AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560500 MtrunA17_Chr4g0050561 99.520 417 2 0 1 417 1 417 0.0 851
Msa0560500 MtrunA17_Chr8g0345461 53.602 347 150 4 61 403 72 411 3.03e-120 356
Msa0560500 MtrunA17_Chr1g0200081 52.841 352 154 5 61 403 72 420 1.35e-117 350
Msa0560500 MtrunA17_Chr7g0262801 48.556 381 185 4 30 407 65 437 8.84e-115 343
Msa0560500 MtrunA17_Chr1g0182711 52.000 325 155 1 83 407 115 438 4.74e-114 341
Msa0560500 MtrunA17_Chr3g0141901 48.603 358 169 2 58 401 24 380 7.73e-112 333
Msa0560500 MtrunA17_Chr3g0145011 47.253 364 184 2 45 401 21 383 3.34e-111 332
Msa0560500 MtrunA17_Chr1g0192151 52.740 292 137 1 113 404 124 414 3.44e-106 320
Msa0560500 MtrunA17_Chr4g0014731 52.740 292 137 1 113 404 125 415 4.18e-106 320
Msa0560500 MtrunA17_Chr3g0108321 49.632 272 136 1 70 341 73 343 6.93e-89 274
Msa0560500 MtrunA17_Chr7g0217421 39.928 278 154 5 127 402 17 283 7.70e-62 205
Msa0560500 MtrunA17_Chr6g0476861 41.797 256 146 2 161 414 202 456 2.27e-61 210
Msa0560500 MtrunA17_Chr1g0180791 44.915 236 126 2 158 393 207 438 2.46e-61 212
Msa0560500 MtrunA17_Chr1g0180791 35.905 337 202 7 52 384 379 705 4.99e-61 211
Msa0560500 MtrunA17_Chr7g0264521 34.043 376 221 8 52 410 380 745 2.69e-61 212
Msa0560500 MtrunA17_Chr7g0264521 44.068 236 128 2 158 393 208 439 4.67e-60 208
Msa0560500 MtrunA17_Chr4g0052411 42.276 246 140 2 157 402 230 473 5.37e-61 209
Msa0560500 MtrunA17_Chr7g0255651 41.870 246 142 1 139 384 265 509 7.38e-61 207
Msa0560500 MtrunA17_Chr7g0255651 28.279 244 160 6 149 383 4 241 2.33e-20 93.6
Msa0560500 MtrunA17_Chr3g0143721 40.304 263 153 3 149 409 240 500 2.37e-60 208
Msa0560500 MtrunA17_Chr2g0327121 40.873 252 147 2 133 384 458 707 3.98e-60 209
Msa0560500 MtrunA17_Chr2g0327121 42.798 243 135 2 151 393 202 440 6.08e-59 205
Msa0560500 MtrunA17_Chr2g0297281 41.463 246 142 2 157 402 287 530 1.65e-59 206
Msa0560500 MtrunA17_Chr7g0248361 35.913 323 182 5 114 414 132 451 1.28e-58 202
Msa0560500 MtrunA17_Chr3g0094871 41.473 258 147 3 161 416 16 271 3.07e-58 196
Msa0560500 MtrunA17_Chr7g0260601 40.684 263 141 3 161 415 245 500 7.45e-58 201
Msa0560500 MtrunA17_Chr8g0388371 40.637 251 141 2 158 401 406 655 9.99e-57 200
Msa0560500 MtrunA17_Chr7g0255691 42.276 246 141 1 139 384 269 513 2.62e-54 189
Msa0560500 MtrunA17_Chr7g0255691 35.242 227 132 5 159 377 20 239 8.91e-32 127
Msa0560500 MtrunA17_Chr5g0429571 40.385 260 148 3 151 404 308 566 3.16e-54 192
Msa0560500 MtrunA17_Chr4g0031821 39.453 256 152 2 161 414 325 579 1.47e-53 191
Msa0560500 MtrunA17_Chr3g0104211 40.157 254 145 3 157 404 305 557 5.30e-53 189
Msa0560500 MtrunA17_Chr8g0362771 41.224 245 140 2 158 402 239 479 8.01e-53 187
Msa0560500 MtrunA17_Chr7g0255721 39.163 263 156 2 152 412 681 941 3.78e-51 184
Msa0560500 MtrunA17_Chr7g0255721 33.036 224 143 3 161 383 391 608 8.14e-32 128
Msa0560500 MtrunA17_Chr7g0255641 38.403 263 158 2 152 412 654 914 4.10e-51 184
Msa0560500 MtrunA17_Chr7g0255641 35.981 214 120 5 195 397 432 639 3.19e-30 123
Msa0560500 MtrunA17_Chr2g0331161 38.866 247 145 3 150 394 409 651 1.61e-50 182
Msa0560500 MtrunA17_Chr4g0033451 39.921 253 140 5 157 401 381 629 1.98e-50 183
Msa0560500 MtrunA17_Chr1g0158881 38.976 254 149 2 157 410 330 577 1.28e-48 176
Msa0560500 MtrunA17_Chr6g0456351 37.918 269 146 5 158 417 319 575 3.37e-48 173
Msa0560500 MtrunA17_Chr3g0135721 38.866 247 146 2 156 402 224 465 4.21e-48 174
Msa0560500 MtrunA17_Chr3g0129971 42.489 233 128 3 157 384 297 528 6.38e-48 175
Msa0560500 MtrunA17_Chr4g0004121 36.054 294 154 7 150 416 236 522 1.04e-47 171
Msa0560500 MtrunA17_Chr3g0135761 39.669 242 141 2 161 402 227 463 5.52e-47 171
Msa0560500 MtrunA17_Chr7g0255901 37.903 248 148 5 148 392 631 875 6.65e-47 172
Msa0560500 MtrunA17_Chr4g0026631 40.650 246 133 8 139 380 110 346 5.92e-46 164
Msa0560500 MtrunA17_Chr2g0316851 39.224 232 131 4 158 383 596 823 1.32e-45 169
Msa0560500 MtrunA17_Chr5g0432631 38.000 250 146 3 155 402 228 470 1.84e-45 168
Msa0560500 MtrunA17_Chr4g0043381 40.175 229 133 1 156 384 837 1061 1.91e-45 168
Msa0560500 MtrunA17_Chr4g0043381 28.509 228 131 6 185 394 580 793 4.96e-11 65.1
Msa0560500 MtrunA17_Chr2g0277831 34.962 266 164 3 122 385 502 760 1.73e-44 165
Msa0560500 MtrunA17_Chr2g0277831 37.959 245 129 5 161 392 248 482 3.25e-39 149
Msa0560500 MtrunA17_Chr2g0321241 39.167 240 133 8 145 380 121 351 7.84e-44 158
Msa0560500 MtrunA17_Chr5g0397121 37.500 240 141 5 157 393 514 747 4.42e-43 161
Msa0560500 MtrunA17_Chr4g0052271 37.344 241 143 5 154 392 117 351 4.46e-43 155
Msa0560500 MtrunA17_Chr7g0246111 37.200 250 145 6 139 384 195 436 9.66e-43 157
Msa0560500 MtrunA17_Chr3g0127401 38.889 234 132 5 155 384 80 306 4.21e-42 152
Msa0560500 MtrunA17_Chr2g0327231 43.713 167 93 1 151 317 341 506 5.58e-42 154
Msa0560500 MtrunA17_Chr2g0327231 44.211 95 49 1 151 245 148 238 2.18e-20 93.2
Msa0560500 MtrunA17_Chr1g0204031 40.260 231 129 5 157 384 558 782 1.60e-41 156
Msa0560500 MtrunA17_Chr3g0086411 35.473 296 158 6 141 408 200 490 4.96e-41 152
Msa0560500 MtrunA17_Chr3g0086411 38.889 144 83 2 244 382 7 150 1.86e-20 93.6
Msa0560500 MtrunA17_Chr5g0432641 36.290 248 153 3 163 410 198 440 5.63e-41 154
Msa0560500 MtrunA17_Chr8g0387641 36.910 233 138 5 155 384 520 746 7.70e-41 154
Msa0560500 MtrunA17_Chr1g0195741 39.224 232 131 5 157 384 939 1164 8.77e-41 155
Msa0560500 MtrunA17_Chr3g0086401 35.017 297 158 5 141 407 370 661 9.27e-41 153
Msa0560500 MtrunA17_Chr3g0086401 38.222 225 121 7 159 373 96 312 8.68e-35 136
Msa0560500 MtrunA17_Chr1g0202371 38.095 231 133 5 157 384 398 621 2.18e-40 152
Msa0560500 MtrunA17_Chr4g0038101 38.261 230 134 4 158 384 723 947 8.46e-40 152
Msa0560500 MtrunA17_Chr3g0116131 38.938 226 128 5 157 378 903 1122 1.10e-39 151
Msa0560500 MtrunA17_Chr3g0127431 38.034 234 134 5 155 384 83 309 4.41e-39 144
Msa0560500 MtrunA17_Chr1g0195731 36.638 232 137 5 157 384 935 1160 7.65e-39 149
Msa0560500 MtrunA17_Chr6g0462581 37.931 232 132 7 157 384 501 724 1.69e-38 147
Msa0560500 MtrunA17_Chr3g0135781 44.785 163 83 3 158 319 57 213 2.21e-37 135
Msa0560500 MtrunA17_Chr1g0202381 37.288 236 129 6 157 384 469 693 3.92e-37 144
Msa0560500 MtrunA17_Chr4g0047411 35.424 271 142 7 161 402 180 446 6.88e-37 142
Msa0560500 MtrunA17_Chr6g0459561 31.597 288 166 9 150 416 376 653 2.41e-36 140
Msa0560500 MtrunA17_Chr6g0459541 32.500 280 154 8 133 384 20 292 1.80e-35 134
Msa0560500 MtrunA17_Chr1g0168321 39.267 191 114 1 226 414 196 386 2.62e-35 136
Msa0560500 MtrunA17_Chr8g0357301 31.276 243 148 4 179 412 492 724 9.22e-31 125
Msa0560500 MtrunA17_Chr2g0289231 31.897 232 136 7 157 377 298 518 6.25e-30 121
Msa0560500 MtrunA17_Chr6g0459551 30.597 268 142 8 150 384 96 352 3.27e-29 118
Msa0560500 MtrunA17_Chr1g0190401 34.711 242 145 8 141 373 659 896 2.59e-28 117
Msa0560500 MtrunA17_Chr4g0062081 62.338 77 28 1 161 236 12 88 1.99e-27 104
Msa0560500 MtrunA17_Chr5g0432391 34.940 166 100 2 234 397 81 240 1.32e-21 96.3
Msa0560500 MtrunA17_Chr6g0459531 28.333 240 132 9 150 384 61 265 5.12e-20 90.1
Msa0560500 MtrunA17_Chr8g0372701 33.520 179 99 7 156 326 222 388 9.79e-15 75.9
Msa0560500 MtrunA17_Chr6g0450161 35.099 151 89 5 194 343 364 506 1.10e-14 75.9
Msa0560500 MtrunA17_Chr3g0116941 30.000 170 101 4 196 351 199 364 1.30e-13 72.4
Msa0560500 MtrunA17_Chr5g0404651 33.125 160 95 5 171 326 229 380 2.90e-13 71.2
Msa0560500 MtrunA17_Chr5g0404291 35.417 144 84 5 194 336 389 524 2.92e-13 71.6
Msa0560500 MtrunA17_Chr2g0315971 28.814 177 110 6 163 332 477 644 3.77e-13 71.2
Msa0560500 MtrunA17_Chr2g0315971 28.022 182 115 5 157 332 196 367 1.78e-11 66.2
Msa0560500 MtrunA17_Chr4g0039781 33.113 151 92 5 194 343 370 512 6.67e-13 70.5
Msa0560500 MtrunA17_Chr2g0315911 29.609 179 105 7 163 332 210 376 1.08e-12 69.3
Msa0560500 MtrunA17_Chr2g0315921 32.468 154 90 5 183 332 236 379 3.81e-12 67.8
Msa0560500 MtrunA17_Chr6g0466811 29.016 193 113 7 163 341 215 397 2.36e-11 65.5
Msa0560500 MtrunA17_Chr2g0315991 30.000 160 96 6 179 332 220 369 2.76e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560500 AT5G19990.1 94.033 419 23 1 1 417 1 419 0.0 798
Msa0560500 AT5G19990.3 94.033 419 23 1 1 417 1 419 0.0 798
Msa0560500 AT5G20000.1 93.079 419 27 1 1 417 1 419 0.0 790
Msa0560500 AT5G19990.2 98.864 352 4 0 66 417 10 361 0.0 710
Msa0560500 AT1G53750.1 53.602 347 150 4 61 403 72 411 6.33e-120 355
Msa0560500 AT2G20140.1 47.090 378 195 2 30 407 63 435 2.45e-114 342
Msa0560500 AT4G29040.1 47.090 378 195 2 30 407 63 435 5.17e-114 341
Msa0560500 AT5G43010.1 49.441 358 166 2 58 401 24 380 7.90e-114 339
Msa0560500 AT1G53780.1 52.738 347 153 3 61 403 244 583 2.70e-113 344
Msa0560500 AT1G53780.4 52.738 347 153 3 61 403 244 583 2.70e-113 344
Msa0560500 AT1G53780.3 52.738 347 153 3 61 403 243 582 2.74e-113 344
Msa0560500 AT1G53780.2 52.738 347 153 3 61 403 265 604 6.46e-113 344
Msa0560500 AT1G45000.1 49.296 355 165 2 61 401 27 380 2.31e-112 335
Msa0560500 AT1G09100.1 52.740 292 137 1 113 404 124 414 2.80e-106 320
Msa0560500 AT3G05530.1 52.740 292 137 1 113 404 125 415 1.30e-105 319
Msa0560500 AT5G58290.1 44.444 378 196 3 31 407 39 403 7.42e-105 317
Msa0560500 AT1G45000.2 47.036 253 119 2 61 299 27 278 1.47e-71 228
Msa0560500 AT1G06430.1 42.683 246 139 2 157 402 218 461 1.02e-62 214
Msa0560500 AT1G06430.3 42.683 246 139 2 157 402 218 461 1.02e-62 214
Msa0560500 AT1G06430.2 42.683 246 139 2 157 402 218 461 1.02e-62 214
Msa0560500 AT2G30950.1 42.276 246 140 2 157 402 225 468 5.71e-62 213
Msa0560500 AT2G30950.2 42.276 246 140 2 157 402 225 468 5.71e-62 213
Msa0560500 AT2G30950.3 42.276 246 140 2 157 402 225 468 5.71e-62 213
Msa0560500 AT2G30950.4 42.276 246 140 2 157 402 229 472 7.29e-62 212
Msa0560500 AT3G09840.1 43.621 243 133 2 151 393 199 437 1.67e-61 213
Msa0560500 AT3G09840.1 42.128 235 136 0 150 384 471 705 1.40e-59 207
Msa0560500 AT5G03340.1 43.210 243 134 2 151 393 199 437 1.35e-60 210
Msa0560500 AT5G03340.1 42.128 235 135 1 150 384 471 704 1.44e-60 210
Msa0560500 AT3G53230.1 36.012 336 203 6 52 384 379 705 1.89e-60 210
Msa0560500 AT3G53230.1 41.870 246 139 2 151 396 200 441 3.29e-59 207
Msa0560500 AT5G42270.1 39.924 263 154 3 149 409 238 498 2.24e-60 208
Msa0560500 AT1G50250.1 39.544 263 155 3 149 409 250 510 2.26e-59 206
Msa0560500 AT5G15250.1 39.837 246 146 2 157 402 222 465 3.25e-57 199
Msa0560500 AT2G03670.1 41.463 246 144 0 139 384 266 511 1.53e-56 196
Msa0560500 AT2G03670.1 36.214 243 147 3 161 397 24 264 3.12e-44 162
Msa0560500 AT5G58870.1 40.541 259 151 2 157 413 327 584 2.38e-55 196
Msa0560500 AT4G23940.1 39.768 259 148 2 161 412 432 689 4.09e-55 196
Msa0560500 AT1G07510.1 40.467 257 150 2 161 415 329 584 4.55e-55 195
Msa0560500 AT5G15250.2 37.175 269 144 4 157 402 222 488 6.34e-55 190
Msa0560500 AT3G56690.1 41.870 246 141 1 139 384 704 947 6.56e-55 196
Msa0560500 AT3G56690.1 38.393 224 132 3 161 383 387 605 4.50e-42 159
Msa0560500 AT3G47060.1 39.382 259 154 2 157 413 323 580 2.72e-54 193
Msa0560500 AT2G29080.1 42.412 257 144 3 161 415 324 578 6.99e-52 186
Msa0560500 AT3G16290.1 38.800 250 147 3 150 397 401 646 3.37e-50 182
Msa0560500 AT1G05910.1 39.044 251 141 4 155 398 377 622 4.31e-50 182
Msa0560500 AT5G64580.1 40.329 243 137 4 157 393 314 554 8.34e-50 181
Msa0560500 AT2G26140.1 40.081 247 143 2 156 402 224 465 2.79e-49 178
Msa0560500 AT3G02450.1 40.079 252 144 3 152 401 327 573 5.05e-49 176
Msa0560500 AT5G53170.1 38.976 254 149 2 157 410 360 607 1.46e-48 177
Msa0560500 AT2G34560.1 37.594 266 153 6 154 411 98 358 2.40e-47 167
Msa0560500 AT2G34560.2 37.594 266 153 6 154 411 107 367 3.10e-47 166
Msa0560500 AT1G03000.1 39.749 239 137 6 152 387 651 885 4.22e-47 173
Msa0560500 AT1G80350.1 36.395 294 153 8 150 416 230 516 5.46e-47 169
Msa0560500 AT5G08470.3 41.176 238 129 4 158 393 834 1062 1.11e-45 169
Msa0560500 AT5G08470.1 41.176 238 129 4 158 393 843 1071 1.11e-45 169
Msa0560500 AT2G03670.2 36.585 246 142 4 161 397 24 264 2.08e-45 162
Msa0560500 AT2G03670.2 38.854 157 96 0 139 295 266 422 5.61e-29 117
Msa0560500 AT3G15120.1 39.224 232 129 4 158 382 718 944 2.24e-44 166
Msa0560500 AT3G15120.2 39.224 232 129 4 158 382 728 954 2.59e-44 166
Msa0560500 AT2G27600.1 39.837 246 135 8 139 380 112 348 3.65e-44 159
Msa0560500 AT2G45500.4 38.618 246 137 8 144 384 68 304 2.41e-43 155
Msa0560500 AT2G45500.3 38.618 246 137 8 144 384 68 304 2.41e-43 155
Msa0560500 AT3G01610.2 39.485 233 135 3 153 384 522 749 7.87e-43 160
Msa0560500 AT3G01610.2 35.223 247 144 3 148 383 222 463 6.53e-39 149
Msa0560500 AT3G01610.1 39.485 233 135 3 153 384 522 749 8.00e-43 160
Msa0560500 AT3G01610.1 35.223 247 144 3 148 383 222 463 7.10e-39 149
Msa0560500 AT2G45500.2 38.618 246 137 8 144 384 201 437 3.64e-42 155
Msa0560500 AT2G45500.1 38.189 254 143 8 136 384 197 441 4.47e-42 155
Msa0560500 AT2G45500.5 38.189 254 143 8 136 384 203 447 4.91e-42 155
Msa0560500 AT3G19740.1 39.827 231 129 5 158 384 703 927 1.51e-41 157
Msa0560500 AT4G02480.1 37.931 232 134 5 157 384 961 1186 4.89e-41 156
Msa0560500 AT1G50140.3 39.394 231 130 5 158 384 713 937 1.09e-40 155
Msa0560500 AT1G50140.1 39.394 231 130 5 158 384 713 937 1.09e-40 155
Msa0560500 AT1G50140.4 39.394 231 130 5 158 384 713 937 1.09e-40 155
Msa0560500 AT1G50140.2 39.394 231 130 5 158 384 691 915 1.17e-40 154
Msa0560500 AT1G50140.5 39.394 231 130 5 158 384 691 915 1.17e-40 154
Msa0560500 AT4G28000.3 37.229 231 135 6 157 384 518 741 5.75e-40 152
Msa0560500 AT4G28000.2 37.229 231 135 6 157 384 518 741 7.45e-40 152
Msa0560500 AT4G28000.1 37.229 231 135 6 157 384 516 739 7.85e-40 152
Msa0560500 AT5G53540.1 35.206 267 150 7 155 405 83 342 8.46e-40 147
Msa0560500 AT4G24860.1 36.910 233 139 4 155 384 816 1043 1.21e-39 152
Msa0560500 AT4G24860.3 36.910 233 139 4 155 384 814 1041 1.29e-39 152
Msa0560500 AT4G24860.4 36.910 233 139 4 155 384 789 1016 1.76e-39 151
Msa0560500 AT4G24860.2 36.910 233 139 4 155 384 812 1039 1.78e-39 151
Msa0560500 AT1G02890.1 37.500 232 135 5 157 384 942 1167 2.10e-39 151
Msa0560500 AT1G64110.1 36.797 231 137 5 157 384 514 738 8.73e-39 149
Msa0560500 AT1G64110.5 36.797 231 137 5 157 384 517 741 8.95e-39 149
Msa0560500 AT1G64110.3 36.797 231 137 5 157 384 517 741 8.95e-39 149
Msa0560500 AT1G64110.2 36.797 231 137 5 157 384 519 743 9.25e-39 149
Msa0560500 AT1G64110.4 36.797 231 137 5 157 384 519 743 9.25e-39 149
Msa0560500 AT4G27680.1 36.752 234 137 5 155 384 80 306 1.41e-38 144
Msa0560500 AT4G04910.1 35.556 270 141 7 161 401 217 482 1.98e-37 144
Msa0560500 AT5G52882.1 36.364 231 137 6 157 384 515 738 2.79e-37 144
Msa0560500 AT3G27120.1 32.168 286 167 9 150 416 394 671 1.56e-36 142
Msa0560500 AT1G79560.2 34.234 222 131 3 181 393 514 729 5.09e-33 132
Msa0560500 AT1G79560.1 34.234 222 131 3 181 393 514 729 5.48e-33 132
Msa0560500 AT1G79560.3 34.234 222 131 3 181 393 514 729 6.22e-33 132
Msa0560500 AT1G62130.2 33.195 241 135 7 157 393 744 962 5.44e-30 123
Msa0560500 AT1G62130.1 33.195 241 135 7 157 393 751 969 6.33e-30 123
Msa0560500 AT4G04180.2 33.761 234 129 7 157 377 312 532 1.00e-29 121
Msa0560500 AT4G04180.1 33.761 234 129 7 157 377 317 537 1.05e-29 121
Msa0560500 AT3G04340.1 32.103 271 161 9 120 373 736 1000 1.21e-25 110
Msa0560500 AT5G08470.2 40.268 149 85 1 158 306 843 987 3.08e-25 108
Msa0560500 AT1G02890.2 31.466 232 121 6 157 384 942 1139 6.99e-24 105
Msa0560500 AT5G17760.1 32.022 178 106 6 156 326 216 385 1.90e-14 75.5
Msa0560500 AT4G24710.3 29.375 160 97 3 196 341 217 374 4.80e-14 74.3
Msa0560500 AT4G24710.1 29.375 160 97 3 196 341 205 362 4.83e-14 73.9
Msa0560500 AT2G18193.1 30.857 175 109 4 156 326 206 372 1.58e-13 72.8
Msa0560500 AT4G24710.4 30.159 126 74 2 196 307 217 342 1.05e-12 69.3
Msa0560500 AT4G24710.2 30.159 126 74 2 196 307 217 342 1.05e-12 69.3
Msa0560500 AT5G16930.1 32.450 151 93 5 194 343 399 541 1.15e-12 70.1
Msa0560500 AT2G18330.1 34.028 144 86 5 194 336 386 521 1.38e-12 70.1
Msa0560500 AT4G36580.1 33.333 144 87 5 194 336 383 518 2.92e-12 68.9
Msa0560500 AT3G03060.1 32.450 151 93 5 194 343 387 529 4.11e-12 68.6
Msa0560500 AT5G17740.1 29.282 181 110 6 156 326 208 380 9.96e-12 67.0
Msa0560500 AT3G50930.1 31.319 182 105 8 156 326 262 434 1.50e-11 66.6
Msa0560500 AT3G50940.1 30.178 169 105 5 163 326 216 376 2.05e-11 65.9

Find 117 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTAAAATTAAGAGTTTA+AGG 0.155258 4_1:-59797189 Msa0560500:three_prime_UTR
AAAAGCTCAGGATGTTTAAT+TGG 0.236938 4_1:+59799819 None:intergenic
TCACAGGGTGTCTTGCTCTA+TGG 0.253894 4_1:-59799678 Msa0560500:intron
CAAACCTCTTCATTAGGATT+TGG 0.256280 4_1:+59798701 None:intergenic
CTCCCCTTGTTTGGTTGGTT+TGG 0.269659 4_1:+59802419 None:intergenic
ACTTGAGTCTATAAAATTAA+AGG 0.291828 4_1:-59797163 Msa0560500:three_prime_UTR
GGAAGAACTGCAGCTTCTTC+AGG 0.294426 4_1:-59801218 Msa0560500:CDS
CTTACCGCACTTTCAGTTCA+TGG 0.305335 4_1:-59797340 Msa0560500:three_prime_UTR
GTTGGGAGGGTACTCGATTT+TGG 0.314851 4_1:+59802732 None:intergenic
TCAACAACATATTTCCCTTC+TGG 0.316681 4_1:+59800152 None:intergenic
TGCTCCATCAATTATCTTCA+TGG 0.351085 4_1:-59799118 Msa0560500:CDS
TTAAATTCATTCTTCTTGAA+TGG 0.356511 4_1:+59798545 None:intergenic
ACGGAGACCCTCCCCTTGTT+TGG 0.367288 4_1:+59802410 None:intergenic
AAGATGCAAACCTCTTCATT+AGG 0.374465 4_1:+59798695 None:intergenic
AAACTAAAGAGAGTAATAAA+AGG 0.377403 4_1:+59797244 None:intergenic
GAGAAGGTTCTAGAATGGTT+AGG 0.383338 4_1:-59799551 Msa0560500:CDS
ATTTAAAATTAAGAGTTTAA+GGG 0.384322 4_1:-59797188 Msa0560500:three_prime_UTR
TGTACATTCATCAGGGTGTC+TGG 0.388654 4_1:-59799600 Msa0560500:CDS
CACAGGGTGTCTTGCTCTAT+GGG 0.390742 4_1:-59799677 Msa0560500:intron
TCGTCCATGAAGATAATTGA+TGG 0.392466 4_1:+59799114 None:intergenic
ATACTGATTGTACATTCATC+AGG 0.399410 4_1:-59799608 Msa0560500:CDS
TTATCGTACTGAATTTATAA+AGG 0.399505 4_1:-59802666 Msa0560500:intron
TTTGGACAGTGAGGATGCTT+CGG 0.403502 4_1:-59801240 Msa0560500:intron
GGATCTGCTCGTATGGAATC+TGG 0.411007 4_1:-59799078 Msa0560500:CDS
AACGTAACGAGCTCAATTCT+AGG 0.412070 4_1:-59802308 Msa0560500:CDS
AGCATCTGGTGCTGAGCTTA+AGG 0.412390 4_1:-59798479 Msa0560500:intron
ACCAATGGATCAACTTTGCT+TGG 0.422834 4_1:+59800041 None:intergenic
TTCTTCTTCTTCGGACGCGA+TGG 0.425395 4_1:+59802696 None:intergenic
CACCAATCGGATTGATATCC+TGG 0.427746 4_1:-59798771 Msa0560500:CDS
TGTCAATCCGTCCAGGTCTC+AGG 0.427849 4_1:+59798738 None:intergenic
ATGGACGAAATTGACAGTAT+TGG 0.429793 4_1:-59799099 Msa0560500:CDS
CAGGAGCCTGGTTCTTATGT+TGG 0.430180 4_1:-59801199 Msa0560500:CDS
TTGGACAGTGAGGATGCTTC+GGG 0.433244 4_1:-59801239 Msa0560500:intron
GTCTTGCTCTATGGGCCACC+TGG 0.438579 4_1:-59799669 Msa0560500:CDS
CTCTATGGGCCACCTGGTAC+AGG 0.438619 4_1:-59799663 Msa0560500:CDS
ATCATGTCATATGTAGAATC+AGG 0.441088 4_1:+59799993 None:intergenic
TCCAAGCAAAGTTGATCCAT+TGG 0.453561 4_1:-59800042 Msa0560500:CDS
AGTTGATCGGATCTGATCTA+TGG 0.459323 4_1:-59802499 Msa0560500:exon
TAGGCTGTGTGCACTGAAGC+TGG 0.461439 4_1:-59797540 Msa0560500:CDS
TGAGACCTGGACGGATTGAC+AGG 0.462916 4_1:-59798736 Msa0560500:CDS
TTGGCAGAGCAATGCTCCTC+CGG 0.467372 4_1:+59802438 None:intergenic
AGAAGGTTCTAGAATGGTTA+GGG 0.470154 4_1:-59799550 Msa0560500:CDS
CAGTATTGGATCTGCTCGTA+TGG 0.473028 4_1:-59799085 Msa0560500:CDS
CTGCAGCTTCTTCAGGAGCC+TGG 0.474864 4_1:-59801211 Msa0560500:CDS
TTCGGACGCGATGGTGAAGT+TGG 0.476366 4_1:+59802705 None:intergenic
AGACCCTCCCCTTGTTTGGT+TGG 0.479760 4_1:+59802414 None:intergenic
GTCTCAGGAGTGCTTGATCC+AGG 0.483737 4_1:+59798753 None:intergenic
TGAAGCTTCCAATAAGATCA+AGG 0.484032 4_1:-59798989 Msa0560500:intron
AACATTGTTGGCTAGGGCAG+TGG 0.488091 4_1:-59799637 Msa0560500:CDS
AAGCTTCAAATCCATCCAAC+TGG 0.490388 4_1:+59799004 None:intergenic
TGAAGTGCAGCGTACTATGC+TGG 0.493786 4_1:-59799037 Msa0560500:CDS
GAGAAGATGAATGGAGCATC+TGG 0.497037 4_1:-59798493 Msa0560500:CDS
ATGGTGAAGTTGGTGATGTT+GGG 0.498666 4_1:+59802715 None:intergenic
GAACTTGTTCAGAAATACAT+TGG 0.500672 4_1:-59799573 Msa0560500:CDS
CGAAGAGCAACTCTAGTAGA+TGG 0.500788 4_1:+59800095 None:intergenic
GAACTTCTCAACCAGTTGGA+TGG 0.502365 4_1:-59799015 Msa0560500:CDS
ACGTAACGAGCTCAATTCTA+GGG 0.502522 4_1:-59802307 Msa0560500:CDS
GAAGCATGCCGAGGGTGCAC+CGG 0.505872 4_1:-59802457 Msa0560500:CDS
AAGATTGCTGAGAAGATGAA+TGG 0.505915 4_1:-59798502 Msa0560500:CDS
ATCTTCCTGTCAATCCGTCC+AGG 0.508744 4_1:+59798731 None:intergenic
ATGCTCCTCCGGTGCACCCT+CGG 0.511471 4_1:+59802449 None:intergenic
CATTGGAGAAGGTTCTAGAA+TGG 0.526027 4_1:-59799556 Msa0560500:CDS
ACATGTCATTGAGGAAGTTG+TGG 0.527779 4_1:-59797425 Msa0560500:CDS
GTTCAGAAATACATTGGAGA+AGG 0.530083 4_1:-59799567 Msa0560500:CDS
GATGGTGAAGTTGGTGATGT+TGG 0.530205 4_1:+59802714 None:intergenic
CTTTCAGTTCATGGTCACTC+TGG 0.534554 4_1:-59797331 Msa0560500:three_prime_UTR
GATTCTACATATGACATGAT+TGG 0.538886 4_1:-59799990 Msa0560500:CDS
GTGAAGTTGGTGATGTTGGG+AGG 0.539661 4_1:+59802718 None:intergenic
CAGGATATCAATCCGATTGG+TGG 0.543342 4_1:+59798772 None:intergenic
TTTCTTCAGGTCCATCCAGA+AGG 0.548623 4_1:-59800167 Msa0560500:intron
AAGGTACAACTGAACAAGAA+AGG 0.548726 4_1:+59797263 None:intergenic
GGCGAAGTCGTTAAAGTGAT+GGG 0.549245 4_1:-59801178 Msa0560500:CDS
GCATGCCGAGGGTGCACCGG+AGG 0.551420 4_1:-59802454 Msa0560500:CDS
GCTCGTATGGAATCTGGAAG+TGG 0.557452 4_1:-59799072 Msa0560500:CDS
TGGCGAAGTCGTTAAAGTGA+TGG 0.558114 4_1:-59801179 Msa0560500:CDS
ATTTCCAAATCCTAATGAAG+AGG 0.559940 4_1:-59798705 Msa0560500:intron
TCTGCCAAACCAACCAAACA+AGG 0.562521 4_1:-59802423 Msa0560500:CDS
GAATGTTTGCTCTGAGAGAG+AGG 0.563359 4_1:-59797518 Msa0560500:CDS
CAACATATTTCCCTTCTGGA+TGG 0.563974 4_1:+59800156 None:intergenic
CGTGGCAAAGGTGATGAAGA+AGG 0.564116 4_1:-59797460 Msa0560500:CDS
ACAAATCAAAGAAATAAAAG+AGG 0.566379 4_1:-59799955 Msa0560500:intron
ATCCAGGATATCAATCCGAT+TGG 0.573250 4_1:+59798769 None:intergenic
GATCAAGCACTCCTGAGACC+TGG 0.576588 4_1:-59798749 Msa0560500:CDS
TTCTTCAGGTCCATCCAGAA+GGG 0.577294 4_1:-59800166 Msa0560500:intron
GATGGGCAAGAACAAAGTCT+TGG 0.577623 4_1:-59801161 Msa0560500:CDS
GAGGAGGGTACACGTGACAC+AGG 0.581105 4_1:-59797499 Msa0560500:CDS
TGAAGTTGGTGATGTTGGGA+GGG 0.586886 4_1:+59802719 None:intergenic
GCTGGAACTTCTCAACCAGT+TGG 0.589168 4_1:-59799019 Msa0560500:CDS
CGTTACGTTGCGCCTCGAGA+CGG 0.590961 4_1:+59802322 None:intergenic
GCGTCCGAAGAAGAAGAAGA+AGG 0.593155 4_1:-59802691 Msa0560500:five_prime_UTR
ATGGAATCTGGAAGTGGCAA+TGG 0.600506 4_1:-59799066 Msa0560500:CDS
CTTCTTCATCACCTTTGCCA+CGG 0.600877 4_1:+59797461 None:intergenic
GGTGAAGGAGCTGAAGCTCA+TGG 0.606891 4_1:+59802367 None:intergenic
TGTGCTGAGTATAGTATTGA+CGG 0.610288 4_1:+59802391 None:intergenic
TCTACATATGACATGATTGG+TGG 0.611571 4_1:-59799987 Msa0560500:CDS
ACTTTCATCAGATTAACCAA+TGG 0.612930 4_1:+59800026 None:intergenic
CAAACCAACCAAACAAGGGG+AGG 0.622103 4_1:-59802418 Msa0560500:CDS
CATGAACTGAAAGTGCGGTA+AGG 0.622120 4_1:+59797341 None:intergenic
GTTTGCTCTGAGAGAGAGGA+GGG 0.624635 4_1:-59797514 Msa0560500:CDS
ATCTGATCTATGGCTGCCGT+CGG 0.626800 4_1:-59802489 Msa0560500:exon
TACTGATTGTACATTCATCA+GGG 0.626895 4_1:-59799607 Msa0560500:CDS
CAAGAACAAAGTCTTGGTCA+AGG 0.631707 4_1:-59801155 Msa0560500:intron
CTGCCAAACCAACCAAACAA+GGG 0.631755 4_1:-59802422 Msa0560500:CDS
TGCCAAACCAACCAAACAAG+GGG 0.631947 4_1:-59802421 Msa0560500:CDS
AGAAGAATGAATTTAATGCG+TGG 0.632686 4_1:-59798538 Msa0560500:CDS
GTAGAAGTGAAGCATGCCGA+GGG 0.639336 4_1:-59802465 Msa0560500:CDS
TCTTGGAATAGCTCAACCGA+AGG 0.650779 4_1:-59799790 Msa0560500:intron
AGTAGAAGTGAAGCATGCCG+AGG 0.652737 4_1:-59802466 Msa0560500:CDS
AAGCACTCCTGAGACCTGGA+CGG 0.655986 4_1:-59798745 Msa0560500:CDS
ACTTCGCCAACATAAGAACC+AGG 0.656877 4_1:+59801193 None:intergenic
AAACCAACCAAACAAGGGGA+GGG 0.659041 4_1:-59802417 Msa0560500:CDS
TGTTTGCTCTGAGAGAGAGG+AGG 0.667718 4_1:-59797515 Msa0560500:CDS
ATGCTTCACTTCTACTCCGA+CGG 0.669417 4_1:+59802473 None:intergenic
TCATAATCTTAACCGTCTCG+AGG 0.679147 4_1:-59802334 Msa0560500:CDS
GAGGGTACACGTGACACAGG+AGG 0.687991 4_1:-59797496 Msa0560500:CDS
CGTAACGAGCTCAATTCTAG+GGG 0.691922 4_1:-59802306 Msa0560500:intron
GTGACCATGAACTGAAAGTG+CGG 0.706684 4_1:+59797336 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAAATTAAGAGTTTA+AGG - chr4_1:59802716-59802735 Msa0560500:five_prime_UTR 10.0%
!!! ATTTAAAATTAAGAGTTTAA+GGG - chr4_1:59802717-59802736 Msa0560500:five_prime_UTR 10.0%
!! AATTATAAATTAGGGTTATT+AGG - chr4_1:59797302-59797321 Msa0560500:three_prime_UTR 15.0%
!!! TTTTATTGTTTTAAACAACT+GGG + chr4_1:59797863-59797882 None:intergenic 15.0%
!!! TTTTTATTGTTTTAAACAAC+TGG + chr4_1:59797864-59797883 None:intergenic 15.0%
!! AAACAATAAAAAATGATTAG+AGG - chr4_1:59797872-59797891 Msa0560500:intron 15.0%
!! AAATATAACTCAAATACATT+AGG + chr4_1:59798136-59798155 None:intergenic 15.0%
!!! ATGTATTTGAGTTATATTTT+TGG - chr4_1:59798137-59798156 Msa0560500:intron 15.0%
!! TTATCCAATAAATAATATCT+AGG - chr4_1:59798303-59798322 Msa0560500:intron 15.0%
!! AGAATTTAGATTAATCAATA+CGG + chr4_1:59799465-59799484 None:intergenic 15.0%
!!! ATTTTTTTTTAATGATGCTA+TGG - chr4_1:59800941-59800960 Msa0560500:intron 15.0%
!! GAATATTATATGAAAATGAA+AGG + chr4_1:59801598-59801617 None:intergenic 15.0%
!! AATAGTATGAAATATAAAAC+TGG - chr4_1:59801849-59801868 Msa0560500:intron 15.0%
!! ATAGTATGAAATATAAAACT+GGG - chr4_1:59801850-59801869 Msa0560500:intron 15.0%
!! TTATCGTACTGAATTTATAA+AGG - chr4_1:59797239-59797258 Msa0560500:three_prime_UTR 20.0%
!!! TAAGATTATGATTCTTTTGA+CGG + chr4_1:59797562-59797581 None:intergenic 20.0%
!! AAGAATAAAAAAGAGGAATA+GGG + chr4_1:59797639-59797658 None:intergenic 20.0%
!! ATTCAATTCAATAGAGAATA+AGG - chr4_1:59797721-59797740 Msa0560500:intron 20.0%
!! TTCAATTCAATAGAGAATAA+GGG - chr4_1:59797722-59797741 Msa0560500:intron 20.0%
!! AAGATAAGAATTTGAAAACT+GGG + chr4_1:59798351-59798370 None:intergenic 20.0%
!!! ATCCAGAAAAGTTATTTTTT+GGG + chr4_1:59798624-59798643 None:intergenic 20.0%
!!! AATCCAGAAAAGTTATTTTT+TGG + chr4_1:59798625-59798644 None:intergenic 20.0%
!! TATAGCAGAATACTATTTAA+AGG - chr4_1:59799229-59799248 Msa0560500:intron 20.0%
!! TATTTAGATTAATCAATACG+AGG + chr4_1:59799323-59799342 None:intergenic 20.0%
!!! ATGTATAAAAGCATTTAAGA+AGG + chr4_1:59799378-59799397 None:intergenic 20.0%
!!! TAAATGCTTTTATACATAGT+TGG - chr4_1:59799381-59799400 Msa0560500:intron 20.0%
!! AATTTAGATTAATCAATACG+GGG + chr4_1:59799463-59799482 None:intergenic 20.0%
!! GAATTTAGATTAATCAATAC+GGG + chr4_1:59799464-59799483 None:intergenic 20.0%
!! TATAAGGATAAAAATTCCAT+AGG + chr4_1:59799569-59799588 None:intergenic 20.0%
!! CACTATTAAAGTGATTTATA+AGG + chr4_1:59799585-59799604 None:intergenic 20.0%
!! TTATTATTAATTTCATGCAC+AGG + chr4_1:59799678-59799697 None:intergenic 20.0%
!!! CTTTTATTTCTTTGATTTGT+TGG + chr4_1:59799950-59799969 None:intergenic 20.0%
!! ACAAATCAAAGAAATAAAAG+AGG - chr4_1:59799950-59799969 Msa0560500:intron 20.0%
!! TTCATTTACATCAAATTTAC+AGG - chr4_1:59800052-59800071 Msa0560500:CDS 20.0%
!! AAAAATTACCTTGATCTTAT+TGG + chr4_1:59800927-59800946 None:intergenic 20.0%
!! TAAATATAAAACTGTAACAG+AGG - chr4_1:59801016-59801035 Msa0560500:intron 20.0%
!! AAATATAAAACTGTAACAGA+GGG - chr4_1:59801017-59801036 Msa0560500:intron 20.0%
!!! ATATAGTTGTTTTCAGTAAA+TGG + chr4_1:59801307-59801326 None:intergenic 20.0%
!! TTAAATTCATTCTTCTTGAA+TGG + chr4_1:59801363-59801382 None:intergenic 20.0%
!!! ATCATCTAAAATATTGTCAT+CGG - chr4_1:59801498-59801517 Msa0560500:intron 20.0%
!!! CATAATTTTATCTGAATAGT+AGG + chr4_1:59802192-59802211 None:intergenic 20.0%
!!! TGATTTGTATTTTATGTTTC+TGG - chr4_1:59802506-59802525 Msa0560500:intron 20.0%
!! AAACTAAAGAGAGTAATAAA+AGG + chr4_1:59802664-59802683 None:intergenic 20.0%
!! ACTTGAGTCTATAAAATTAA+AGG - chr4_1:59802742-59802761 Msa0560500:five_prime_UTR 20.0%
!!! ATTTTGGTAGAATTGAATTG+GGG + chr4_1:59797160-59797179 None:intergenic 25.0%
!!! GATTTTGGTAGAATTGAATT+GGG + chr4_1:59797161-59797180 None:intergenic 25.0%
! TTGGGGGTTAATTATAAATT+AGG - chr4_1:59797293-59797312 Msa0560500:three_prime_UTR 25.0%
! TGGGGGTTAATTATAAATTA+GGG - chr4_1:59797294-59797313 Msa0560500:three_prime_UTR 25.0%
!! TGAATCTGATTTGTAGAATT+AGG - chr4_1:59797334-59797353 Msa0560500:three_prime_UTR 25.0%
!! GAATCTGATTTGTAGAATTA+GGG - chr4_1:59797335-59797354 Msa0560500:three_prime_UTR 25.0%
!!! TATTTTACAGTAGAGTTGAT+CGG - chr4_1:59797393-59797412 Msa0560500:three_prime_UTR 25.0%
! CAAGAATAAAAAAGAGGAAT+AGG + chr4_1:59797640-59797659 None:intergenic 25.0%
! GCAATTCAAGAATAAAAAAG+AGG + chr4_1:59797646-59797665 None:intergenic 25.0%
! TCAATTCAATAGAGAATAAG+GGG - chr4_1:59797723-59797742 Msa0560500:intron 25.0%
!!! AAACTTTGGTTTGTTTATGT+GGG - chr4_1:59798015-59798034 Msa0560500:intron 25.0%
! CACACCTAGATATTATTTAT+TGG + chr4_1:59798310-59798329 None:intergenic 25.0%
! GAAGATAAGAATTTGAAAAC+TGG + chr4_1:59798352-59798371 None:intergenic 25.0%
! TCTATCACATCAAACTTATT+AGG - chr4_1:59798370-59798389 Msa0560500:intron 25.0%
!!! ATTTTCTTTTGCTGTAAGAT+CGG - chr4_1:59798411-59798430 Msa0560500:intron 25.0%
! AAATGATAGTAAATCAGTGA+AGG + chr4_1:59798520-59798539 None:intergenic 25.0%
!!! TCCAGAAAAGTTATTTTTTG+GGG + chr4_1:59798623-59798642 None:intergenic 25.0%
! ATATATAACAGTACAGATAG+CGG + chr4_1:59798845-59798864 None:intergenic 25.0%
! GAAGCATAGATCAATAAAAA+TGG + chr4_1:59799296-59799315 None:intergenic 25.0%
! TAAATACTCATGTACATTGT+TGG - chr4_1:59799337-59799356 Msa0560500:intron 25.0%
! AGTATTCAGACTAATCAATA+CGG + chr4_1:59799428-59799447 None:intergenic 25.0%
! ACATAAATCTTCACTTCTTA+AGG + chr4_1:59799519-59799538 None:intergenic 25.0%
!!! TTGTGAGACATTGTTTTTTT+AGG + chr4_1:59800668-59800687 None:intergenic 25.0%
! AGTAGTGTTACATATCATAT+TGG + chr4_1:59800750-59800769 None:intergenic 25.0%
! GAAGAGAAAATTGCAATTAT+AGG - chr4_1:59801101-59801120 Msa0560500:intron 25.0%
!!! ATTGCAATTATAGGTTTTGA+TGG - chr4_1:59801110-59801129 Msa0560500:intron 25.0%
! CTCAATACAATCATATCAAA+GGG + chr4_1:59801249-59801268 None:intergenic 25.0%
! TCTCAATACAATCATATCAA+AGG + chr4_1:59801250-59801269 None:intergenic 25.0%
! TATATGTATATGTATGCTGA+AGG + chr4_1:59801284-59801303 None:intergenic 25.0%
!!! AATGGATTTTCAAGATATCT+CGG + chr4_1:59801345-59801364 None:intergenic 25.0%
! AAACAAAGTGATTGCATAAT+GGG + chr4_1:59801620-59801639 None:intergenic 25.0%
!! AATTTTACAATGCGAAACAA+AGG - chr4_1:59801663-59801682 Msa0560500:intron 25.0%
! CAACAATAACATGTTAATGT+TGG + chr4_1:59801701-59801720 None:intergenic 25.0%
! CAACAATAACATGTTAATGT+TGG + chr4_1:59801701-59801720 None:intergenic 25.0%
! AATAGTTGATTGGATATTGT+TGG - chr4_1:59801947-59801966 Msa0560500:intron 25.0%
! ATAGTTGATTGGATATTGTT+GGG - chr4_1:59801948-59801967 Msa0560500:intron 25.0%
! CTATTCAGATAAAATTATGC+TGG - chr4_1:59802193-59802212 Msa0560500:intron 25.0%
!! TTAACACATTATTTCAAGTG+TGG - chr4_1:59802306-59802325 Msa0560500:intron 25.0%
!!! TCTGTGCTTTTATTTTATGT+AGG - chr4_1:59802346-59802365 Msa0560500:CDS 25.0%
!! CGATTTTGGTAGAATTGAAT+TGG + chr4_1:59797162-59797181 None:intergenic 30.0%
AAATCCTTCTTCTTCTTCTT+CGG + chr4_1:59797221-59797240 None:intergenic 30.0%
!!! TCGCTCTTATTTTGGAATTT+GGG - chr4_1:59797275-59797294 Msa0560500:three_prime_UTR 30.0%
ATAAACGGAATCAAAATCTG+AGG + chr4_1:59797769-59797788 None:intergenic 30.0%
AAAATGATTAGAGGACATTG+TGG - chr4_1:59797881-59797900 Msa0560500:intron 30.0%
AATATGGAATTCAACAAGGT+TGG - chr4_1:59797928-59797947 Msa0560500:intron 30.0%
CTCAATTTCTCCAATAAGAT+TGG + chr4_1:59797968-59797987 None:intergenic 30.0%
!! CAAACTTTGGTTTGTTTATG+TGG - chr4_1:59798014-59798033 Msa0560500:intron 30.0%
CTATATATACACACAAAACC+AGG - chr4_1:59798079-59798098 Msa0560500:intron 30.0%
AAACAAACAAAAGCTTATCC+TGG + chr4_1:59798100-59798119 None:intergenic 30.0%
ATAAGAATTTGAAAACTGGG+AGG + chr4_1:59798348-59798367 None:intergenic 30.0%
TCACATCAAACTTATTAGGA+AGG - chr4_1:59798374-59798393 Msa0560500:intron 30.0%
!!! CCAGAAAAGTTATTTTTTGG+GGG + chr4_1:59798622-59798641 None:intergenic 30.0%
TCCAAATTGCAATTGAATCA+GGG + chr4_1:59798651-59798670 None:intergenic 30.0%
AAAAACAAATTGAGCCATCA+TGG + chr4_1:59798817-59798836 None:intergenic 30.0%
TTGTTAAATAGCAGCTATAG+TGG - chr4_1:59798892-59798911 Msa0560500:intron 30.0%
AGTGTATTATGCAACAATAG+TGG + chr4_1:59798954-59798973 None:intergenic 30.0%
TCATTATTCATGTCTCACAT+TGG - chr4_1:59799122-59799141 Msa0560500:CDS 30.0%
TATTCAGACTAATCAATACG+GGG + chr4_1:59799426-59799445 None:intergenic 30.0%
GTATTCAGACTAATCAATAC+GGG + chr4_1:59799427-59799446 None:intergenic 30.0%
! CCAAGATTCTGTACTATTTT+AGG + chr4_1:59799542-59799561 None:intergenic 30.0%
CCTAAAATAGTACAGAATCT+TGG - chr4_1:59799539-59799558 Msa0560500:CDS 30.0%
AAATAGTACAGAATCTTGGT+TGG - chr4_1:59799543-59799562 Msa0560500:CDS 30.0%
GAACTCATGACTATATCTAA+TGG - chr4_1:59799639-59799658 Msa0560500:CDS 30.0%
TTATTAATTTCATGCACAGG+TGG + chr4_1:59799675-59799694 None:intergenic 30.0%
GAACAAAAAATCCTAGACAA+AGG - chr4_1:59799698-59799717 Msa0560500:intron 30.0%
!! AGTTTCCATTACTTTTCTTC+AGG - chr4_1:59799725-59799744 Msa0560500:intron 30.0%
ACTTTCATCAGATTAACCAA+TGG + chr4_1:59799882-59799901 None:intergenic 30.0%
ATCATGTCATATGTAGAATC+AGG + chr4_1:59799915-59799934 None:intergenic 30.0%
GATTCTACATATGACATGAT+TGG - chr4_1:59799915-59799934 Msa0560500:intron 30.0%
AAAAGCTCAGGATGTTTAAT+TGG + chr4_1:59800089-59800108 None:intergenic 30.0%
AACTCATGCAATATTACCTT+CGG + chr4_1:59800134-59800153 None:intergenic 30.0%
! TACTCTATTTTACGTATCAC+AGG - chr4_1:59800211-59800230 Msa0560500:intron 30.0%
! ACTCTATTTTACGTATCACA+GGG - chr4_1:59800212-59800231 Msa0560500:intron 30.0%
! ATACTGATTGTACATTCATC+AGG - chr4_1:59800297-59800316 Msa0560500:intron 30.0%
! TACTGATTGTACATTCATCA+GGG - chr4_1:59800298-59800317 Msa0560500:intron 30.0%
! GAACTTGTTCAGAAATACAT+TGG - chr4_1:59800332-59800351 Msa0560500:intron 30.0%
ATAATGAATGGAGTAGGTTT+AGG + chr4_1:59800413-59800432 None:intergenic 30.0%
TCGCATCAACATAAATAAGA+GGG - chr4_1:59800436-59800455 Msa0560500:intron 30.0%
! ACCTTTGAAAAGACAACAAT+GGG - chr4_1:59800634-59800653 Msa0560500:intron 30.0%
ACATTTACTTCAAATGAGCA+TGG + chr4_1:59800708-59800727 None:intergenic 30.0%
! TTTGAAGTAAATGTGTTCTG+AGG - chr4_1:59800714-59800733 Msa0560500:intron 30.0%
ATTAGAGGGAATTCCAAAAT+TGG - chr4_1:59800970-59800989 Msa0560500:intron 30.0%
GTGAACGTATATCTCAAATT+AGG + chr4_1:59801064-59801083 None:intergenic 30.0%
GATATACGTTCACAATTTAG+AGG - chr4_1:59801071-59801090 Msa0560500:intron 30.0%
ATTTCCAAATCCTAATGAAG+AGG - chr4_1:59801200-59801219 Msa0560500:CDS 30.0%
AGAAGAATGAATTTAATGCG+TGG - chr4_1:59801367-59801386 Msa0560500:intron 30.0%
ATACCTTAATTGCTTCAACA+AGG + chr4_1:59801524-59801543 None:intergenic 30.0%
GCACTTATTGAGATAAACAA+CGG - chr4_1:59801569-59801588 Msa0560500:intron 30.0%
CACTTATTGAGATAAACAAC+GGG - chr4_1:59801570-59801589 Msa0560500:intron 30.0%
CAAACAAAGTGATTGCATAA+TGG + chr4_1:59801621-59801640 None:intergenic 30.0%
! TATGCAATCACTTTGTTTGA+TGG - chr4_1:59801622-59801641 Msa0560500:intron 30.0%
! ATGCAATCACTTTGTTTGAT+GGG - chr4_1:59801623-59801642 Msa0560500:intron 30.0%
! GTTGTCTAAGATATTATCTC+AGG - chr4_1:59801720-59801739 Msa0560500:intron 30.0%
! GTTGTCTAAGATATTATCTC+AGG - chr4_1:59801720-59801739 Msa0560500:intron 30.0%
CAGTTATAAACACTTCATAG+TGG - chr4_1:59802032-59802051 Msa0560500:intron 30.0%
AATAGTAGGATTTGTGAAAG+GGG + chr4_1:59802178-59802197 None:intergenic 30.0%
GAATAGTAGGATTTGTGAAA+GGG + chr4_1:59802179-59802198 None:intergenic 30.0%
TGAATAGTAGGATTTGTGAA+AGG + chr4_1:59802180-59802199 None:intergenic 30.0%
ATTATGCTGGAATGTCATAA+TGG - chr4_1:59802206-59802225 Msa0560500:intron 30.0%
!!! CTCGCTCTTATTTTGGAATT+TGG - chr4_1:59797274-59797293 Msa0560500:three_prime_UTR 35.0%
!!! CGCTCTTATTTTGGAATTTG+GGG - chr4_1:59797276-59797295 Msa0560500:three_prime_UTR 35.0%
!!! GCTCTTATTTTGGAATTTGG+GGG - chr4_1:59797277-59797296 Msa0560500:three_prime_UTR 35.0%
! TGTGCTGAGTATAGTATTGA+CGG + chr4_1:59797517-59797536 None:intergenic 35.0%
! TATGATTCTTTTGACGGTGA+AGG + chr4_1:59797556-59797575 None:intergenic 35.0%
CAATAGAGAATAAGGGGATA+TGG - chr4_1:59797729-59797748 Msa0560500:intron 35.0%
!! GTTGATTTGTATCACCCTTT+GGG - chr4_1:59797801-59797820 Msa0560500:intron 35.0%
!! TTGATTTGTATCACCCTTTG+GGG - chr4_1:59797802-59797821 Msa0560500:intron 35.0%
TTTAAACAACTGGGTGTAGA+TGG + chr4_1:59797854-59797873 None:intergenic 35.0%
GGGTAATATGGAATTCAACA+AGG - chr4_1:59797924-59797943 Msa0560500:intron 35.0%
TAGTCACAGACCAATCTTAT+TGG - chr4_1:59797955-59797974 Msa0560500:intron 35.0%
!! TTGGTTTGTTTATGTGGGTT+TGG - chr4_1:59798020-59798039 Msa0560500:intron 35.0%
!! TGGTTTGTTTATGTGGGTTT+GGG - chr4_1:59798021-59798040 Msa0560500:intron 35.0%
GACAAATATTGTCCTTTGAG+CGG - chr4_1:59798175-59798194 Msa0560500:intron 35.0%
! CCCCCAAAAAATAACTTTTC+TGG - chr4_1:59798619-59798638 Msa0560500:intron 35.0%
TCCCTGATTCAATTGCAATT+TGG - chr4_1:59798647-59798666 Msa0560500:intron 35.0%
GTCCAAATTGCAATTGAATC+AGG + chr4_1:59798652-59798671 None:intergenic 35.0%
ACTATACCACTATAGTGTAG+CGG - chr4_1:59798916-59798935 Msa0560500:intron 35.0%
!! GAAAAGTTTTGACAAGACCA+CGG + chr4_1:59799202-59799221 None:intergenic 35.0%
TTATGTATCTTCGAGTCCAT+GGG - chr4_1:59799256-59799275 Msa0560500:intron 35.0%
TCATGACTATATCTAATGGC+AGG - chr4_1:59799643-59799662 Msa0560500:CDS 35.0%
ATGGACCTGAAGAAAAGTAA+TGG + chr4_1:59799733-59799752 None:intergenic 35.0%
TCAACAACATATTTCCCTTC+TGG + chr4_1:59799756-59799775 None:intergenic 35.0%
TCTACATATGACATGATTGG+TGG - chr4_1:59799918-59799937 Msa0560500:intron 35.0%
! AACAATGTTTTTCCTGTACC+AGG + chr4_1:59800257-59800276 None:intergenic 35.0%
TGGTACAGGAAAAACATTGT+TGG - chr4_1:59800256-59800275 Msa0560500:intron 35.0%
! AGGAAAAACATTGTTGGCTA+GGG - chr4_1:59800262-59800281 Msa0560500:intron 35.0%
GTTCAGAAATACATTGGAGA+AGG - chr4_1:59800338-59800357 Msa0560500:intron 35.0%
!! AGAAGGTTCTAGAATGGTTA+GGG - chr4_1:59800355-59800374 Msa0560500:intron 35.0%
! GGTTAGGGAACTTTTTGTTA+TGG - chr4_1:59800370-59800389 Msa0560500:intron 35.0%
TTGATGCGACACATAATGAA+TGG + chr4_1:59800425-59800444 None:intergenic 35.0%
GTCGCATCAACATAAATAAG+AGG - chr4_1:59800435-59800454 Msa0560500:intron 35.0%
ATGGTCGAAGATATATCTGA+TGG - chr4_1:59800494-59800513 Msa0560500:intron 35.0%
TGGTCGAAGATATATCTGAT+GGG - chr4_1:59800495-59800514 Msa0560500:intron 35.0%
TACAACTTCAGCAGTTACTA+GGG + chr4_1:59800554-59800573 None:intergenic 35.0%
ATACAACTTCAGCAGTTACT+AGG + chr4_1:59800555-59800574 None:intergenic 35.0%
! TCTTTTCAAAGGTCAGTTAG+TGG + chr4_1:59800627-59800646 None:intergenic 35.0%
! GACCTTTGAAAAGACAACAA+TGG - chr4_1:59800633-59800652 Msa0560500:intron 35.0%
! TAACACTACTCCTTTTCACA+GGG - chr4_1:59800760-59800779 Msa0560500:intron 35.0%
TGCTCCATCAATTATCTTCA+TGG - chr4_1:59800787-59800806 Msa0560500:intron 35.0%
TCGTCCATGAAGATAATTGA+TGG + chr4_1:59800794-59800813 None:intergenic 35.0%
ATGGACGAAATTGACAGTAT+TGG - chr4_1:59800806-59800825 Msa0560500:intron 35.0%
TGAAGCTTCCAATAAGATCA+AGG - chr4_1:59800916-59800935 Msa0560500:intron 35.0%
! ATGCTATGGTAGTGTATTAG+AGG - chr4_1:59800955-59800974 Msa0560500:intron 35.0%
! TGCTATGGTAGTGTATTAGA+GGG - chr4_1:59800956-59800975 Msa0560500:intron 35.0%
! AACACACATGTTGCCAATTT+TGG + chr4_1:59800986-59801005 None:intergenic 35.0%
CAAACCTCTTCATTAGGATT+TGG + chr4_1:59801207-59801226 None:intergenic 35.0%
AAGATGCAAACCTCTTCATT+AGG + chr4_1:59801213-59801232 None:intergenic 35.0%
AAGATTGCTGAGAAGATGAA+TGG - chr4_1:59801403-59801422 Msa0560500:intron 35.0%
TTAGATGATAATAGAGCAGC+AGG + chr4_1:59801487-59801506 None:intergenic 35.0%
! TGCAATCACTTTGTTTGATG+GGG - chr4_1:59801624-59801643 Msa0560500:intron 35.0%
AGATATTATCTCAGGTCATG+AGG - chr4_1:59801728-59801747 Msa0560500:intron 35.0%
AGATATTATCTCAGGTCATG+AGG - chr4_1:59801728-59801747 Msa0560500:intron 35.0%
TTCATTTCAGAGTGAAGAAC+TGG - chr4_1:59801885-59801904 Msa0560500:intron 35.0%
TCATTTCAGAGTGAAGAACT+GGG - chr4_1:59801886-59801905 Msa0560500:intron 35.0%
AGAACTGGGTGTAATAGTAA+AGG - chr4_1:59801900-59801919 Msa0560500:intron 35.0%
GAACTGGGTGTAATAGTAAA+GGG - chr4_1:59801901-59801920 Msa0560500:intron 35.0%
AACTGGGTGTAATAGTAAAG+GGG - chr4_1:59801902-59801921 Msa0560500:intron 35.0%
TAGTAAAGGGGAACTAAACA+TGG - chr4_1:59801914-59801933 Msa0560500:intron 35.0%
AGTAAAGGGGAACTAAACAT+GGG - chr4_1:59801915-59801934 Msa0560500:intron 35.0%
! GTGGGTTACTAATAGTTGAT+TGG - chr4_1:59801937-59801956 Msa0560500:intron 35.0%
ATAAACACTTCATAGTGGTG+AGG - chr4_1:59802037-59802056 Msa0560500:intron 35.0%
TAAACACTTCATAGTGGTGA+GGG - chr4_1:59802038-59802057 Msa0560500:intron 35.0%
! CAAAGTTTGGGTTTATTCCA+TGG - chr4_1:59802096-59802115 Msa0560500:intron 35.0%
GCTATGAATTTACGTGTTCA+TGG - chr4_1:59802241-59802260 Msa0560500:intron 35.0%
CACAGAAAATTGAGCATACT+AGG + chr4_1:59802332-59802351 None:intergenic 35.0%
! CCTCAATGACATGTTTTTCT+CGG + chr4_1:59802474-59802493 None:intergenic 35.0%
AAGGTACAACTGAACAAGAA+AGG + chr4_1:59802645-59802664 None:intergenic 35.0%
!! ATGGTGAAGTTGGTGATGTT+GGG + chr4_1:59797193-59797212 None:intergenic 40.0%
!! TCTCTCTCTCGCTCTTATTT+TGG - chr4_1:59797267-59797286 Msa0560500:three_prime_UTR 40.0%
AGTTGATCGGATCTGATCTA+TGG - chr4_1:59797406-59797425 Msa0560500:exon 40.0%
TCATAATCTTAACCGTCTCG+AGG - chr4_1:59797571-59797590 Msa0560500:intron 40.0%
AACGTAACGAGCTCAATTCT+AGG - chr4_1:59797597-59797616 Msa0560500:intron 40.0%
ACGTAACGAGCTCAATTCTA+GGG - chr4_1:59797598-59797617 Msa0560500:intron 40.0%
ATTCCGTTTATTTACCCCTC+TGG - chr4_1:59797778-59797797 Msa0560500:intron 40.0%
TTCCGTTTATTTACCCCTCT+GGG - chr4_1:59797779-59797798 Msa0560500:intron 40.0%
AACCCAGAGGGGTAAATAAA+CGG + chr4_1:59797784-59797803 None:intergenic 40.0%
TGATACAAATCAACCCAGAG+GGG + chr4_1:59797795-59797814 None:intergenic 40.0%
GTGATACAAATCAACCCAGA+GGG + chr4_1:59797796-59797815 None:intergenic 40.0%
!! GGTTGATTTGTATCACCCTT+TGG - chr4_1:59797800-59797819 Msa0560500:intron 40.0%
ACACCTTAGATAACCCCAAA+GGG + chr4_1:59797818-59797837 None:intergenic 40.0%
GGAGAAATTGAGAGTAGTGA+AGG - chr4_1:59797976-59797995 Msa0560500:intron 40.0%
TGAGAGTAGTGAAGGTGATT+TGG - chr4_1:59797984-59798003 Msa0560500:intron 40.0%
ATTTGGTCACTGGCAAACTT+TGG - chr4_1:59798001-59798020 Msa0560500:intron 40.0%
AAATATTGTCCTTTGAGCGG+TGG - chr4_1:59798178-59798197 Msa0560500:intron 40.0%
TTTGAAAAACCACCGCTCAA+AGG + chr4_1:59798190-59798209 None:intergenic 40.0%
!! CGGTGGTTTTTCAAAGTAGT+AGG - chr4_1:59798195-59798214 Msa0560500:intron 40.0%
CAGATACTGACAACATCAAC+TGG - chr4_1:59798230-59798249 Msa0560500:intron 40.0%
ATATCTAGGTGTGAGCTGTA+TGG - chr4_1:59798317-59798336 Msa0560500:intron 40.0%
AGAATTTGAAAACTGGGAGG+AGG + chr4_1:59798345-59798364 None:intergenic 40.0%
!! TCTTTTGCTGTAAGATCGGT+TGG - chr4_1:59798415-59798434 Msa0560500:intron 40.0%
!! CTTTTGCTGTAAGATCGGTT+GGG - chr4_1:59798416-59798435 Msa0560500:intron 40.0%
CAATTGCAATTTGGACAGTG+AGG - chr4_1:59798656-59798675 Msa0560500:intron 40.0%
CAAGAACAAAGTCTTGGTCA+AGG - chr4_1:59798750-59798769 Msa0560500:CDS 40.0%
AACAAATTGAGCCATCATGG+TGG + chr4_1:59798814-59798833 None:intergenic 40.0%
! TATTTTACGCAGTTCGCGAT+TGG - chr4_1:59799052-59799071 Msa0560500:CDS 40.0%
CTCTAGATCATTAATTGCCG+TGG - chr4_1:59799182-59799201 Msa0560500:intron 40.0%
CTTATGTATCTTCGAGTCCA+TGG - chr4_1:59799255-59799274 Msa0560500:intron 40.0%
GGATGAAACAATAAAGCCCA+TGG + chr4_1:59799275-59799294 None:intergenic 40.0%
ACTAACAGGAAACAGCAGAA+TGG + chr4_1:59799616-59799635 None:intergenic 40.0%
GTCATGAGTTCATGACTAAC+AGG + chr4_1:59799630-59799649 None:intergenic 40.0%
CAACATATTTCCCTTCTGGA+TGG + chr4_1:59799752-59799771 None:intergenic 40.0%
! TCCAAGCAAAGTTGATCCAT+TGG - chr4_1:59799863-59799882 Msa0560500:intron 40.0%
ACCAATGGATCAACTTTGCT+TGG + chr4_1:59799867-59799886 None:intergenic 40.0%
CCAAGACTTTCAAAAAGCTC+AGG + chr4_1:59800101-59800120 None:intergenic 40.0%
!! CCTGAGCTTTTTGAAAGTCT+TGG - chr4_1:59800098-59800117 Msa0560500:CDS 40.0%
! AATGTTTTTCCTGTACCAGG+TGG + chr4_1:59800254-59800273 None:intergenic 40.0%
! CAGGAAAAACATTGTTGGCT+AGG - chr4_1:59800261-59800280 Msa0560500:intron 40.0%
!! CATTGGAGAAGGTTCTAGAA+TGG - chr4_1:59800349-59800368 Msa0560500:intron 40.0%
!! GAGAAGGTTCTAGAATGGTT+AGG - chr4_1:59800354-59800373 Msa0560500:intron 40.0%
TTTAGGTAAGAGGTCAAACC+TGG + chr4_1:59800396-59800415 None:intergenic 40.0%
ATGGAGTAGGTTTAGGTAAG+AGG + chr4_1:59800406-59800425 None:intergenic 40.0%
CGACACATAATGAATGGAGT+AGG + chr4_1:59800419-59800438 None:intergenic 40.0%
! TGACGTTTTCTTGACTTCCA+TGG - chr4_1:59800466-59800485 Msa0560500:intron 40.0%
! CTTGACTTCCATGGCTTTTA+TGG - chr4_1:59800475-59800494 Msa0560500:intron 40.0%
ATCTTCGACCATAAAAGCCA+TGG + chr4_1:59800486-59800505 None:intergenic 40.0%
GGCACAAGTAAACTCAACTT+AGG - chr4_1:59800516-59800535 Msa0560500:intron 40.0%
! GCCCATTGTTGTCTTTTCAA+AGG + chr4_1:59800638-59800657 None:intergenic 40.0%
! GTAACACTACTCCTTTTCAC+AGG - chr4_1:59800759-59800778 Msa0560500:intron 40.0%
AAGCTTCAAATCCATCCAAC+TGG + chr4_1:59800904-59800923 None:intergenic 40.0%
ATCCAGGATATCAATCCGAT+TGG + chr4_1:59801139-59801158 None:intergenic 40.0%
! GCAATCACTTTGTTTGATGG+GGG - chr4_1:59801625-59801644 Msa0560500:intron 40.0%
! CAATCACTTTGTTTGATGGG+GGG - chr4_1:59801626-59801645 Msa0560500:intron 40.0%
GATTGGATATTGTTGGGTAG+TGG - chr4_1:59801954-59801973 Msa0560500:intron 40.0%
!! GGTAGTGGAGAACTAAACAT+GGG - chr4_1:59801969-59801988 Msa0560500:intron 40.0%
! GTGGGTTACTAGTTACAGTT+TGG - chr4_1:59801991-59802010 Msa0560500:intron 40.0%
!! CTAGTTACAGTTTGGTCTTG+CGG - chr4_1:59801999-59802018 Msa0560500:intron 40.0%
!! TAGTTACAGTTTGGTCTTGC+GGG - chr4_1:59802000-59802019 Msa0560500:intron 40.0%
TTGTCGTCTGGATCAAAGTT+TGG - chr4_1:59802083-59802102 Msa0560500:intron 40.0%
TGTCGTCTGGATCAAAGTTT+GGG - chr4_1:59802084-59802103 Msa0560500:intron 40.0%
TTGGGTTTATTCCATGGTGT+TGG - chr4_1:59802102-59802121 Msa0560500:intron 40.0%
CCGAGAAAAACATGTCATTG+AGG - chr4_1:59802471-59802490 Msa0560500:CDS 40.0%
ACATGTCATTGAGGAAGTTG+TGG - chr4_1:59802480-59802499 Msa0560500:CDS 40.0%
!! TGAAGTTGGTGATGTTGGGA+GGG + chr4_1:59797189-59797208 None:intergenic 45.0%
!! GATGGTGAAGTTGGTGATGT+TGG + chr4_1:59797194-59797213 None:intergenic 45.0%
ATGCTTCACTTCTACTCCGA+CGG + chr4_1:59797435-59797454 None:intergenic 45.0%
TCTGCCAAACCAACCAAACA+AGG - chr4_1:59797482-59797501 Msa0560500:CDS 45.0%
CTGCCAAACCAACCAAACAA+GGG - chr4_1:59797483-59797502 Msa0560500:CDS 45.0%
TGCCAAACCAACCAAACAAG+GGG - chr4_1:59797484-59797503 Msa0560500:CDS 45.0%
AAACCAACCAAACAAGGGGA+GGG - chr4_1:59797488-59797507 Msa0560500:CDS 45.0%
CGTAACGAGCTCAATTCTAG+GGG - chr4_1:59797599-59797618 Msa0560500:intron 45.0%
GGTGATACAAATCAACCCAG+AGG + chr4_1:59797797-59797816 None:intergenic 45.0%
!! TCACCCTTTGGGGTTATCTA+AGG - chr4_1:59797812-59797831 Msa0560500:intron 45.0%
GACACCTTAGATAACCCCAA+AGG + chr4_1:59797819-59797838 None:intergenic 45.0%
!! GTTATCTAAGGTGTCGCAGA+TGG - chr4_1:59797824-59797843 Msa0560500:intron 45.0%
CTGGTTGGGTTTGGGTAATA+TGG - chr4_1:59797912-59797931 Msa0560500:intron 45.0%
!! AGTGAAGGTGATTTGGTCAC+TGG - chr4_1:59797991-59798010 Msa0560500:intron 45.0%
! GGTTTGGGTCTTTCTAGCAT+GGG - chr4_1:59798036-59798055 Msa0560500:intron 45.0%
! GTTTGGGTCTTTCTAGCATG+GGG - chr4_1:59798037-59798056 Msa0560500:intron 45.0%
TTTGGACAGTGAGGATGCTT+CGG - chr4_1:59798665-59798684 Msa0560500:intron 45.0%
ACTTCGCCAACATAAGAACC+AGG + chr4_1:59798715-59798734 None:intergenic 45.0%
TGGCGAAGTCGTTAAAGTGA+TGG - chr4_1:59798726-59798745 Msa0560500:CDS 45.0%
GGCGAAGTCGTTAAAGTGAT+GGG - chr4_1:59798727-59798746 Msa0560500:CDS 45.0%
GATGGGCAAGAACAAAGTCT+TGG - chr4_1:59798744-59798763 Msa0560500:CDS 45.0%
CAAATGCCGCTACACTATAG+TGG + chr4_1:59798925-59798944 None:intergenic 45.0%
CACTATAGTGTAGCGGCATT+TGG - chr4_1:59798923-59798942 Msa0560500:intron 45.0%
TTGTCCAATAGCCGCTATAG+TGG - chr4_1:59798989-59799008 Msa0560500:intron 45.0%
GTGCTATAGCACCACTATAG+CGG + chr4_1:59799003-59799022 None:intergenic 45.0%
! GCTATAGCACTTTTGCGTAG+CGG - chr4_1:59799013-59799032 Msa0560500:CDS 45.0%
! CGTAGCGGAATTTCAGCAAT+CGG - chr4_1:59799028-59799047 Msa0560500:CDS 45.0%
!! ACAGAATCTTGGTTGGCCTA+TGG - chr4_1:59799550-59799569 Msa0560500:CDS 45.0%
GGAAACTCAGTCCTTTGTCT+AGG + chr4_1:59799712-59799731 None:intergenic 45.0%
TTTCTTCAGGTCCATCCAGA+AGG - chr4_1:59799738-59799757 Msa0560500:intron 45.0%
TTCTTCAGGTCCATCCAGAA+GGG - chr4_1:59799739-59799758 Msa0560500:intron 45.0%
CGAAGAGCAACTCTAGTAGA+TGG + chr4_1:59799813-59799832 None:intergenic 45.0%
TCTTGGAATAGCTCAACCGA+AGG - chr4_1:59800115-59800134 Msa0560500:CDS 45.0%
! TGTACATTCATCAGGGTGTC+TGG - chr4_1:59800305-59800324 Msa0560500:intron 45.0%
!! GGGAACTTTTTGTTATGGCC+AGG - chr4_1:59800375-59800394 Msa0560500:intron 45.0%
! CAGTATTGGATCTGCTCGTA+TGG - chr4_1:59800820-59800839 Msa0560500:intron 45.0%
ATGGAATCTGGAAGTGGCAA+TGG - chr4_1:59800839-59800858 Msa0560500:intron 45.0%
GAACTTCTCAACCAGTTGGA+TGG - chr4_1:59800890-59800909 Msa0560500:intron 45.0%
!! AGGTTTTGATGGCCACCAAT+CGG - chr4_1:59801121-59801140 Msa0560500:intron 45.0%
CAGGATATCAATCCGATTGG+TGG + chr4_1:59801136-59801155 None:intergenic 45.0%
CACCAATCGGATTGATATCC+TGG - chr4_1:59801134-59801153 Msa0560500:intron 45.0%
! GAGAAGATGAATGGAGCATC+TGG - chr4_1:59801412-59801431 Msa0560500:intron 45.0%
GATGATAATAGAGCAGCAGG+AGG + chr4_1:59801484-59801503 None:intergenic 45.0%
!! CGGCCTTGTTGAAGCAATTA+AGG - chr4_1:59801518-59801537 Msa0560500:intron 45.0%
! ACTTTGTTTGATGGGGGGTA+AGG - chr4_1:59801631-59801650 Msa0560500:intron 45.0%
AAAGGGGAACTAAACATGGG+TGG - chr4_1:59801918-59801937 Msa0560500:intron 45.0%
AAGGGGAACTAAACATGGGT+GGG - chr4_1:59801919-59801938 Msa0560500:intron 45.0%
!! GGGTAGTGGAGAACTAAACA+TGG - chr4_1:59801968-59801987 Msa0560500:intron 45.0%
AGTGGAGAACTAAACATGGG+TGG - chr4_1:59801972-59801991 Msa0560500:intron 45.0%
GTGGAGAACTAAACATGGGT+GGG - chr4_1:59801973-59801992 Msa0560500:intron 45.0%
!! AGTTACAGTTTGGTCTTGCG+GGG - chr4_1:59802001-59802020 Msa0560500:intron 45.0%
ATTTGGCAAACGTTGTCGTC+TGG - chr4_1:59802071-59802090 Msa0560500:intron 45.0%
TGTCAATGTCACCAACACCA+TGG + chr4_1:59802116-59802135 None:intergenic 45.0%
!! GAATGTTTGCTCTGAGAGAG+AGG - chr4_1:59802387-59802406 Msa0560500:CDS 45.0%
!! GACACAGGAGGATTTTGAGA+TGG - chr4_1:59802421-59802440 Msa0560500:CDS 45.0%
CTTCTTCATCACCTTTGCCA+CGG + chr4_1:59802447-59802466 None:intergenic 45.0%
! CATGAACTGAAAGTGCGGTA+AGG + chr4_1:59802567-59802586 None:intergenic 45.0%
CTTACCGCACTTTCAGTTCA+TGG - chr4_1:59802565-59802584 Msa0560500:intron 45.0%
GTGACCATGAACTGAAAGTG+CGG + chr4_1:59802572-59802591 None:intergenic 45.0%
CTTTCAGTTCATGGTCACTC+TGG - chr4_1:59802574-59802593 Msa0560500:intron 45.0%
!!! GTTGGGAGGGTACTCGATTT+TGG + chr4_1:59797176-59797195 None:intergenic 50.0%
!! GTGAAGTTGGTGATGTTGGG+AGG + chr4_1:59797190-59797209 None:intergenic 50.0%
TTCTTCTTCTTCGGACGCGA+TGG + chr4_1:59797212-59797231 None:intergenic 50.0%
GCGTCCGAAGAAGAAGAAGA+AGG - chr4_1:59797214-59797233 Msa0560500:three_prime_UTR 50.0%
ATCTGATCTATGGCTGCCGT+CGG - chr4_1:59797416-59797435 Msa0560500:exon 50.0%
AGTAGAAGTGAAGCATGCCG+AGG - chr4_1:59797439-59797458 Msa0560500:CDS 50.0%
GTAGAAGTGAAGCATGCCGA+GGG - chr4_1:59797440-59797459 Msa0560500:CDS 50.0%
! CTCCCCTTGTTTGGTTGGTT+TGG + chr4_1:59797489-59797508 None:intergenic 50.0%
CAAACCAACCAAACAAGGGG+AGG - chr4_1:59797487-59797506 Msa0560500:CDS 50.0%
TAGAGGACATTGTGGCTGAG+AGG - chr4_1:59797889-59797908 Msa0560500:intron 50.0%
! GGGTTTGGGTCTTTCTAGCA+TGG - chr4_1:59798035-59798054 Msa0560500:intron 50.0%
! GTCTTTCTAGCATGGGGAGT+CGG - chr4_1:59798043-59798062 Msa0560500:intron 50.0%
TTGGACAGTGAGGATGCTTC+GGG - chr4_1:59798666-59798685 Msa0560500:intron 50.0%
GGAAGAACTGCAGCTTCTTC+AGG - chr4_1:59798687-59798706 Msa0560500:intron 50.0%
! CAGGAGCCTGGTTCTTATGT+TGG - chr4_1:59798706-59798725 Msa0560500:CDS 50.0%
CTTGATCCACTCCACCATGA+TGG - chr4_1:59798800-59798819 Msa0560500:intron 50.0%
! ATTGAGCCATCATGGTGGAG+TGG + chr4_1:59798809-59798828 None:intergenic 50.0%
AGCACCACTATAGCGGCTAT+TGG + chr4_1:59798996-59799015 None:intergenic 50.0%
CCATGTATGCTGACAGAGGA+TGG + chr4_1:59800170-59800189 None:intergenic 50.0%
CCATCCTCTGTCAGCATACA+TGG - chr4_1:59800167-59800186 Msa0560500:intron 50.0%
ACAGCCATGTATGCTGACAG+AGG + chr4_1:59800174-59800193 None:intergenic 50.0%
! TCACAGGGTGTCTTGCTCTA+TGG - chr4_1:59800227-59800246 Msa0560500:intron 50.0%
! CACAGGGTGTCTTGCTCTAT+GGG - chr4_1:59800228-59800247 Msa0560500:intron 50.0%
! AACATTGTTGGCTAGGGCAG+TGG - chr4_1:59800268-59800287 Msa0560500:intron 50.0%
GGATCTGCTCGTATGGAATC+TGG - chr4_1:59800827-59800846 Msa0560500:intron 50.0%
GCTCGTATGGAATCTGGAAG+TGG - chr4_1:59800833-59800852 Msa0560500:intron 50.0%
TGAAGTGCAGCGTACTATGC+TGG - chr4_1:59800868-59800887 Msa0560500:intron 50.0%
GCTGGAACTTCTCAACCAGT+TGG - chr4_1:59800886-59800905 Msa0560500:intron 50.0%
ATCTTCCTGTCAATCCGTCC+AGG + chr4_1:59801177-59801196 None:intergenic 50.0%
! AGCATCTGGTGCTGAGCTTA+AGG - chr4_1:59801426-59801445 Msa0560500:intron 50.0%
CAGGTCATGAGGCGAAACAA+AGG - chr4_1:59801739-59801758 Msa0560500:intron 50.0%
TTCATAGTGGTGAGGGTGAC+TGG - chr4_1:59802045-59802064 Msa0560500:intron 50.0%
TCATAGTGGTGAGGGTGACT+GGG - chr4_1:59802046-59802065 Msa0560500:intron 50.0%
!! TGTTTGCTCTGAGAGAGAGG+AGG - chr4_1:59802390-59802409 Msa0560500:CDS 50.0%
!! GTTTGCTCTGAGAGAGAGGA+GGG - chr4_1:59802391-59802410 Msa0560500:CDS 50.0%
!!! TTTTGAGATGGCCGTGGCAA+AGG - chr4_1:59802433-59802452 Msa0560500:CDS 50.0%
CGTGGCAAAGGTGATGAAGA+AGG - chr4_1:59802445-59802464 Msa0560500:CDS 50.0%
TTCGGACGCGATGGTGAAGT+TGG + chr4_1:59797203-59797222 None:intergenic 55.0%
TTGGCAGAGCAATGCTCCTC+CGG + chr4_1:59797470-59797489 None:intergenic 55.0%
! AGACCCTCCCCTTGTTTGGT+TGG + chr4_1:59797494-59797513 None:intergenic 55.0%
GGTGAAGGAGCTGAAGCTCA+TGG + chr4_1:59797541-59797560 None:intergenic 55.0%
ATTGTGGCTGAGAGGCTGGT+TGG - chr4_1:59797897-59797916 Msa0560500:intron 55.0%
! TTGTGGCTGAGAGGCTGGTT+GGG - chr4_1:59797898-59797917 Msa0560500:intron 55.0%
! CTGAGAGGCTGGTTGGGTTT+GGG - chr4_1:59797904-59797923 Msa0560500:intron 55.0%
GGAGCATGCTCCCTGTGAAA+AGG + chr4_1:59800773-59800792 None:intergenic 55.0%
!! GTCTCAGGAGTGCTTGATCC+AGG + chr4_1:59801155-59801174 None:intergenic 55.0%
GATCAAGCACTCCTGAGACC+TGG - chr4_1:59801156-59801175 Msa0560500:CDS 55.0%
AAGCACTCCTGAGACCTGGA+CGG - chr4_1:59801160-59801179 Msa0560500:CDS 55.0%
TGTCAATCCGTCCAGGTCTC+AGG + chr4_1:59801170-59801189 None:intergenic 55.0%
!! TGAGACCTGGACGGATTGAC+AGG - chr4_1:59801169-59801188 Msa0560500:CDS 55.0%
GTGAGGGTGACTGGGTCATT+TGG - chr4_1:59802054-59802073 Msa0560500:intron 55.0%
TAGGCTGTGTGCACTGAAGC+TGG - chr4_1:59802365-59802384 Msa0560500:CDS 55.0%
!!! GGAGGATTTTGAGATGGCCG+TGG - chr4_1:59802427-59802446 Msa0560500:CDS 55.0%
ACGGAGACCCTCCCCTTGTT+TGG + chr4_1:59797498-59797517 None:intergenic 60.0%
CGTTACGTTGCGCCTCGAGA+CGG + chr4_1:59797586-59797605 None:intergenic 60.0%
GGACATTGTGGCTGAGAGGC+TGG - chr4_1:59797893-59797912 Msa0560500:intron 60.0%
! GCTGAGAGGCTGGTTGGGTT+TGG - chr4_1:59797903-59797922 Msa0560500:intron 60.0%
CTGCAGCTTCTTCAGGAGCC+TGG - chr4_1:59798694-59798713 Msa0560500:intron 60.0%
GTCTTGCTCTATGGGCCACC+TGG - chr4_1:59800236-59800255 Msa0560500:intron 60.0%
CTCTATGGGCCACCTGGTAC+AGG - chr4_1:59800242-59800261 Msa0560500:intron 60.0%
! GAGGAGGGTACACGTGACAC+AGG - chr4_1:59802406-59802425 Msa0560500:CDS 60.0%
! GAGGGTACACGTGACACAGG+AGG - chr4_1:59802409-59802428 Msa0560500:CDS 60.0%
! GAAGCATGCCGAGGGTGCAC+CGG - chr4_1:59797448-59797467 Msa0560500:CDS 65.0%
ATGCTCCTCCGGTGCACCCT+CGG + chr4_1:59797459-59797478 None:intergenic 65.0%
! GCATGCCGAGGGTGCACCGG+AGG - chr4_1:59797451-59797470 Msa0560500:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59797154 59802773 59797154 ID=Msa0560500;Name=Msa0560500
chr4_1 mRNA 59797154 59802773 59797154 ID=Msa0560500-mRNA-1;Parent=Msa0560500;Name=Msa0560500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=129|1|1|1|0.88|0.8|10|265|417
chr4_1 exon 59797154 59797559 59797154 ID=Msa0560500-mRNA-1:exon:18595;Parent=Msa0560500-mRNA-1
chr4_1 exon 59798480 59798590 59798480 ID=Msa0560500-mRNA-1:exon:18594;Parent=Msa0560500-mRNA-1
chr4_1 exon 59798706 59798804 59798706 ID=Msa0560500-mRNA-1:exon:18593;Parent=Msa0560500-mRNA-1
chr4_1 exon 59798990 59799146 59798990 ID=Msa0560500-mRNA-1:exon:18592;Parent=Msa0560500-mRNA-1
chr4_1 exon 59799531 59799694 59799531 ID=Msa0560500-mRNA-1:exon:18591;Parent=Msa0560500-mRNA-1
chr4_1 exon 59799791 59799853 59799791 ID=Msa0560500-mRNA-1:exon:18590;Parent=Msa0560500-mRNA-1
chr4_1 exon 59799956 59800180 59799956 ID=Msa0560500-mRNA-1:exon:18589;Parent=Msa0560500-mRNA-1
chr4_1 exon 59801156 59801253 59801156 ID=Msa0560500-mRNA-1:exon:18588;Parent=Msa0560500-mRNA-1
chr4_1 exon 59802307 59802524 59802307 ID=Msa0560500-mRNA-1:exon:18587;Parent=Msa0560500-mRNA-1
chr4_1 exon 59802667 59802773 59802667 ID=Msa0560500-mRNA-1:exon:18586;Parent=Msa0560500-mRNA-1
chr4_1 five_prime_UTR 59802667 59802773 59802667 ID=Msa0560500-mRNA-1:five_prime_utr;Parent=Msa0560500-mRNA-1
chr4_1 five_prime_UTR 59802503 59802524 59802503 ID=Msa0560500-mRNA-1:five_prime_utr;Parent=Msa0560500-mRNA-1
chr4_1 CDS 59802307 59802502 59802307 ID=Msa0560500-mRNA-1:cds;Parent=Msa0560500-mRNA-1
chr4_1 CDS 59801156 59801253 59801156 ID=Msa0560500-mRNA-1:cds;Parent=Msa0560500-mRNA-1
chr4_1 CDS 59799956 59800180 59799956 ID=Msa0560500-mRNA-1:cds;Parent=Msa0560500-mRNA-1
chr4_1 CDS 59799791 59799853 59799791 ID=Msa0560500-mRNA-1:cds;Parent=Msa0560500-mRNA-1
chr4_1 CDS 59799531 59799694 59799531 ID=Msa0560500-mRNA-1:cds;Parent=Msa0560500-mRNA-1
chr4_1 CDS 59798990 59799146 59798990 ID=Msa0560500-mRNA-1:cds;Parent=Msa0560500-mRNA-1
chr4_1 CDS 59798706 59798804 59798706 ID=Msa0560500-mRNA-1:cds;Parent=Msa0560500-mRNA-1
chr4_1 CDS 59798480 59798590 59798480 ID=Msa0560500-mRNA-1:cds;Parent=Msa0560500-mRNA-1
chr4_1 CDS 59797419 59797559 59797419 ID=Msa0560500-mRNA-1:cds;Parent=Msa0560500-mRNA-1
chr4_1 three_prime_UTR 59797154 59797418 59797154 ID=Msa0560500-mRNA-1:three_prime_utr;Parent=Msa0560500-mRNA-1
Gene Sequence

>Msa0560500

ATGGCTGCCGTCGGAGTAGAAGTGAAGCATGCCGAGGGTGCACCGGAGGAGCATTGCTCTGCCAAACCAACCAAACAAGGGGAGGGTCTCCGTCAATACTATACTCAGCACATCCATGAGCTTCAGCTCCTTCACCGTCAAAAGAATCATAATCTTAACCGTCTCGAGGCGCAACGTAACGAGCTCAATTCTAGGGTGAGGATGCTTCGGGAAGAACTGCAGCTTCTTCAGGAGCCTGGTTCTTATGTTGGCGAAGTCGTTAAAGTGATGGGCAAGAACAAAGTCTTGGTCAAGGTCCATCCAGAAGGGAAATATGTTGTTGATATTGATAAAAATATTGACATCACAAAGATTACACCATCTACTAGAGTTGCTCTTCGCAACGACAGTTATGTGCTTCATTTAGTTCTTCCAAGCAAAGTTGATCCATTGGTTAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACATATGACATGATTGGTGGTTTAGACCAACAAATCAAAGAAATAAAAGAGGTCATTGAGCTTCCAATTAAACATCCTGAGCTTTTTGAAAGTCTTGGAATAGCTCAACCGAAGGGTGTCTTGCTCTATGGGCCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTGGCACATCATACTGATTGTACATTCATCAGGGTGTCTGGTTCTGAACTTGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTTAGGGAACTTTTTGTTATGGCCAGGGAGCATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGTATGGAATCTGGAAGTGGCAATGGTGATAGTGAAGTGCAGCGTACTATGCTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTCCAATAAGATCAAGGTTTTGATGGCCACCAATCGGATTGATATCCTGGATCAAGCACTCCTGAGACCTGGACGGATTGACAGGAAGATTGAATTTCCAAATCCTAATGAAGAGTCTCGCCGAGATATCTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGTATTGACTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCTGAGCTTAAGGCTGTGTGCACTGAAGCTGGAATGTTTGCTCTGAGAGAGAGGAGGGTACACGTGACACAGGAGGATTTTGAGATGGCCGTGGCAAAGGTGATGAAGAAGGAGACCGAGAAAAACATGTCATTGAGGAAGTTGTGGAAGTGA
Protein sequence

>Msa0560500

MAAVGVEVKHAEGAPEEHCSAKPTKQGEGLRQYYTQHIHELQLLHRQKNHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRRDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*