AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076320 MtrunA17_Chr1g0185271 92.121 165 6 1 1 158 1 165 4.93e-87 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076320 AT4G04614.1 56.589 129 51 3 31 158 52 176 8.57e-42 137
Msa0076320 AT4G04614.2 56.589 129 51 3 31 158 52 176 8.57e-42 137

Find 50 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTGTGTCATCTTCTT+TGG 0.118453 1_2:+52302050 None:intergenic
GTCTGTCTCTGCTTCTTTCT+AGG 0.170078 1_2:-52303687 Msa0076320:intron
CTCTGTTCTTCTTTGTTGAT+TGG 0.201550 1_2:+52303715 None:intergenic
TTCTTTGTGTCATCTTCTTT+GGG 0.233840 1_2:+52302051 None:intergenic
AAATCATTTACAATCTAAAA+TGG 0.234526 1_2:+52301637 None:intergenic
GATTCCTGATTGTTGCTTGC+TGG 0.236203 1_2:+52303744 None:intergenic
ATTCTGATTCTGATTCAAAA+AGG 0.241432 1_2:+52301605 None:intergenic
AGGGACAATGGAGTTTATTC+TGG 0.281268 1_2:-52301796 Msa0076320:CDS
CTGAAGCGATACGGCTATAA+AGG 0.293708 1_2:-52302102 Msa0076320:CDS
TAAATCTACAAAGCAGAAAA+AGG 0.315518 1_2:-52302145 Msa0076320:CDS
CAATCACAAACCCTAATTAC+TGG 0.327652 1_2:+52303774 None:intergenic
AGGCGGACCTTCAGTCTTAA+AGG 0.331123 1_2:-52302082 Msa0076320:CDS
ATTCCTGATTGTTGCTTGCT+GGG 0.339631 1_2:+52303745 None:intergenic
TCTGAAAATGATAGTGAAAC+TGG 0.358513 1_2:-52303248 Msa0076320:CDS
CTCAGAAGGAAAAGAAGAAA+AGG 0.400791 1_2:-52301876 Msa0076320:CDS
GAAAAGAAGAAAAGGGATCT+TGG 0.429119 1_2:-52301868 Msa0076320:CDS
TTCTGGTTTCGATTCTTGAT+AGG 0.432577 1_2:-52301779 Msa0076320:exon
TTCAGAGCTTCAAAGTCAAT+TGG 0.442566 1_2:+52302120 None:intergenic
GGGATCTTGGTCAAGCAAGC+AGG 0.451956 1_2:-52301855 Msa0076320:CDS
AAGATGACACAAAGAAAGAT+TGG 0.453949 1_2:-52302044 Msa0076320:CDS
GTGTCATCTTCTTTGGGTGG+AGG 0.460313 1_2:+52302057 None:intergenic
GGACCCAGCAAGCAACAATC+AGG 0.472443 1_2:-52303748 Msa0076320:five_prime_UTR
ATTCCATTGCGATTCTTCAA+TGG 0.473292 1_2:+52303807 None:intergenic
CAGTTGGCATTTGCTCTCCT+AGG 0.493250 1_2:+52301935 None:intergenic
ATTATGTTGAAGAAGAGAAA+AGG 0.499802 1_2:-52301825 Msa0076320:CDS
TTTGTGTCATCTTCTTTGGG+TGG 0.516808 1_2:+52302054 None:intergenic
TCAGAAGGAAAAGAAGAAAA+GGG 0.533332 1_2:-52301875 Msa0076320:CDS
AGAAGAGAAAAGGCTGTTGA+GGG 0.535745 1_2:-52301815 Msa0076320:CDS
GGATCTTGGTCAAGCAAGCA+GGG 0.541283 1_2:-52301854 Msa0076320:CDS
TCATTCCTAGTCAGAACAGT+TGG 0.556209 1_2:+52301919 None:intergenic
ACACAAAGAAAGATTGGTCC+TGG 0.556354 1_2:-52302038 Msa0076320:CDS
ACAAGAGAGGCTCTTTCCCT+AGG 0.557271 1_2:-52301952 Msa0076320:CDS
AAATGTAGTAGATTCTAGCC+TGG 0.557710 1_2:+52301756 None:intergenic
GTTTCGATTCTTGATAGGCC+AGG 0.558267 1_2:-52301774 Msa0076320:exon
AAAAGGCTGTTGAGGGACAA+TGG 0.563867 1_2:-52301808 Msa0076320:CDS
TTTGAAGCTCTGAAGCGATA+CGG 0.565621 1_2:-52302111 Msa0076320:CDS
TTGGTCCTGGTCCAGTGGAA+AGG 0.567873 1_2:-52302025 Msa0076320:CDS
AGTTGGCATTTGCTCTCCTA+GGG 0.578927 1_2:+52301936 None:intergenic
AAGAAGAGAAAAGGCTGTTG+AGG 0.580825 1_2:-52301816 Msa0076320:CDS
AAAGATTGGTCCTGGTCCAG+TGG 0.594354 1_2:-52302030 Msa0076320:CDS
GGAGGTACCTTTAAGACTGA+AGG 0.597747 1_2:+52302075 None:intergenic
AAATGCCAACTGTTCTGACT+AGG 0.603014 1_2:-52301924 Msa0076320:CDS
AAACCATTGAAGAATCGCAA+TGG 0.603195 1_2:-52303810 Msa0076320:five_prime_UTR
AATTAGGGTTTGTGATTGCG+AGG 0.603978 1_2:-52303769 Msa0076320:five_prime_UTR
CTATGAAGAGGACAATGCCA+TGG 0.617111 1_2:-52303301 Msa0076320:CDS
ATATAATATATACTATGAAG+AGG 0.621276 1_2:-52303313 Msa0076320:exon
AGAGAGAAAGAAAACAAGAG+AGG 0.657420 1_2:-52301965 Msa0076320:CDS
GATCTTGGTCAAGCAAGCAG+GGG 0.689867 1_2:-52301853 Msa0076320:CDS
AAGCGATACGGCTATAAAGG+CGG 0.718806 1_2:-52302099 Msa0076320:CDS
AAAGAAGCAGAGACAGACAG+AGG 0.721901 1_2:+52303692 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGATTTAATCAATTATT+AGG + chr1_2:52301940-52301959 None:intergenic 10.0%
!!! AATAAATAAAAGTACAAAAA+TGG + chr1_2:52301993-52302012 None:intergenic 10.0%
!! AATAGATTTAATCAATTATT+AGG + chr1_2:52301940-52301959 None:intergenic 10.0%
!!! AATAAATAAAAGTACAAAAA+TGG + chr1_2:52301993-52302012 None:intergenic 10.0%
!!! TATTTATTAATCATTTTTGG+AGG - chr1_2:52302013-52302032 Msa0076320:CDS 15.0%
!! ATATAATATATACTATGAAG+AGG - chr1_2:52302099-52302118 Msa0076320:CDS 15.0%
!! AAATCATTTACAATCTAAAA+TGG + chr1_2:52303778-52303797 None:intergenic 15.0%
!!! ATTTTAGATTGTAAATGATT+TGG - chr1_2:52303777-52303796 Msa0076320:five_prime_UTR 15.0%
!! ATAAAAATTATAATGTTGTC+CGG - chr1_2:52303828-52303847 Msa0076320:five_prime_UTR 15.0%
!!! TATTTATTAATCATTTTTGG+AGG - chr1_2:52302013-52302032 Msa0076320:CDS 15.0%
!! ATATAATATATACTATGAAG+AGG - chr1_2:52302099-52302118 Msa0076320:CDS 15.0%
!! AAATCATTTACAATCTAAAA+TGG + chr1_2:52303778-52303797 None:intergenic 15.0%
!!! ATTTTAGATTGTAAATGATT+TGG - chr1_2:52303777-52303796 Msa0076320:five_prime_UTR 15.0%
!!! TTATGCTTTTTTGTTTGTTT+TGG - chr1_2:52301776-52301795 Msa0076320:exon 20.0%
!!! AACAGTTTTCAAAGTTTTAT+GGG - chr1_2:52301884-52301903 Msa0076320:CDS 20.0%
!!! TAAAATACCTTTGGATTTTT+TGG + chr1_2:52302192-52302211 None:intergenic 20.0%
!! ATATAATTCAACGTAGTTAT+AGG + chr1_2:52302226-52302245 None:intergenic 20.0%
!! TGATAAGTGAAAATAGTATT+TGG - chr1_2:52302453-52302472 Msa0076320:intron 20.0%
!! GAAATCTAATGTGATAAATT+AGG - chr1_2:52302669-52302688 Msa0076320:intron 20.0%
!!! ATTGTTTTAGATTTTGTTGT+TGG - chr1_2:52302819-52302838 Msa0076320:intron 20.0%
!!! TTGTTTTAGATTTTGTTGTT+GGG - chr1_2:52302820-52302839 Msa0076320:intron 20.0%
!! AAGAACTATTATAGCATTAT+TGG + chr1_2:52302937-52302956 None:intergenic 20.0%
!! ATATTCTAATTTACATTTCC+TGG + chr1_2:52303024-52303043 None:intergenic 20.0%
!! GGAAATGTAAATTAGAATAT+CGG - chr1_2:52303024-52303043 Msa0076320:intron 20.0%
!! GAAATGTAAATTAGAATATC+GGG - chr1_2:52303025-52303044 Msa0076320:intron 20.0%
!! AAATGTAAATTAGAATATCG+GGG - chr1_2:52303026-52303045 Msa0076320:intron 20.0%
!! AGACAATAATATATTGCTAA+CGG + chr1_2:52303063-52303082 None:intergenic 20.0%
!!! ATCTACTACATTTTGTATAA+AGG - chr1_2:52303666-52303685 Msa0076320:intron 20.0%
!! TAAAAATTATAATGTTGTCC+GGG - chr1_2:52303829-52303848 Msa0076320:five_prime_UTR 20.0%
!!! TTATGCTTTTTTGTTTGTTT+TGG - chr1_2:52301776-52301795 Msa0076320:exon 20.0%
!!! AACAGTTTTCAAAGTTTTAT+GGG - chr1_2:52301884-52301903 Msa0076320:CDS 20.0%
!!! TAAAATACCTTTGGATTTTT+TGG + chr1_2:52302192-52302211 None:intergenic 20.0%
!! ATATAATTCAACGTAGTTAT+AGG + chr1_2:52302226-52302245 None:intergenic 20.0%
!! TGATAAGTGAAAATAGTATT+TGG - chr1_2:52302453-52302472 Msa0076320:intron 20.0%
!! GAAATCTAATGTGATAAATT+AGG - chr1_2:52302669-52302688 Msa0076320:intron 20.0%
!!! ATTGTTTTAGATTTTGTTGT+TGG - chr1_2:52302819-52302838 Msa0076320:intron 20.0%
!!! TTGTTTTAGATTTTGTTGTT+GGG - chr1_2:52302820-52302839 Msa0076320:intron 20.0%
!! AAGAACTATTATAGCATTAT+TGG + chr1_2:52302937-52302956 None:intergenic 20.0%
!! ATATTCTAATTTACATTTCC+TGG + chr1_2:52303024-52303043 None:intergenic 20.0%
!! GGAAATGTAAATTAGAATAT+CGG - chr1_2:52303024-52303043 Msa0076320:intron 20.0%
!! GAAATGTAAATTAGAATATC+GGG - chr1_2:52303025-52303044 Msa0076320:intron 20.0%
!! AAATGTAAATTAGAATATCG+GGG - chr1_2:52303026-52303045 Msa0076320:intron 20.0%
!! AGACAATAATATATTGCTAA+CGG + chr1_2:52303063-52303082 None:intergenic 20.0%
!!! ATCTACTACATTTTGTATAA+AGG - chr1_2:52303666-52303685 Msa0076320:intron 20.0%
!! AACAGACATGAATGAATTTT+GGG + chr1_2:52301812-52301831 None:intergenic 25.0%
!! AAACAGACATGAATGAATTT+TGG + chr1_2:52301813-52301832 None:intergenic 25.0%
!! GAACAGTTTTCAAAGTTTTA+TGG - chr1_2:52301883-52301902 Msa0076320:CDS 25.0%
!!! TAATCATTTTTGGAGGTTTA+AGG - chr1_2:52302020-52302039 Msa0076320:CDS 25.0%
! TTGTTTATGTGCTAATTAAC+AGG - chr1_2:52302065-52302084 Msa0076320:CDS 25.0%
! TGTTTATGTGCTAATTAACA+GGG - chr1_2:52302066-52302085 Msa0076320:CDS 25.0%
! CGTTGAATTATATGTTTAAG+TGG - chr1_2:52302233-52302252 Msa0076320:intron 25.0%
! GATTTATGAAACACTAACAA+CGG - chr1_2:52302299-52302318 Msa0076320:intron 25.0%
!!! ACACTTTTAATCTGAAGTAT+CGG - chr1_2:52302416-52302435 Msa0076320:intron 25.0%
! AAAACACAAACACTAATTGT+GGG + chr1_2:52302549-52302568 None:intergenic 25.0%
!! ACAATTAGTGTTTGTGTTTT+GGG - chr1_2:52302549-52302568 Msa0076320:intron 25.0%
!! ATTATCTGAAGATCATTTTG+TGG - chr1_2:52302644-52302663 Msa0076320:intron 25.0%
! AGTGATAGCTGATAATATTA+TGG - chr1_2:52302720-52302739 Msa0076320:intron 25.0%
!!! TGTTTTAGATTTTGTTGTTG+GGG - chr1_2:52302821-52302840 Msa0076320:intron 25.0%
! TAAATCTACAAAGCAGAAAA+AGG - chr1_2:52303267-52303286 Msa0076320:CDS 25.0%
! ATTATGTTGAAGAAGAGAAA+AGG - chr1_2:52303587-52303606 Msa0076320:intron 25.0%
!!! TCATGTCATTTTGTTATACA+AGG - chr1_2:52303704-52303723 Msa0076320:five_prime_UTR 25.0%
!!! CATTTTGTTATACAAGGATT+TGG - chr1_2:52303710-52303729 Msa0076320:five_prime_UTR 25.0%
! TTCTGATTCTGATTCAAAAA+GGG + chr1_2:52303809-52303828 None:intergenic 25.0%
! ATTCTGATTCTGATTCAAAA+AGG + chr1_2:52303810-52303829 None:intergenic 25.0%
!! AACAGACATGAATGAATTTT+GGG + chr1_2:52301812-52301831 None:intergenic 25.0%
!! AAACAGACATGAATGAATTT+TGG + chr1_2:52301813-52301832 None:intergenic 25.0%
!! GAACAGTTTTCAAAGTTTTA+TGG - chr1_2:52301883-52301902 Msa0076320:CDS 25.0%
!!! TAATCATTTTTGGAGGTTTA+AGG - chr1_2:52302020-52302039 Msa0076320:CDS 25.0%
! TTGTTTATGTGCTAATTAAC+AGG - chr1_2:52302065-52302084 Msa0076320:CDS 25.0%
! TGTTTATGTGCTAATTAACA+GGG - chr1_2:52302066-52302085 Msa0076320:CDS 25.0%
! CGTTGAATTATATGTTTAAG+TGG - chr1_2:52302233-52302252 Msa0076320:intron 25.0%
! GATTTATGAAACACTAACAA+CGG - chr1_2:52302299-52302318 Msa0076320:intron 25.0%
!!! ACACTTTTAATCTGAAGTAT+CGG - chr1_2:52302416-52302435 Msa0076320:intron 25.0%
! AAAACACAAACACTAATTGT+GGG + chr1_2:52302549-52302568 None:intergenic 25.0%
!! ACAATTAGTGTTTGTGTTTT+GGG - chr1_2:52302549-52302568 Msa0076320:intron 25.0%
!! ATTATCTGAAGATCATTTTG+TGG - chr1_2:52302644-52302663 Msa0076320:intron 25.0%
! AGTGATAGCTGATAATATTA+TGG - chr1_2:52302720-52302739 Msa0076320:intron 25.0%
!!! TGTTTTAGATTTTGTTGTTG+GGG - chr1_2:52302821-52302840 Msa0076320:intron 25.0%
! TAAATCTACAAAGCAGAAAA+AGG - chr1_2:52303267-52303286 Msa0076320:CDS 25.0%
! ATTATGTTGAAGAAGAGAAA+AGG - chr1_2:52303587-52303606 Msa0076320:intron 25.0%
!!! TCATGTCATTTTGTTATACA+AGG - chr1_2:52303704-52303723 Msa0076320:five_prime_UTR 25.0%
!!! CATTTTGTTATACAAGGATT+TGG - chr1_2:52303710-52303729 Msa0076320:five_prime_UTR 25.0%
! TTCTGATTCTGATTCAAAAA+GGG + chr1_2:52303809-52303828 None:intergenic 25.0%
! ATTCTGATTCTGATTCAAAA+AGG + chr1_2:52303810-52303829 None:intergenic 25.0%
TACCCTAAAAACCAGTAATT+AGG - chr1_2:52301627-52301646 Msa0076320:three_prime_UTR 30.0%
ACCCTAAAAACCAGTAATTA+GGG - chr1_2:52301628-52301647 Msa0076320:three_prime_UTR 30.0%
!!! ACCCTAATTACTGGTTTTTA+GGG + chr1_2:52301632-52301651 None:intergenic 30.0%
!!! AACCCTAATTACTGGTTTTT+AGG + chr1_2:52301633-52301652 None:intergenic 30.0%
AAGCATAAAGCTGAAAAACA+TGG + chr1_2:52301764-52301783 None:intergenic 30.0%
! ACAGACATGAATGAATTTTG+GGG + chr1_2:52301811-52301830 None:intergenic 30.0%
TCAATTATTAGGAAGTGATG+AGG + chr1_2:52301929-52301948 None:intergenic 30.0%
! TCTGAAAATGATAGTGAAAC+TGG - chr1_2:52302164-52302183 Msa0076320:intron 30.0%
GATACTTCAGATTAAAAGTG+TGG + chr1_2:52302417-52302436 None:intergenic 30.0%
AAATGTACTTACTTGAACCT+AGG - chr1_2:52302478-52302497 Msa0076320:intron 30.0%
CAAAACACAAACACTAATTG+TGG + chr1_2:52302550-52302569 None:intergenic 30.0%
! CACAATTAGTGTTTGTGTTT+TGG - chr1_2:52302548-52302567 Msa0076320:intron 30.0%
!! AAAATCTCATCTCTAGAATG+TGG - chr1_2:52302583-52302602 Msa0076320:intron 30.0%
ATGTGATAAATTAGGAGTTC+TGG - chr1_2:52302677-52302696 Msa0076320:intron 30.0%
! TCCTTGTATTTCCTTGTTAT+TGG - chr1_2:52302784-52302803 Msa0076320:intron 30.0%
ACCAATAACAAGGAAATACA+AGG + chr1_2:52302788-52302807 None:intergenic 30.0%
ATCACAATACACCAATAACA+AGG + chr1_2:52302798-52302817 None:intergenic 30.0%
! ATAGCATTATTGGCTGATTT+AGG + chr1_2:52302927-52302946 None:intergenic 30.0%
! AACTAGAGTAGATATTTTCC+AGG - chr1_2:52303003-52303022 Msa0076320:intron 30.0%
CAATAATATATTGCTAACGG+AGG + chr1_2:52303060-52303079 None:intergenic 30.0%
GCTAATTAAGTCACACAATA+TGG + chr1_2:52303094-52303113 None:intergenic 30.0%
ACTAGTAACTAAGCAACATA+TGG + chr1_2:52303224-52303243 None:intergenic 30.0%
TTCTTTGTGTCATCTTCTTT+GGG + chr1_2:52303364-52303383 None:intergenic 30.0%
TTTCTTTGTGTCATCTTCTT+TGG + chr1_2:52303365-52303384 None:intergenic 30.0%
AAGATGACACAAAGAAAGAT+TGG - chr1_2:52303368-52303387 Msa0076320:intron 30.0%
TCAGAAGGAAAAGAAGAAAA+GGG - chr1_2:52303537-52303556 Msa0076320:intron 30.0%
TACCCTAAAAACCAGTAATT+AGG - chr1_2:52301627-52301646 Msa0076320:three_prime_UTR 30.0%
ACCCTAAAAACCAGTAATTA+GGG - chr1_2:52301628-52301647 Msa0076320:three_prime_UTR 30.0%
!!! ACCCTAATTACTGGTTTTTA+GGG + chr1_2:52301632-52301651 None:intergenic 30.0%
!!! AACCCTAATTACTGGTTTTT+AGG + chr1_2:52301633-52301652 None:intergenic 30.0%
AAGCATAAAGCTGAAAAACA+TGG + chr1_2:52301764-52301783 None:intergenic 30.0%
! ACAGACATGAATGAATTTTG+GGG + chr1_2:52301811-52301830 None:intergenic 30.0%
TCAATTATTAGGAAGTGATG+AGG + chr1_2:52301929-52301948 None:intergenic 30.0%
! TCTGAAAATGATAGTGAAAC+TGG - chr1_2:52302164-52302183 Msa0076320:intron 30.0%
GATACTTCAGATTAAAAGTG+TGG + chr1_2:52302417-52302436 None:intergenic 30.0%
AAATGTACTTACTTGAACCT+AGG - chr1_2:52302478-52302497 Msa0076320:intron 30.0%
CAAAACACAAACACTAATTG+TGG + chr1_2:52302550-52302569 None:intergenic 30.0%
! CACAATTAGTGTTTGTGTTT+TGG - chr1_2:52302548-52302567 Msa0076320:intron 30.0%
!! AAAATCTCATCTCTAGAATG+TGG - chr1_2:52302583-52302602 Msa0076320:intron 30.0%
ATGTGATAAATTAGGAGTTC+TGG - chr1_2:52302677-52302696 Msa0076320:intron 30.0%
! TCCTTGTATTTCCTTGTTAT+TGG - chr1_2:52302784-52302803 Msa0076320:intron 30.0%
ACCAATAACAAGGAAATACA+AGG + chr1_2:52302788-52302807 None:intergenic 30.0%
ATCACAATACACCAATAACA+AGG + chr1_2:52302798-52302817 None:intergenic 30.0%
! ATAGCATTATTGGCTGATTT+AGG + chr1_2:52302927-52302946 None:intergenic 30.0%
! AACTAGAGTAGATATTTTCC+AGG - chr1_2:52303003-52303022 Msa0076320:intron 30.0%
CAATAATATATTGCTAACGG+AGG + chr1_2:52303060-52303079 None:intergenic 30.0%
GCTAATTAAGTCACACAATA+TGG + chr1_2:52303094-52303113 None:intergenic 30.0%
ACTAGTAACTAAGCAACATA+TGG + chr1_2:52303224-52303243 None:intergenic 30.0%
TTCTTTGTGTCATCTTCTTT+GGG + chr1_2:52303364-52303383 None:intergenic 30.0%
TTTCTTTGTGTCATCTTCTT+TGG + chr1_2:52303365-52303384 None:intergenic 30.0%
AAGATGACACAAAGAAAGAT+TGG - chr1_2:52303368-52303387 Msa0076320:intron 30.0%
TCAGAAGGAAAAGAAGAAAA+GGG - chr1_2:52303537-52303556 Msa0076320:intron 30.0%
AAACCATTGAAGAATCGCAA+TGG - chr1_2:52301602-52301621 Msa0076320:three_prime_UTR 35.0%
ATTCCATTGCGATTCTTCAA+TGG + chr1_2:52301608-52301627 None:intergenic 35.0%
CAATCACAAACCCTAATTAC+TGG + chr1_2:52301641-52301660 None:intergenic 35.0%
CTCTGTTCTTCTTTGTTGAT+TGG + chr1_2:52301700-52301719 None:intergenic 35.0%
!! TGAATGAATTTTGGGGGAAA+AGG + chr1_2:52301804-52301823 None:intergenic 35.0%
! CAGACATGAATGAATTTTGG+GGG + chr1_2:52301810-52301829 None:intergenic 35.0%
GATGCACACTAAAATACCTT+TGG + chr1_2:52302201-52302220 None:intergenic 35.0%
TGACACTAACACTTTGATGT+TGG - chr1_2:52302331-52302350 Msa0076320:intron 35.0%
AATCTAATCGTGTGTAGTGT+TGG - chr1_2:52302381-52302400 Msa0076320:intron 35.0%
AAGGAATCTCTTCTACAATG+GGG + chr1_2:52302769-52302788 None:intergenic 35.0%
CAAGGAATCTCTTCTACAAT+GGG + chr1_2:52302770-52302789 None:intergenic 35.0%
ACAAGGAATCTCTTCTACAA+TGG + chr1_2:52302771-52302790 None:intergenic 35.0%
AGATGGTTCATAAACAGTTG+TGG - chr1_2:52302884-52302903 Msa0076320:intron 35.0%
CAAGAGTTTCTTGACTTTCA+AGG - chr1_2:52302979-52302998 Msa0076320:intron 35.0%
!! TTCTGAAATCCGTATCATGA+TGG - chr1_2:52303140-52303159 Msa0076320:intron 35.0%
AGTATGAAGCCATCATGATA+CGG + chr1_2:52303152-52303171 None:intergenic 35.0%
TTAACTTACTTCATGTCTGC+AGG - chr1_2:52303244-52303263 Msa0076320:CDS 35.0%
TTCAGAGCTTCAAAGTCAAT+TGG + chr1_2:52303295-52303314 None:intergenic 35.0%
AGAGAGAAAGAAAACAAGAG+AGG - chr1_2:52303447-52303466 Msa0076320:intron 35.0%
! GAATCTTTCCTTTTCTCAGA+AGG - chr1_2:52303522-52303541 Msa0076320:intron 35.0%
!! CTTCTTTTCCTTCTGAGAAA+AGG + chr1_2:52303533-52303552 None:intergenic 35.0%
CTCAGAAGGAAAAGAAGAAA+AGG - chr1_2:52303536-52303555 Msa0076320:intron 35.0%
GAAAAGAAGAAAAGGGATCT+TGG - chr1_2:52303544-52303563 Msa0076320:intron 35.0%
!! TTCTGGTTTCGATTCTTGAT+AGG - chr1_2:52303633-52303652 Msa0076320:intron 35.0%
AAATGTAGTAGATTCTAGCC+TGG + chr1_2:52303659-52303678 None:intergenic 35.0%
AAACCATTGAAGAATCGCAA+TGG - chr1_2:52301602-52301621 Msa0076320:three_prime_UTR 35.0%
ATTCCATTGCGATTCTTCAA+TGG + chr1_2:52301608-52301627 None:intergenic 35.0%
CAATCACAAACCCTAATTAC+TGG + chr1_2:52301641-52301660 None:intergenic 35.0%
CTCTGTTCTTCTTTGTTGAT+TGG + chr1_2:52301700-52301719 None:intergenic 35.0%
!! TGAATGAATTTTGGGGGAAA+AGG + chr1_2:52301804-52301823 None:intergenic 35.0%
! CAGACATGAATGAATTTTGG+GGG + chr1_2:52301810-52301829 None:intergenic 35.0%
GATGCACACTAAAATACCTT+TGG + chr1_2:52302201-52302220 None:intergenic 35.0%
TGACACTAACACTTTGATGT+TGG - chr1_2:52302331-52302350 Msa0076320:intron 35.0%
AATCTAATCGTGTGTAGTGT+TGG - chr1_2:52302381-52302400 Msa0076320:intron 35.0%
AAGGAATCTCTTCTACAATG+GGG + chr1_2:52302769-52302788 None:intergenic 35.0%
CAAGGAATCTCTTCTACAAT+GGG + chr1_2:52302770-52302789 None:intergenic 35.0%
ACAAGGAATCTCTTCTACAA+TGG + chr1_2:52302771-52302790 None:intergenic 35.0%
AGATGGTTCATAAACAGTTG+TGG - chr1_2:52302884-52302903 Msa0076320:intron 35.0%
CAAGAGTTTCTTGACTTTCA+AGG - chr1_2:52302979-52302998 Msa0076320:intron 35.0%
!! TTCTGAAATCCGTATCATGA+TGG - chr1_2:52303140-52303159 Msa0076320:intron 35.0%
AGTATGAAGCCATCATGATA+CGG + chr1_2:52303152-52303171 None:intergenic 35.0%
TTAACTTACTTCATGTCTGC+AGG - chr1_2:52303244-52303263 Msa0076320:CDS 35.0%
TTCAGAGCTTCAAAGTCAAT+TGG + chr1_2:52303295-52303314 None:intergenic 35.0%
AGAGAGAAAGAAAACAAGAG+AGG - chr1_2:52303447-52303466 Msa0076320:intron 35.0%
! GAATCTTTCCTTTTCTCAGA+AGG - chr1_2:52303522-52303541 Msa0076320:intron 35.0%
!! CTTCTTTTCCTTCTGAGAAA+AGG + chr1_2:52303533-52303552 None:intergenic 35.0%
CTCAGAAGGAAAAGAAGAAA+AGG - chr1_2:52303536-52303555 Msa0076320:intron 35.0%
GAAAAGAAGAAAAGGGATCT+TGG - chr1_2:52303544-52303563 Msa0076320:intron 35.0%
!! TTCTGGTTTCGATTCTTGAT+AGG - chr1_2:52303633-52303652 Msa0076320:intron 35.0%
AAATGTAGTAGATTCTAGCC+TGG + chr1_2:52303659-52303678 None:intergenic 35.0%
AATTAGGGTTTGTGATTGCG+AGG - chr1_2:52301643-52301662 Msa0076320:three_prime_UTR 40.0%
! ATTCCTGATTGTTGCTTGCT+GGG + chr1_2:52301670-52301689 None:intergenic 40.0%
TCATCATCATCATCACTCCA+TGG + chr1_2:52302131-52302150 None:intergenic 40.0%
ACTGGAGCCAAAAAATCCAA+AGG - chr1_2:52302182-52302201 Msa0076320:intron 40.0%
CTTGAACCTAGGATGTTGAT+AGG - chr1_2:52302489-52302508 Msa0076320:intron 40.0%
AACGAACCTATCAACATCCT+AGG + chr1_2:52302498-52302517 None:intergenic 40.0%
TTCAGATAATTGCAACGCAG+AGG + chr1_2:52302634-52302653 None:intergenic 40.0%
ACTAACTGAAGGTCAAGATG+GGG + chr1_2:52302856-52302875 None:intergenic 40.0%
CACTAACTGAAGGTCAAGAT+GGG + chr1_2:52302857-52302876 None:intergenic 40.0%
TCTTGCATTGCACTAACTGA+AGG + chr1_2:52302867-52302886 None:intergenic 40.0%
TCAGTTAGTGCAATGCAAGA+TGG - chr1_2:52302867-52302886 Msa0076320:intron 40.0%
AACTAAGCAACATATGGCAG+TGG + chr1_2:52303218-52303237 None:intergenic 40.0%
!! TTTGAAGCTCTGAAGCGATA+CGG - chr1_2:52303301-52303320 Msa0076320:CDS 40.0%
TTTGTGTCATCTTCTTTGGG+TGG + chr1_2:52303361-52303380 None:intergenic 40.0%
! ACACAAAGAAAGATTGGTCC+TGG - chr1_2:52303374-52303393 Msa0076320:intron 40.0%
AAATGCCAACTGTTCTGACT+AGG - chr1_2:52303488-52303507 Msa0076320:intron 40.0%
TCATTCCTAGTCAGAACAGT+TGG + chr1_2:52303496-52303515 None:intergenic 40.0%
AAGAAGAGAAAAGGCTGTTG+AGG - chr1_2:52303596-52303615 Msa0076320:intron 40.0%
AGAAGAGAAAAGGCTGTTGA+GGG - chr1_2:52303597-52303616 Msa0076320:intron 40.0%
AGGGACAATGGAGTTTATTC+TGG - chr1_2:52303616-52303635 Msa0076320:intron 40.0%
! GGTTTTTGTTAGTTACACCC+CGG + chr1_2:52301587-52301606 None:intergenic 40.0%
AATTAGGGTTTGTGATTGCG+AGG - chr1_2:52301643-52301662 Msa0076320:three_prime_UTR 40.0%
! ATTCCTGATTGTTGCTTGCT+GGG + chr1_2:52301670-52301689 None:intergenic 40.0%
TCATCATCATCATCACTCCA+TGG + chr1_2:52302131-52302150 None:intergenic 40.0%
ACTGGAGCCAAAAAATCCAA+AGG - chr1_2:52302182-52302201 Msa0076320:intron 40.0%
CTTGAACCTAGGATGTTGAT+AGG - chr1_2:52302489-52302508 Msa0076320:intron 40.0%
AACGAACCTATCAACATCCT+AGG + chr1_2:52302498-52302517 None:intergenic 40.0%
TTCAGATAATTGCAACGCAG+AGG + chr1_2:52302634-52302653 None:intergenic 40.0%
ACTAACTGAAGGTCAAGATG+GGG + chr1_2:52302856-52302875 None:intergenic 40.0%
CACTAACTGAAGGTCAAGAT+GGG + chr1_2:52302857-52302876 None:intergenic 40.0%
TCTTGCATTGCACTAACTGA+AGG + chr1_2:52302867-52302886 None:intergenic 40.0%
TCAGTTAGTGCAATGCAAGA+TGG - chr1_2:52302867-52302886 Msa0076320:intron 40.0%
AACTAAGCAACATATGGCAG+TGG + chr1_2:52303218-52303237 None:intergenic 40.0%
!! TTTGAAGCTCTGAAGCGATA+CGG - chr1_2:52303301-52303320 Msa0076320:CDS 40.0%
TTTGTGTCATCTTCTTTGGG+TGG + chr1_2:52303361-52303380 None:intergenic 40.0%
! ACACAAAGAAAGATTGGTCC+TGG - chr1_2:52303374-52303393 Msa0076320:intron 40.0%
AAATGCCAACTGTTCTGACT+AGG - chr1_2:52303488-52303507 Msa0076320:intron 40.0%
TCATTCCTAGTCAGAACAGT+TGG + chr1_2:52303496-52303515 None:intergenic 40.0%
AAGAAGAGAAAAGGCTGTTG+AGG - chr1_2:52303596-52303615 Msa0076320:intron 40.0%
AGAAGAGAAAAGGCTGTTGA+GGG - chr1_2:52303597-52303616 Msa0076320:intron 40.0%
AGGGACAATGGAGTTTATTC+TGG - chr1_2:52303616-52303635 Msa0076320:intron 40.0%
! GATTCCTGATTGTTGCTTGC+TGG + chr1_2:52301671-52301690 None:intergenic 45.0%
AAAGAAGCAGAGACAGACAG+AGG + chr1_2:52301723-52301742 None:intergenic 45.0%
GTCTGTCTCTGCTTCTTTCT+AGG - chr1_2:52301725-52301744 Msa0076320:three_prime_UTR 45.0%
CTATGAAGAGGACAATGCCA+TGG - chr1_2:52302111-52302130 Msa0076320:CDS 45.0%
!! TCGTGTGTAGTGTTGGTGTA+CGG - chr1_2:52302388-52302407 Msa0076320:intron 45.0%
AACGCAGAGGTTTCATACCT+TGG + chr1_2:52302621-52302640 None:intergenic 45.0%
GCACTAACTGAAGGTCAAGA+TGG + chr1_2:52302858-52302877 None:intergenic 45.0%
CTGAAGCGATACGGCTATAA+AGG - chr1_2:52303310-52303329 Msa0076320:exon 45.0%
AAGCGATACGGCTATAAAGG+CGG - chr1_2:52303313-52303332 Msa0076320:exon 45.0%
!! GGAGGTACCTTTAAGACTGA+AGG + chr1_2:52303340-52303359 None:intergenic 45.0%
! TTTTTCCTTTCCACTGGACC+AGG + chr1_2:52303395-52303414 None:intergenic 45.0%
AAAGGAAAAACGCGTCGAGA+AGG - chr1_2:52303405-52303424 Msa0076320:intron 45.0%
AGTTGGCATTTGCTCTCCTA+GGG + chr1_2:52303479-52303498 None:intergenic 45.0%
AAAAGGCTGTTGAGGGACAA+TGG - chr1_2:52303604-52303623 Msa0076320:intron 45.0%
GTTTCGATTCTTGATAGGCC+AGG - chr1_2:52303638-52303657 Msa0076320:intron 45.0%
! GATTCCTGATTGTTGCTTGC+TGG + chr1_2:52301671-52301690 None:intergenic 45.0%
AAAGAAGCAGAGACAGACAG+AGG + chr1_2:52301723-52301742 None:intergenic 45.0%
GTCTGTCTCTGCTTCTTTCT+AGG - chr1_2:52301725-52301744 Msa0076320:three_prime_UTR 45.0%
CTATGAAGAGGACAATGCCA+TGG - chr1_2:52302111-52302130 Msa0076320:CDS 45.0%
!! TCGTGTGTAGTGTTGGTGTA+CGG - chr1_2:52302388-52302407 Msa0076320:intron 45.0%
AACGCAGAGGTTTCATACCT+TGG + chr1_2:52302621-52302640 None:intergenic 45.0%
GCACTAACTGAAGGTCAAGA+TGG + chr1_2:52302858-52302877 None:intergenic 45.0%
CTGAAGCGATACGGCTATAA+AGG - chr1_2:52303310-52303329 Msa0076320:exon 45.0%
AAGCGATACGGCTATAAAGG+CGG - chr1_2:52303313-52303332 Msa0076320:exon 45.0%
!! GGAGGTACCTTTAAGACTGA+AGG + chr1_2:52303340-52303359 None:intergenic 45.0%
! TTTTTCCTTTCCACTGGACC+AGG + chr1_2:52303395-52303414 None:intergenic 45.0%
AAAGGAAAAACGCGTCGAGA+AGG - chr1_2:52303405-52303424 Msa0076320:intron 45.0%
AGTTGGCATTTGCTCTCCTA+GGG + chr1_2:52303479-52303498 None:intergenic 45.0%
AAAAGGCTGTTGAGGGACAA+TGG - chr1_2:52303604-52303623 Msa0076320:intron 45.0%
GTTTCGATTCTTGATAGGCC+AGG - chr1_2:52303638-52303657 Msa0076320:intron 45.0%
!!! ATTTATTTATTAATCATTTT+TGG - chr1_2:52302010-52302029 Msa0076320:CDS 5.0%
!!! ATTTATTTATTAATCATTTT+TGG - chr1_2:52302010-52302029 Msa0076320:CDS 5.0%
! TGTGGATTGACGCTCATCCA+AGG - chr1_2:52302601-52302620 Msa0076320:intron 50.0%
AGGCGGACCTTCAGTCTTAA+AGG - chr1_2:52303330-52303349 Msa0076320:intron 50.0%
GTGTCATCTTCTTTGGGTGG+AGG + chr1_2:52303358-52303377 None:intergenic 50.0%
! AAAGATTGGTCCTGGTCCAG+TGG - chr1_2:52303382-52303401 Msa0076320:intron 50.0%
! GACGCGTTTTTCCTTTCCAC+TGG + chr1_2:52303401-52303420 None:intergenic 50.0%
ACAAGAGAGGCTCTTTCCCT+AGG - chr1_2:52303460-52303479 Msa0076320:intron 50.0%
CAGTTGGCATTTGCTCTCCT+AGG + chr1_2:52303480-52303499 None:intergenic 50.0%
GGATCTTGGTCAAGCAAGCA+GGG - chr1_2:52303558-52303577 Msa0076320:intron 50.0%
GATCTTGGTCAAGCAAGCAG+GGG - chr1_2:52303559-52303578 Msa0076320:intron 50.0%
! TGTGGATTGACGCTCATCCA+AGG - chr1_2:52302601-52302620 Msa0076320:intron 50.0%
AGGCGGACCTTCAGTCTTAA+AGG - chr1_2:52303330-52303349 Msa0076320:intron 50.0%
GTGTCATCTTCTTTGGGTGG+AGG + chr1_2:52303358-52303377 None:intergenic 50.0%
! AAAGATTGGTCCTGGTCCAG+TGG - chr1_2:52303382-52303401 Msa0076320:intron 50.0%
! GACGCGTTTTTCCTTTCCAC+TGG + chr1_2:52303401-52303420 None:intergenic 50.0%
ACAAGAGAGGCTCTTTCCCT+AGG - chr1_2:52303460-52303479 Msa0076320:intron 50.0%
CAGTTGGCATTTGCTCTCCT+AGG + chr1_2:52303480-52303499 None:intergenic 50.0%
GGATCTTGGTCAAGCAAGCA+GGG - chr1_2:52303558-52303577 Msa0076320:intron 50.0%
GATCTTGGTCAAGCAAGCAG+GGG - chr1_2:52303559-52303578 Msa0076320:intron 50.0%
GGACCCAGCAAGCAACAATC+AGG - chr1_2:52301664-52301683 Msa0076320:three_prime_UTR 55.0%
CGCGTGCAGCAGTAACATTG+AGG + chr1_2:52301839-52301858 None:intergenic 55.0%
AATGTTACTGCTGCACGCGC+AGG - chr1_2:52301840-52301859 Msa0076320:CDS 55.0%
TTGGTCCTGGTCCAGTGGAA+AGG - chr1_2:52303387-52303406 Msa0076320:intron 55.0%
GGGATCTTGGTCAAGCAAGC+AGG - chr1_2:52303557-52303576 Msa0076320:intron 55.0%
GGACCCAGCAAGCAACAATC+AGG - chr1_2:52301664-52301683 Msa0076320:three_prime_UTR 55.0%
CGCGTGCAGCAGTAACATTG+AGG + chr1_2:52301839-52301858 None:intergenic 55.0%
AATGTTACTGCTGCACGCGC+AGG - chr1_2:52301840-52301859 Msa0076320:CDS 55.0%
TTGGTCCTGGTCCAGTGGAA+AGG - chr1_2:52303387-52303406 Msa0076320:intron 55.0%
GGGATCTTGGTCAAGCAAGC+AGG - chr1_2:52303557-52303576 Msa0076320:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52301586 52303848 52301586 ID=Msa0076320;Name=Msa0076320
chr1_2 mRNA 52301586 52303848 52301586 ID=Msa0076320-mRNA-1;Parent=Msa0076320;Name=Msa0076320-mRNA-1;_AED=0.28;_eAED=0.28;_QI=187|1|1|1|0.5|0.33|3|197|158
chr1_2 exon 52301586 52302168 52301586 ID=Msa0076320-mRNA-1:exon:16192;Parent=Msa0076320-mRNA-1
chr1_2 exon 52303231 52303347 52303231 ID=Msa0076320-mRNA-1:exon:16191;Parent=Msa0076320-mRNA-1
chr1_2 exon 52303688 52303848 52303688 ID=Msa0076320-mRNA-1:exon:16190;Parent=Msa0076320-mRNA-1
chr1_2 five_prime_UTR 52303688 52303848 52303688 ID=Msa0076320-mRNA-1:five_prime_utr;Parent=Msa0076320-mRNA-1
chr1_2 five_prime_UTR 52303322 52303347 52303322 ID=Msa0076320-mRNA-1:five_prime_utr;Parent=Msa0076320-mRNA-1
chr1_2 CDS 52303231 52303321 52303231 ID=Msa0076320-mRNA-1:cds;Parent=Msa0076320-mRNA-1
chr1_2 CDS 52301783 52302168 52301783 ID=Msa0076320-mRNA-1:cds;Parent=Msa0076320-mRNA-1
chr1_2 three_prime_UTR 52301586 52301782 52301586 ID=Msa0076320-mRNA-1:three_prime_utr;Parent=Msa0076320-mRNA-1
Gene Sequence

>Msa0076320

ATGAAGAGGACAATGCCATGGAGTGATGATGATGATGACTCATCTTCAGACTCTGAAAATGATAGTGAAACTGGAGCCAAAAAATCCAAAGGTAAATCTACAAAGCAGAAAAAGGCTCCAATTGACTTTGAAGCTCTGAAGCGATACGGCTATAAAGGCGGACCTTCAGTCTTAAAGGTACCTCCACCCAAAGAAGATGACACAAAGAAAGATTGGTCCTGGTCCAGTGGAAAGGAAAAACGCGTCGAGAAGGAAGTTGAAGAAACATATGAAGAGAGAAAGAAAACAAGAGAGGCTCTTTCCCTAGGAGAGCAAATGCCAACTGTTCTGACTAGGAATGACAAGAAGAATCTTTCCTTTTCTCAGAAGGAAAAGAAGAAAAGGGATCTTGGTCAAGCAAGCAGGGGCAAAAATTATGTTGAAGAAGAGAAAAGGCTGTTGAGGGACAATGGAGTTTATTCTGGTTTCGATTCTTGA

Protein sequence

>Msa0076320

MKRTMPWSDDDDDSSSDSENDSETGAKKSKGKSTKQKKAPIDFEALKRYGYKGGPSVLKVPPPKEDDTKKDWSWSSGKEKRVEKEVEETYEERKKTREALSLGEQMPTVLTRNDKKNLSFSQKEKKKRDLGQASRGKNYVEEEKRLLRDNGVYSGFDS*