Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767500 | XP_003614194.2 | 98.338 | 361 | 6 | 0 | 1 | 361 | 1 | 361 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767500 | sp|A0A061DM17|MTR3_THECC | 69.914 | 349 | 104 | 1 | 1 | 348 | 1 | 349 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767500 | G7JWX2 | 98.338 | 361 | 6 | 0 | 1 | 361 | 61 | 421 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074750 | Msa0767500 | 0.800858 | 1.183228e-48 | -8.615850e-47 |
| Msa0677530 | Msa0767500 | 0.820645 | 6.148739e-53 | -8.615850e-47 |
| Msa0727530 | Msa0767500 | 0.923588 | 2.179278e-89 | -8.615850e-47 |
| Msa0752700 | Msa0767500 | 0.814257 | 1.689490e-51 | -8.615850e-47 |
| Msa0767500 | Msa0794970 | 0.809182 | 2.147519e-50 | -8.615850e-47 |
| Msa0767500 | Msa0831100 | 0.826381 | 2.798382e-54 | -8.615850e-47 |
| Msa0767500 | Msa0847410 | 0.850576 | 1.553127e-60 | -8.615850e-47 |
| Msa0767500 | Msa1128270 | 0.810554 | 1.087831e-50 | -8.615850e-47 |
| Msa0767500 | Msa1128280 | 0.803531 | 3.333961e-49 | -8.615850e-47 |
| Msa0767500 | Msa1165270 | 0.800217 | 1.598434e-48 | -8.615850e-47 |
| Msa0767500 | Msa1206650 | 0.807991 | 3.856683e-50 | -8.615850e-47 |
| Msa0767500 | Msa1298100 | 0.806823 | 6.821972e-50 | -8.615850e-47 |
| Msa0767500 | Msa1450720 | 0.820636 | 6.176363e-53 | -8.615850e-47 |
| Msa0191070 | Msa0767500 | 0.823216 | 1.560604e-53 | -8.615850e-47 |
| Msa0233370 | Msa0767500 | 0.804631 | 1.968834e-49 | -8.615850e-47 |
| Msa0382310 | Msa0767500 | 0.832134 | 1.124131e-55 | -8.615850e-47 |
| Msa0395980 | Msa0767500 | 0.800919 | 1.149945e-48 | -8.615850e-47 |
| Msa0431210 | Msa0767500 | 0.824134 | 9.515469e-54 | -8.615850e-47 |
| Msa0440510 | Msa0767500 | 0.804352 | 2.251413e-49 | -8.615850e-47 |
| Msa0257490 | Msa0767500 | 0.806834 | 6.784307e-50 | -8.615850e-47 |
| Msa0311720 | Msa0767500 | 0.814898 | 1.218755e-51 | -8.615850e-47 |
| Msa0491000 | Msa0767500 | 0.807087 | 5.998348e-50 | -8.615850e-47 |
| Msa0520270 | Msa0767500 | 0.832619 | 8.523134e-56 | -8.615850e-47 |
| Msa0527740 | Msa0767500 | 0.801987 | 6.947488e-49 | -8.615850e-47 |
| Msa0560500 | Msa0767500 | 0.809110 | 2.225225e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767500 | MtrunA17_Chr5g0419851 | 98.338 | 361 | 6 | 0 | 1 | 361 | 61 | 421 | 0.0 | 737 |
| Msa0767500 | MtrunA17_Chr8g0372821 | 39.840 | 374 | 205 | 3 | 1 | 360 | 1 | 368 | 5.01e-101 | 303 |
| Msa0767500 | MtrunA17_Chr4g0008111 | 39.669 | 363 | 210 | 3 | 1 | 360 | 1 | 357 | 7.95e-98 | 294 |
| Msa0767500 | MtrunA17_Chr8g0343971 | 42.192 | 365 | 199 | 6 | 1 | 360 | 1 | 358 | 8.56e-98 | 294 |
| Msa0767500 | MtrunA17_Chr5g0404631 | 40.800 | 375 | 201 | 4 | 1 | 360 | 11 | 379 | 2.64e-97 | 294 |
| Msa0767500 | MtrunA17_Chr8g0343981 | 40.997 | 361 | 206 | 2 | 1 | 360 | 1 | 355 | 1.59e-96 | 291 |
| Msa0767500 | MtrunA17_Chr8g0372671 | 41.530 | 366 | 202 | 3 | 1 | 360 | 1 | 360 | 2.94e-96 | 290 |
| Msa0767500 | MtrunA17_Chr3g0144871 | 42.486 | 346 | 180 | 3 | 1 | 333 | 1 | 340 | 5.71e-96 | 290 |
| Msa0767500 | MtrunA17_Chr6g0475241 | 38.504 | 361 | 215 | 2 | 1 | 360 | 1 | 355 | 1.66e-93 | 283 |
| Msa0767500 | MtrunA17_Chr3g0107591 | 38.122 | 362 | 201 | 4 | 1 | 347 | 1 | 354 | 5.71e-90 | 275 |
| Msa0767500 | MtrunA17_Chr6g0475221 | 38.147 | 367 | 205 | 6 | 1 | 360 | 1 | 352 | 1.11e-85 | 263 |
| Msa0767500 | MtrunA17_Chr7g0252361 | 38.108 | 370 | 210 | 5 | 3 | 360 | 1 | 363 | 5.75e-77 | 241 |
| Msa0767500 | MtrunA17_Chr3g0107871 | 39.130 | 345 | 197 | 5 | 24 | 360 | 1 | 340 | 5.83e-75 | 235 |
| Msa0767500 | MtrunA17_Chr3g0100101 | 33.043 | 345 | 217 | 5 | 1 | 333 | 10 | 352 | 5.83e-61 | 200 |
| Msa0767500 | MtrunA17_Chr5g0444921 | 32.203 | 354 | 214 | 7 | 1 | 333 | 13 | 361 | 6.35e-60 | 198 |
| Msa0767500 | MtrunA17_Chr1g0208641 | 35.404 | 322 | 178 | 9 | 50 | 361 | 66 | 367 | 2.20e-50 | 172 |
| Msa0767500 | MtrunA17_Chr1g0155451 | 40.097 | 207 | 117 | 2 | 161 | 360 | 9 | 215 | 6.54e-46 | 156 |
| Msa0767500 | MtrunA17_Chr8g0372801 | 46.324 | 136 | 67 | 1 | 90 | 225 | 31 | 160 | 1.52e-37 | 133 |
| Msa0767500 | MtrunA17_Chr1g0155461 | 45.732 | 164 | 75 | 5 | 1 | 152 | 1 | 162 | 1.79e-32 | 120 |
| Msa0767500 | MtrunA17_Chr1g0155491 | 45.143 | 175 | 86 | 3 | 1 | 165 | 1 | 175 | 3.35e-32 | 119 |
| Msa0767500 | MtrunA17_Chr3g0099281 | 36.628 | 172 | 95 | 3 | 1 | 161 | 13 | 181 | 4.25e-32 | 119 |
| Msa0767500 | MtrunA17_Chr6g0455071 | 59.091 | 88 | 36 | 0 | 137 | 224 | 11 | 98 | 5.47e-32 | 117 |
| Msa0767500 | MtrunA17_Chr7g0252341 | 49.565 | 115 | 54 | 2 | 48 | 161 | 21 | 132 | 1.69e-28 | 108 |
| Msa0767500 | MtrunA17_Chr7g0252501 | 33.838 | 198 | 115 | 3 | 173 | 360 | 37 | 228 | 1.26e-25 | 103 |
| Msa0767500 | MtrunA17_Chr1g0155481 | 43.617 | 94 | 53 | 0 | 156 | 249 | 4 | 97 | 4.53e-20 | 85.9 |
| Msa0767500 | MtrunA17_Chr3g0099271 | 28.177 | 181 | 120 | 4 | 161 | 333 | 2 | 180 | 3.51e-18 | 82.0 |
| Msa0767500 | MtrunA17_Chr1g0155471 | 35.294 | 119 | 71 | 2 | 248 | 360 | 5 | 123 | 4.43e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767500 | AT4G36470.1 | 63.562 | 365 | 127 | 3 | 2 | 360 | 5 | 369 | 3.34e-173 | 486 |
| Msa0767500 | AT3G11480.1 | 39.889 | 361 | 203 | 6 | 5 | 360 | 27 | 378 | 3.26e-83 | 258 |
| Msa0767500 | AT1G19640.1 | 42.005 | 369 | 187 | 5 | 1 | 342 | 1 | 369 | 4.20e-83 | 258 |
| Msa0767500 | AT5G04370.1 | 38.781 | 361 | 200 | 6 | 9 | 360 | 41 | 389 | 1.44e-79 | 249 |
| Msa0767500 | AT5G04370.2 | 38.781 | 361 | 200 | 6 | 9 | 360 | 60 | 408 | 1.66e-79 | 249 |
| Msa0767500 | AT5G04370.3 | 38.781 | 361 | 200 | 6 | 9 | 360 | 46 | 394 | 2.00e-79 | 249 |
| Msa0767500 | AT5G66430.1 | 38.187 | 364 | 198 | 7 | 9 | 358 | 1 | 351 | 2.05e-78 | 244 |
| Msa0767500 | AT5G38020.1 | 39.429 | 350 | 185 | 5 | 6 | 337 | 3 | 343 | 6.81e-78 | 244 |
| Msa0767500 | AT5G04380.3 | 37.778 | 360 | 203 | 7 | 9 | 358 | 38 | 386 | 1.44e-71 | 228 |
| Msa0767500 | AT2G14060.1 | 37.243 | 341 | 193 | 5 | 9 | 337 | 14 | 345 | 5.15e-70 | 224 |
| Msa0767500 | AT5G04380.1 | 37.222 | 360 | 198 | 8 | 9 | 358 | 34 | 375 | 1.48e-67 | 218 |
| Msa0767500 | AT3G21950.1 | 35.244 | 349 | 199 | 5 | 6 | 336 | 3 | 342 | 5.10e-67 | 216 |
| Msa0767500 | AT5G04380.2 | 38.871 | 319 | 175 | 6 | 49 | 358 | 8 | 315 | 6.73e-67 | 214 |
| Msa0767500 | AT5G38020.2 | 39.216 | 306 | 160 | 4 | 49 | 337 | 8 | 304 | 3.87e-66 | 212 |
| Msa0767500 | AT5G55250.1 | 34.097 | 349 | 209 | 7 | 1 | 333 | 13 | 356 | 2.87e-62 | 204 |
| Msa0767500 | AT1G68040.1 | 34.604 | 341 | 200 | 8 | 3 | 334 | 7 | 333 | 3.59e-62 | 203 |
| Msa0767500 | AT3G21950.2 | 32.808 | 381 | 197 | 6 | 6 | 336 | 3 | 374 | 1.12e-60 | 200 |
| Msa0767500 | AT5G55250.2 | 33.861 | 316 | 188 | 7 | 34 | 333 | 8 | 318 | 4.36e-54 | 182 |
| Msa0767500 | AT1G15125.1 | 32.840 | 338 | 203 | 7 | 9 | 338 | 1 | 322 | 4.56e-54 | 182 |
| Msa0767500 | AT5G56300.1 | 31.429 | 350 | 217 | 6 | 3 | 336 | 18 | 360 | 3.03e-52 | 178 |
| Msa0767500 | AT2G14060.2 | 43.119 | 218 | 114 | 3 | 9 | 225 | 14 | 222 | 7.13e-52 | 173 |
| Msa0767500 | AT5G38780.1 | 30.747 | 348 | 214 | 7 | 7 | 342 | 8 | 340 | 7.26e-52 | 176 |
| Msa0767500 | AT5G38100.1 | 31.283 | 374 | 216 | 12 | 6 | 360 | 7 | 358 | 1.72e-51 | 175 |
| Msa0767500 | AT5G37970.1 | 32.764 | 351 | 204 | 10 | 7 | 342 | 8 | 341 | 4.55e-51 | 174 |
| Msa0767500 | AT5G37990.1 | 32.370 | 346 | 202 | 9 | 7 | 337 | 8 | 336 | 1.41e-50 | 173 |
| Msa0767500 | AT4G26420.1 | 31.768 | 362 | 219 | 8 | 3 | 344 | 7 | 360 | 1.10e-48 | 168 |
| Msa0767500 | AT5G38100.3 | 31.519 | 349 | 200 | 12 | 28 | 360 | 10 | 335 | 2.41e-48 | 166 |
| Msa0767500 | AT5G38780.2 | 30.976 | 297 | 182 | 6 | 54 | 342 | 10 | 291 | 1.78e-45 | 158 |
| Msa0767500 | AT3G44840.1 | 31.233 | 365 | 220 | 11 | 7 | 361 | 5 | 348 | 1.14e-44 | 157 |
| Msa0767500 | AT5G38100.4 | 37.975 | 237 | 117 | 9 | 6 | 230 | 7 | 225 | 1.20e-40 | 144 |
| Msa0767500 | AT5G38100.2 | 37.975 | 237 | 117 | 9 | 6 | 230 | 7 | 225 | 1.37e-40 | 144 |
| Msa0767500 | AT3G44870.1 | 32.867 | 286 | 174 | 5 | 7 | 290 | 5 | 274 | 1.71e-40 | 147 |
| Msa0767500 | AT1G15125.2 | 37.443 | 219 | 120 | 4 | 9 | 223 | 1 | 206 | 1.95e-39 | 140 |
| Msa0767500 | AT3G44860.1 | 30.518 | 367 | 218 | 10 | 7 | 360 | 5 | 347 | 8.14e-39 | 141 |
| Msa0767500 | AT1G66700.1 | 28.453 | 362 | 231 | 9 | 9 | 360 | 9 | 352 | 6.06e-38 | 139 |
| Msa0767500 | AT4G26420.3 | 36.283 | 226 | 132 | 5 | 3 | 224 | 7 | 224 | 2.97e-37 | 135 |
| Msa0767500 | AT4G26420.2 | 36.364 | 220 | 128 | 5 | 9 | 224 | 1 | 212 | 8.45e-36 | 131 |
| Msa0767500 | AT1G66720.1 | 27.174 | 368 | 227 | 12 | 9 | 360 | 9 | 351 | 1.33e-33 | 127 |
| Msa0767500 | AT1G66690.1 | 27.778 | 360 | 236 | 8 | 9 | 360 | 9 | 352 | 2.70e-32 | 124 |
| Msa0767500 | AT1G66700.3 | 31.019 | 216 | 130 | 4 | 9 | 219 | 9 | 210 | 8.89e-28 | 110 |
Find 77 sgRNAs with CRISPR-Local
Find 427 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTCAATTCTATCTTTA+AGG | 0.090377 | 5_2:+30766091 | Msa0767500:CDS |
| AATTTCAATGTGGTATATTT+TGG | 0.167945 | 5_2:+30772113 | Msa0767500:three_prime_UTR |
| CCACTTTGGAGAAAAGATTT+TGG | 0.182691 | 5_2:+30771982 | Msa0767500:CDS |
| TCTTCTATTTCTTCTCTTGA+TGG | 0.183566 | 5_2:-30771821 | None:intergenic |
| ACAAAGTGCAAGTAACTATT+AGG | 0.200532 | 5_2:-30766215 | None:intergenic |
| TTGATGATTGATAGAGTATT+TGG | 0.223902 | 5_2:-30765978 | None:intergenic |
| TATCTTGATTAAGCAGCTTT+TGG | 0.237397 | 5_2:-30766127 | None:intergenic |
| AGCATACTCTAAGCAGTTTC+AGG | 0.243708 | 5_2:+30766935 | Msa0767500:CDS |
| AAAATGGTGCTTACATTTCT+AGG | 0.257688 | 5_2:+30767011 | Msa0767500:CDS |
| TGTAGTATAGCTAGGACTTC+AGG | 0.276338 | 5_2:+30772234 | Msa0767500:three_prime_UTR |
| GAGTATAGGCATTGCTGATT+TGG | 0.281462 | 5_2:+30765941 | Msa0767500:CDS |
| ACAGAGGCAACTCTTTCTTC+TGG | 0.290156 | 5_2:+30767057 | Msa0767500:CDS |
| GAAAGCAGGGTCATTGAAAT+TGG | 0.298092 | 5_2:+30771853 | Msa0767500:CDS |
| TTCTGTTCATCATAGATTGC+AGG | 0.310451 | 5_2:-30766852 | None:intergenic |
| CAGAGGCAACTCTTTCTTCT+GGG | 0.360572 | 5_2:+30767058 | Msa0767500:CDS |
| AGTATAGGCATTGCTGATTT+GGG | 0.367599 | 5_2:+30765942 | Msa0767500:CDS |
| TTGAAAGCCAGTGTAAACTA+TGG | 0.371002 | 5_2:-30766247 | None:intergenic |
| GCTGATTTGGGATGTTCATC+TGG | 0.374942 | 5_2:+30765954 | Msa0767500:CDS |
| TCAGCAATGCCTATACTCTT+TGG | 0.382092 | 5_2:-30765936 | None:intergenic |
| GGTTAGAAATCATTGATTCT+TGG | 0.390675 | 5_2:-30771961 | None:intergenic |
| TTGCCTCTGTCAACATGTTC+AGG | 0.395884 | 5_2:-30767044 | None:intergenic |
| ATAGAATTGAAGTCATTAGT+TGG | 0.400155 | 5_2:-30766083 | None:intergenic |
| TATGCTTGAGAAACCACTTC+AGG | 0.400799 | 5_2:-30766918 | None:intergenic |
| ATAGTTTACACTGGCTTTCA+AGG | 0.405651 | 5_2:+30766249 | Msa0767500:CDS |
| TTTCCTTGTTCCTTCGATCA+AGG | 0.407489 | 5_2:+30766964 | Msa0767500:CDS |
| ACACATATTGGACTAATTAG+AGG | 0.409005 | 5_2:-30772175 | None:intergenic |
| AAGCGCAGTTACACACATAT+TGG | 0.409683 | 5_2:-30772187 | None:intergenic |
| GTCATTGAAATTGGAGAGGT+TGG | 0.423951 | 5_2:+30771862 | Msa0767500:CDS |
| TAGATAAGAAGGAGCAAGGC+AGG | 0.435823 | 5_2:+30771897 | Msa0767500:CDS |
| GAGAAAGTGTTTCATATGAC+TGG | 0.444815 | 5_2:+30765601 | Msa0767500:CDS |
| CTTATGACTTGTTAATTGAA+TGG | 0.447928 | 5_2:-30766015 | None:intergenic |
| AAAAGCTGCTTAATCAAGAT+AGG | 0.451733 | 5_2:+30766129 | Msa0767500:CDS |
| TCAATGATTTCTAACCACTT+TGG | 0.458721 | 5_2:+30771968 | Msa0767500:CDS |
| CAAAGTGCAAGTAACTATTA+GGG | 0.459256 | 5_2:-30766214 | None:intergenic |
| TCTGAAGAATTAGTTGTTGG+TGG | 0.473474 | 5_2:+30766987 | Msa0767500:CDS |
| GTTTGAGAACTATGCAATGC+TGG | 0.485835 | 5_2:+30772012 | Msa0767500:CDS |
| GAAGATGAAGTAATGAAAGC+AGG | 0.486603 | 5_2:+30771839 | Msa0767500:CDS |
| CTTTACTATTCTAGTCTCCC+AGG | 0.486771 | 5_2:+30767097 | Msa0767500:CDS |
| GTAGTATAGCTAGGACTTCA+GGG | 0.492448 | 5_2:+30772235 | Msa0767500:three_prime_UTR |
| GAAACAACACCAAAGAGTAT+AGG | 0.498471 | 5_2:+30765927 | Msa0767500:CDS |
| AATGTTTGACATAGATAAGA+AGG | 0.500046 | 5_2:+30771886 | Msa0767500:CDS |
| CTTGTAGTTGTAGTATAGCT+AGG | 0.503709 | 5_2:+30772226 | Msa0767500:three_prime_UTR |
| ATGCTTGAGAAACCACTTCA+GGG | 0.508721 | 5_2:-30766917 | None:intergenic |
| TTTCATATGACTGGAGGAGT+TGG | 0.517310 | 5_2:+30765610 | Msa0767500:CDS |
| AGAAATCATTGATTCTTGGA+TGG | 0.518959 | 5_2:-30771957 | None:intergenic |
| AGGTCTGAAGAATTAGTTGT+TGG | 0.520501 | 5_2:+30766984 | Msa0767500:CDS |
| CAATCTATGATGAACAGAAA+AGG | 0.521627 | 5_2:+30766856 | Msa0767500:CDS |
| ACAGAAAAGGTCTTTGAACA+AGG | 0.529384 | 5_2:+30766869 | Msa0767500:CDS |
| ATTCCTCCCATAGTTTACAC+TGG | 0.536094 | 5_2:+30766240 | Msa0767500:CDS |
| CACATATTGGACTAATTAGA+GGG | 0.536192 | 5_2:-30772174 | None:intergenic |
| TGATGAAGAAATTGCAAAGG+AGG | 0.543048 | 5_2:+30772036 | Msa0767500:CDS |
| CTGGGAGACTAGAATAGTAA+AGG | 0.551871 | 5_2:-30767096 | None:intergenic |
| GAGCAAGGCAGGGAGAGCTA+TGG | 0.556285 | 5_2:+30771908 | Msa0767500:CDS |
| CTTACATTTCTAGGAAGAAG+AGG | 0.558020 | 5_2:+30767020 | Msa0767500:CDS |
| TAGTTTACACTGGCTTTCAA+GGG | 0.566931 | 5_2:+30766250 | Msa0767500:CDS |
| ATGTGATAAAAGCCCTGAAG+TGG | 0.573917 | 5_2:+30766905 | Msa0767500:CDS |
| GACATAGATAAGAAGGAGCA+AGG | 0.574472 | 5_2:+30771893 | Msa0767500:CDS |
| TGAAAGCCAGTGTAAACTAT+GGG | 0.578907 | 5_2:-30766246 | None:intergenic |
| AGTCTTCCATAAAATGAACC+AGG | 0.581914 | 5_2:-30766188 | None:intergenic |
| AGAACAAGAACAAACGTGAT+GGG | 0.584403 | 5_2:-30772067 | None:intergenic |
| AGGAGAATGAACCTGTAATG+AGG | 0.588359 | 5_2:-30765656 | None:intergenic |
| AAGAACAAGAACAAACGTGA+TGG | 0.594278 | 5_2:-30772068 | None:intergenic |
| AAGATGAAGTAATGAAAGCA+GGG | 0.599911 | 5_2:+30771840 | Msa0767500:CDS |
| AGACCTTGATCGAAGGAACA+AGG | 0.605492 | 5_2:-30766967 | None:intergenic |
| TGTTCATCATAGATTGCAGG+AGG | 0.605716 | 5_2:-30766849 | None:intergenic |
| CAGAAAAGGTCTTTGAACAA+GGG | 0.606248 | 5_2:+30766870 | Msa0767500:CDS |
| AGACTCTAAATTCAGTAGAG+TGG | 0.607770 | 5_2:-30766046 | None:intergenic |
| CTATGGTACAGATGTTGCAA+AGG | 0.624437 | 5_2:+30771925 | Msa0767500:CDS |
| ATTCTTCAGACCTTGATCGA+AGG | 0.628016 | 5_2:-30766974 | None:intergenic |
| AGATAAGAAGGAGCAAGGCA+GGG | 0.631315 | 5_2:+30771898 | Msa0767500:CDS |
| CAGGGTCATTGAAATTGGAG+AGG | 0.633479 | 5_2:+30771858 | Msa0767500:CDS |
| AAAGTGTTTCATATGACTGG+AGG | 0.635621 | 5_2:+30765604 | Msa0767500:CDS |
| AAGCCAGTGTAAACTATGGG+AGG | 0.640625 | 5_2:-30766243 | None:intergenic |
| GTCTTCCATAAAATGAACCA+GGG | 0.674623 | 5_2:-30766187 | None:intergenic |
| GGACCTGAACATGTTGACAG+AGG | 0.711511 | 5_2:+30767041 | Msa0767500:CDS |
| GGTTGATGAAGAAATTGCAA+AGG | 0.715601 | 5_2:+30772033 | Msa0767500:CDS |
| ATATGTAACAAATTTCAATG+TGG | 0.728073 | 5_2:+30772103 | Msa0767500:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATAAATGTTATGAA+TGG | - | chr5_2:30765749-30765768 | None:intergenic | 10.0% |
| !! | AAGTAAATAAATATTATGAA+TGG | - | chr5_2:30765834-30765853 | None:intergenic | 10.0% |
| !!! | ATAAAACTTTTTTATATTGA+CGG | - | chr5_2:30767779-30767798 | None:intergenic | 10.0% |
| !!! | TTTTTTGGATTTTAAAAATT+TGG | - | chr5_2:30768045-30768064 | None:intergenic | 10.0% |
| !! | AATATATATGTAATGATTTA+AGG | + | chr5_2:30768084-30768103 | Msa0767500:intron | 10.0% |
| !!! | ACATTTATTTTATTTGTTTT+TGG | + | chr5_2:30768515-30768534 | Msa0767500:intron | 10.0% |
| !! | TTATATACTTAATTGTAAAT+TGG | - | chr5_2:30769632-30769651 | None:intergenic | 10.0% |
| !!! | TTTATTTAATTTTTGACAAT+GGG | - | chr5_2:30770955-30770974 | None:intergenic | 10.0% |
| !!! | ATTTATTTAATTTTTGACAA+TGG | - | chr5_2:30770956-30770975 | None:intergenic | 10.0% |
| !!! | TTAATAAAATTTTATGAGTA+TGG | + | chr5_2:30771527-30771546 | Msa0767500:intron | 10.0% |
| !!! | CAAAATTTTAAGGTAAAATA+AGG | - | chr5_2:30765715-30765734 | None:intergenic | 15.0% |
| !!! | CAAAATTTTAAGGTAAAATA+AGG | - | chr5_2:30765715-30765734 | None:intergenic | 15.0% |
| !! | ATTTATGAAAAACATATTTG+AGG | - | chr5_2:30766337-30766356 | None:intergenic | 15.0% |
| !!! | TTGTATTTTGTTAGTTAATT+TGG | + | chr5_2:30766365-30766384 | Msa0767500:intron | 15.0% |
| !!! | TTTGTAATTTTGATACATTT+AGG | + | chr5_2:30766429-30766448 | Msa0767500:intron | 15.0% |
| !!! | TTGTAATTTTGATACATTTA+GGG | + | chr5_2:30766430-30766449 | Msa0767500:intron | 15.0% |
| !!! | AAATGTTATCTTTACTATTT+TGG | + | chr5_2:30767136-30767155 | Msa0767500:intron | 15.0% |
| !!! | ATTTTACTTTATTGGTTTTT+TGG | - | chr5_2:30768060-30768079 | None:intergenic | 15.0% |
| !! | AAAAAACCAATAAAGTAAAA+TGG | + | chr5_2:30768059-30768078 | Msa0767500:intron | 15.0% |
| !!! | TATTTTCCATTTTACTTTAT+TGG | - | chr5_2:30768068-30768087 | None:intergenic | 15.0% |
| !! | AACAAATAAAATAAATGTGA+TGG | - | chr5_2:30768513-30768532 | None:intergenic | 15.0% |
| !!! | ATTTTATCATCATTCTAAAA+CGG | - | chr5_2:30768641-30768660 | None:intergenic | 15.0% |
| !! | GATGATAAAATTAAAATTCA+TGG | + | chr5_2:30768650-30768669 | Msa0767500:intron | 15.0% |
| !!! | GTTAATTATTTGTAAGTTTT+AGG | + | chr5_2:30770893-30770912 | Msa0767500:intron | 15.0% |
| !!! | ATATATTTAAAGGTATTCTA+AGG | + | chr5_2:30771258-30771277 | Msa0767500:intron | 15.0% |
| !! | AGATATTGAAGAATAATTGA+AGG | - | chr5_2:30765679-30765698 | None:intergenic | 20.0% |
| !! | TTAATCAAGATAGGAAAAAT+GGG | + | chr5_2:30766138-30766157 | Msa0767500:CDS | 20.0% |
| !! | AAAAAGAAGTAATGAAAAGA+AGG | - | chr5_2:30766287-30766306 | None:intergenic | 20.0% |
| !! | TTACCTATAAAAGATATACT+TGG | + | chr5_2:30766399-30766418 | Msa0767500:intron | 20.0% |
| !!! | ACATTTTGTTATTTTTAACG+TGG | - | chr5_2:30766704-30766723 | None:intergenic | 20.0% |
| !! | AAAGATAACATTTGTGTTAA+AGG | - | chr5_2:30767129-30767148 | None:intergenic | 20.0% |
| !! | AAAACAAATGCATTCTATAT+AGG | + | chr5_2:30767216-30767235 | Msa0767500:intron | 20.0% |
| !! | TGCATAAAAATTTAACTCAT+TGG | - | chr5_2:30767756-30767775 | None:intergenic | 20.0% |
| !!! | AAACATTTTTAATAGTCTGA+CGG | + | chr5_2:30767857-30767876 | Msa0767500:intron | 20.0% |
| !! | ATTAATTGATGTACACAATT+GGG | - | chr5_2:30767915-30767934 | None:intergenic | 20.0% |
| !! | AATTAATTGATGTACACAAT+TGG | - | chr5_2:30767916-30767935 | None:intergenic | 20.0% |
| !!! | CTTTAACTTATAAATGAACT+TGG | - | chr5_2:30767951-30767970 | None:intergenic | 20.0% |
| !!! | TCTTTTGTGTTTATCATAAA+GGG | + | chr5_2:30768382-30768401 | Msa0767500:intron | 20.0% |
| !! | TTCAAAAGTGATTTCTAAAT+TGG | - | chr5_2:30768780-30768799 | None:intergenic | 20.0% |
| !!! | GTGATTTTTTTTAACCTTTT+CGG | + | chr5_2:30768831-30768850 | Msa0767500:intron | 20.0% |
| !! | TGTTAAACATATCAAATAGT+TGG | + | chr5_2:30769234-30769253 | Msa0767500:intron | 20.0% |
| !!! | AAAAGGTATCATTATCTATA+GGG | - | chr5_2:30769320-30769339 | None:intergenic | 20.0% |
| !!! | AAACTTGACATTAAAGTTTT+CGG | - | chr5_2:30769473-30769492 | None:intergenic | 20.0% |
| !! | TCATTAAACTATAAGAAGTT+TGG | + | chr5_2:30769665-30769684 | Msa0767500:intron | 20.0% |
| !! | TAGCTTAAAAACTAAATTGA+TGG | + | chr5_2:30769830-30769849 | Msa0767500:intron | 20.0% |
| !! | ATAAAAAGGCAAGTTAAAAA+GGG | + | chr5_2:30770139-30770158 | Msa0767500:intron | 20.0% |
| !! | GATACCATATTAAATGAATT+TGG | + | chr5_2:30770392-30770411 | Msa0767500:intron | 20.0% |
| !! | AGTACCAAATTCATTTAATA+TGG | - | chr5_2:30770399-30770418 | None:intergenic | 20.0% |
| !! | AGAAAACATTTGAAAAGTAA+TGG | + | chr5_2:30770856-30770875 | Msa0767500:intron | 20.0% |
| !! | TAAATCCCCAAATAAAATAT+TGG | - | chr5_2:30770987-30771006 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTTATCGACTAT+TGG | + | chr5_2:30771102-30771121 | Msa0767500:intron | 20.0% |
| !! | TTTAAATATATACAAGAGTG+AGG | - | chr5_2:30771249-30771268 | None:intergenic | 20.0% |
| !! | TCACTCTTGTATATATTTAA+AGG | + | chr5_2:30771248-30771267 | Msa0767500:intron | 20.0% |
| !!! | ATAAAATTTTATGAGTATGG+TGG | + | chr5_2:30771530-30771549 | Msa0767500:intron | 20.0% |
| !! | ATATGTAACAAATTTCAATG+TGG | + | chr5_2:30772103-30772122 | Msa0767500:three_prime_UTR | 20.0% |
| !!! | AATTTCAATGTGGTATATTT+TGG | + | chr5_2:30772113-30772132 | Msa0767500:three_prime_UTR | 20.0% |
| ! | AACTAAGAAAACCCAAAAAA+TGG | + | chr5_2:30765573-30765592 | Msa0767500:exon | 25.0% |
| !!! | TTTCTCTACATCCATTTTTT+GGG | - | chr5_2:30765587-30765606 | None:intergenic | 25.0% |
| ! | GTAAAATAAGGAAAAGAGTA+TGG | - | chr5_2:30765703-30765722 | None:intergenic | 25.0% |
| ! | GTAAAATAAGGAAAAGAGTA+TGG | - | chr5_2:30765703-30765722 | None:intergenic | 25.0% |
| !! | TTGATGATTGATAGAGTATT+TGG | - | chr5_2:30765981-30766000 | None:intergenic | 25.0% |
| !!! | CTTATGACTTGTTAATTGAA+TGG | - | chr5_2:30766018-30766037 | None:intergenic | 25.0% |
| ! | ATAGAATTGAAGTCATTAGT+TGG | - | chr5_2:30766086-30766105 | None:intergenic | 25.0% |
| ! | TGACTTCAATTCTATCTTTA+AGG | + | chr5_2:30766091-30766110 | Msa0767500:CDS | 25.0% |
| ! | CTTAATCAAGATAGGAAAAA+TGG | + | chr5_2:30766137-30766156 | Msa0767500:CDS | 25.0% |
| !! | TCTCCAAGTATATCTTTTAT+AGG | - | chr5_2:30766405-30766424 | None:intergenic | 25.0% |
| !! | ACATTTTAAATATGGAGAAG+TGG | - | chr5_2:30766583-30766602 | None:intergenic | 25.0% |
| ! | ATCATAGCTATATGTAATTG+TGG | + | chr5_2:30766803-30766822 | Msa0767500:intron | 25.0% |
| !!! | ATTTTGGAACTCAATAATCA+AGG | + | chr5_2:30767152-30767171 | Msa0767500:intron | 25.0% |
| ! | TAAATTACACACACAATTGA+TGG | - | chr5_2:30767327-30767346 | None:intergenic | 25.0% |
| ! | TTAATTGATGTACACAATTG+GGG | - | chr5_2:30767914-30767933 | None:intergenic | 25.0% |
| ! | ACTTATAAATGAACTTGGTA+TGG | - | chr5_2:30767946-30767965 | None:intergenic | 25.0% |
| ! | ACACAAATGATGTATAATCA+TGG | - | chr5_2:30767996-30768015 | None:intergenic | 25.0% |
| !! | TGAGTAAAAATCAACTTTTG+TGG | + | chr5_2:30768110-30768129 | Msa0767500:intron | 25.0% |
| !! | CTCTTTTGTGTTTATCATAA+AGG | + | chr5_2:30768381-30768400 | Msa0767500:intron | 25.0% |
| !! | CTTTTGTGTTTATCATAAAG+GGG | + | chr5_2:30768383-30768402 | Msa0767500:intron | 25.0% |
| ! | ATACAACAATTTGTCACTAT+GGG | - | chr5_2:30769148-30769167 | None:intergenic | 25.0% |
| ! | AATACAACAATTTGTCACTA+TGG | - | chr5_2:30769149-30769168 | None:intergenic | 25.0% |
| ! | CAAATAGTTGGATAGTTATA+AGG | + | chr5_2:30769246-30769265 | Msa0767500:intron | 25.0% |
| !!! | CAAAAGGTATCATTATCTAT+AGG | - | chr5_2:30769321-30769340 | None:intergenic | 25.0% |
| ! | TAATTGTAAATTGGAGAGAA+AGG | - | chr5_2:30769623-30769642 | None:intergenic | 25.0% |
| ! | CGTAGTTTAAAGATAAATTG+AGG | + | chr5_2:30769798-30769817 | Msa0767500:intron | 25.0% |
| !! | TTGATGGTTTATTCAATAGT+AGG | + | chr5_2:30769846-30769865 | Msa0767500:intron | 25.0% |
| ! | TCAATAGTAGGATTGTTAAA+TGG | + | chr5_2:30769858-30769877 | Msa0767500:intron | 25.0% |
| ! | CAATAGTAGGATTGTTAAAT+GGG | + | chr5_2:30769859-30769878 | Msa0767500:intron | 25.0% |
| !!! | CTTTTTAACTTGCCTTTTTA+TGG | - | chr5_2:30770140-30770159 | None:intergenic | 25.0% |
| ! | CATAAAAAGGCAAGTTAAAA+AGG | + | chr5_2:30770138-30770157 | Msa0767500:intron | 25.0% |
| ! | AAAGGGAAAATTATGAATTG+CGG | + | chr5_2:30770156-30770175 | Msa0767500:intron | 25.0% |
| !!! | ATTCTTCAACCATTTTTTGT+GGG | - | chr5_2:30770260-30770279 | None:intergenic | 25.0% |
| ! | AGAGTTAAAAATGACAATGT+GGG | - | chr5_2:30770367-30770386 | None:intergenic | 25.0% |
| !! | AAGGTGTTATAACATTGAAT+AGG | - | chr5_2:30770587-30770606 | None:intergenic | 25.0% |
| ! | ATTAGATCTAAATGGAGAAA+GGG | + | chr5_2:30770830-30770849 | Msa0767500:intron | 25.0% |
| ! | ATTTGAAAAGTAATGGCATA+AGG | + | chr5_2:30770863-30770882 | Msa0767500:intron | 25.0% |
| ! | TTTGAAAAGTAATGGCATAA+GGG | + | chr5_2:30770864-30770883 | Msa0767500:intron | 25.0% |
| !! | AACCACACCAATATTTTATT+TGG | + | chr5_2:30770977-30770996 | Msa0767500:intron | 25.0% |
| !!! | ACCACACCAATATTTTATTT+GGG | + | chr5_2:30770978-30770997 | Msa0767500:intron | 25.0% |
| ! | CATGTGCATATAATCAATTA+GGG | + | chr5_2:30771075-30771094 | Msa0767500:intron | 25.0% |
| ! | GAATTACTTGTATCTGTATT+TGG | + | chr5_2:30771152-30771171 | Msa0767500:intron | 25.0% |
| !! | TTCTGTATCAGTCTTTTTAA+AGG | + | chr5_2:30771184-30771203 | Msa0767500:intron | 25.0% |
| !! | TTTTGATCCTTATCTACATT+AGG | + | chr5_2:30771362-30771381 | Msa0767500:intron | 25.0% |
| !! | GTTTTTCTGTTTTCTTTTTG+CGG | + | chr5_2:30771461-30771480 | Msa0767500:intron | 25.0% |
| !! | TTTTTCTGTTTTCTTTTTGC+GGG | + | chr5_2:30771462-30771481 | Msa0767500:intron | 25.0% |
| ! | TAAAAAAATTCTACAAGCGA+GGG | - | chr5_2:30771501-30771520 | None:intergenic | 25.0% |
| ! | ATAAAAAAATTCTACAAGCG+AGG | - | chr5_2:30771502-30771521 | None:intergenic | 25.0% |
| ! | TAAACACAAATTCTCTCAAA+TGG | - | chr5_2:30771720-30771739 | None:intergenic | 25.0% |
| !!! | TTTGCTTTGATTTGTATTGA+AGG | + | chr5_2:30771748-30771767 | Msa0767500:intron | 25.0% |
| !!! | TTGCTTTGATTTGTATTGAA+GGG | + | chr5_2:30771749-30771768 | Msa0767500:intron | 25.0% |
| ! | AATGTTTGACATAGATAAGA+AGG | + | chr5_2:30771886-30771905 | Msa0767500:CDS | 25.0% |
| !!! | TATATTTTGGTTGGAAGTAA+TGG | + | chr5_2:30772126-30772145 | Msa0767500:three_prime_UTR | 25.0% |
| !!! | ATATTTTGGTTGGAAGTAAT+GGG | + | chr5_2:30772127-30772146 | Msa0767500:three_prime_UTR | 25.0% |
| !!! | CTTTCTCTACATCCATTTTT+TGG | - | chr5_2:30765588-30765607 | None:intergenic | 30.0% |
| ! | AACCTGTAATGAGGAATTTT+TGG | - | chr5_2:30765650-30765669 | None:intergenic | 30.0% |
| !! | ACAGAAAAAAGCATCAGATA+AGG | + | chr5_2:30765863-30765882 | Msa0767500:intron | 30.0% |
| ! | TATCTTGATTAAGCAGCTTT+TGG | - | chr5_2:30766130-30766149 | None:intergenic | 30.0% |
| AAAAGCTGCTTAATCAAGAT+AGG | + | chr5_2:30766129-30766148 | Msa0767500:CDS | 30.0% | |
| CAAAGTGCAAGTAACTATTA+GGG | - | chr5_2:30766217-30766236 | None:intergenic | 30.0% | |
| ACAAAGTGCAAGTAACTATT+AGG | - | chr5_2:30766218-30766237 | None:intergenic | 30.0% | |
| AGAAGTAATGAAAAGAAGGT+AGG | - | chr5_2:30766283-30766302 | None:intergenic | 30.0% | |
| ACAAATGCGTAATATATGCA+GGG | + | chr5_2:30766533-30766552 | Msa0767500:intron | 30.0% | |
| ! | CAGCTCACACATTTTAAATA+TGG | - | chr5_2:30766591-30766610 | None:intergenic | 30.0% |
| !! | GGTTATTTCTTGCTTATGTT+AGG | + | chr5_2:30766824-30766843 | Msa0767500:intron | 30.0% |
| CAATCTATGATGAACAGAAA+AGG | + | chr5_2:30766856-30766875 | Msa0767500:CDS | 30.0% | |
| ! | ATTAGTTGTTGGTGGAAAAA+TGG | + | chr5_2:30766995-30767014 | Msa0767500:CDS | 30.0% |
| AAAATGGTGCTTACATTTCT+AGG | + | chr5_2:30767011-30767030 | Msa0767500:CDS | 30.0% | |
| ! | AATTGATGGTCAAACATTGA+CGG | - | chr5_2:30767313-30767332 | None:intergenic | 30.0% |
| TATGTACACAATAGGTGTAA+AGG | - | chr5_2:30767418-30767437 | None:intergenic | 30.0% | |
| ACCTATTGTGTACATAAGTA+GGG | + | chr5_2:30767422-30767441 | Msa0767500:intron | 30.0% | |
| TTCACGAACATAAATAGTGA+TGG | + | chr5_2:30767576-30767595 | Msa0767500:intron | 30.0% | |
| ATAAATAGTGATGGTCATGA+GGG | + | chr5_2:30767585-30767604 | Msa0767500:intron | 30.0% | |
| TCACTTATAACTACATTGTG+TGG | - | chr5_2:30767626-30767645 | None:intergenic | 30.0% | |
| ACACAATGTAGTTATAAGTG+AGG | + | chr5_2:30767625-30767644 | Msa0767500:intron | 30.0% | |
| CACAATGTAGTTATAAGTGA+GGG | + | chr5_2:30767626-30767645 | Msa0767500:intron | 30.0% | |
| TTAACTCATTGGAAAATGCT+TGG | - | chr5_2:30767745-30767764 | None:intergenic | 30.0% | |
| !! | GATTGATAGTGAAGTATTGA+CGG | - | chr5_2:30767803-30767822 | None:intergenic | 30.0% |
| TGGATGACATGAAAAAACTA+AGG | - | chr5_2:30768025-30768044 | None:intergenic | 30.0% | |
| TGATGTTACACTAGTTATTG+TGG | + | chr5_2:30768183-30768202 | Msa0767500:intron | 30.0% | |
| AGAACTAACATGCAATTTCT+AGG | - | chr5_2:30768457-30768476 | None:intergenic | 30.0% | |
| TTGATCAACTCTTTCTTGAA+GGG | - | chr5_2:30768678-30768697 | None:intergenic | 30.0% | |
| TTTGATCAACTCTTTCTTGA+AGG | - | chr5_2:30768679-30768698 | None:intergenic | 30.0% | |
| GCAATCAATTTAAACCGAAA+AGG | - | chr5_2:30768848-30768867 | None:intergenic | 30.0% | |
| ! | TGCTAAACTATTTAGAGTCT+AGG | + | chr5_2:30768865-30768884 | Msa0767500:intron | 30.0% |
| TGCTATCAAAAAACGTTGTT+GGG | + | chr5_2:30768888-30768907 | Msa0767500:intron | 30.0% | |
| ATGATTTGAGAATTGTCCTA+CGG | + | chr5_2:30768936-30768955 | Msa0767500:intron | 30.0% | |
| TTTGTAAGTCAAGCTAAATG+TGG | + | chr5_2:30769183-30769202 | Msa0767500:intron | 30.0% | |
| ATACAAATTATCAGCTTACG+TGG | + | chr5_2:30769208-30769227 | Msa0767500:intron | 30.0% | |
| ATAGTTATAAGGTTAGAGCT+TGG | + | chr5_2:30769257-30769276 | Msa0767500:intron | 30.0% | |
| ATCATTATCTATAGGGTGAA+GGG | - | chr5_2:30769313-30769332 | None:intergenic | 30.0% | |
| TATCATTATCTATAGGGTGA+AGG | - | chr5_2:30769314-30769333 | None:intergenic | 30.0% | |
| !!! | AATGATACCTTTTGAGTTCA+AGG | + | chr5_2:30769327-30769346 | Msa0767500:intron | 30.0% |
| TGGAGAGAAAGGAATAATTT+AGG | - | chr5_2:30769612-30769631 | None:intergenic | 30.0% | |
| GTCTCTACTATTAAGATGTT+AGG | - | chr5_2:30769733-30769752 | None:intergenic | 30.0% | |
| !!! | TAATTTGAGCTAGCTTTTAG+AGG | - | chr5_2:30769896-30769915 | None:intergenic | 30.0% |
| TTAGAGTCTTACATTGTCAA+AGG | - | chr5_2:30769961-30769980 | None:intergenic | 30.0% | |
| ! | AACACGTTTTTATTACCTCA+AGG | - | chr5_2:30770014-30770033 | None:intergenic | 30.0% |
| AAGGGAAAATTATGAATTGC+GGG | + | chr5_2:30770157-30770176 | Msa0767500:intron | 30.0% | |
| TAAATCTTATGTGACATCCA+TGG | + | chr5_2:30770233-30770252 | Msa0767500:intron | 30.0% | |
| AAATCTTATGTGACATCCAT+GGG | + | chr5_2:30770234-30770253 | Msa0767500:intron | 30.0% | |
| !!! | GATTCTTCAACCATTTTTTG+TGG | - | chr5_2:30770261-30770280 | None:intergenic | 30.0% |
| CAGAGTTAAAAATGACAATG+TGG | - | chr5_2:30770368-30770387 | None:intergenic | 30.0% | |
| !!! | CATCCTTTGAGATTGTTTTT+GGG | - | chr5_2:30770426-30770445 | None:intergenic | 30.0% |
| !!! | TCATCCTTTGAGATTGTTTT+TGG | - | chr5_2:30770427-30770446 | None:intergenic | 30.0% |
| ! | ATTTGAAGCATGATTGAGAA+TGG | - | chr5_2:30770560-30770579 | None:intergenic | 30.0% |
| ATTCTCAATCATGCTTCAAA+TGG | + | chr5_2:30770559-30770578 | Msa0767500:intron | 30.0% | |
| TTCTCAATCATGCTTCAAAT+GGG | + | chr5_2:30770560-30770579 | Msa0767500:intron | 30.0% | |
| ! | AGCAAAGTCTAATAGTGTTT+TGG | + | chr5_2:30770731-30770750 | Msa0767500:intron | 30.0% |
| !!! | AGTGTTTTGGTGAATAATAG+AGG | + | chr5_2:30770744-30770763 | Msa0767500:intron | 30.0% |
| ATATTCTCTGTAGTTGCATA+CGG | + | chr5_2:30770772-30770791 | Msa0767500:intron | 30.0% | |
| CATTAGATCTAAATGGAGAA+AGG | + | chr5_2:30770829-30770848 | Msa0767500:intron | 30.0% | |
| ! | TTAATTTTTGACAATGGGTG+TGG | - | chr5_2:30770950-30770969 | None:intergenic | 30.0% |
| !! | CCACACCAATATTTTATTTG+GGG | + | chr5_2:30770979-30770998 | Msa0767500:intron | 30.0% |
| GCATGTGCATATAATCAATT+AGG | + | chr5_2:30771074-30771093 | Msa0767500:intron | 30.0% | |
| TACAAGTAATTCACTCTAGA+CGG | - | chr5_2:30771144-30771163 | None:intergenic | 30.0% | |
| ! | AGTGAGGTATTTAGAACTTA+GGG | - | chr5_2:30771233-30771252 | None:intergenic | 30.0% |
| ! | AATTCGTGTCAAGATTTGTT+AGG | - | chr5_2:30771316-30771335 | None:intergenic | 30.0% |
| TAACAAATCTTGACACGAAT+TGG | + | chr5_2:30771315-30771334 | Msa0767500:intron | 30.0% | |
| !! | TGATATTTTAGAGACTGGAT+TGG | + | chr5_2:30771404-30771423 | Msa0767500:intron | 30.0% |
| !! | GATATTTTAGAGACTGGATT+GGG | + | chr5_2:30771405-30771424 | Msa0767500:intron | 30.0% |
| AAATAAAACCTAGAGACCTA+AGG | - | chr5_2:30771440-30771459 | None:intergenic | 30.0% | |
| AAAAAAATTCTACAAGCGAG+GGG | - | chr5_2:30771500-30771519 | None:intergenic | 30.0% | |
| AAGCAATAGAAAACATCATG+AGG | - | chr5_2:30771607-30771626 | None:intergenic | 30.0% | |
| ! | TCTTCTATTTCTTCTCTTGA+TGG | - | chr5_2:30771824-30771843 | None:intergenic | 30.0% |
| AAGATGAAGTAATGAAAGCA+GGG | + | chr5_2:30771840-30771859 | Msa0767500:CDS | 30.0% | |
| !! | AGAAATCATTGATTCTTGGA+TGG | - | chr5_2:30771960-30771979 | None:intergenic | 30.0% |
| !! | GGTTAGAAATCATTGATTCT+TGG | - | chr5_2:30771964-30771983 | None:intergenic | 30.0% |
| TCAATGATTTCTAACCACTT+TGG | + | chr5_2:30771968-30771987 | Msa0767500:CDS | 30.0% | |
| !!! | TCAATGTGGTATATTTTGGT+TGG | + | chr5_2:30772117-30772136 | Msa0767500:three_prime_UTR | 30.0% |
| CACATATTGGACTAATTAGA+GGG | - | chr5_2:30772177-30772196 | None:intergenic | 30.0% | |
| ACACATATTGGACTAATTAG+AGG | - | chr5_2:30772178-30772197 | None:intergenic | 30.0% | |
| !! | GAGAAAGTGTTTCATATGAC+TGG | + | chr5_2:30765601-30765620 | Msa0767500:CDS | 35.0% |
| ! | AAAGTGTTTCATATGACTGG+AGG | + | chr5_2:30765604-30765623 | Msa0767500:CDS | 35.0% |
| TGCCAAAAATTCCTCATTAC+AGG | + | chr5_2:30765645-30765664 | Msa0767500:CDS | 35.0% | |
| ! | GAAACAACACCAAAGAGTAT+AGG | + | chr5_2:30765927-30765946 | Msa0767500:CDS | 35.0% |
| !! | AGTATAGGCATTGCTGATTT+GGG | + | chr5_2:30765942-30765961 | Msa0767500:CDS | 35.0% |
| AGACTCTAAATTCAGTAGAG+TGG | - | chr5_2:30766049-30766068 | None:intergenic | 35.0% | |
| !!! | TTAAGCAGCTTTTGGAATTC+AGG | - | chr5_2:30766122-30766141 | None:intergenic | 35.0% |
| !! | TGGGTTTCCTTCCATTTTTA+TGG | + | chr5_2:30766157-30766176 | Msa0767500:CDS | 35.0% |
| !! | GGGTTTCCTTCCATTTTTAT+GGG | + | chr5_2:30766158-30766177 | Msa0767500:CDS | 35.0% |
| !! | TTTCCTTCCATTTTTATGGG+AGG | + | chr5_2:30766161-30766180 | Msa0767500:CDS | 35.0% |
| TAACCTCCCATAAAAATGGA+AGG | - | chr5_2:30766167-30766186 | None:intergenic | 35.0% | |
| GTCTTCCATAAAATGAACCA+GGG | - | chr5_2:30766190-30766209 | None:intergenic | 35.0% | |
| AGTCTTCCATAAAATGAACC+AGG | - | chr5_2:30766191-30766210 | None:intergenic | 35.0% | |
| TGAAAGCCAGTGTAAACTAT+GGG | - | chr5_2:30766249-30766268 | None:intergenic | 35.0% | |
| TTGAAAGCCAGTGTAAACTA+TGG | - | chr5_2:30766250-30766269 | None:intergenic | 35.0% | |
| !! | ATAGTTTACACTGGCTTTCA+AGG | + | chr5_2:30766249-30766268 | Msa0767500:CDS | 35.0% |
| !! | TAGTTTACACTGGCTTTCAA+GGG | + | chr5_2:30766250-30766269 | Msa0767500:CDS | 35.0% |
| GACAAATGCGTAATATATGC+AGG | + | chr5_2:30766532-30766551 | Msa0767500:intron | 35.0% | |
| CAAATGCGTAATATATGCAG+GGG | + | chr5_2:30766534-30766553 | Msa0767500:intron | 35.0% | |
| !!! | TTTTTTCCCAAGTAGTCTAG+TGG | - | chr5_2:30766617-30766636 | None:intergenic | 35.0% |
| TTCTGTTCATCATAGATTGC+AGG | - | chr5_2:30766855-30766874 | None:intergenic | 35.0% | |
| ACAGAAAAGGTCTTTGAACA+AGG | + | chr5_2:30766869-30766888 | Msa0767500:CDS | 35.0% | |
| CAGAAAAGGTCTTTGAACAA+GGG | + | chr5_2:30766870-30766889 | Msa0767500:CDS | 35.0% | |
| AGGTCTGAAGAATTAGTTGT+TGG | + | chr5_2:30766984-30767003 | Msa0767500:CDS | 35.0% | |
| TCTGAAGAATTAGTTGTTGG+TGG | + | chr5_2:30766987-30767006 | Msa0767500:CDS | 35.0% | |
| ! | CTTACATTTCTAGGAAGAAG+AGG | + | chr5_2:30767020-30767039 | Msa0767500:CDS | 35.0% |
| TGTGTTAAAGGAATGTACCT+GGG | - | chr5_2:30767117-30767136 | None:intergenic | 35.0% | |
| TTGTGTTAAAGGAATGTACC+TGG | - | chr5_2:30767118-30767137 | None:intergenic | 35.0% | |
| TGACAGTCATACTTGATTGT+TGG | + | chr5_2:30767384-30767403 | Msa0767500:intron | 35.0% | |
| CACCTATTGTGTACATAAGT+AGG | + | chr5_2:30767421-30767440 | Msa0767500:intron | 35.0% | |
| ACCCTACTTATGTACACAAT+AGG | - | chr5_2:30767426-30767445 | None:intergenic | 35.0% | |
| TGCTATCAGATTTCCGTTAT+CGG | + | chr5_2:30767543-30767562 | Msa0767500:intron | 35.0% | |
| CATAAATAGTGATGGTCATG+AGG | + | chr5_2:30767584-30767603 | Msa0767500:intron | 35.0% | |
| TAAATAGTGATGGTCATGAG+GGG | + | chr5_2:30767586-30767605 | Msa0767500:intron | 35.0% | |
| CTAACACAACTCCAAAAAAC+CGG | - | chr5_2:30767670-30767689 | None:intergenic | 35.0% | |
| TGTTACACTAGTTATTGTGG+TGG | + | chr5_2:30768186-30768205 | Msa0767500:intron | 35.0% | |
| ! | CTAGTTATTGTGGTGGTTTT+TGG | + | chr5_2:30768193-30768212 | Msa0767500:intron | 35.0% |
| ! | TCTCAAGAAAACGATTTTGC+TGG | + | chr5_2:30768305-30768324 | Msa0767500:intron | 35.0% |
| ! | CTCAAGAAAACGATTTTGCT+GGG | + | chr5_2:30768306-30768325 | Msa0767500:intron | 35.0% |
| ! | ATAAAGGGGAAATTCTAGAG+TGG | + | chr5_2:30768397-30768416 | Msa0767500:intron | 35.0% |
| !! | ATCATTCTAAAACGGAAGAG+TGG | - | chr5_2:30768633-30768652 | None:intergenic | 35.0% |
| ! | CAAGAAAGAGTTGATCAAAG+CGG | + | chr5_2:30768680-30768699 | Msa0767500:intron | 35.0% |
| GTGCTATCAAAAAACGTTGT+TGG | + | chr5_2:30768887-30768906 | Msa0767500:intron | 35.0% | |
| TGATTTGAGAATTGTCCTAC+GGG | + | chr5_2:30768937-30768956 | Msa0767500:intron | 35.0% | |
| ! | ATCATGGATGTTGCTTGAAT+TGG | + | chr5_2:30769039-30769058 | Msa0767500:intron | 35.0% |
| ATCCAATCAGCTTATTTCAG+AGG | + | chr5_2:30769068-30769087 | Msa0767500:intron | 35.0% | |
| GATCAAACCTTGAACTCAAA+AGG | - | chr5_2:30769337-30769356 | None:intergenic | 35.0% | |
| TAGAGGAATAAAGGGATTGA+AGG | - | chr5_2:30769368-30769387 | None:intergenic | 35.0% | |
| ATCCCTTTATTCCTCTATGT+TGG | + | chr5_2:30769371-30769390 | Msa0767500:intron | 35.0% | |
| TCCCTTTATTCCTCTATGTT+GGG | + | chr5_2:30769372-30769391 | Msa0767500:intron | 35.0% | |
| ACCCAACATAGAGGAATAAA+GGG | - | chr5_2:30769376-30769395 | None:intergenic | 35.0% | |
| AACCCAACATAGAGGAATAA+AGG | - | chr5_2:30769377-30769396 | None:intergenic | 35.0% | |
| ! | TAATTGCTCTAAGTCGAATG+TGG | - | chr5_2:30769422-30769441 | None:intergenic | 35.0% |
| GAGCAATTATTCAAGTGAGT+TGG | + | chr5_2:30769433-30769452 | Msa0767500:intron | 35.0% | |
| TCTCACATTGCTTAGAAAAG+TGG | - | chr5_2:30769528-30769547 | None:intergenic | 35.0% | |
| AAAGCTAGCTCAAATTACGA+AGG | + | chr5_2:30769899-30769918 | Msa0767500:intron | 35.0% | |
| ! | TTTTTGCTTTCCCTTGTTCT+TGG | - | chr5_2:30770108-30770127 | None:intergenic | 35.0% |
| ACAAGGGAAAGCAAAAATTG+TGG | + | chr5_2:30770111-30770130 | Msa0767500:intron | 35.0% | |
| CAAGGGAAAGCAAAAATTGT+GGG | + | chr5_2:30770112-30770131 | Msa0767500:intron | 35.0% | |
| AAGGGAAAGCAAAAATTGTG+GGG | + | chr5_2:30770113-30770132 | Msa0767500:intron | 35.0% | |
| AAATTGTGGGGACCATAAAA+AGG | + | chr5_2:30770125-30770144 | Msa0767500:intron | 35.0% | |
| ACTCCCAAAAACAATCTCAA+AGG | + | chr5_2:30770420-30770439 | Msa0767500:intron | 35.0% | |
| CACCTTATCAAAACCAAGAA+TGG | + | chr5_2:30770601-30770620 | Msa0767500:intron | 35.0% | |
| !!! | GACCATTCTTGGTTTTGATA+AGG | - | chr5_2:30770606-30770625 | None:intergenic | 35.0% |
| CAAAACCAAGAATGGTCTAT+TGG | + | chr5_2:30770609-30770628 | Msa0767500:intron | 35.0% | |
| AAACACCAATAGACCATTCT+TGG | - | chr5_2:30770617-30770636 | None:intergenic | 35.0% | |
| TCAACCATAAGATAAAGCCT+AGG | - | chr5_2:30770674-30770693 | None:intergenic | 35.0% | |
| ! | TAGGCTTTATCTTATGGTTG+AGG | + | chr5_2:30770673-30770692 | Msa0767500:intron | 35.0% |
| GTAGTGAATTGTTGCAACTT+AGG | + | chr5_2:30770702-30770721 | Msa0767500:intron | 35.0% | |
| TGCAGTTCGTTAGATTTCAA+TGG | - | chr5_2:30770811-30770830 | None:intergenic | 35.0% | |
| CGAACTGCATTAGATCTAAA+TGG | + | chr5_2:30770822-30770841 | Msa0767500:intron | 35.0% | |
| CCCCAAATAAAATATTGGTG+TGG | - | chr5_2:30770982-30771001 | None:intergenic | 35.0% | |
| ACTCAACTAAAGTGAGTAGT+TGG | + | chr5_2:30771007-30771026 | Msa0767500:intron | 35.0% | |
| ! | GAGTGAGGTATTTAGAACTT+AGG | - | chr5_2:30771234-30771253 | None:intergenic | 35.0% |
| ! | TGTTTTCTTTTTGCGGGTTT+AGG | + | chr5_2:30771468-30771487 | Msa0767500:intron | 35.0% |
| GGAGATAAGATATCCTAACT+AGG | - | chr5_2:30771586-30771605 | None:intergenic | 35.0% | |
| GAAGATGAAGTAATGAAAGC+AGG | + | chr5_2:30771839-30771858 | Msa0767500:CDS | 35.0% | |
| ! | CCAAAATCTTTTCTCCAAAG+TGG | - | chr5_2:30771985-30772004 | None:intergenic | 35.0% |
| !! | CCACTTTGGAGAAAAGATTT+TGG | + | chr5_2:30771982-30772001 | Msa0767500:CDS | 35.0% |
| !! | GGTTGATGAAGAAATTGCAA+AGG | + | chr5_2:30772033-30772052 | Msa0767500:CDS | 35.0% |
| TGATGAAGAAATTGCAAAGG+AGG | + | chr5_2:30772036-30772055 | Msa0767500:CDS | 35.0% | |
| AGAACAAGAACAAACGTGAT+GGG | - | chr5_2:30772070-30772089 | None:intergenic | 35.0% | |
| AAGAACAAGAACAAACGTGA+TGG | - | chr5_2:30772071-30772090 | None:intergenic | 35.0% | |
| CTTGTAGTTGTAGTATAGCT+AGG | + | chr5_2:30772226-30772245 | Msa0767500:three_prime_UTR | 35.0% | |
| TTTCATATGACTGGAGGAGT+TGG | + | chr5_2:30765610-30765629 | Msa0767500:CDS | 40.0% | |
| AGGAGAATGAACCTGTAATG+AGG | - | chr5_2:30765659-30765678 | None:intergenic | 40.0% | |
| TCAGCAATGCCTATACTCTT+TGG | - | chr5_2:30765939-30765958 | None:intergenic | 40.0% | |
| ! | GAGTATAGGCATTGCTGATT+TGG | + | chr5_2:30765941-30765960 | Msa0767500:CDS | 40.0% |
| AGGGTAACCTCCCATAAAAA+TGG | - | chr5_2:30766171-30766190 | None:intergenic | 40.0% | |
| ! | ATTTTTATGGGAGGTTACCC+TGG | + | chr5_2:30766170-30766189 | Msa0767500:CDS | 40.0% |
| ! | GGTTACCCTGGTTCATTTTA+TGG | + | chr5_2:30766182-30766201 | Msa0767500:CDS | 40.0% |
| ATTCCTCCCATAGTTTACAC+TGG | + | chr5_2:30766240-30766259 | Msa0767500:CDS | 40.0% | |
| ATGAGTACTCTTAGTCTCTG+TGG | + | chr5_2:30766490-30766509 | Msa0767500:intron | 40.0% | |
| TGAGTACTCTTAGTCTCTGT+GGG | + | chr5_2:30766491-30766510 | Msa0767500:intron | 40.0% | |
| CTCTGTGGGTTTAACTCAAT+TGG | + | chr5_2:30766505-30766524 | Msa0767500:intron | 40.0% | |
| TGTTCATCATAGATTGCAGG+AGG | - | chr5_2:30766852-30766871 | None:intergenic | 40.0% | |
| ATGTGATAAAAGCCCTGAAG+TGG | + | chr5_2:30766905-30766924 | Msa0767500:CDS | 40.0% | |
| ATGCTTGAGAAACCACTTCA+GGG | - | chr5_2:30766920-30766939 | None:intergenic | 40.0% | |
| TATGCTTGAGAAACCACTTC+AGG | - | chr5_2:30766921-30766940 | None:intergenic | 40.0% | |
| AGCATACTCTAAGCAGTTTC+AGG | + | chr5_2:30766935-30766954 | Msa0767500:CDS | 40.0% | |
| TTTCCTTGTTCCTTCGATCA+AGG | + | chr5_2:30766964-30766983 | Msa0767500:CDS | 40.0% | |
| ATTCTTCAGACCTTGATCGA+AGG | - | chr5_2:30766977-30766996 | None:intergenic | 40.0% | |
| CTGGGAGACTAGAATAGTAA+AGG | - | chr5_2:30767099-30767118 | None:intergenic | 40.0% | |
| CTTTACTATTCTAGTCTCCC+AGG | + | chr5_2:30767097-30767116 | Msa0767500:CDS | 40.0% | |
| !! | ATCTCACAAGCCGATTTTGT+GGG | + | chr5_2:30767453-30767472 | Msa0767500:intron | 40.0% |
| CTAACACAACCCCACAAAAT+CGG | - | chr5_2:30767466-30767485 | None:intergenic | 40.0% | |
| AAGCACAAAGGATCTTGAAG+AGG | - | chr5_2:30767521-30767540 | None:intergenic | 40.0% | |
| !! | GATAACGGAAATCTGATAGC+AGG | - | chr5_2:30767544-30767563 | None:intergenic | 40.0% |
| GCTATCAGATTTCCGTTATC+GGG | + | chr5_2:30767544-30767563 | Msa0767500:intron | 40.0% | |
| CTATCAGATTTCCGTTATCG+GGG | + | chr5_2:30767545-30767564 | Msa0767500:intron | 40.0% | |
| AAATAGTGATGGTCATGAGG+GGG | + | chr5_2:30767587-30767606 | Msa0767500:intron | 40.0% | |
| AAAAACCGGATTGTGAGGTA+AGG | - | chr5_2:30767656-30767675 | None:intergenic | 40.0% | |
| !!! | TACCTCACAATCCGGTTTTT+TGG | + | chr5_2:30767656-30767675 | Msa0767500:intron | 40.0% |
| GCATTTGTTCTTAGACATCG+TGG | - | chr5_2:30767699-30767718 | None:intergenic | 40.0% | |
| GATGTACACAATTGGGGTAA+AGG | - | chr5_2:30767908-30767927 | None:intergenic | 40.0% | |
| ACATACAAGTCGTCCAAGTT+GGG | - | chr5_2:30768146-30768165 | None:intergenic | 40.0% | |
| ACGACTTGTATGTGCTATGT+GGG | + | chr5_2:30768153-30768172 | Msa0767500:intron | 40.0% | |
| !! | TTCTAGGATAGTGTGATCCA+TGG | - | chr5_2:30768441-30768460 | None:intergenic | 40.0% |
| CAATGACGTATAATGAGTCG+AGG | - | chr5_2:30768596-30768615 | None:intergenic | 40.0% | |
| TAAAACGGAAGAGTGGTAGA+GGG | - | chr5_2:30768626-30768645 | None:intergenic | 40.0% | |
| ATCAAAAAACGTTGTTGGGC+TGG | + | chr5_2:30768892-30768911 | Msa0767500:intron | 40.0% | |
| TCGTAGCTTCAGATAAGCAA+TGG | - | chr5_2:30769009-30769028 | None:intergenic | 40.0% | |
| ! | TCTGAAGCTACGATCCAATA+TGG | + | chr5_2:30769016-30769035 | Msa0767500:intron | 40.0% |
| CTACGATCCAATATGGATCA+TGG | + | chr5_2:30769023-30769042 | Msa0767500:intron | 40.0% | |
| GCAACATCCATGATCCATAT+TGG | - | chr5_2:30769033-30769052 | None:intergenic | 40.0% | |
| !! | AGCCTCTGAAATAAGCTGAT+TGG | - | chr5_2:30769073-30769092 | None:intergenic | 40.0% |
| TTCAGAGGCTAAACAATCCA+CGG | + | chr5_2:30769083-30769102 | Msa0767500:intron | 40.0% | |
| TTCCTCTATGTTGGGTTATG+AGG | + | chr5_2:30769380-30769399 | Msa0767500:intron | 40.0% | |
| TCCTCTATGTTGGGTTATGA+GGG | + | chr5_2:30769381-30769400 | Msa0767500:intron | 40.0% | |
| CACATTGCTTAGAAAAGTGG+AGG | - | chr5_2:30769525-30769544 | None:intergenic | 40.0% | |
| ATTACCTCAAGGAATGTGCA+GGG | - | chr5_2:30770003-30770022 | None:intergenic | 40.0% | |
| TATTACCTCAAGGAATGTGC+AGG | - | chr5_2:30770004-30770023 | None:intergenic | 40.0% | |
| TTAGACTCAGGACTTGTGAT+AGG | - | chr5_2:30770342-30770361 | None:intergenic | 40.0% | |
| ACAATGTGGGAATTAGACTC+AGG | - | chr5_2:30770354-30770373 | None:intergenic | 40.0% | |
| TCATGTGCTCGAAGTTGTAT+CGG | - | chr5_2:30770507-30770526 | None:intergenic | 40.0% | |
| GAGCACATGAATAGAAACAG+AGG | + | chr5_2:30770517-30770536 | Msa0767500:intron | 40.0% | |
| GAGAATGGTGTCTTTCCATT+CGG | - | chr5_2:30770545-30770564 | None:intergenic | 40.0% | |
| GTTGCAAAATGCATGGTTTC+AGG | - | chr5_2:30770652-30770671 | None:intergenic | 40.0% | |
| ! | AACCATGCATTTTGCAACCT+AGG | + | chr5_2:30770654-30770673 | Msa0767500:intron | 40.0% |
| ! | GCAACCTAGGCTTTATCTTA+TGG | + | chr5_2:30770667-30770686 | Msa0767500:intron | 40.0% |
| !! | TTCGGTGCCTAATGTAGATA+AGG | - | chr5_2:30771372-30771391 | None:intergenic | 40.0% |
| !! | ATCTACATTAGGCACCGAAT+TGG | + | chr5_2:30771373-30771392 | Msa0767500:intron | 40.0% |
| ATATCACTCCCTCTCCAATT+CGG | - | chr5_2:30771390-30771409 | None:intergenic | 40.0% | |
| !! | GGGAGTGATATTTTAGAGAC+TGG | + | chr5_2:30771399-30771418 | Msa0767500:intron | 40.0% |
| ACCTAGAGACCTAAGGAAAA+CGG | - | chr5_2:30771433-30771452 | None:intergenic | 40.0% | |
| ! | TTTTATGAGTATGGTGGCAG+AGG | + | chr5_2:30771536-30771555 | Msa0767500:intron | 40.0% |
| GAAAGCAGGGTCATTGAAAT+TGG | + | chr5_2:30771853-30771872 | Msa0767500:CDS | 40.0% | |
| GTCATTGAAATTGGAGAGGT+TGG | + | chr5_2:30771862-30771881 | Msa0767500:CDS | 40.0% | |
| GACATAGATAAGAAGGAGCA+AGG | + | chr5_2:30771893-30771912 | Msa0767500:CDS | 40.0% | |
| CTATGGTACAGATGTTGCAA+AGG | + | chr5_2:30771925-30771944 | Msa0767500:CDS | 40.0% | |
| GTTTGAGAACTATGCAATGC+TGG | + | chr5_2:30772012-30772031 | Msa0767500:CDS | 40.0% | |
| AAGCGCAGTTACACACATAT+TGG | - | chr5_2:30772190-30772209 | None:intergenic | 40.0% | |
| TGTAGTATAGCTAGGACTTC+AGG | + | chr5_2:30772234-30772253 | Msa0767500:three_prime_UTR | 40.0% | |
| GTAGTATAGCTAGGACTTCA+GGG | + | chr5_2:30772235-30772254 | Msa0767500:three_prime_UTR | 40.0% | |
| !! | GCTGATTTGGGATGTTCATC+TGG | + | chr5_2:30765954-30765973 | Msa0767500:CDS | 45.0% |
| AAGCCAGTGTAAACTATGGG+AGG | - | chr5_2:30766246-30766265 | None:intergenic | 45.0% | |
| ! | TATGGAGAAGTGGAGTGTCT+GGG | - | chr5_2:30766573-30766592 | None:intergenic | 45.0% |
| ! | ATATGGAGAAGTGGAGTGTC+TGG | - | chr5_2:30766574-30766593 | None:intergenic | 45.0% |
| TTTCCCAAGTAGTCTAGTGG+CGG | - | chr5_2:30766614-30766633 | None:intergenic | 45.0% | |
| AGACCTTGATCGAAGGAACA+AGG | - | chr5_2:30766970-30766989 | None:intergenic | 45.0% | |
| TTGCCTCTGTCAACATGTTC+AGG | - | chr5_2:30767047-30767066 | None:intergenic | 45.0% | |
| ACAGAGGCAACTCTTTCTTC+TGG | + | chr5_2:30767057-30767076 | Msa0767500:CDS | 45.0% | |
| CAGAGGCAACTCTTTCTTCT+GGG | + | chr5_2:30767058-30767077 | Msa0767500:CDS | 45.0% | |
| !! | CAAAATCGGCTTGTGAGATG+AGG | - | chr5_2:30767452-30767471 | None:intergenic | 45.0% |
| !! | CATCTCACAAGCCGATTTTG+TGG | + | chr5_2:30767452-30767471 | Msa0767500:intron | 45.0% |
| !! | TCTCACAAGCCGATTTTGTG+GGG | + | chr5_2:30767454-30767473 | Msa0767500:intron | 45.0% |
| ! | CGATTTTGTGGGGTTGTGTT+AGG | + | chr5_2:30767464-30767483 | Msa0767500:intron | 45.0% |
| CGACAACGTCTAAGAAATCG+TGG | - | chr5_2:30767495-30767514 | None:intergenic | 45.0% | |
| ! | TCTGATAGCAGGAAGCACAA+AGG | - | chr5_2:30767533-30767552 | None:intergenic | 45.0% |
| GAACATAGATGCCCCGATAA+CGG | - | chr5_2:30767559-30767578 | None:intergenic | 45.0% | |
| GCAATCCTTACCTCACAATC+CGG | + | chr5_2:30767648-30767667 | Msa0767500:intron | 45.0% | |
| CTCCAAAAAACCGGATTGTG+AGG | - | chr5_2:30767661-30767680 | None:intergenic | 45.0% | |
| TGACGGTCATACTTGATCGT+TGG | + | chr5_2:30767874-30767893 | Msa0767500:intron | 45.0% | |
| CATACAAGTCGTCCAAGTTG+GGG | - | chr5_2:30768145-30768164 | None:intergenic | 45.0% | |
| CACATACAAGTCGTCCAAGT+TGG | - | chr5_2:30768147-30768166 | None:intergenic | 45.0% | |
| GACGACTTGTATGTGCTATG+TGG | + | chr5_2:30768152-30768171 | Msa0767500:intron | 45.0% | |
| GTGTGATCCATGGTGAAGAA+TGG | - | chr5_2:30768431-30768450 | None:intergenic | 45.0% | |
| CTAAAACGGAAGAGTGGTAG+AGG | - | chr5_2:30768627-30768646 | None:intergenic | 45.0% | |
| GCGGTTGATCAAAGCGATAT+TGG | + | chr5_2:30768699-30768718 | Msa0767500:intron | 45.0% | |
| TCAGAGGCTAAACAATCCAC+GGG | + | chr5_2:30769084-30769103 | Msa0767500:intron | 45.0% | |
| ! | TATAGGGTGAAGGGAGTACA+AGG | - | chr5_2:30769304-30769323 | None:intergenic | 45.0% |
| TCCCTCATAACCCAACATAG+AGG | - | chr5_2:30769385-30769404 | None:intergenic | 45.0% | |
| ! | GTTCCTACTTTCTAGCCCAT+TGG | + | chr5_2:30770031-30770050 | Msa0767500:intron | 45.0% |
| !! | TCTCCAATGGGCTAGAAAGT+AGG | - | chr5_2:30770037-30770056 | None:intergenic | 45.0% |
| ! | TACTTTCTAGCCCATTGGAG+AGG | + | chr5_2:30770036-30770055 | Msa0767500:intron | 45.0% |
| CCACATCATTCCTCTCCAAT+GGG | - | chr5_2:30770049-30770068 | None:intergenic | 45.0% | |
| TCCACATCATTCCTCTCCAA+TGG | - | chr5_2:30770050-30770069 | None:intergenic | 45.0% | |
| GGGAGAATTGTTCTCTACAG+TGG | - | chr5_2:30770075-30770094 | None:intergenic | 45.0% | |
| CTGTAGAGAACAATTCTCCC+TGG | + | chr5_2:30770075-30770094 | Msa0767500:intron | 45.0% | |
| GAACAATTCTCCCTGGAGAA+CGG | + | chr5_2:30770082-30770101 | Msa0767500:intron | 45.0% | |
| ATCCATGGGCCCACAAAAAA+TGG | + | chr5_2:30770248-30770267 | Msa0767500:intron | 45.0% | |
| !!! | AACCATTTTTTGTGGGCCCA+TGG | - | chr5_2:30770253-30770272 | None:intergenic | 45.0% |
| AGGACTTGTGATAGGTGTGA+GGG | - | chr5_2:30770334-30770353 | None:intergenic | 45.0% | |
| ATAGAAACAGAGGCTCCGAA+TGG | + | chr5_2:30770527-30770546 | Msa0767500:intron | 45.0% | |
| AGCCTAGGTTGCAAAATGCA+TGG | - | chr5_2:30770659-30770678 | None:intergenic | 45.0% | |
| !! | ATTAGGCACCGAATTGGAGA+GGG | + | chr5_2:30771379-30771398 | Msa0767500:intron | 45.0% |
| ! | TCCGTTTTCCTTAGGTCTCT+AGG | + | chr5_2:30771429-30771448 | Msa0767500:intron | 45.0% |
| AGAGGATGGAGGTGATCTTA+GGG | + | chr5_2:30771554-30771573 | Msa0767500:intron | 45.0% | |
| ! | CTTAGGGTGTCAACCTAGTT+AGG | + | chr5_2:30771570-30771589 | Msa0767500:intron | 45.0% |
| CAGGGTCATTGAAATTGGAG+AGG | + | chr5_2:30771858-30771877 | Msa0767500:CDS | 45.0% | |
| TAGATAAGAAGGAGCAAGGC+AGG | + | chr5_2:30771897-30771916 | Msa0767500:CDS | 45.0% | |
| AGATAAGAAGGAGCAAGGCA+GGG | + | chr5_2:30771898-30771917 | Msa0767500:CDS | 45.0% | |
| !!! | AATAATTTATCAAAATTTTA+AGG | - | chr5_2:30765725-30765744 | None:intergenic | 5.0% |
| !!! | AATAATTTATCAAAATTTTA+AGG | - | chr5_2:30765725-30765744 | None:intergenic | 5.0% |
| !! | AAATTCTAAATATATAAAAT+CGG | - | chr5_2:30769764-30769783 | None:intergenic | 5.0% |
| TGCGTAATATATGCAGGGGC+CGG | + | chr5_2:30766538-30766557 | Msa0767500:intron | 50.0% | |
| ! | AGTGTCTGGGGTTCGAAATC+CGG | - | chr5_2:30766560-30766579 | None:intergenic | 50.0% |
| ! | ATGGAGAAGTGGAGTGTCTG+GGG | - | chr5_2:30766572-30766591 | None:intergenic | 50.0% |
| GGACCTGAACATGTTGACAG+AGG | + | chr5_2:30767041-30767060 | Msa0767500:CDS | 50.0% | |
| !! | GGAAATTCTAGAGTGGACCG+TGG | + | chr5_2:30768404-30768423 | Msa0767500:intron | 50.0% |
| CCATGGTGAAGAATGGTCCA+CGG | - | chr5_2:30768424-30768443 | None:intergenic | 50.0% | |
| !! | TGTTGGGCTGGACGTCTTTT+TGG | + | chr5_2:30768904-30768923 | Msa0767500:intron | 50.0% |
| GAATTGTCCTACGGGTTCTG+TGG | + | chr5_2:30768945-30768964 | Msa0767500:intron | 50.0% | |
| TGTTGGGTTATGAGGGAGTC+TGG | + | chr5_2:30769388-30769407 | Msa0767500:intron | 50.0% | |
| GTTGGGTTATGAGGGAGTCT+GGG | + | chr5_2:30769389-30769408 | Msa0767500:intron | 50.0% | |
| TTGGGTTATGAGGGAGTCTG+GGG | + | chr5_2:30769390-30769409 | Msa0767500:intron | 50.0% | |
| TGTTCCCTGCACATTCCTTG+AGG | + | chr5_2:30769996-30770015 | Msa0767500:intron | 50.0% | |
| CCCATTGGAGAGGAATGATG+TGG | + | chr5_2:30770046-30770065 | Msa0767500:intron | 50.0% | |
| TTGTTCTTGGCCGTTCTCCA+GGG | - | chr5_2:30770095-30770114 | None:intergenic | 50.0% | |
| TGGAGAACGGCCAAGAACAA+GGG | + | chr5_2:30770095-30770114 | Msa0767500:intron | 50.0% | |
| CAGGACTTGTGATAGGTGTG+AGG | - | chr5_2:30770335-30770354 | None:intergenic | 50.0% | |
| !! | CATTAGGCACCGAATTGGAG+AGG | + | chr5_2:30771378-30771397 | Msa0767500:intron | 50.0% |
| ! | GATTGGGCTCCGTTTTCCTT+AGG | + | chr5_2:30771421-30771440 | Msa0767500:intron | 50.0% |
| ATGAGTATGGTGGCAGAGGA+TGG | + | chr5_2:30771540-30771559 | Msa0767500:intron | 50.0% | |
| CAGAGGATGGAGGTGATCTT+AGG | + | chr5_2:30771553-30771572 | Msa0767500:intron | 50.0% | |
| CTGCCGCCACTAGACTACTT+GGG | + | chr5_2:30766608-30766627 | Msa0767500:intron | 55.0% | |
| ! | TCGTCCAAGTTGGGGTCAGA+GGG | - | chr5_2:30768137-30768156 | None:intergenic | 55.0% |
| CCGTGGACCATTCTTCACCA+TGG | + | chr5_2:30768421-30768440 | Msa0767500:intron | 55.0% | |
| !! | GGGCTGGACGTCTTTTTGGT+TGG | + | chr5_2:30768908-30768927 | Msa0767500:intron | 55.0% |
| GAGCAATCCACAGAACCCGT+AGG | - | chr5_2:30768955-30768974 | None:intergenic | 55.0% | |
| CAATTGCTCTATGCGTCCCG+TGG | - | chr5_2:30769103-30769122 | None:intergenic | 55.0% | |
| CTTGTTCTTGGCCGTTCTCC+AGG | - | chr5_2:30770096-30770115 | None:intergenic | 55.0% | |
| CTGGAGAACGGCCAAGAACA+AGG | + | chr5_2:30770094-30770113 | Msa0767500:intron | 55.0% | |
| AGTATGGTGGCAGAGGATGG+AGG | + | chr5_2:30771543-30771562 | Msa0767500:intron | 55.0% | |
| GCTGCCGCCACTAGACTACT+TGG | + | chr5_2:30766607-30766626 | Msa0767500:intron | 60.0% | |
| TGGTCCCTCTGACCCCAACT+TGG | + | chr5_2:30768130-30768149 | Msa0767500:intron | 60.0% | |
| ! | GTCGTCCAAGTTGGGGTCAG+AGG | - | chr5_2:30768138-30768157 | None:intergenic | 60.0% |
| GAATGTGCAGGGAACAGCGC+TGG | - | chr5_2:30769992-30770011 | None:intergenic | 60.0% | |
| GAGCAAGGCAGGGAGAGCTA+TGG | + | chr5_2:30771908-30771927 | Msa0767500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 30765564 | 30772260 | 30765564 | ID=Msa0767500;Name=Msa0767500 |
| chr5_2 | mRNA | 30765564 | 30772260 | 30765564 | ID=Msa0767500-mRNA-1;Parent=Msa0767500;Name=Msa0767500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=28|1|1|1|1|1|4|158|361 |
| chr5_2 | exon | 30765564 | 30765666 | 30765564 | ID=Msa0767500-mRNA-1:exon:11524;Parent=Msa0767500-mRNA-1 |
| chr5_2 | exon | 30765867 | 30766271 | 30765867 | ID=Msa0767500-mRNA-1:exon:11525;Parent=Msa0767500-mRNA-1 |
| chr5_2 | exon | 30766846 | 30767118 | 30766846 | ID=Msa0767500-mRNA-1:exon:11526;Parent=Msa0767500-mRNA-1 |
| chr5_2 | exon | 30771770 | 30772260 | 30771770 | ID=Msa0767500-mRNA-1:exon:11527;Parent=Msa0767500-mRNA-1 |
| chr5_2 | five_prime_UTR | 30765564 | 30765591 | 30765564 | ID=Msa0767500-mRNA-1:five_prime_utr;Parent=Msa0767500-mRNA-1 |
| chr5_2 | CDS | 30765592 | 30765666 | 30765592 | ID=Msa0767500-mRNA-1:cds;Parent=Msa0767500-mRNA-1 |
| chr5_2 | CDS | 30765867 | 30766271 | 30765867 | ID=Msa0767500-mRNA-1:cds;Parent=Msa0767500-mRNA-1 |
| chr5_2 | CDS | 30766846 | 30767118 | 30766846 | ID=Msa0767500-mRNA-1:cds;Parent=Msa0767500-mRNA-1 |
| chr5_2 | CDS | 30771770 | 30772102 | 30771770 | ID=Msa0767500-mRNA-1:cds;Parent=Msa0767500-mRNA-1 |
| chr5_2 | three_prime_UTR | 30772103 | 30772260 | 30772103 | ID=Msa0767500-mRNA-1:three_prime_utr;Parent=Msa0767500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
