0%
GGAGATAGCCCTTTGTTAGG+AGG + chr4_2:72761370-72761389 None:intergenic 50.0%
GGCAGTTATGACGATGCTTG+AGG + chr4_2:72761454-72761473 None:intergenic 50.0%
! GGAGAGCTAATGGTGGTGTT+TGG + chr4_2:72761590-72761609 None:intergenic 50.0%
GTGCTTAGGAGAGCTAATGG+TGG + chr4_2:72761597-72761616 None:intergenic 50.0%
!! TTTGGTGACGGTGGTGGTAA+TGG + chr4_2:72761719-72761738 None:intergenic 50.0%
!!! GCTGGTGTTGCTTTTAGGTG+AGG + chr4_2:72761776-72761795 None:intergenic 50.0%
!!! TGGTGGCTGGTGTTGCTTTT+AGG + chr4_2:72761781-72761800 None:intergenic 50.0%
!!! ATGCTTGTGGTGGTTTTGGG+TGG + chr4_2:72761813-72761832 None:intergenic 50.0%
! GGTGATGCTTGTGGTGGTTT+TGG + chr4_2:72761817-72761836 None:intergenic 50.0%
ACGTTTGCTCGCAACATAGG+TGG + chr4_2:72762006-72762025 None:intergenic 50.0%
TTCTCTCTTGGTTGTGGTGG+AGG + chr4_2:72762031-72762050 None:intergenic 50.0%
!!! CGGTGGTTGTTTGGTTTTCG+TGG + chr4_2:72762076-72762095 None:intergenic 50.0%
GATGTTTGCCGGTGGTTGTT+TGG + chr4_2:72762085-72762104 None:intergenic 50.0%
! GTGTGTCGTTGGATGTTTGC+CGG + chr4_2:72762096-72762115 None:intergenic 50.0%
!! TGGGTTTTGTGGTGTGTCGT+TGG + chr4_2:72762107-72762126 None:intergenic 50.0%
!!! TGAGACGTTGGTGGGTTTTG+TGG + chr4_2:72762118-72762137 None:intergenic 50.0%
GTTTCGTTTGGCTGAGACGT+TGG + chr4_2:72762130-72762149 None:intergenic 50.0%
CTCTCTGTCGTCGTAAAGGT+TGG + chr4_2:72762178-72762197 None:intergenic 50.0%
GTTGCTCTCTGTCGTCGTAA+AGG + chr4_2:72762182-72762201 None:intergenic 50.0%
!! GATCTACATGATGACGGCGA+CGG - chr4_2:72762264-72762283 Msa0620960:intron 50.0%
! GAAAGGAGTGCGACGATTCT+AGG - chr4_2:72762306-72762325 Msa0620960:intron 50.0%
!! TTTTTCCCCCTTGGAAGCGT+TGG - chr4_2:72763023-72763042 Msa0620960:intron 50.0%
TCGTTGTCCAACGCTTCCAA+GGG + chr4_2:72763033-72763052 None:intergenic 50.0%
TGGTAGCTGAGCTACACTTC+CGG + chr4_2:72763865-72763884 None:intergenic 50.0%
ATGTGAAGAAGTGGGGAACC+GGG + chr4_2:72763919-72763938 None:intergenic 50.0%
ACGTAGCAGAGAGTCGAAGG+AGG + chr4_2:72760426-72760445 None:intergenic 55.0%
!! TGATGATGGGAAGCCCCCAA+TGG - chr4_2:72761290-72761309 Msa0620960:intron 55.0%
!!! GGTAGTTTTGGTGACGGTGG+TGG + chr4_2:72761725-72761744 None:intergenic 55.0%
!!! GTTTTGGGTGGTGCTATGCG+TGG + chr4_2:72761801-72761820 None:intergenic 55.0%
!!! GGGCTCGTGGTGGTTTTTTG+TGG + chr4_2:72761838-72761857 None:intergenic 55.0%
! ATCGGTCACGATGGTGGTGA+TGG + chr4_2:72761977-72761996 None:intergenic 55.0%
! TGATGGATCGGTCACGATGG+TGG + chr4_2:72761983-72762002 None:intergenic 55.0%
!! TGGTGATGGATCGGTCACGA+TGG + chr4_2:72761986-72762005 None:intergenic 55.0%
GCTCGCAACATAGGTGGTGA+TGG + chr4_2:72762000-72762019 None:intergenic 55.0%
TGTCGTTGGATGTTTGCCGG+TGG + chr4_2:72762093-72762112 None:intergenic 55.0%
CGTTTGGCTGAGACGTTGGT+GGG + chr4_2:72762126-72762145 None:intergenic 55.0%
TCGTTTGGCTGAGACGTTGG+TGG + chr4_2:72762127-72762146 None:intergenic 55.0%
AACCGCACGTCGGAAAGGTA+CGG - chr4_2:72762199-72762218 Msa0620960:intron 55.0%
! AATGGATGGTGGTGCGACGA+GGG + chr4_2:72762243-72762262 None:intergenic 55.0%
! AAATGGATGGTGGTGCGACG+AGG + chr4_2:72762244-72762263 None:intergenic 55.0%
!! CATGATGACGGCGACGGATT+TGG - chr4_2:72762270-72762289 Msa0620960:intron 55.0%
GTTGTCCAACGCTTCCAAGG+GGG + chr4_2:72763031-72763050 None:intergenic 55.0%
CGTTGTCCAACGCTTCCAAG+GGG + chr4_2:72763032-72763051 None:intergenic 55.0%
GTCGTTGTCCAACGCTTCCA+AGG + chr4_2:72763034-72763053 None:intergenic 55.0%
GGTAGCTGAGCTACACTTCC+GGG + chr4_2:72763864-72763883 None:intergenic 55.0%
TGTGAAGAAGTGGGGAACCG+GGG + chr4_2:72763918-72763937 None:intergenic 55.0%
GCACTTGCCAGAGAACACCA+CGG + chr4_2:72764067-72764086 None:intergenic 55.0%
CGGTTGTGGCGTTGTTCACA+TGG + chr4_2:72764162-72764181 None:intergenic 55.0%
!! TAACGGTCCGTTTGGTGCGC+AGG - chr4_2:72760203-72760222 Msa0620960:intron 60.0%
GTGTGCGAGCAGCGGAATGT+GGG + chr4_2:72761496-72761515 None:intergenic 60.0%
TGTGTGCGAGCAGCGGAATG+TGG + chr4_2:72761497-72761516 None:intergenic 60.0%
!! TTGGGTGGTGCTATGCGTGG+TGG + chr4_2:72761798-72761817 None:intergenic 60.0%
GACAGAGAGCAACCGCACGT+CGG - chr4_2:72762189-72762208 Msa0620960:intron 60.0%
AGAGCAACCGCACGTCGGAA+AGG - chr4_2:72762194-72762213 Msa0620960:intron 60.0%
CACCGTACCTTTCCGACGTG+CGG + chr4_2:72762204-72762223 None:intergenic 60.0%
! GTCGGAAAGGTACGGTGGTG+CGG - chr4_2:72762207-72762226 Msa0620960:intron 60.0%
TGCGAGCAGCGGAATGTGGG+TGG + chr4_2:72761493-72761512 None:intergenic 65.0%
CAGCGGTTGTGTGCGAGCAG+CGG + chr4_2:72761504-72761523 None:intergenic 65.0%
!! GTGGTGCTATGCGTGGTGGC+TGG + chr4_2:72761794-72761813 None:intergenic 65.0%
!! TTTTGTGGCGGGGCTCGTGG+TGG + chr4_2:72761848-72761867 None:intergenic 65.0%
!! GTCTTTTGTGGCGGGGCTCG+TGG + chr4_2:72761851-72761870 None:intergenic 65.0%
! CGCACGTCGGAAAGGTACGG+TGG - chr4_2:72762202-72762221 Msa0620960:intron 65.0%
! GGAAAGGTACGGTGGTGCGG+AGG - chr4_2:72762210-72762229 Msa0620960:intron 65.0%
AGAGGTTGGGGCTCGAACCC+CGG - chr4_2:72763898-72763917 Msa0620960:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 72759975 72764248 72759975 ID=Msa0620960;Name=Msa0620960
chr4_2 mRNA 72759975 72764248 72759975 ID=Msa0620960-mRNA-1;Parent=Msa0620960;Name=Msa0620960-mRNA-1;_AED=0.72;_eAED=1.00;_QI=0|0|0|0.33|1|1|3|0|64
chr4_2 exon 72764240 72764248 72764240 ID=Msa0620960-mRNA-1:exon:21787;Parent=Msa0620960-mRNA-1
chr4_2 exon 72764110 72764179 72764110 ID=Msa0620960-mRNA-1:exon:21786;Parent=Msa0620960-mRNA-1
chr4_2 exon 72759975 72760090 72759975 ID=Msa0620960-mRNA-1:exon:21785;Parent=Msa0620960-mRNA-1
chr4_2 CDS 72764240 72764248 72764240 ID=Msa0620960-mRNA-1:cds;Parent=Msa0620960-mRNA-1
chr4_2 CDS 72764110 72764179 72764110 ID=Msa0620960-mRNA-1:cds;Parent=Msa0620960-mRNA-1
chr4_2 CDS 72759975 72760090 72759975 ID=Msa0620960-mRNA-1:cds;Parent=Msa0620960-mRNA-1
Gene Sequence

>Msa0620960

ATGGACCATGGCAATGCTTTTCAATTCGTTGGTTTAGTTCATCCAAATAGGGTTAAGAGAGATAATCATTTTGTATCTACAAGTCTGTTTTGCAACTTATCAAATCCATGTGAACAACGCCACAACCGTTATAAAGCACAAGAAGTTACTTCCGTTTCTGCAATCTTCTCCGGTAAAGATCCTTTAACCCACTAA

Protein sequence

>Msa0620960

MDHGNAFQFVGLVHPNRVKRDNHFVSTSLFCNLSNPCEQRHNRYKAQEVTSVSAIFSGKDPLTH*