AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042920 MtrunA17_Chr1g0208631 94.563 423 16 2 1 419 1 420 0.0 804
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 94 sgRNAs with CRISPR-Local

Find 600 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTGTTCTTTCAATTTA+TGG 0.041976 1_1:+73863788 Msa0042920:CDS
TATGAGCAAGTGCTTGTTAA+TGG 0.171126 1_1:+73866030 Msa0042920:CDS
AGAATCTTGAATTGAGTTTC+TGG 0.180520 1_1:+73857584 Msa0042920:five_prime_UTR
AGAAGAAGAAGAAGCGTTAT+TGG 0.225139 1_1:+73857671 Msa0042920:CDS
TATGTTTAGGAAACTGTATT+TGG 0.250546 1_1:+73857973 Msa0042920:CDS
CTATACATGTATTAACTAAA+TGG 0.262364 1_1:-73866157 None:intergenic
TCAGCTTCTTTCTTATATTC+AGG 0.272953 1_1:-73857897 None:intergenic
CCTCAATCTTGCATTAAATA+AGG 0.285993 1_1:+73858028 Msa0042920:CDS
ATCGGAGTGTTGTTGCAATT+TGG 0.294706 1_1:-73857772 None:intergenic
TTGAAAGAACAAAGCAAGTT+TGG 0.297122 1_1:-73863781 None:intergenic
GTCAATGTCATCCAGATTAA+AGG 0.299429 1_1:+73864607 Msa0042920:intron
CAGAAAATTGTCAATTTACT+TGG 0.300759 1_1:+73862421 Msa0042920:CDS
TGACAAAGAATCTTCTTGTT+AGG 0.306855 1_1:-73858867 None:intergenic
GTGAATTTATTGTCCAAGTC+TGG 0.309921 1_1:+73866182 Msa0042920:three_prime_UTR
GCAGATGCTTGGTTATGTTT+AGG 0.314045 1_1:+73857960 Msa0042920:CDS
AGCTAAGCGAATTGCCTCTT+TGG 0.317543 1_1:+73862710 Msa0042920:CDS
TGCCTCTTTGGCAGCATCAT+TGG 0.328956 1_1:+73862722 Msa0042920:CDS
AATTTGGAGGTTCTGTCGTC+AGG 0.349437 1_1:-73857756 None:intergenic
GGAAGGTGTTATTCTTAATC+AGG 0.352024 1_1:+73862916 Msa0042920:CDS
ATCCAAAGCAATTGCTTCCT+TGG 0.352141 1_1:-73860172 None:intergenic
AATATCTAGAGAACTATGAT+AGG 0.352347 1_1:+73862335 Msa0042920:CDS
ATTTAGCAGTGGTCTGTTCA+TGG 0.356390 1_1:-73866108 None:intergenic
CTTCTGGAGGAACGGAATCT+AGG 0.386506 1_1:-73857809 None:intergenic
ATGCCTAAAGCAAAACTTGA+TGG 0.390052 1_1:-73866263 None:intergenic
ACCCTCTGACAGAAGGTCTA+TGG 0.391113 1_1:-73862868 None:intergenic
ATCTTCTTGACAGATAATCT+TGG 0.396486 1_1:+73861591 Msa0042920:intron
AGGAGTGAGATGGAGAATTC+AGG 0.412289 1_1:+73857636 Msa0042920:exon
TGCCAAGGAAGCAATTGCTT+TGG 0.414023 1_1:+73860170 Msa0042920:CDS
GAATCTTGAATTGAGTTTCT+GGG 0.419034 1_1:+73857585 Msa0042920:five_prime_UTR
GGAGTGTAAAGTTTCACATT+TGG 0.427323 1_1:+73866235 Msa0042920:three_prime_UTR
TTAAACCTCCATTCCATTCG+AGG 0.447738 1_1:+73857616 Msa0042920:five_prime_UTR
ATTTGAGGCTGCTGCTACAA+AGG 0.447761 1_1:+73862369 Msa0042920:CDS
ATCCATCTCTTGCAGATGCT+TGG 0.454455 1_1:+73857949 Msa0042920:CDS
CCAGTTCAAATCTATACGCC+TGG 0.459498 1_1:+73866002 Msa0042920:CDS
TTTAGTTAATACATGTATAG+AGG 0.459577 1_1:+73866160 Msa0042920:three_prime_UTR
AACTATGATAGGGCCCTTAG+TGG 0.461017 1_1:+73862346 Msa0042920:CDS
TAGGGCCCTTAGTGGATTTG+AGG 0.467829 1_1:+73862354 Msa0042920:CDS
TCCTCTGCAGCGTTGAGACC+TGG 0.471479 1_1:-73862394 None:intergenic
TGCGGTTGTTTACCCAGACT+TGG 0.489103 1_1:-73866195 None:intergenic
TTCGTGACGTTGATGTGTCC+TGG 0.490545 1_1:+73864662 Msa0042920:CDS
GCACTATTAAAGTAAAAGTC+AGG 0.491009 1_1:-73861855 None:intergenic
GGAGTGTTGTTGCAATTTGG+AGG 0.491155 1_1:-73857769 None:intergenic
ATTAAAGTAAAAGTCAGGAT+TGG 0.509600 1_1:-73861850 None:intergenic
ATGTACCAGGAGAAGGATGA+AGG 0.511197 1_1:+73861819 Msa0042920:intron
GCAGTATTTGAATATCTTCG+AGG 0.513125 1_1:+73857855 Msa0042920:CDS
ATCTCACTCCTCGAATGGAA+TGG 0.513502 1_1:-73857624 None:intergenic
TGATGTGTCCTGGAAGGAAA+AGG 0.513904 1_1:+73864672 Msa0042920:CDS
CCAGGCGTATAGATTTGAAC+TGG 0.515665 1_1:-73866002 None:intergenic
CAGCAGCCTCAAATCCACTA+AGG 0.523178 1_1:-73862360 None:intergenic
ATTTGGAGGTTCTGTCGTCA+GGG 0.526347 1_1:-73857755 None:intergenic
TCTCCATCTCACTCCTCGAA+TGG 0.528834 1_1:-73857629 None:intergenic
AGCAATTGCTTTGGATGTCA+AGG 0.535720 1_1:+73860179 Msa0042920:CDS
GCACTTGCTCATAGAAATCC+AGG 0.536136 1_1:-73866020 None:intergenic
ATTGCTTTGGATGTCAAGGA+TGG 0.539541 1_1:+73860183 Msa0042920:CDS
TGAATTTATTGTCCAAGTCT+GGG 0.543788 1_1:+73866183 Msa0042920:three_prime_UTR
ATAGAGCTCTAGCAGTAGAC+GGG 0.546155 1_1:+73862895 Msa0042920:CDS
TCAAATACTGCTCGTTGCGT+AGG 0.549837 1_1:-73857843 None:intergenic
CCTTATTTAATGCAAGATTG+AGG 0.551766 1_1:-73858028 None:intergenic
TCTATGGTAACTGTTCTGTA+TGG 0.559486 1_1:-73862852 None:intergenic
AATAGAGCTCTAGCAGTAGA+CGG 0.559874 1_1:+73862894 Msa0042920:CDS
TAGGAGAGTGAGAATGAGAT+CGG 0.560446 1_1:-73857790 None:intergenic
GCTGCTGCTACAAAGGATCC+AGG 0.563147 1_1:+73862376 Msa0042920:CDS
ATTCCATTCGAGGAGTGAGA+TGG 0.563361 1_1:+73857626 Msa0042920:exon
AACCAAGCATCTGCAAGAGA+TGG 0.566217 1_1:-73857951 None:intergenic
AGCCAATGATGCTGCCAAAG+AGG 0.567455 1_1:-73862724 None:intergenic
GTTATTCTTAATCAGGAGTG+AGG 0.569424 1_1:+73862923 Msa0042920:CDS
AGGTCTCAACGCTGCAGAGG+AGG 0.569792 1_1:+73862396 Msa0042920:CDS
AGCAGCCTCAAATCCACTAA+GGG 0.579209 1_1:-73862359 None:intergenic
TGTCAATTTACTTGGCAATG+TGG 0.582046 1_1:+73862429 Msa0042920:CDS
AGCTCTAGCAGTAGACGGGA+AGG 0.584112 1_1:+73862899 Msa0042920:CDS
CAATGTGGACAATCTGTTGA+GGG 0.587451 1_1:+73862444 Msa0042920:CDS
ACATCAACGTCACGAAAACA+AGG 0.587953 1_1:-73864655 None:intergenic
TTGCTTTGGATGTCAAGGAT+GGG 0.590474 1_1:+73860184 Msa0042920:CDS
ATATCTAGAGAACTATGATA+GGG 0.601068 1_1:+73862336 Msa0042920:CDS
ATGTCAAGGATGGGAACTCT+TGG 0.601935 1_1:+73860193 Msa0042920:CDS
TACCATAGACCTTCTGTCAG+AGG 0.606220 1_1:+73862866 Msa0042920:CDS
TGAAAGCATTCAACATGCCA+AGG 0.607329 1_1:+73860155 Msa0042920:CDS
TATTAAGACCCTCTGACAGA+AGG 0.607470 1_1:-73862875 None:intergenic
TGAATATAAGAAAGAAGCTG+AGG 0.609461 1_1:+73857899 Msa0042920:CDS
ACCATAGACCTTCTGTCAGA+GGG 0.609970 1_1:+73862867 Msa0042920:CDS
AGATGGATGAAAAGCAAGCT+CGG 0.610640 1_1:+73857552 Msa0042920:five_prime_UTR
TCCAGGTCTCAACGCTGCAG+AGG 0.614379 1_1:+73862393 Msa0042920:CDS
TTATTCTTAATCAGGAGTGA+GGG 0.616578 1_1:+73862924 Msa0042920:CDS
TCACTCCTCGAATGGAATGG+AGG 0.624288 1_1:-73857621 None:intergenic
TGTACCAGGAGAAGGATGAA+GGG 0.627286 1_1:+73861820 Msa0042920:intron
GAGATGGAGAATTCAGGCAG+CGG 0.643588 1_1:+73857642 Msa0042920:exon
AAGAAGGTAAAGTTCGTCAG+TGG 0.644341 1_1:-73857709 None:intergenic
AATGTCATCCAGATTAAAGG+AGG 0.656874 1_1:+73864610 Msa0042920:intron
TATAGACACTGTATGCGACA+TGG 0.659044 1_1:+73866314 Msa0042920:three_prime_UTR
GCAACTCATCTATTTAGCAG+TGG 0.660935 1_1:-73866119 None:intergenic
TGACGTTGATGTGTCCTGGA+AGG 0.663851 1_1:+73864666 Msa0042920:CDS
GCAATGTGGACAATCTGTTG+AGG 0.671496 1_1:+73862443 Msa0042920:CDS
GATGTACGAATAGCTTGCTG+AGG 0.687153 1_1:-73866066 None:intergenic
TTATGGTGTACGTCATGATG+TGG 0.695610 1_1:+73863805 Msa0042920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAAGATTAAAG+TGG - chr1_1:73858935-73858954 None:intergenic 10.0%
!!! AAGTAAATGTAAATTTTAAA+AGG - chr1_1:73860350-73860369 None:intergenic 10.0%
!!! TTTTTTTTTTTTAGTGAATA+AGG + chr1_1:73860988-73861007 Msa0042920:intron 10.0%
!!! AATTAATAATTACTTTTAGA+TGG + chr1_1:73861093-73861112 Msa0042920:intron 10.0%
!!! ATCTTTTTTTAATAAATAAC+CGG + chr1_1:73861530-73861549 Msa0042920:intron 10.0%
!! CAAATATAGAAATAATATAT+TGG + chr1_1:73862081-73862100 Msa0042920:intron 10.0%
!!! TTTCTTTTAAAAGAAAAAAT+TGG - chr1_1:73862616-73862635 None:intergenic 10.0%
!!! ATTTTTTCTTTTAAAAGAAA+TGG + chr1_1:73862616-73862635 Msa0042920:intron 10.0%
!!! AAATCAAGAATAATTTTTTA+AGG - chr1_1:73863518-73863537 None:intergenic 10.0%
!! TACTTATTGTAAAAAAATAA+TGG + chr1_1:73863966-73863985 Msa0042920:intron 10.0%
!!! TATTTTCTAAAATAAAAGTT+CGG + chr1_1:73864510-73864529 Msa0042920:intron 10.0%
!!! AATATAAATTTTCAAGTTTA+GGG - chr1_1:73864904-73864923 None:intergenic 10.0%
!!! AAATATAAATTTTCAAGTTT+AGG - chr1_1:73864905-73864924 None:intergenic 10.0%
!! ATTAAAAAAAAAACCTAAGA+TGG + chr1_1:73857535-73857554 Msa0042920:five_prime_UTR 15.0%
!! AAAATAGAAATAATAGCATT+TGG - chr1_1:73858203-73858222 None:intergenic 15.0%
!!! TTGTTTTTTTTACTAAAACT+CGG + chr1_1:73858607-73858626 Msa0042920:intron 15.0%
!! TTATGTTATAATTGAATACA+AGG - chr1_1:73859739-73859758 None:intergenic 15.0%
!!! TGAAATTTTAGAGAAAAAAT+TGG + chr1_1:73861260-73861279 Msa0042920:intron 15.0%
!!! GAAATTTTAGAGAAAAAATT+GGG + chr1_1:73861261-73861280 Msa0042920:intron 15.0%
!!! TTAGCATACATTTTATATAA+AGG + chr1_1:73861960-73861979 Msa0042920:intron 15.0%
!! TATTCCTTTATATAAAACAT+GGG - chr1_1:73862224-73862243 None:intergenic 15.0%
!! TTATTCCTTTATATAAAACA+TGG - chr1_1:73862225-73862244 None:intergenic 15.0%
!!! TTATACATTTTATTATGTAC+AGG + chr1_1:73862677-73862696 Msa0042920:intron 15.0%
!!! AATTATTCTTTTGTTATTGT+TGG - chr1_1:73863377-73863396 None:intergenic 15.0%
!! ATTTAAATTAATCATCAAAC+AGG - chr1_1:73863400-73863419 None:intergenic 15.0%
!!! ACAAATGAAAGTTATTATTT+TGG - chr1_1:73863579-73863598 None:intergenic 15.0%
!!! ATTTTCTAAAATAAAAGTTC+GGG + chr1_1:73864511-73864530 Msa0042920:intron 15.0%
!!! ATATAAATTTTCAAGTTTAG+GGG - chr1_1:73864903-73864922 None:intergenic 15.0%
!!! TTTCATTATGTTTTTTTAAG+AGG - chr1_1:73865195-73865214 None:intergenic 15.0%
!!! AATTATATATTTTGACATCT+TGG + chr1_1:73865412-73865431 Msa0042920:intron 15.0%
!!! AAACATAAATTTTCAAATTC+AGG + chr1_1:73865666-73865685 Msa0042920:intron 15.0%
!!! AACATAAATTTTCAAATTCA+GGG + chr1_1:73865667-73865686 Msa0042920:intron 15.0%
!!! ATTAAGGATTAAACTTGTTT+TGG - chr1_1:73858293-73858312 None:intergenic 20.0%
!! CTTAAACTAATTGTATTTAG+TGG + chr1_1:73858369-73858388 Msa0042920:intron 20.0%
!!! TGTTTTTTTTACTAAAACTC+GGG + chr1_1:73858608-73858627 Msa0042920:intron 20.0%
!! TTAGGAATATTTATACTAAC+CGG + chr1_1:73859035-73859054 Msa0042920:intron 20.0%
!! CTTTCTACAATTATAAAATC+TGG - chr1_1:73859221-73859240 None:intergenic 20.0%
!! ATTAAATAAGGATATGTTAG+TGG - chr1_1:73859525-73859544 None:intergenic 20.0%
!! GAAAGGAAATTCATTAAATA+AGG - chr1_1:73859537-73859556 None:intergenic 20.0%
!! TTCCATCAACTATAATTATT+AGG + chr1_1:73859566-73859585 Msa0042920:intron 20.0%
!! TCCATCAACTATAATTATTA+GGG + chr1_1:73859567-73859586 Msa0042920:intron 20.0%
!! TATAATTGAATACAAGGAAT+AGG - chr1_1:73859733-73859752 None:intergenic 20.0%
!! TTATAACATAATTCTAGACT+AGG + chr1_1:73859748-73859767 Msa0042920:intron 20.0%
!!! AGTCAACTTTTATTATAGTA+AGG - chr1_1:73859862-73859881 None:intergenic 20.0%
!! TTACTATAATAAAAGTTGAC+TGG + chr1_1:73859861-73859880 Msa0042920:intron 20.0%
!! TAAATCTAATAGTAGTGAAT+AGG + chr1_1:73861750-73861769 Msa0042920:intron 20.0%
!! AGGCTTATTATTTAAAAATG+TGG + chr1_1:73861770-73861789 Msa0042920:intron 20.0%
!! ACATAATGAAGTAGAATAAA+AGG - chr1_1:73861901-73861920 None:intergenic 20.0%
!! AAGGAATAATATTGAATCTT+TGG + chr1_1:73861979-73861998 Msa0042920:intron 20.0%
!!! CTAAAATTTTGTGCATTTAA+TGG - chr1_1:73862143-73862162 None:intergenic 20.0%
!!! TTAGAGAATATTTCTTCTTT+TGG + chr1_1:73862159-73862178 Msa0042920:intron 20.0%
!!! TTTTGAATTTAACAATAGCA+GGG + chr1_1:73863320-73863339 Msa0042920:intron 20.0%
!! ATATGCAAGCATATATTTAT+TGG + chr1_1:73863426-73863445 Msa0042920:intron 20.0%
!! TAAGGAACATAATTATACAA+AGG - chr1_1:73863500-73863519 None:intergenic 20.0%
!!! GGTATGTATAATTTTTGAAA+AGG - chr1_1:73863544-73863563 None:intergenic 20.0%
!! AAAATATCAATCATGTATGT+TGG + chr1_1:73863607-73863626 Msa0042920:intron 20.0%
!! TCTCAAGAAATTAACATAAA+GGG - chr1_1:73863669-73863688 None:intergenic 20.0%
!! TTCTCAAGAAATTAACATAA+AGG - chr1_1:73863670-73863689 None:intergenic 20.0%
!! TGTAAAAAAATAATGGTAGT+AGG + chr1_1:73863973-73863992 Msa0042920:intron 20.0%
!! TTGAAAAGCTATAAAATAAG+TGG - chr1_1:73864357-73864376 None:intergenic 20.0%
!! AAATAAATATTCAACATGCT+TGG - chr1_1:73864495-73864514 None:intergenic 20.0%
!!! TTTTCTAAAATAAAAGTTCG+GGG + chr1_1:73864512-73864531 Msa0042920:intron 20.0%
!! TGATAACTATAACAGTAATA+AGG - chr1_1:73864555-73864574 None:intergenic 20.0%
!!! TTGAAGTTTTGTTAATTTCA+GGG - chr1_1:73865808-73865827 None:intergenic 20.0%
!!! ATTGAAGTTTTGTTAATTTC+AGG - chr1_1:73865807-73865826 None:intergenic 20.0%
!! TGACTAACAAAAAAATTTGA+CGG - chr1_1:73864828-73864847 None:intergenic 20.0%
!!! TATAAATTTTCAAGTTTAGG+GGG - chr1_1:73864902-73864921 None:intergenic 20.0%
!! TGCTCACAATATAAATATAA+AGG + chr1_1:73865364-73865383 Msa0042920:intron 20.0%
!! CAATATAAATATAAAGGAAG+TGG + chr1_1:73865370-73865389 Msa0042920:intron 20.0%
!! TATCATTAAACTCTAATACA+TGG + chr1_1:73865533-73865552 Msa0042920:intron 20.0%
!!! ACATAAATTTTCAAATTCAG+GGG + chr1_1:73865668-73865687 Msa0042920:intron 20.0%
!!! ATTGAAGTTTTGTTAATTTC+AGG + chr1_1:73865807-73865826 Msa0042920:intron 20.0%
!!! TTGAAGTTTTGTTAATTTCA+GGG + chr1_1:73865808-73865827 Msa0042920:intron 20.0%
!!! TGATTTGTTTTATTACAACA+GGG - chr1_1:73865929-73865948 None:intergenic 20.0%
!!! ATGATTTGTTTTATTACAAC+AGG - chr1_1:73865930-73865949 None:intergenic 20.0%
!! AAAACAAATCATTCTGATTA+AGG + chr1_1:73865938-73865957 Msa0042920:intron 20.0%
!!! TTTTTAAATGTACATGAATG+AGG - chr1_1:73865974-73865993 None:intergenic 20.0%
!! CTATACATGTATTAACTAAA+TGG - chr1_1:73866160-73866179 None:intergenic 20.0%
!! TTTAGTTAATACATGTATAG+AGG + chr1_1:73866160-73866179 Msa0042920:three_prime_UTR 20.0%
! TATGTTTAGGAAACTGTATT+TGG + chr1_1:73857973-73857992 Msa0042920:CDS 25.0%
! ATAGAAATAATAGCATTTGG+AGG - chr1_1:73858200-73858219 None:intergenic 25.0%
! ATGAATATGATCTTAATTCC+TGG + chr1_1:73858230-73858249 Msa0042920:intron 25.0%
! CATAAGCTTTACTAAGATTA+AGG - chr1_1:73858309-73858328 None:intergenic 25.0%
! CTTAATCTTAGTAAAGCTTA+TGG + chr1_1:73858307-73858326 Msa0042920:intron 25.0%
!! AGTGGTTTGTATTTATTTGT+TGG + chr1_1:73858387-73858406 Msa0042920:intron 25.0%
!!! GTTATTGTTTTTACATAAGC+TGG + chr1_1:73858411-73858430 Msa0042920:intron 25.0%
! ATGTTACGTAATTTCTGTAA+TGG + chr1_1:73858465-73858484 Msa0042920:intron 25.0%
! AAAAGAATCTTAACCCATTT+GGG - chr1_1:73858760-73858779 None:intergenic 25.0%
! AAAAAGAATCTTAACCCATT+TGG - chr1_1:73858761-73858780 None:intergenic 25.0%
! ACCCTAATAATTATAGTTGA+TGG - chr1_1:73859571-73859590 None:intergenic 25.0%
!!! ATTAGTTGTGTTGATTTCAA+TGG - chr1_1:73859620-73859639 None:intergenic 25.0%
!!! AAGTGACATTTATTTTGAGA+AGG + chr1_1:73859669-73859688 Msa0042920:intron 25.0%
! CTATTAGTAAGGTTTATGTA+AGG - chr1_1:73859799-73859818 None:intergenic 25.0%
! ATAAAAGAGATAAAGAAACC+TGG + chr1_1:73859892-73859911 Msa0042920:intron 25.0%
! TGATGATTGAAATTGAATCT+AGG + chr1_1:73860416-73860435 Msa0042920:intron 25.0%
!!! GACAAGCATTAAAAGTATTA+AGG - chr1_1:73860483-73860502 None:intergenic 25.0%
! GAAAATTCAGTAATTTGAAC+AGG + chr1_1:73860709-73860728 Msa0042920:intron 25.0%
! TAATTTGAACAGGAGAAAAA+GGG + chr1_1:73860719-73860738 Msa0042920:intron 25.0%
! AATAACTTACTTCTCTTCTT+TGG + chr1_1:73860790-73860809 Msa0042920:intron 25.0%
! ATCTCAAATGAACAAAGAAA+CGG - chr1_1:73860954-73860973 None:intergenic 25.0%
!! TCATCTCTTATTTAAGTTCA+AGG + chr1_1:73861173-73861192 Msa0042920:intron 25.0%
!! ACCACTTAATTTGAGTATTT+AGG + chr1_1:73861223-73861242 Msa0042920:intron 25.0%
! ACCTAAATACTCAAATTAAG+TGG - chr1_1:73861227-73861246 None:intergenic 25.0%
!!! ACAATCAAGGTTCTAAATAA+CGG - chr1_1:73861505-73861524 None:intergenic 25.0%
!!! AAATAACCGGCAATATTTTT+TGG + chr1_1:73861543-73861562 Msa0042920:intron 25.0%
!!! TTTTAAAGAATGTGAAAGTC+TGG - chr1_1:73861664-73861683 None:intergenic 25.0%
! ATTAAAGTAAAAGTCAGGAT+TGG - chr1_1:73861853-73861872 None:intergenic 25.0%
! TAACATTTCCCATAAAACAT+GGG - chr1_1:73862030-73862049 None:intergenic 25.0%
! TTAACATTTCCCATAAAACA+TGG - chr1_1:73862031-73862050 None:intergenic 25.0%
!! ACTACCCATGTTTTATATAA+AGG + chr1_1:73862217-73862236 Msa0042920:intron 25.0%
!!! CTGTCTAAATAATTTGTTAC+AGG + chr1_1:73862306-73862325 Msa0042920:intron 25.0%
! AATATCTAGAGAACTATGAT+AGG + chr1_1:73862335-73862354 Msa0042920:CDS 25.0%
! ATATCTAGAGAACTATGATA+GGG + chr1_1:73862336-73862355 Msa0042920:CDS 25.0%
! CAGAAAATTGTCAATTTACT+TGG + chr1_1:73862421-73862440 Msa0042920:CDS 25.0%
!! TTTTCAATAACTTGATATCC+TGG + chr1_1:73862550-73862569 Msa0042920:intron 25.0%
! AATAGCGAAAAATATGTTTC+TGG - chr1_1:73862976-73862995 None:intergenic 25.0%
! AAATAAGGTTGAAAAGGATA+AGG - chr1_1:73863245-73863264 None:intergenic 25.0%
!! CTTTTGAATTTAACAATAGC+AGG + chr1_1:73863319-73863338 Msa0042920:intron 25.0%
!! CAAGCATATATTTATTGGTT+AGG + chr1_1:73863431-73863450 Msa0042920:intron 25.0%
! GAACATAATTATACAAAGGA+GGG - chr1_1:73863496-73863515 None:intergenic 25.0%
! AAGAAATTAACATAAAGGGA+AGG - chr1_1:73863665-73863684 None:intergenic 25.0%
!! TGCTTTGTTCTTTCAATTTA+TGG + chr1_1:73863788-73863807 Msa0042920:CDS 25.0%
! AAGAGTAAAATTCACTATCT+TGG + chr1_1:73863895-73863914 Msa0042920:intron 25.0%
! ACTATCTTGGATAAATTTCT+AGG + chr1_1:73863908-73863927 Msa0042920:intron 25.0%
! CTATCTTGGATAAATTTCTA+GGG + chr1_1:73863909-73863928 Msa0042920:intron 25.0%
! GCACACTATTATTACATATT+TGG - chr1_1:73864142-73864161 None:intergenic 25.0%
! TTTGTCTACTATAACTTGAT+GGG - chr1_1:73864211-73864230 None:intergenic 25.0%
! ATTTGTCTACTATAACTTGA+TGG - chr1_1:73864212-73864231 None:intergenic 25.0%
!!! GTTCATTTTTCTCTCTTTAT+TGG + chr1_1:73864240-73864259 Msa0042920:intron 25.0%
!!! ATCCTTATTTTCTCTTTGAT+TGG + chr1_1:73864397-73864416 Msa0042920:intron 25.0%
! TTCCAATCAAAGAGAAAATA+AGG - chr1_1:73864402-73864421 None:intergenic 25.0%
! TATAACAGTAATAAGGAAAG+GGG - chr1_1:73864548-73864567 None:intergenic 25.0%
! CTATAACAGTAATAAGGAAA+GGG - chr1_1:73864549-73864568 None:intergenic 25.0%
! ACTATAACAGTAATAAGGAA+AGG - chr1_1:73864550-73864569 None:intergenic 25.0%
! GTTATCAATTGAAGAATCAA+TGG + chr1_1:73864568-73864587 Msa0042920:intron 25.0%
!!! TGAAGTTTTGTTAATTTCAG+GGG - chr1_1:73865809-73865828 None:intergenic 25.0%
! TAACAAAAAAATTTGACGGA+GGG - chr1_1:73864824-73864843 None:intergenic 25.0%
!!! TGATAATGCAATCACTTTTA+AGG - chr1_1:73864938-73864957 None:intergenic 25.0%
!!! GAGTTTTGAACATTATTGTA+GGG - chr1_1:73865049-73865068 None:intergenic 25.0%
!!! TGAGTTTTGAACATTATTGT+AGG - chr1_1:73865050-73865069 None:intergenic 25.0%
! AAAGAAAAAACATCTGATGT+TGG - chr1_1:73865112-73865131 None:intergenic 25.0%
!! TTAGTTCTCTCACTTTATAT+AGG - chr1_1:73865291-73865310 None:intergenic 25.0%
! GTTAATGTTTGATCGTTTAA+GGG + chr1_1:73865555-73865574 Msa0042920:intron 25.0%
!! CATAAATTTTCAAATTCAGG+GGG + chr1_1:73865669-73865688 Msa0042920:intron 25.0%
! TGACTAACAGAAAAATTTGA+CGG + chr1_1:73865744-73865763 Msa0042920:intron 25.0%
!!! TGAAGTTTTGTTAATTTCAG+GGG + chr1_1:73865809-73865828 Msa0042920:intron 25.0%
! ATTGACGAAACTTACAATTT+CGG + chr1_1:73865836-73865855 Msa0042920:intron 25.0%
!! TCAAGAATGTCTTTGAAAAA+AGG - chr1_1:73865882-73865901 None:intergenic 25.0%
AGAATCTTGAATTGAGTTTC+TGG + chr1_1:73857584-73857603 Msa0042920:five_prime_UTR 30.0%
GAATCTTGAATTGAGTTTCT+GGG + chr1_1:73857585-73857604 Msa0042920:five_prime_UTR 30.0%
TCAGCTTCTTTCTTATATTC+AGG - chr1_1:73857900-73857919 None:intergenic 30.0%
TGAATATAAGAAAGAAGCTG+AGG + chr1_1:73857899-73857918 Msa0042920:CDS 30.0%
GGAAACTGTATTTGGAAAAA+AGG + chr1_1:73857981-73858000 Msa0042920:CDS 30.0%
! CCTTATTTAATGCAAGATTG+AGG - chr1_1:73858031-73858050 None:intergenic 30.0%
CCTCAATCTTGCATTAAATA+AGG + chr1_1:73858028-73858047 Msa0042920:CDS 30.0%
TTATGATTGACGAAACATGA+TGG + chr1_1:73858158-73858177 Msa0042920:intron 30.0%
ATCTTAATTCCTGGAACATT+TGG + chr1_1:73858239-73858258 Msa0042920:intron 30.0%
ACATTTGGTATTAGAGTAAG+AGG + chr1_1:73858254-73858273 Msa0042920:intron 30.0%
TCTTAGTAAAGCTTATGGAA+CGG + chr1_1:73858312-73858331 Msa0042920:intron 30.0%
CACTGTTGACAAAAATAGTT+TGG + chr1_1:73858542-73858561 Msa0042920:intron 30.0%
!! GACAAAAATAGTTTGGTTCT+TGG + chr1_1:73858549-73858568 Msa0042920:intron 30.0%
TGATGAGTGATGATAGATAT+TGG + chr1_1:73858829-73858848 Msa0042920:intron 30.0%
! TAGATATTGGTTGTTTATGC+AGG + chr1_1:73858842-73858861 Msa0042920:intron 30.0%
! AGATATTGGTTGTTTATGCA+GGG + chr1_1:73858843-73858862 Msa0042920:intron 30.0%
TGACAAAGAATCTTCTTGTT+AGG - chr1_1:73858870-73858889 None:intergenic 30.0%
! AAGAAGTATGTCTCAAAGTA+AGG + chr1_1:73858905-73858924 Msa0042920:intron 30.0%
!! GTTTTTCAGTTGTCCTAATA+TGG + chr1_1:73858965-73858984 Msa0042920:intron 30.0%
TGTTATGATTGTGTTAGAAC+TGG + chr1_1:73859270-73859289 Msa0042920:intron 30.0%
ATTAATTGTTGAAAAGTCCC+AGG + chr1_1:73859328-73859347 Msa0042920:intron 30.0%
CAGAAGTTACTTATATAGAC+AGG + chr1_1:73859356-73859375 Msa0042920:intron 30.0%
TACTTATATAGACAGGAGTT+AGG + chr1_1:73859363-73859382 Msa0042920:intron 30.0%
ACAAAGAAAAAATGCAAACG+TGG - chr1_1:73859451-73859470 None:intergenic 30.0%
TGATGGAATAGTTAAGTGAA+AGG - chr1_1:73859554-73859573 None:intergenic 30.0%
!!! TGACATTTATTTTGAGAAGG+AGG + chr1_1:73859672-73859691 Msa0042920:intron 30.0%
!!! GACATTTATTTTGAGAAGGA+GGG + chr1_1:73859673-73859692 Msa0042920:intron 30.0%
AATAGGAGAAGATGATTAGA+AGG - chr1_1:73859716-73859735 None:intergenic 30.0%
AACATAATTCTAGACTAGGT+TGG + chr1_1:73859752-73859771 Msa0042920:intron 30.0%
TATGCGGAAAAATGAAAAAC+TGG + chr1_1:73860002-73860021 Msa0042920:intron 30.0%
ATGCGGAAAAATGAAAAACT+GGG + chr1_1:73860003-73860022 Msa0042920:intron 30.0%
TTCAATCATCAGTACATTTC+AGG - chr1_1:73860407-73860426 None:intergenic 30.0%
! TCCTTTTAATATTGTGCTCA+AGG + chr1_1:73860552-73860571 Msa0042920:intron 30.0%
ACCTTGAGCACAATATTAAA+AGG - chr1_1:73860556-73860575 None:intergenic 30.0%
! TTTTTGTTCTCAACGTGAAA+AGG - chr1_1:73860653-73860672 None:intergenic 30.0%
!!! CTGAATTTTCAAGTCTGTAA+CGG - chr1_1:73860699-73860718 None:intergenic 30.0%
GTAATTTGAACAGGAGAAAA+AGG + chr1_1:73860718-73860737 Msa0042920:intron 30.0%
! TCTTTGTTCATTTGAGATTC+TGG + chr1_1:73860956-73860975 Msa0042920:intron 30.0%
! CTTTGTTCATTTGAGATTCT+GGG + chr1_1:73860957-73860976 Msa0042920:intron 30.0%
!! GAATAAGGTTTGTTATCACT+TGG + chr1_1:73861003-73861022 Msa0042920:intron 30.0%
GATGTTAGAACTTTGAACTT+TGG + chr1_1:73861289-73861308 Msa0042920:intron 30.0%
AAAAAGATCTAGCACAATCA+AGG - chr1_1:73861518-73861537 None:intergenic 30.0%
TGAAAGCCAAAAAATATTGC+CGG - chr1_1:73861552-73861571 None:intergenic 30.0%
ATCTTCTTGACAGATAATCT+TGG + chr1_1:73861591-73861610 Msa0042920:intron 30.0%
AAAATGCTGTAAGTATGAAG+AGG + chr1_1:73861691-73861710 Msa0042920:intron 30.0%
TATTGACCAAACATTTGGTT+AGG - chr1_1:73861800-73861819 None:intergenic 30.0%
GTACATATTGACCAAACATT+TGG - chr1_1:73861805-73861824 None:intergenic 30.0%
GCACTATTAAAGTAAAAGTC+AGG - chr1_1:73861858-73861877 None:intergenic 30.0%
TTTCTTAACATTTGCCCTAA+GGG + chr1_1:73862183-73862202 Msa0042920:intron 30.0%
! ATAGTGCACATTTTGTGTAT+TGG + chr1_1:73862267-73862286 Msa0042920:intron 30.0%
!!! TAGTCATCACCTTATTTTGA+GGG + chr1_1:73862643-73862662 Msa0042920:intron 30.0%
TTATTCTTAATCAGGAGTGA+GGG + chr1_1:73862924-73862943 Msa0042920:CDS 30.0%
ATTTCAAAACTCCAGAAAGA+GGG - chr1_1:73863044-73863063 None:intergenic 30.0%
!!! CCATTACTTTTAAAACTGGT+TGG - chr1_1:73863079-73863098 None:intergenic 30.0%
!!! CCAACCAGTTTTAAAAGTAA+TGG + chr1_1:73863076-73863095 Msa0042920:intron 30.0%
!!! CACTCCATTACTTTTAAAAC+TGG - chr1_1:73863083-73863102 None:intergenic 30.0%
! AGGAGGTTTTTAAATGCATT+CGG - chr1_1:73863135-73863154 None:intergenic 30.0%
CTGGAAAAATAAGGTTGAAA+AGG - chr1_1:73863251-73863270 None:intergenic 30.0%
!!! TTTCAACCTTATTTTTCCAG+TGG + chr1_1:73863251-73863270 Msa0042920:intron 30.0%
!!! TTCAACCTTATTTTTCCAGT+GGG + chr1_1:73863252-73863271 Msa0042920:intron 30.0%
!! TTATTTTTCCAGTGGGTATT+GGG + chr1_1:73863259-73863278 Msa0042920:intron 30.0%
GTATCTAATGCAACAAAGAA+AGG + chr1_1:73863456-73863475 Msa0042920:intron 30.0%
AATTATACAAAGGAGGGAAA+AGG - chr1_1:73863490-73863509 None:intergenic 30.0%
GGAACATAATTATACAAAGG+AGG - chr1_1:73863497-73863516 None:intergenic 30.0%
!!! TTATTTTGGAACAATCAGTC+AGG - chr1_1:73863565-73863584 None:intergenic 30.0%
TATCAATCATGTATGTTGGT+AGG + chr1_1:73863611-73863630 Msa0042920:intron 30.0%
ATCAATCATGTATGTTGGTA+GGG + chr1_1:73863612-73863631 Msa0042920:intron 30.0%
TTGAAAGAACAAAGCAAGTT+TGG - chr1_1:73863784-73863803 None:intergenic 30.0%
! ACTCTTTGAAAAACGTTACT+GGG - chr1_1:73863881-73863900 None:intergenic 30.0%
! TACTCTTTGAAAAACGTTAC+TGG - chr1_1:73863882-73863901 None:intergenic 30.0%
CTTGTTTATGTCTACTTTGA+CGG - chr1_1:73864107-73864126 None:intergenic 30.0%
CTTCAGAATTGCGAAATATA+GGG + chr1_1:73864164-73864183 Msa0042920:intron 30.0%
TTGTCTACTATAACTTGATG+GGG - chr1_1:73864210-73864229 None:intergenic 30.0%
!! ATATAATAGAAGCACTTGCT+TGG + chr1_1:73864288-73864307 Msa0042920:intron 30.0%
! TATAGCTTTTCAAAGTAGCT+TGG + chr1_1:73864364-73864383 Msa0042920:intron 30.0%
ATAACAGTAATAAGGAAAGG+GGG - chr1_1:73864547-73864566 None:intergenic 30.0%
ACGAAACTTACAATTTCAGA+GGG - chr1_1:73864731-73864750 None:intergenic 30.0%
!!! AAGTTTTGTTAATTTCAGGG+GGG - chr1_1:73865811-73865830 None:intergenic 30.0%
!!! GAAGTTTTGTTAATTTCAGG+GGG - chr1_1:73865810-73865829 None:intergenic 30.0%
AACAAAAAAATTTGACGGAG+GGG - chr1_1:73864823-73864842 None:intergenic 30.0%
CTAACAAAAAAATTTGACGG+AGG - chr1_1:73864825-73864844 None:intergenic 30.0%
ATTGCATTATCACTGAATTG+TGG + chr1_1:73864946-73864965 Msa0042920:intron 30.0%
ACAACCATATATTGACAGTA+TGG + chr1_1:73864996-73865015 Msa0042920:intron 30.0%
TCTACCATACTGTCAATATA+TGG - chr1_1:73865003-73865022 None:intergenic 30.0%
TAGAACAAATTGGCAGTATT+TGG + chr1_1:73865019-73865038 Msa0042920:intron 30.0%
CACTTTATATAGGATCTTGA+AGG - chr1_1:73865281-73865300 None:intergenic 30.0%
! TTTGACATCTTGGTAATTCT+TGG + chr1_1:73865422-73865441 Msa0042920:intron 30.0%
GTAAAATTACACTTGTCAGA+TGG - chr1_1:73865494-73865513 None:intergenic 30.0%
TAATGATATGAAAGTCAGCA+CGG - chr1_1:73865521-73865540 None:intergenic 30.0%
GGTTAATGTTTGATCGTTTA+AGG + chr1_1:73865554-73865573 Msa0042920:intron 30.0%
ATCGTTTAAGGGAACATATA+TGG + chr1_1:73865566-73865585 Msa0042920:intron 30.0%
!! GCATATTAGCTAAGTTTTGA+CGG - chr1_1:73864970-73864989 None:intergenic 30.0%
ACTGCATTATCACTAAATTG+TGG - chr1_1:73865623-73865642 None:intergenic 30.0%
!!! TGATAATGCAGTCACTTTTA+AGG + chr1_1:73865631-73865650 Msa0042920:intron 30.0%
TAACAGAAAAATTTGACGGA+GGG + chr1_1:73865748-73865767 Msa0042920:intron 30.0%
ATTAACGTTGTGCAATTTCA+GGG + chr1_1:73865780-73865799 Msa0042920:intron 30.0%
!!! GAAGTTTTGTTAATTTCAGG+GGG + chr1_1:73865810-73865829 Msa0042920:intron 30.0%
!!! AAGTTTTGTTAATTTCAGGG+GGG + chr1_1:73865811-73865830 Msa0042920:intron 30.0%
TTGACGAAACTTACAATTTC+GGG + chr1_1:73865837-73865856 Msa0042920:intron 30.0%
TGAATTTATTGTCCAAGTCT+GGG + chr1_1:73866183-73866202 Msa0042920:three_prime_UTR 30.0%
! CAGTTTCTTTTTCTATTCTG+CGG - chr1_1:73866216-73866235 None:intergenic 30.0%
! TTACCATCAAGTTTTGCTTT+AGG + chr1_1:73866260-73866279 Msa0042920:three_prime_UTR 30.0%
!! AGAAGAAGAAGAAGCGTTAT+TGG + chr1_1:73857671-73857690 Msa0042920:CDS 35.0%
GGAAAAATGTATCACGAAGA+AGG - chr1_1:73857728-73857747 None:intergenic 35.0%
!! TTTTCTTTCTTCTGGAGGAA+CGG - chr1_1:73857820-73857839 None:intergenic 35.0%
! GTAGGTGATTTTCTTTCTTC+TGG - chr1_1:73857828-73857847 None:intergenic 35.0%
GCAGTATTTGAATATCTTCG+AGG + chr1_1:73857855-73857874 Msa0042920:CDS 35.0%
GCATTATTGTAATGCGTATG+AGG + chr1_1:73858073-73858092 Msa0042920:intron 35.0%
GTAATCGTGTGCTTATTTAG+AGG + chr1_1:73858135-73858154 Msa0042920:intron 35.0%
ACTCTAATACCAAATGTTCC+AGG - chr1_1:73858251-73858270 None:intergenic 35.0%
!!! TAGTTTGGTTCTTGGTTTTG+TGG + chr1_1:73858557-73858576 Msa0042920:intron 35.0%
! TTTTACTAAAACTCGGGATC+TGG + chr1_1:73858614-73858633 Msa0042920:intron 35.0%
! GGTTAAGATTCTTTTTCCTC+CGG + chr1_1:73858765-73858784 Msa0042920:intron 35.0%
TTTCAGTTGTCCTAATATGG+CGG + chr1_1:73858968-73858987 Msa0042920:intron 35.0%
AAATCAGATTCCGCCATATT+AGG - chr1_1:73858981-73859000 None:intergenic 35.0%
TAAGATCAGTGAAGAAAGGA+CGG - chr1_1:73859018-73859037 None:intergenic 35.0%
TTCCTAAGATCAGTGAAGAA+AGG - chr1_1:73859022-73859041 None:intergenic 35.0%
ATGTAACCAAATCATCTGAC+CGG - chr1_1:73859057-73859076 None:intergenic 35.0%
! AGTGAGATTTTCTCTAGCTA+CGG - chr1_1:73859111-73859130 None:intergenic 35.0%
GAGTCGGCAATTATAAAATC+TGG - chr1_1:73859140-73859159 None:intergenic 35.0%
AAGTAACTTCTGTAACTCCT+GGG - chr1_1:73859348-73859367 None:intergenic 35.0%
TAAGTAACTTCTGTAACTCC+TGG - chr1_1:73859349-73859368 None:intergenic 35.0%
!!! TGTCACTTTTGTATTGTGCA+CGG - chr1_1:73859657-73859676 None:intergenic 35.0%
GAGTAGGCATTCTATTAGTA+AGG - chr1_1:73859810-73859829 None:intergenic 35.0%
AAAGAGATAAAGAAACCTGG+TGG + chr1_1:73859895-73859914 Msa0042920:intron 35.0%
GTGTGCATGATCAAATTCTA+GGG - chr1_1:73859979-73859998 None:intergenic 35.0%
TGTGTGCATGATCAAATTCT+AGG - chr1_1:73859980-73859999 None:intergenic 35.0%
GGAAAAATGAAAAACTGGGA+AGG + chr1_1:73860007-73860026 Msa0042920:intron 35.0%
AGAAACAACTGAGTTGCATA+AGG - chr1_1:73860382-73860401 None:intergenic 35.0%
! GGAAACCAGTTATTCTTTTC+TGG + chr1_1:73860437-73860456 Msa0042920:intron 35.0%
TCAGTCACAAACAATGTACA+AGG - chr1_1:73860505-73860524 None:intergenic 35.0%
GTGCTCAAGGTTTCAAAAAA+CGG + chr1_1:73860565-73860584 Msa0042920:intron 35.0%
AACGTGAAAAGGTCCAAAAA+CGG - chr1_1:73860642-73860661 None:intergenic 35.0%
AACTTACTTCTCTTCTTTGG+TGG + chr1_1:73860793-73860812 Msa0042920:intron 35.0%
AACGAACAAGAAGCAAGAAA+CGG - chr1_1:73860924-73860943 None:intergenic 35.0%
AGAAGATCAGATAGTCAGAT+GGG - chr1_1:73861578-73861597 None:intergenic 35.0%
AAGAAGATCAGATAGTCAGA+TGG - chr1_1:73861579-73861598 None:intergenic 35.0%
!!! TTTTTTTGTCAGTGGAGGTT+GGG + chr1_1:73861632-73861651 Msa0042920:CDS 35.0%
ATGTTTGGTCAATATGTACC+AGG + chr1_1:73861806-73861825 Msa0042920:intron 35.0%
GGATCAAATGCAACTTACAA+TGG - chr1_1:73861880-73861899 None:intergenic 35.0%
ATTTCCCATAAAACATGGGA+AGG - chr1_1:73862026-73862045 None:intergenic 35.0%
!! ATCATTAACTTGTGCCTTGA+GGG - chr1_1:73862060-73862079 None:intergenic 35.0%
!! AATCATTAACTTGTGCCTTG+AGG - chr1_1:73862061-73862080 None:intergenic 35.0%
CTTTCTTAACATTTGCCCTA+AGG + chr1_1:73862182-73862201 Msa0042920:intron 35.0%
TGTCAATTTACTTGGCAATG+TGG + chr1_1:73862429-73862448 Msa0042920:CDS 35.0%
!!! GTAGTCATCACCTTATTTTG+AGG + chr1_1:73862642-73862661 Msa0042920:intron 35.0%
AAATGTACTACAGATGATGC+TGG - chr1_1:73862772-73862791 None:intergenic 35.0%
GATTCATCATGTCTACATTC+TGG + chr1_1:73862815-73862834 Msa0042920:intron 35.0%
TCTATGGTAACTGTTCTGTA+TGG - chr1_1:73862855-73862874 None:intergenic 35.0%
!! GGAAGGTGTTATTCTTAATC+AGG + chr1_1:73862916-73862935 Msa0042920:CDS 35.0%
GTTATTCTTAATCAGGAGTG+AGG + chr1_1:73862923-73862942 Msa0042920:CDS 35.0%
GGTTACAAATGCAAGGAAAT+TGG - chr1_1:73863023-73863042 None:intergenic 35.0%
CATTTCAAAACTCCAGAAAG+AGG - chr1_1:73863045-73863064 None:intergenic 35.0%
! AATGGAGTGACTTGATTTTG+TGG + chr1_1:73863094-73863113 Msa0042920:intron 35.0%
CATAGTATATGCGTATTCAC+AGG - chr1_1:73863155-73863174 None:intergenic 35.0%
CAATACCCACTGGAAAAATA+AGG - chr1_1:73863260-73863279 None:intergenic 35.0%
!! CTTATTTTTCCAGTGGGTAT+TGG + chr1_1:73863258-73863277 Msa0042920:intron 35.0%
TGAAAAAAGTGGTTGGGAAA+GGG + chr1_1:73863294-73863313 Msa0042920:intron 35.0%
! TCAATCATGTATGTTGGTAG+GGG + chr1_1:73863613-73863632 Msa0042920:intron 35.0%
ACTTCTAAGCACATGATCTT+TGG + chr1_1:73864034-73864053 Msa0042920:intron 35.0%
! CATGATCTTTGGTGCAATTA+AGG + chr1_1:73864045-73864064 Msa0042920:intron 35.0%
! TACCACAGCACATGATTTTA+TGG - chr1_1:73864076-73864095 None:intergenic 35.0%
CGTCAAAGTAGACATAAACA+AGG + chr1_1:73864105-73864124 Msa0042920:intron 35.0%
GCTTCAGAATTGCGAAATAT+AGG + chr1_1:73864163-73864182 Msa0042920:intron 35.0%
AGAATTGCGAAATATAGGGT+TGG + chr1_1:73864168-73864187 Msa0042920:intron 35.0%
TAATCTGGATGACATTGACA+GGG - chr1_1:73864606-73864625 None:intergenic 35.0%
TTAATCTGGATGACATTGAC+AGG - chr1_1:73864607-73864626 None:intergenic 35.0%
GTCAATGTCATCCAGATTAA+AGG + chr1_1:73864607-73864626 Msa0042920:intron 35.0%
AATGTCATCCAGATTAAAGG+AGG + chr1_1:73864610-73864629 Msa0042920:intron 35.0%
CGAAACTTACAATTTCAGAG+GGG - chr1_1:73864730-73864749 None:intergenic 35.0%
GACGAAACTTACAATTTCAG+AGG - chr1_1:73864732-73864751 None:intergenic 35.0%
ATTAACGTCGTGCAATTTCA+GGG - chr1_1:73864792-73864811 None:intergenic 35.0%
ACAAAAAAATTTGACGGAGG+GGG - chr1_1:73864822-73864841 None:intergenic 35.0%
ACATAAGTGCAAAACTTCAG+GGG - chr1_1:73865700-73865719 None:intergenic 35.0%
CACATAAGTGCAAAACTTCA+GGG - chr1_1:73865699-73865718 None:intergenic 35.0%
GACAGTATGGTAGAACAAAT+TGG + chr1_1:73865009-73865028 Msa0042920:intron 35.0%
! CATCCTTTTGATCTCTAATG+GGG - chr1_1:73865151-73865170 None:intergenic 35.0%
! CCATCCTTTTGATCTCTAAT+GGG - chr1_1:73865152-73865171 None:intergenic 35.0%
! ACCATCCTTTTGATCTCTAA+TGG - chr1_1:73865153-73865172 None:intergenic 35.0%
ATTAGAGATCAAAAGGATGG+TGG + chr1_1:73865152-73865171 Msa0042920:intron 35.0%
ACCATTCCTTTGAATCCTAA+CGG + chr1_1:73865236-73865255 Msa0042920:intron 35.0%
ATAGGATCTTGAAGGAATCA+TGG - chr1_1:73865273-73865292 None:intergenic 35.0%
!!! GGAAGTGGAAATTTTTTGTG+TGG + chr1_1:73865385-73865404 Msa0042920:intron 35.0%
ACATAAGTGCAAAACTTCAG+TGG + chr1_1:73865700-73865719 Msa0042920:intron 35.0%
CATAAGTGCAAAACTTCAGT+GGG + chr1_1:73865701-73865720 Msa0042920:intron 35.0%
ATAAGTGCAAAACTTCAGTG+GGG + chr1_1:73865702-73865721 Msa0042920:intron 35.0%
CTAACAGAAAAATTTGACGG+AGG + chr1_1:73865747-73865766 Msa0042920:intron 35.0%
AACAGAAAAATTTGACGGAG+GGG + chr1_1:73865749-73865768 Msa0042920:intron 35.0%
GATTAACGTTGTGCAATTTC+AGG + chr1_1:73865779-73865798 Msa0042920:intron 35.0%
TTAACGTTGTGCAATTTCAG+GGG + chr1_1:73865781-73865800 Msa0042920:intron 35.0%
TGACGAAACTTACAATTTCG+GGG + chr1_1:73865838-73865857 Msa0042920:intron 35.0%
! TATGAGCAAGTGCTTGTTAA+TGG + chr1_1:73866030-73866049 Msa0042920:CDS 35.0%
GTGAATTTATTGTCCAAGTC+TGG + chr1_1:73866182-73866201 Msa0042920:three_prime_UTR 35.0%
CGCAGAATAGAAAAAGAAAC+TGG + chr1_1:73866214-73866233 Msa0042920:three_prime_UTR 35.0%
GGAGTGTAAAGTTTCACATT+TGG + chr1_1:73866235-73866254 Msa0042920:three_prime_UTR 35.0%
ATGCCTAAAGCAAAACTTGA+TGG - chr1_1:73866266-73866285 None:intergenic 35.0%
!! GCTTGCTTTTCATCCATCTT+AGG - chr1_1:73857551-73857570 None:intergenic 40.0%
AGATGGATGAAAAGCAAGCT+CGG + chr1_1:73857552-73857571 Msa0042920:five_prime_UTR 40.0%
TTAAACCTCCATTCCATTCG+AGG + chr1_1:73857616-73857635 Msa0042920:five_prime_UTR 40.0%
AAGAAGGTAAAGTTCGTCAG+TGG - chr1_1:73857712-73857731 None:intergenic 40.0%
!! ATCGGAGTGTTGTTGCAATT+TGG - chr1_1:73857775-73857794 None:intergenic 40.0%
TAGGAGAGTGAGAATGAGAT+CGG - chr1_1:73857793-73857812 None:intergenic 40.0%
! GGTGATTTTCTTTCTTCTGG+AGG - chr1_1:73857825-73857844 None:intergenic 40.0%
GCAGATGCTTGGTTATGTTT+AGG + chr1_1:73857960-73857979 Msa0042920:CDS 40.0%
ATGTTTGACACACACGTTCA+CGG - chr1_1:73858347-73858366 None:intergenic 40.0%
GAATCTTAACCCATTTGGGT+TGG - chr1_1:73858756-73858775 None:intergenic 40.0%
GTCCTTTCTTCACTGATCTT+AGG + chr1_1:73859017-73859036 Msa0042920:intron 40.0%
TACTAACCGGTCAGATGATT+TGG + chr1_1:73859048-73859067 Msa0042920:intron 40.0%
TCTAGCTACGGCATAAAGAT+TGG - chr1_1:73859099-73859118 None:intergenic 40.0%
ACGTGGCAGTTATTATGAGA+CGG - chr1_1:73859434-73859453 None:intergenic 40.0%
TGTATTGTGCACGGTTCTTA+AGG - chr1_1:73859648-73859667 None:intergenic 40.0%
! TAATTCTAGACTAGGTTGGC+TGG + chr1_1:73859756-73859775 Msa0042920:intron 40.0%
TGATCATGCACACATGTATG+CGG + chr1_1:73859986-73860005 Msa0042920:intron 40.0%
!! TGAAAGCATTCAACATGCCA+AGG + chr1_1:73860155-73860174 Msa0042920:CDS 40.0%
ATCCAAAGCAATTGCTTCCT+TGG - chr1_1:73860175-73860194 None:intergenic 40.0%
! AGCAATTGCTTTGGATGTCA+AGG + chr1_1:73860179-73860198 Msa0042920:CDS 40.0%
! ATTGCTTTGGATGTCAAGGA+TGG + chr1_1:73860183-73860202 Msa0042920:CDS 40.0%
! TTGCTTTGGATGTCAAGGAT+GGG + chr1_1:73860184-73860203 Msa0042920:CDS 40.0%
GGCAACCAGAAAAGAATAAC+TGG - chr1_1:73860445-73860464 None:intergenic 40.0%
ATTAAGGTAGCAAGTCTCCT+GGG - chr1_1:73860467-73860486 None:intergenic 40.0%
TATTAAGGTAGCAAGTCTCC+TGG - chr1_1:73860468-73860487 None:intergenic 40.0%
CAAGGTTTCAAAAAACGGAC+CGG + chr1_1:73860570-73860589 Msa0042920:intron 40.0%
AAAAGGTCCAAAAACGGTCA+CGG - chr1_1:73860636-73860655 None:intergenic 40.0%
TTACTTCTCTTCTTTGGTGG+TGG + chr1_1:73860796-73860815 Msa0042920:intron 40.0%
GATACAAATAACGGTCTTCG+CGG - chr1_1:73861434-73861453 None:intergenic 40.0%
!! AAGGTTCTAAATAACGGTCG+CGG - chr1_1:73861499-73861518 None:intergenic 40.0%
!!! CTGACGAGTTTTTTTGTCAG+TGG + chr1_1:73861624-73861643 Msa0042920:CDS 40.0%
!!! ACGAGTTTTTTTGTCAGTGG+AGG + chr1_1:73861627-73861646 Msa0042920:CDS 40.0%
!!! GTTTTTTTGTCAGTGGAGGT+TGG + chr1_1:73861631-73861650 Msa0042920:CDS 40.0%
GCTGTAAGTATGAAGAGGAA+TGG + chr1_1:73861696-73861715 Msa0042920:intron 40.0%
GGAAGACCTAACCAAATGTT+TGG + chr1_1:73861791-73861810 Msa0042920:intron 40.0%
GTCTTTGTCAGAGAAGAGTT+TGG + chr1_1:73861925-73861944 Msa0042920:intron 40.0%
! TTCTGCCTTCCCATGTTTTA+TGG + chr1_1:73862018-73862037 Msa0042920:intron 40.0%
! TCTGCCTTCCCATGTTTTAT+GGG + chr1_1:73862019-73862038 Msa0042920:intron 40.0%
! AATGTTAAGTTGTGCCCTCA+AGG + chr1_1:73862043-73862062 Msa0042920:intron 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG - chr1_1:73862200-73862219 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG - chr1_1:73862201-73862220 None:intergenic 40.0%
!! TGCACATTTTGTGTATTGGC+TGG + chr1_1:73862271-73862290 Msa0042920:intron 40.0%
CAATGTGGACAATCTGTTGA+GGG + chr1_1:73862444-73862463 Msa0042920:CDS 40.0%
AATAACTTGATATCCTGGCG+TGG + chr1_1:73862555-73862574 Msa0042920:intron 40.0%
ATAACTTGATATCCTGGCGT+GGG + chr1_1:73862556-73862575 Msa0042920:intron 40.0%
!!! TCATCACCTTATTTTGAGGG+AGG + chr1_1:73862646-73862665 Msa0042920:intron 40.0%
TATTAAGACCCTCTGACAGA+AGG - chr1_1:73862878-73862897 None:intergenic 40.0%
! AATAGAGCTCTAGCAGTAGA+CGG + chr1_1:73862894-73862913 Msa0042920:CDS 40.0%
GAAAGAGGGTTACAAATGCA+AGG - chr1_1:73863030-73863049 None:intergenic 40.0%
TGCATTTGTAACCCTCTTTC+TGG + chr1_1:73863030-73863049 Msa0042920:intron 40.0%
AGTATATGCGTATTCACAGG+AGG - chr1_1:73863152-73863171 None:intergenic 40.0%
TGGAGGTGAAAAAAGTGGTT+GGG + chr1_1:73863288-73863307 Msa0042920:intron 40.0%
GTGAAAAAAGTGGTTGGGAA+AGG + chr1_1:73863293-73863312 Msa0042920:intron 40.0%
GAAAAAAGTGGTTGGGAAAG+GGG + chr1_1:73863295-73863314 Msa0042920:intron 40.0%
TATACAAAGGAGGGAAAAGG+TGG - chr1_1:73863487-73863506 None:intergenic 40.0%
! CAATCATGTATGTTGGTAGG+GGG + chr1_1:73863614-73863633 Msa0042920:intron 40.0%
! AATCATGTATGTTGGTAGGG+GGG + chr1_1:73863615-73863634 Msa0042920:intron 40.0%
TTATGGTGTACGTCATGATG+TGG + chr1_1:73863805-73863824 Msa0042920:CDS 40.0%
GAGAGAATGAATCATGCAAC+TGG - chr1_1:73863942-73863961 None:intergenic 40.0%
GTCCATAAAATCATGTGCTG+TGG + chr1_1:73864071-73864090 Msa0042920:intron 40.0%
AATCTGGATGACATTGACAG+GGG - chr1_1:73864605-73864624 None:intergenic 40.0%
ACATCAACGTCACGAAAACA+AGG - chr1_1:73864658-73864677 None:intergenic 40.0%
! AAAGTGTACCTTTTCCTTCC+AGG - chr1_1:73864683-73864702 None:intergenic 40.0%
TTAACGTCGTGCAATTTCAG+GGG - chr1_1:73864791-73864810 None:intergenic 40.0%
GATTAACGTCGTGCAATTTC+AGG - chr1_1:73864793-73864812 None:intergenic 40.0%
CATAAGTGCAAAACTTCAGG+GGG - chr1_1:73864870-73864889 None:intergenic 40.0%
GCACATAAGTGCAAAACTTC+AGG - chr1_1:73865698-73865717 None:intergenic 40.0%
TTTGATCTCTAATGGGGTGA+AGG - chr1_1:73865145-73865164 None:intergenic 40.0%
TCACCCCATTAGAGATCAAA+AGG + chr1_1:73865145-73865164 Msa0042920:intron 40.0%
CCCATTAGAGATCAAAAGGA+TGG + chr1_1:73865149-73865168 Msa0042920:intron 40.0%
CCATTCCTTTGAATCCTAAC+GGG + chr1_1:73865237-73865256 Msa0042920:intron 40.0%
CATTCCTTTGAATCCTAACG+GGG + chr1_1:73865238-73865257 Msa0042920:intron 40.0%
ATTCCTTTGAATCCTAACGG+GGG + chr1_1:73865239-73865258 Msa0042920:intron 40.0%
! TGAAAGTGAGAGAAGTGTGT+TGG + chr1_1:73865331-73865350 Msa0042920:intron 40.0%
ACAGAAAAATTTGACGGAGG+GGG + chr1_1:73865750-73865769 Msa0042920:intron 40.0%
TAACGTTGTGCAATTTCAGG+GGG + chr1_1:73865782-73865801 Msa0042920:intron 40.0%
GACGAAACTTACAATTTCGG+GGG + chr1_1:73865839-73865858 Msa0042920:intron 40.0%
ACGAAACTTACAATTTCGGG+GGG + chr1_1:73865840-73865859 Msa0042920:intron 40.0%
ATTTAGCAGTGGTCTGTTCA+TGG - chr1_1:73866111-73866130 None:intergenic 40.0%
GCAACTCATCTATTTAGCAG+TGG - chr1_1:73866122-73866141 None:intergenic 40.0%
TATAGACACTGTATGCGACA+TGG + chr1_1:73866314-73866333 Msa0042920:three_prime_UTR 40.0%
ATCTCACTCCTCGAATGGAA+TGG - chr1_1:73857627-73857646 None:intergenic 45.0%
ATTCCATTCGAGGAGTGAGA+TGG + chr1_1:73857626-73857645 Msa0042920:exon 45.0%
AGGAGTGAGATGGAGAATTC+AGG + chr1_1:73857636-73857655 Msa0042920:exon 45.0%
!! TTCTGTCGTCAGGGTTTTGT+GGG - chr1_1:73857749-73857768 None:intergenic 45.0%
ATTTGGAGGTTCTGTCGTCA+GGG - chr1_1:73857758-73857777 None:intergenic 45.0%
AATTTGGAGGTTCTGTCGTC+AGG - chr1_1:73857759-73857778 None:intergenic 45.0%
!! GGAGTGTTGTTGCAATTTGG+AGG - chr1_1:73857772-73857791 None:intergenic 45.0%
TCAAATACTGCTCGTTGCGT+AGG - chr1_1:73857846-73857865 None:intergenic 45.0%
ATCCATCTCTTGCAGATGCT+TGG + chr1_1:73857949-73857968 Msa0042920:CDS 45.0%
AACCAAGCATCTGCAAGAGA+TGG - chr1_1:73857954-73857973 None:intergenic 45.0%
GTGAACGTGTGTGTCAAACA+TGG + chr1_1:73858346-73858365 Msa0042920:intron 45.0%
CTAAGGACTGACTAATCCGA+GGG + chr1_1:73858638-73858657 Msa0042920:intron 45.0%
TAAGGACTGACTAATCCGAG+GGG + chr1_1:73858639-73858658 Msa0042920:intron 45.0%
! TTCTTTTTCCTCCGGAGTCT+TGG + chr1_1:73858773-73858792 Msa0042920:intron 45.0%
!! TAATTGCCGACTCCACTTAG+TGG + chr1_1:73859147-73859166 Msa0042920:intron 45.0%
!! AATTGCCGACTCCACTTAGT+GGG + chr1_1:73859148-73859167 Msa0042920:intron 45.0%
CTTATCCCACTAAGTGGAGT+CGG - chr1_1:73859156-73859175 None:intergenic 45.0%
!!! CGTATTGGTTTTGGCGGATT+GGG - chr1_1:73859403-73859422 None:intergenic 45.0%
!!! ACGTATTGGTTTTGGCGGAT+TGG - chr1_1:73859404-73859423 None:intergenic 45.0%
!!! GGAGTACGTATTGGTTTTGG+CGG - chr1_1:73859409-73859428 None:intergenic 45.0%
!!! GAGGGAGTACGTATTGGTTT+TGG - chr1_1:73859412-73859431 None:intergenic 45.0%
GGCAGTTATTATGAGACGGA+GGG - chr1_1:73859430-73859449 None:intergenic 45.0%
TGGCAGTTATTATGAGACGG+AGG - chr1_1:73859431-73859450 None:intergenic 45.0%
AGGTTTATGTAAGGCGCAGA+GGG - chr1_1:73859790-73859809 None:intergenic 45.0%
AAGGTTTATGTAAGGCGCAG+AGG - chr1_1:73859791-73859810 None:intergenic 45.0%
ACTGCAAGCAATCTGTGAGT+AGG - chr1_1:73859826-73859845 None:intergenic 45.0%
GATAAAGAAACCTGGTGGTC+TGG + chr1_1:73859900-73859919 Msa0042920:intron 45.0%
GTACAGAAACTGCTTGCAAG+CGG + chr1_1:73859930-73859949 Msa0042920:intron 45.0%
GAGCAACGACTAAGGGAAAT+TGG + chr1_1:73860035-73860054 Msa0042920:intron 45.0%
TGCCAAGGAAGCAATTGCTT+TGG + chr1_1:73860170-73860189 Msa0042920:CDS 45.0%
ATGTCAAGGATGGGAACTCT+TGG + chr1_1:73860193-73860212 Msa0042920:CDS 45.0%
!!! TATTCTTTTCTGGTTGCCCC+AGG + chr1_1:73860447-73860466 Msa0042920:intron 45.0%
TTAAGGTAGCAAGTCTCCTG+GGG - chr1_1:73860466-73860485 None:intergenic 45.0%
TTCAAAAAACGGACCGGTAC+CGG + chr1_1:73860576-73860595 Msa0042920:intron 45.0%
!! CTGCCGATACCGATTTGTAA+CGG - chr1_1:73860610-73860629 None:intergenic 45.0%
CAAGTCTGTAACGGCTGTAA+CGG - chr1_1:73860690-73860709 None:intergenic 45.0%
TTGCGCATACGTGTGTGTAT+TGG - chr1_1:73861032-73861051 None:intergenic 45.0%
GGACGCTGCGATACAAATAA+CGG - chr1_1:73861443-73861462 None:intergenic 45.0%
CGTTAAGGTTGTCGCGATTT+CGG - chr1_1:73861473-73861492 None:intergenic 45.0%
GGTCAATATGTACCAGGAGA+AGG + chr1_1:73861812-73861831 Msa0042920:intron 45.0%
ATGTACCAGGAGAAGGATGA+AGG + chr1_1:73861819-73861838 Msa0042920:intron 45.0%
TGTACCAGGAGAAGGATGAA+GGG + chr1_1:73861820-73861839 Msa0042920:intron 45.0%
AACTATGATAGGGCCCTTAG+TGG + chr1_1:73862346-73862365 Msa0042920:CDS 45.0%
AGCAGCCTCAAATCCACTAA+GGG - chr1_1:73862362-73862381 None:intergenic 45.0%
! ATTTGAGGCTGCTGCTACAA+AGG + chr1_1:73862369-73862388 Msa0042920:CDS 45.0%
GCAATGTGGACAATCTGTTG+AGG + chr1_1:73862443-73862462 Msa0042920:CDS 45.0%
TAACTTGATATCCTGGCGTG+GGG + chr1_1:73862557-73862576 Msa0042920:intron 45.0%
AAGCTGCCTCCCTCAAAATA+AGG - chr1_1:73862655-73862674 None:intergenic 45.0%
AGCTAAGCGAATTGCCTCTT+TGG + chr1_1:73862710-73862729 Msa0042920:CDS 45.0%
TACCATAGACCTTCTGTCAG+AGG + chr1_1:73862866-73862885 Msa0042920:CDS 45.0%
ACCATAGACCTTCTGTCAGA+GGG + chr1_1:73862867-73862886 Msa0042920:CDS 45.0%
! ATAGAGCTCTAGCAGTAGAC+GGG + chr1_1:73862895-73862914 Msa0042920:CDS 45.0%
! TCTGGAGCAGAAGACTTACA+GGG - chr1_1:73862958-73862977 None:intergenic 45.0%
!! TTCTGGAGCAGAAGACTTAC+AGG - chr1_1:73862959-73862978 None:intergenic 45.0%
!!! TTTTCCAGTGGGTATTGGGT+TGG + chr1_1:73863263-73863282 Msa0042920:intron 45.0%
!! TTTCCAGTGGGTATTGGGTT+GGG + chr1_1:73863264-73863283 Msa0042920:intron 45.0%
GTGGAGGTGAAAAAAGTGGT+TGG + chr1_1:73863287-73863306 Msa0042920:intron 45.0%
!! TTAACAATAGCAGGGCATCG+TGG + chr1_1:73863328-73863347 Msa0042920:intron 45.0%
! GCCATAAACGCTGCTTTAGA+GGG + chr1_1:73863350-73863369 Msa0042920:intron 45.0%
!! TCCCTCTAAAGCAGCGTTTA+TGG - chr1_1:73863354-73863373 None:intergenic 45.0%
CTTGCAGTCTTCGCAGAAAT+TGG + chr1_1:73863698-73863717 Msa0042920:intron 45.0%
! TGATGGGGTCTTATATCAGC+TGG - chr1_1:73864195-73864214 None:intergenic 45.0%
GCTGATCTCCTCCTTTAATC+TGG - chr1_1:73864621-73864640 None:intergenic 45.0%
TGATGTGTCCTGGAAGGAAA+AGG + chr1_1:73864672-73864691 Msa0042920:CDS 45.0%
TAACGTCGTGCAATTTCAGG+GGG - chr1_1:73864790-73864809 None:intergenic 45.0%
CCCGTTAGGATTCAAAGGAA+TGG - chr1_1:73865240-73865259 None:intergenic 45.0%
TTCCTTTGAATCCTAACGGG+GGG + chr1_1:73865240-73865259 Msa0042920:intron 45.0%
! AAGTGAGAGAAGTGTGTTGG+TGG + chr1_1:73865334-73865353 Msa0042920:intron 45.0%
CCAGGCGTATAGATTTGAAC+TGG - chr1_1:73866005-73866024 None:intergenic 45.0%
CCAGTTCAAATCTATACGCC+TGG + chr1_1:73866002-73866021 Msa0042920:CDS 45.0%
GCACTTGCTCATAGAAATCC+AGG - chr1_1:73866023-73866042 None:intergenic 45.0%
!! GATGTACGAATAGCTTGCTG+AGG - chr1_1:73866069-73866088 None:intergenic 45.0%
TCACTCCTCGAATGGAATGG+AGG - chr1_1:73857624-73857643 None:intergenic 50.0%
TCTCCATCTCACTCCTCGAA+TGG - chr1_1:73857632-73857651 None:intergenic 50.0%
GAGATGGAGAATTCAGGCAG+CGG + chr1_1:73857642-73857661 Msa0042920:exon 50.0%
! GTTCTGTCGTCAGGGTTTTG+TGG - chr1_1:73857750-73857769 None:intergenic 50.0%
! CTTCTGGAGGAACGGAATCT+AGG - chr1_1:73857812-73857831 None:intergenic 50.0%
AAAACTCGGGATCTGGCCTA+AGG + chr1_1:73858621-73858640 Msa0042920:intron 50.0%
!! CCTCGGATTAGTCAGTCCTT+AGG - chr1_1:73858640-73858659 None:intergenic 50.0%
CCTAAGGACTGACTAATCCG+AGG + chr1_1:73858637-73858656 Msa0042920:intron 50.0%
ACCACTAGGCCAACCCAAAT+GGG + chr1_1:73858744-73858763 Msa0042920:intron 50.0%
AAGTGAAACCAAGACTCCGG+AGG - chr1_1:73858784-73858803 None:intergenic 50.0%
CCGAAGTGAAACCAAGACTC+CGG - chr1_1:73858787-73858806 None:intergenic 50.0%
CCGGAGTCTTGGTTTCACTT+CGG + chr1_1:73858784-73858803 Msa0042920:intron 50.0%
CGGAGTCTTGGTTTCACTTC+GGG + chr1_1:73858785-73858804 Msa0042920:intron 50.0%
CAGTGAAGAAAGGACGGATG+AGG - chr1_1:73859012-73859031 None:intergenic 50.0%
CGACTCCACTTAGTGGGATA+AGG + chr1_1:73859154-73859173 Msa0042920:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_1:73859162-73859181 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_1:73859159-73859178 Msa0042920:intron 50.0%
ACAGATTGCTTGCAGTCGAC+TGG + chr1_1:73859830-73859849 Msa0042920:intron 50.0%
!! AACCTGGTGGTCTGGTCTTA+AGG + chr1_1:73859908-73859927 Msa0042920:intron 50.0%
TACCTTAAGACCAGACCACC+AGG - chr1_1:73859913-73859932 None:intergenic 50.0%
AGGAGAGTGAGCAACGACTA+AGG + chr1_1:73860027-73860046 Msa0042920:intron 50.0%
GGAGAGTGAGCAACGACTAA+GGG + chr1_1:73860028-73860047 Msa0042920:intron 50.0%
ACCTGATTTCGCAGCAAGCA+CGG - chr1_1:73860109-73860128 None:intergenic 50.0%
TCAAAAAACGGACCGGTACC+GGG + chr1_1:73860577-73860596 Msa0042920:intron 50.0%
ATTTGTAACGGCCGCAATCC+CGG - chr1_1:73860598-73860617 None:intergenic 50.0%
GGATTGCGGCCGTTACAAAT+CGG + chr1_1:73860598-73860617 Msa0042920:intron 50.0%
CGGCCGTTACAAATCGGTAT+CGG + chr1_1:73860604-73860623 Msa0042920:intron 50.0%
ATCGCAAATCGCAAGCAGGA+AGG - chr1_1:73860891-73860910 None:intergenic 50.0%
CAGAATCGCAAATCGCAAGC+AGG - chr1_1:73860895-73860914 None:intergenic 50.0%
CTGCTTGCGATTTGCGATTC+TGG + chr1_1:73860893-73860912 Msa0042920:intron 50.0%
TGTCGCGATTTCGGCTGTAA+CGG - chr1_1:73861464-73861483 None:intergenic 50.0%
TGATCCCTTCATCCTTCTCC+TGG - chr1_1:73861827-73861846 None:intergenic 50.0%
!! TAGGGCCCTTAGTGGATTTG+AGG + chr1_1:73862354-73862373 Msa0042920:CDS 50.0%
CAGCAGCCTCAAATCCACTA+AGG - chr1_1:73862363-73862382 None:intergenic 50.0%
AACTTGATATCCTGGCGTGG+GGG + chr1_1:73862558-73862577 Msa0042920:intron 50.0%
TGCCTCTTTGGCAGCATCAT+TGG + chr1_1:73862722-73862741 Msa0042920:CDS 50.0%
AGCCAATGATGCTGCCAAAG+AGG - chr1_1:73862727-73862746 None:intergenic 50.0%
ACCCTCTGACAGAAGGTCTA+TGG - chr1_1:73862871-73862890 None:intergenic 50.0%
CTGGAGCAGAAGACTTACAG+GGG - chr1_1:73862957-73862976 None:intergenic 50.0%
!! TTCCAGTGGGTATTGGGTTG+GGG + chr1_1:73863265-73863284 Msa0042920:intron 50.0%
TGGGGTGGAGGTGAAAAAAG+TGG + chr1_1:73863283-73863302 Msa0042920:intron 50.0%
! GGCCATAAACGCTGCTTTAG+AGG + chr1_1:73863349-73863368 Msa0042920:intron 50.0%
GTCTTCGCAGAAATTGGACC+TGG + chr1_1:73863704-73863723 Msa0042920:intron 50.0%
TTCGTGACGTTGATGTGTCC+TGG + chr1_1:73864662-73864681 Msa0042920:CDS 50.0%
TGACGTTGATGTGTCCTGGA+AGG + chr1_1:73864666-73864685 Msa0042920:CDS 50.0%
AACGTCGTGCAATTTCAGGG+GGG - chr1_1:73864789-73864808 None:intergenic 50.0%
TTCCCCCCGTTAGGATTCAA+AGG - chr1_1:73865245-73865264 None:intergenic 50.0%
TGCGGTTGTTTACCCAGACT+TGG - chr1_1:73866198-73866217 None:intergenic 50.0%
AATCCCAACCGTCCACTTCC+CGG + chr1_1:73858665-73858684 Msa0042920:intron 55.0%
CTTCGAGTGTGGTCCTCTCA+AGG - chr1_1:73858711-73858730 None:intergenic 55.0%
CTTGAGAGGACCACACTCGA+AGG + chr1_1:73858709-73858728 Msa0042920:intron 55.0%
!! TGGCCTAGTGGTGTTGGCTT+CGG - chr1_1:73858736-73858755 None:intergenic 55.0%
!! TTGGGTTGGCCTAGTGGTGT+TGG - chr1_1:73858742-73858761 None:intergenic 55.0%
CACCACTAGGCCAACCCAAA+TGG + chr1_1:73858743-73858762 Msa0042920:intron 55.0%
!! ACCCATTTGGGTTGGCCTAG+TGG - chr1_1:73858748-73858767 None:intergenic 55.0%
!!! TTTTGGCGGATTGGGAGAGG+AGG - chr1_1:73859395-73859414 None:intergenic 55.0%
!!! TGGTTTTGGCGGATTGGGAG+AGG - chr1_1:73859398-73859417 None:intergenic 55.0%
! GAGACGGAGGGAGTACGTAT+TGG - chr1_1:73859418-73859437 None:intergenic 55.0%
GTAAGGCGCAGAGGGTCAAT+GGG - chr1_1:73859782-73859801 None:intergenic 55.0%
TGTAAGGCGCAGAGGGTCAA+TGG - chr1_1:73859783-73859802 None:intergenic 55.0%
! ACCGTGCTTGCTGCGAAATC+AGG + chr1_1:73860105-73860124 Msa0042920:intron 55.0%
! GCTTGCTGCGAAATCAGGTG+CGG + chr1_1:73860110-73860129 Msa0042920:intron 55.0%
AGGTCCAAAAACGGTCACGG+TGG - chr1_1:73860633-73860652 None:intergenic 55.0%
GCTGCTGCTACAAAGGATCC+AGG + chr1_1:73862376-73862395 Msa0042920:CDS 55.0%
GAAAAAGAATCCCCCACGCC+AGG - chr1_1:73862571-73862590 None:intergenic 55.0%
! AGCTCTAGCAGTAGACGGGA+AGG + chr1_1:73862899-73862918 Msa0042920:CDS 55.0%
ATGGTCTTCTTCCCCCCGTT+AGG - chr1_1:73865254-73865273 None:intergenic 55.0%
ACGGTTGGGATTGGACCCCT+CGG - chr1_1:73858657-73858676 None:intergenic 60.0%
GGGAAGTGGACGGTTGGGAT+TGG - chr1_1:73858666-73858685 None:intergenic 60.0%
TGGCTTCGGACCTTCGAGTG+TGG - chr1_1:73858722-73858741 None:intergenic 60.0%
GGTCCGAAGCCAACACCACT+AGG + chr1_1:73858730-73858749 Msa0042920:intron 60.0%
! GCAGCCACCGTGACCGTTTT+TGG + chr1_1:73860626-73860645 Msa0042920:intron 60.0%
TAACGGTCGCGGTCGCGTTA+AGG - chr1_1:73861488-73861507 None:intergenic 60.0%
TCCAGGTCTCAACGCTGCAG+AGG + chr1_1:73862393-73862412 Msa0042920:CDS 60.0%
! TCCTCTGCAGCGTTGAGACC+TGG - chr1_1:73862397-73862416 None:intergenic 60.0%
AGGTCTCAACGCTGCAGAGG+AGG + chr1_1:73862396-73862415 Msa0042920:CDS 60.0%
CACCCCAACCCAATACCCAC+TGG - chr1_1:73863270-73863289 None:intergenic 60.0%
!! CAGTGGGTATTGGGTTGGGG+TGG + chr1_1:73863268-73863287 Msa0042920:intron 60.0%
!! TGGGTATTGGGTTGGGGTGG+AGG + chr1_1:73863271-73863290 Msa0042920:intron 60.0%
!! GGCGGATTGGGAGAGGAGGA+AGG - chr1_1:73859391-73859410 None:intergenic 65.0%
! ACGGACCGGTACCGGGATTG+CGG + chr1_1:73860584-73860603 Msa0042920:intron 65.0%
AACGGCCGCAATCCCGGTAC+CGG - chr1_1:73860592-73860611 None:intergenic 65.0%
CCGCCGGGAAGTGGACGGTT+GGG - chr1_1:73858671-73858690 None:intergenic 70.0%
CCCAACCGTCCACTTCCCGG+CGG + chr1_1:73858668-73858687 Msa0042920:intron 70.0%
CCAACCGTCCACTTCCCGGC+GGG + chr1_1:73858669-73858688 Msa0042920:intron 70.0%
CAACCGTCCACTTCCCGGCG+GGG + chr1_1:73858670-73858689 Msa0042920:intron 70.0%
AACCGTCCACTTCCCGGCGG+GGG + chr1_1:73858671-73858690 Msa0042920:intron 70.0%
GGGGGGGGGATGACCTTGAG+AGG + chr1_1:73858695-73858714 Msa0042920:intron 70.0%
CCCGCCGGGAAGTGGACGGT+TGG - chr1_1:73858672-73858691 None:intergenic 75.0%
ACCGTCCACTTCCCGGCGGG+GGG + chr1_1:73858672-73858691 Msa0042920:intron 75.0%
! CCCCCCCGCCGGGAAGTGGA+CGG - chr1_1:73858676-73858695 None:intergenic 80.0%
! CCGTCCACTTCCCGGCGGGG+GGG + chr1_1:73858673-73858692 Msa0042920:intron 80.0%
! CGTCCACTTCCCGGCGGGGG+GGG + chr1_1:73858674-73858693 Msa0042920:intron 80.0%
! GTCCACTTCCCGGCGGGGGG+GGG + chr1_1:73858675-73858694 Msa0042920:intron 80.0%
! TCCACTTCCCGGCGGGGGGG+GGG + chr1_1:73858676-73858695 Msa0042920:intron 80.0%
! CCACTTCCCGGCGGGGGGGG+GGG + chr1_1:73858677-73858696 Msa0042920:intron 85.0%
! CACTTCCCGGCGGGGGGGGG+GGG + chr1_1:73858678-73858697 Msa0042920:intron 85.0%
! ACTTCCCGGCGGGGGGGGGG+GGG + chr1_1:73858679-73858698 Msa0042920:intron 85.0%
! CCCCCCCCCCCGCCGGGAAG+TGG - chr1_1:73858680-73858699 None:intergenic 90.0%
! CTTCCCGGCGGGGGGGGGGG+GGG + chr1_1:73858680-73858699 Msa0042920:intron 90.0%
! TTCCCGGCGGGGGGGGGGGG+GGG + chr1_1:73858681-73858700 Msa0042920:intron 90.0%
! ATCCCCCCCCCCCCCCCGCC+GGG - chr1_1:73858686-73858705 None:intergenic 90.0%
! CATCCCCCCCCCCCCCCCGC+CGG - chr1_1:73858687-73858706 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73857530 73866498 73857530 ID=Msa0042920;Name=Msa0042920
chr1_1 mRNA 73857530 73866498 73857530 ID=Msa0042920-mRNA-1;Parent=Msa0042920;Name=Msa0042920-mRNA-1;_AED=0.11;_eAED=0.11;_QI=115|0.9|0.90|1|1|1|11|385|419
chr1_1 exon 73857530 73858049 73857530 ID=Msa0042920-mRNA-1:exon:24728;Parent=Msa0042920-mRNA-1
chr1_1 exon 73858864 73858909 73858864 ID=Msa0042920-mRNA-1:exon:24729;Parent=Msa0042920-mRNA-1
chr1_1 exon 73860127 73860216 73860127 ID=Msa0042920-mRNA-1:exon:24730;Parent=Msa0042920-mRNA-1
chr1_1 exon 73861604 73861698 73861604 ID=Msa0042920-mRNA-1:exon:24731;Parent=Msa0042920-mRNA-1
chr1_1 exon 73861828 73861881 73861828 ID=Msa0042920-mRNA-1:exon:24732;Parent=Msa0042920-mRNA-1
chr1_1 exon 73862328 73862465 73862328 ID=Msa0042920-mRNA-1:exon:24733;Parent=Msa0042920-mRNA-1
chr1_1 exon 73862699 73862756 73862699 ID=Msa0042920-mRNA-1:exon:24734;Parent=Msa0042920-mRNA-1
chr1_1 exon 73862844 73862958 73862844 ID=Msa0042920-mRNA-1:exon:24735;Parent=Msa0042920-mRNA-1
chr1_1 exon 73863757 73863826 73863757 ID=Msa0042920-mRNA-1:exon:24736;Parent=Msa0042920-mRNA-1
chr1_1 exon 73864622 73864693 73864622 ID=Msa0042920-mRNA-1:exon:24737;Parent=Msa0042920-mRNA-1
chr1_1 exon 73865997 73866498 73865997 ID=Msa0042920-mRNA-1:exon:24738;Parent=Msa0042920-mRNA-1
chr1_1 five_prime_UTR 73857530 73857644 73857530 ID=Msa0042920-mRNA-1:five_prime_utr;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73857645 73858049 73857645 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73858864 73858909 73858864 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73860127 73860216 73860127 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73861604 73861698 73861604 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73861828 73861881 73861828 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73862328 73862465 73862328 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73862699 73862756 73862699 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73862844 73862958 73862844 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73863757 73863826 73863757 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73864622 73864693 73864622 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 CDS 73865997 73866113 73865997 ID=Msa0042920-mRNA-1:cds;Parent=Msa0042920-mRNA-1
chr1_1 three_prime_UTR 73866114 73866498 73866114 ID=Msa0042920-mRNA-1:three_prime_utr;Parent=Msa0042920-mRNA-1
Gene Sequence

>Msa0042920

ATGGAGAATTCAGGCAGCGGCGAAGTAGAAGAAGAAGAAGCGTTATTGGTGAAAGCTGCAAAATCCACTGACGAACTTTACCTTCTTCGTGATACATTTTTCCCACAAAACCCTGACGACAGAACCTCCAAATTGCAACAACACTCCGATCTCATTCTCACTCTCCTAGATTCCGTTCCTCCAGAAGAAAGAAAATCACCTACGCAACGAGCAGTATTTGAATATCTTCGAGGAAAAGTGTTAGATGTATTTCCTGAATATAAGAAAGAAGCTGAGGATCATCTATCAAAAGCTGTTAAGTTGAATCCATCTCTTGCAGATGCTTGGTTATGTTTAGGAAACTGTATTTGGAAAAAAGGTGATTTATCTGCTGCTAAAAACTGCCTCAATCTTGCATTAAATAAGGGTCCTAACAAGAAGATTCTTTGTCAATTATCAATGCTTAAAAGAAGTGCGGATAATCAAGCTGAACTCGTTGATGAAAGCATTCAACATGCCAAGGAAGCAATTGCTTTGGATGTCAAGGATGGGAACTCTTGGTATAATCTTGGAAATGCATATCTGACGAGTTTTTTTGTCAGTGGAGGTTGGGATCATACCAGACTTTCACATTCTTTAAAAGCATATCAAAATGCTGAGAAGGATGAAGGGATCAAGTCCAATCCTGACTTTTACTTTAATAGTGCCATTGCTAACAAATATCTAGAGAACTATGATAGGGCCCTTAGTGGATTTGAGGCTGCTGCTACAAAGGATCCAGGTCTCAACGCTGCAGAGGAGGTTCAGAAAATTGTCAATTTACTTGGCAATGTGGACAATCTGTTGAGGGTACATGTAAGAGCTAAGCGAATTGCCTCTTTGGCAGCATCATTGGCTGCTGTAAATTTGAAATCGCCATACAGAACAGTTACCATAGACCTTCTGTCAGAGGGTCTTAATAGAGCTCTAGCAGTAGACGGGAAGGTGTTATTCTTAATCAGGAGTGAGGGTGTTGCTCCCCTATACTATTTGCTGTGTGATTCAAACCAAACTTGCTTTGTTCTTTCAATTTATGGTGTACGTCATGATGTGATTAAAGGAGGAGATCAGCTCACATTGCTTGATCCTTGTTTTCGTGACGTTGATGTGTCCTGGAAGGAAAAGCATTACCAGTTCAAATCTATACGCCTGGATTTCTATGAGCAAGTGCTTGTTAATGGAAATGCTCTGACTCCTCAGCAAGCTATTCGTACATCGATATACGCACAACATAAACCATGA

Protein sequence

>Msa0042920

MENSGSGEVEEEEALLVKAAKSTDELYLLRDTFFPQNPDDRTSKLQQHSDLILTLLDSVPPEERKSPTQRAVFEYLRGKVLDVFPEYKKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLSAAKNCLNLALNKGPNKKILCQLSMLKRSADNQAELVDESIQHAKEAIALDVKDGNSWYNLGNAYLTSFFVSGGWDHTRLSHSLKAYQNAEKDEGIKSNPDFYFNSAIANKYLENYDRALSGFEAAATKDPGLNAAEEVQKIVNLLGNVDNLLRVHVRAKRIASLAASLAAVNLKSPYRTVTIDLLSEGLNRALAVDGKVLFLIRSEGVAPLYYLLCDSNQTCFVLSIYGVRHDVIKGGDQLTLLDPCFRDVDVSWKEKHYQFKSIRLDFYEQVLVNGNALTPQQAIRTSIYAQHKP*