AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090100 MtrunA17_Chr1g0209771 97.853 326 7 0 1 326 1 326 0.0 652
Msa0090100 MtrunA17_Chr6g0464791 55.128 234 105 0 1 234 1 234 1.67e-86 271
Msa0090100 MtrunA17_Chr8g0370931 53.030 198 93 0 7 204 21 218 8.73e-77 241
Msa0090100 MtrunA17_Chr6g0487991 51.269 197 96 0 7 203 1 197 4.03e-69 233
Msa0090100 MtrunA17_Chr4g0042021 32.827 329 202 7 7 325 1 320 4.55e-47 163
Msa0090100 MtrunA17_Chr1g0210081 39.779 181 108 1 4 183 5 185 2.12e-39 142
Msa0090100 MtrunA17_Chr2g0324121 40.120 167 100 0 14 180 11 177 2.04e-38 143
Msa0090100 MtrunA17_Chr7g0214961 39.024 164 100 0 13 176 8 171 3.52e-35 132
Msa0090100 MtrunA17_Chr2g0331801 32.941 170 105 1 15 184 12 172 1.88e-26 108
Msa0090100 MtrunA17_Chr4g0004491 30.531 226 144 6 13 238 13 225 1.97e-26 107
Msa0090100 MtrunA17_Chr8g0390551 28.415 183 121 2 3 185 1 173 3.91e-21 94.0
Msa0090100 MtrunA17_Chr6g0485461 28.947 228 143 4 2 220 56 273 3.43e-20 91.3
Msa0090100 MtrunA17_Chr7g0262101 27.742 155 107 2 30 184 35 184 2.96e-14 70.5
Msa0090100 MtrunA17_Chr7g0260911 29.126 103 73 0 96 198 4 106 2.82e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090100 AT1G25420.1 60.625 320 112 4 1 318 1 308 5.25e-125 361
Msa0090100 AT1G25420.4 59.386 293 105 4 28 318 1 281 4.92e-108 317
Msa0090100 AT1G34220.2 53.942 241 108 1 1 238 1 241 2.97e-87 274
Msa0090100 AT1G34220.1 47.970 271 108 2 1 238 1 271 9.31e-81 258
Msa0090100 AT1G25420.3 55.378 251 98 4 70 318 2 240 1.77e-79 243
Msa0090100 AT1G25420.2 55.378 251 98 4 70 318 2 240 1.77e-79 243
Msa0090100 AT4G35730.1 51.942 206 99 0 7 212 21 226 2.43e-76 241
Msa0090100 AT4G29440.1 45.604 182 99 0 4 185 1 182 1.94e-58 203
Msa0090100 AT2G19710.1 35.028 354 166 5 4 312 1 335 2.81e-58 202
Msa0090100 AT4G29440.2 48.366 153 79 0 33 185 2 154 7.58e-51 181
Msa0090100 AT1G13340.1 31.959 194 130 1 4 195 5 198 1.62e-32 125
Msa0090100 AT1G79910.1 31.694 183 115 2 3 185 1 173 2.17e-28 113
Msa0090100 AT2G14830.1 32.738 168 113 0 14 181 11 178 9.57e-28 111
Msa0090100 AT1G52315.1 28.571 175 115 3 13 186 10 175 5.22e-23 98.2
Msa0090100 AT1G79910.3 35.714 126 72 1 60 185 2 118 1.77e-22 96.3
Msa0090100 AT1G79910.2 36.585 123 69 1 63 185 46 159 4.13e-22 95.9
Msa0090100 AT4G32350.1 26.776 183 124 2 3 185 1 173 2.45e-20 92.4
Msa0090100 AT4G32350.3 26.776 183 124 2 3 185 1 173 2.45e-20 92.4
Msa0090100 AT1G52315.2 30.769 117 71 3 71 186 18 125 3.40e-16 78.2
Msa0090100 AT1G51900.1 32.278 158 100 3 26 178 25 180 5.17e-14 73.2
Msa0090100 AT3G15490.1 28.788 132 91 1 39 167 2 133 2.56e-13 68.6

Find 66 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATATCGTTTGAACAATT+TGG 0.136117 1_2:+71955210 Msa0090100:three_prime_UTR
AACTTGTTTACTACTAAATA+TGG 0.150771 1_2:+71953168 Msa0090100:CDS
ATGGGCTGCATATGAAATTT+TGG 0.213582 1_2:+71951098 Msa0090100:CDS
CTAAAACTGCAGCAGAATTT+AGG 0.215309 1_2:+71953466 Msa0090100:CDS
TACTTCTGACTCTCAATTAT+AGG 0.241660 1_2:-71951153 None:intergenic
TTCTTTCTAACAATAATTCT+TGG 0.251948 1_2:+71954806 Msa0090100:CDS
ATTTCAATCCTCTGATATAT+TGG 0.254871 1_2:+71954903 Msa0090100:CDS
TCATTCGAGAACAAAATATA+TGG 0.266370 1_2:+71951079 Msa0090100:CDS
AGAGTTGATCTTAACTTTGT+AGG 0.321245 1_2:-71955352 None:intergenic
TCTGAACTTCGTCCTGATTC+AGG 0.335446 1_2:+71953213 Msa0090100:CDS
TTATATCGTTTGAACAATTT+GGG 0.336633 1_2:+71955211 Msa0090100:three_prime_UTR
GAATAAGATTAATAGTAATA+AGG 0.375288 1_2:-71955628 None:intergenic
ATTACTCGAATTCTAGCAAT+TGG 0.384530 1_2:-71950964 None:intergenic
CAACGGAACTTTGATGTGCT+TGG 0.386027 1_2:+71955269 Msa0090100:three_prime_UTR
CGTTGTGTTCACCCCATGTC+AGG 0.397155 1_2:-71955251 None:intergenic
GTGCGATTCACGCCTGAATC+AGG 0.402265 1_2:-71953225 None:intergenic
CTAAATCGATGAACTTTGCT+TGG 0.419542 1_2:+71955046 Msa0090100:three_prime_UTR
CTTTCAGTTAGTGCTCCATC+TGG 0.420640 1_2:+71953381 Msa0090100:CDS
TCACTTGCACATAGTGACTT+TGG 0.422099 1_2:+71954988 Msa0090100:CDS
TAGAAAGAATAGAAGCTTCA+AGG 0.433370 1_2:-71954792 None:intergenic
ACTTGTTTACTACTAAATAT+GGG 0.437025 1_2:+71953169 Msa0090100:CDS
TGCTACCAACAGAGAGAACT+TGG 0.442231 1_2:-71955322 None:intergenic
TTCTTGATGTGCAATAAGTC+TGG 0.476632 1_2:-71953147 None:intergenic
TTTGCTTGGTATCTCAAGGT+TGG 0.477044 1_2:+71955060 Msa0090100:three_prime_UTR
CATTCGAGAACAAAATATAT+GGG 0.494027 1_2:+71951080 Msa0090100:CDS
AGCGTGGTGATTTAGTTTCG+TGG 0.500125 1_2:+71950602 Msa0090100:five_prime_UTR
GTTCTCTCTGTTGGTAGCAA+TGG 0.504169 1_2:+71955326 Msa0090100:three_prime_UTR
TAAAGCCAAGTTCTCTCTGT+TGG 0.506407 1_2:+71955317 Msa0090100:three_prime_UTR
GATAAAACTCAAGGTCTTGA+CGG 0.511590 1_2:+71953407 Msa0090100:CDS
TGCACGATTTGCAGAAGCTA+TGG 0.518629 1_2:-71954941 None:intergenic
TGACTTTGGATCATTGAAGC+TGG 0.520410 1_2:+71955002 Msa0090100:CDS
GAACTTTGCTTGGTATCTCA+AGG 0.520612 1_2:+71955056 Msa0090100:three_prime_UTR
CAGAAGAATACAATCTAGCA+TGG 0.533676 1_2:+71953436 Msa0090100:CDS
TGCGTGAAATTGCGAGGTTG+AGG 0.541893 1_2:-71950858 None:intergenic
TAAGGTTACTTAATCTTCAA+CGG 0.542740 1_2:-71955610 None:intergenic
ATGGCTTCTCGCAATTCCGA+CGG 0.549527 1_2:-71953084 None:intergenic
CTTAATCAACTCTTTAGCAG+AGG 0.562495 1_2:+71950663 Msa0090100:CDS
GTTGATCTTAACTTTGTAGG+TGG 0.564479 1_2:-71955349 None:intergenic
ATCCTCTGATATATTGGAGA+AGG 0.565767 1_2:+71954909 Msa0090100:CDS
AAGTTAAATAATATGACTGA+TGG 0.570771 1_2:-71955494 None:intergenic
CACCTTGTAAATCCTGACAT+GGG 0.578194 1_2:+71955239 Msa0090100:three_prime_UTR
ACCCCATGTCAGGATTTACA+AGG 0.582262 1_2:-71955241 None:intergenic
ATCTGGAGAGATAAAACTCA+AGG 0.587410 1_2:+71953398 Msa0090100:CDS
ACAAAGTTAAGATCAACTCT+AGG 0.588749 1_2:+71955355 Msa0090100:three_prime_UTR
TGGCTTCTCGCAATTCCGAC+GGG 0.590920 1_2:-71953083 None:intergenic
TTTGGATCATTGAAGCTGGA+AGG 0.592273 1_2:+71955006 Msa0090100:CDS
GTACAGTAAATACCGCAGTA+AGG 0.599724 1_2:-71955096 None:intergenic
GGAGCAAAGCAAGTTGGTGT+CGG 0.600016 1_2:+71954664 Msa0090100:CDS
GCACCTTGTAAATCCTGACA+TGG 0.600463 1_2:+71955238 Msa0090100:three_prime_UTR
CAGGGTGGAGCAAAGCAAGT+TGG 0.607429 1_2:+71954658 Msa0090100:intron
CAATTATAGGTACACGTGCA+AGG 0.612342 1_2:-71951140 None:intergenic
CATACTGAATCGATTTAGCA+AGG 0.613662 1_2:-71955409 None:intergenic
ACGATTTGCAGAAGCTATGG+CGG 0.619875 1_2:-71954938 None:intergenic
ATATGACTGATGGTAAAACA+TGG 0.625788 1_2:-71955484 None:intergenic
TCTTGCATTGAGCCCATCGT+AGG 0.629156 1_2:-71955446 None:intergenic
AGCCTTCTCCAATATATCAG+AGG 0.634844 1_2:-71954911 None:intergenic
ACTTCATGCGTGAAATTGCG+AGG 0.641498 1_2:-71950864 None:intergenic
AGAAGAATACAATCTAGCAT+GGG 0.650670 1_2:+71953437 Msa0090100:CDS
TCAACTCAAACAAATGCGGA+AGG 0.653130 1_2:+71950909 Msa0090100:CDS
ACATAATAGGGAATGCCCGT+CGG 0.666817 1_2:+71953068 Msa0090100:intron
ACCTTGTAAATCCTGACATG+GGG 0.668070 1_2:+71955240 Msa0090100:three_prime_UTR
TGATCTGAGGAAGCAAAGCG+TGG 0.683836 1_2:+71950586 Msa0090100:five_prime_UTR
CTGACATGGGGTGAACACAA+CGG 0.685230 1_2:+71955252 Msa0090100:three_prime_UTR
ATGTTCAACTCAAACAAATG+CGG 0.693836 1_2:+71950905 Msa0090100:CDS
TCTGGTATATCAGAACACCT+AGG 0.708437 1_2:-71953129 None:intergenic
ACATTGTTAAGACCTTACTG+CGG 0.792534 1_2:+71955084 Msa0090100:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTTTTTTTATCTAAAT+AGG - chr1_2:71951677-71951696 None:intergenic 10.0%
!!! AGTAACAAAATAAAATTTTA+AGG - chr1_2:71952641-71952660 None:intergenic 10.0%
!! TAATATCAAAAAATATATAC+TGG - chr1_2:71953340-71953359 None:intergenic 10.0%
!! AATAACAATAATAAATGAAA+TGG - chr1_2:71954412-71954431 None:intergenic 10.0%
!!! ATGTGTATTTATTTTTATAA+TGG + chr1_2:71955188-71955207 Msa0090100:three_prime_UTR 10.0%
!! TAATTAAGAAACATGTAATT+GGG - chr1_2:71950773-71950792 None:intergenic 15.0%
!! TTAATTAAGAAACATGTAAT+TGG - chr1_2:71950774-71950793 None:intergenic 15.0%
!! ATTAAAACAAAATCTAATGA+TGG - chr1_2:71950801-71950820 None:intergenic 15.0%
!!! TTAATGTTTCTGAATTTAAA+TGG + chr1_2:71951450-71951469 Msa0090100:intron 15.0%
!!! CAAAATAAAATTTTAAGGTT+TGG - chr1_2:71952636-71952655 None:intergenic 15.0%
!! GAATAAGATTAATAGTAATA+AGG - chr1_2:71955631-71955650 None:intergenic 15.0%
!! TTAAATGGTGTAAAACATTA+AGG + chr1_2:71951465-71951484 Msa0090100:intron 20.0%
!! TTGATTTAGATAAAATCTTG+AGG + chr1_2:71951510-71951529 Msa0090100:intron 20.0%
!! TGATTTAGATAAAATCTTGA+GGG + chr1_2:71951511-71951530 Msa0090100:intron 20.0%
!!! TACAAGTTTGATCTTTTAAA+TGG + chr1_2:71951628-71951647 Msa0090100:intron 20.0%
!! TAAGTTTCATGAAATTGTTT+GGG - chr1_2:71951888-71951907 None:intergenic 20.0%
!! ATAAGTTTCATGAAATTGTT+TGG - chr1_2:71951889-71951908 None:intergenic 20.0%
!! TTATTCTTATATGTATGTGT+AGG - chr1_2:71952086-71952105 None:intergenic 20.0%
!!! TAACTTATTTTAATGTTGTG+AGG - chr1_2:71952134-71952153 None:intergenic 20.0%
!! TAAAACACAAACTACTTTAT+GGG - chr1_2:71952735-71952754 None:intergenic 20.0%
!! ATAAAACACAAACTACTTTA+TGG - chr1_2:71952736-71952755 None:intergenic 20.0%
!!! TGTTTGAAATGATTTTCAAA+AGG + chr1_2:71952826-71952845 Msa0090100:intron 20.0%
!!! TTTTTCACTTATTTCAAACT+TGG + chr1_2:71952888-71952907 Msa0090100:intron 20.0%
!!! TTTTCACTTATTTCAAACTT+GGG + chr1_2:71952889-71952908 Msa0090100:intron 20.0%
!!! GGACGTATTTATAATTTTAT+AGG + chr1_2:71952910-71952929 Msa0090100:intron 20.0%
!!! TATAATTTTATAGGATGCTA+CGG + chr1_2:71952919-71952938 Msa0090100:intron 20.0%
!!! TACTTATTGAGTTTTTAAAC+AGG + chr1_2:71952977-71952996 Msa0090100:intron 20.0%
!!! AACTTGTTTACTACTAAATA+TGG + chr1_2:71953168-71953187 Msa0090100:CDS 20.0%
!! ACTTGTTTACTACTAAATAT+GGG + chr1_2:71953169-71953188 Msa0090100:CDS 20.0%
!! ATGAAATTTGCAATAATATC+CGG - chr1_2:71953689-71953708 None:intergenic 20.0%
!!! TTTTTACTTAGAATTTGAGT+TGG + chr1_2:71954013-71954032 Msa0090100:intron 20.0%
!!! TTTTACTTAGAATTTGAGTT+GGG + chr1_2:71954014-71954033 Msa0090100:intron 20.0%
!! TTCTTTCTAACAATAATTCT+TGG + chr1_2:71954806-71954825 Msa0090100:CDS 20.0%
!! TTATATCGTTTGAACAATTT+GGG + chr1_2:71955211-71955230 Msa0090100:three_prime_UTR 20.0%
!! AAGTTAAATAATATGACTGA+TGG - chr1_2:71955497-71955516 None:intergenic 20.0%
! GTTTCTAACAAAGAAGAAAT+CGG - chr1_2:71950717-71950736 None:intergenic 25.0%
! GTTAGAAACCTTCAAATTAT+TGG + chr1_2:71950728-71950747 Msa0090100:intron 25.0%
! TCAGAAATCCAATAATTTGA+AGG - chr1_2:71950739-71950758 None:intergenic 25.0%
!!! TGAATTGCGTTGTTTTAATT+AGG + chr1_2:71951047-71951066 Msa0090100:intron 25.0%
! TCATTCGAGAACAAAATATA+TGG + chr1_2:71951079-71951098 Msa0090100:CDS 25.0%
! CATTCGAGAACAAAATATAT+GGG + chr1_2:71951080-71951099 Msa0090100:CDS 25.0%
! TCTTAAATGTCTGTTCTTAT+TGG + chr1_2:71951186-71951205 Msa0090100:intron 25.0%
! AGTTTGAACTGAAAATAAAG+AGG - chr1_2:71951375-71951394 None:intergenic 25.0%
!!! ATTATTTCTGAATCTTCATG+AGG + chr1_2:71951412-71951431 Msa0090100:intron 25.0%
!!! TTATTTCTGAATCTTCATGA+GGG + chr1_2:71951413-71951432 Msa0090100:intron 25.0%
! AATTTATGTGTTCTTGAGTA+TGG + chr1_2:71951545-71951564 Msa0090100:intron 25.0%
!! GAAAAAAAGTATGAAACAGA+AGG + chr1_2:71951599-71951618 Msa0090100:intron 25.0%
!! TTGATCTTTTAAATGGACAT+AGG + chr1_2:71951635-71951654 Msa0090100:intron 25.0%
!!! ATAAGCTATTTCTATAGCAA+AGG + chr1_2:71951735-71951754 Msa0090100:intron 25.0%
! GCTGAAAAAATTTCAATGAA+TGG - chr1_2:71952866-71952885 None:intergenic 25.0%
! AGCAAAAATTATACTTGCAA+TGG - chr1_2:71953106-71953125 None:intergenic 25.0%
!!! TTTTTCTTAGAATTTGGGTT+TGG + chr1_2:71953820-71953839 Msa0090100:intron 25.0%
!!! TTTTCTTAGAATTTGGGTTT+GGG + chr1_2:71953821-71953840 Msa0090100:intron 25.0%
!!! ATTTACAAGCCAGTTTTATA+GGG - chr1_2:71953859-71953878 None:intergenic 25.0%
!!! AATTTACAAGCCAGTTTTAT+AGG - chr1_2:71953860-71953879 None:intergenic 25.0%
!!! TATAAAACTGGCTTGTAAAT+TGG + chr1_2:71953859-71953878 Msa0090100:intron 25.0%
! AAAAACCAATGAGTTAAGTT+AGG - chr1_2:71954247-71954266 None:intergenic 25.0%
! ACAAGGAACATGATATTAAA+TGG - chr1_2:71954316-71954335 None:intergenic 25.0%
! CATAATCATGTTGTATGAAA+AGG - chr1_2:71954377-71954396 None:intergenic 25.0%
! ATTACAAGCTGAAAAACTAT+TGG - chr1_2:71954725-71954744 None:intergenic 25.0%
!!! TAGTTTTTCAGCTTGTAATA+CGG + chr1_2:71954726-71954745 Msa0090100:CDS 25.0%
!!! CAGTTTTAGTATCATTGAAT+TGG - chr1_2:71954876-71954895 None:intergenic 25.0%
! ATTTCAATCCTCTGATATAT+TGG + chr1_2:71954903-71954922 Msa0090100:CDS 25.0%
! GTTATATCGTTTGAACAATT+TGG + chr1_2:71955210-71955229 Msa0090100:three_prime_UTR 25.0%
! TAAGGTTACTTAATCTTCAA+CGG - chr1_2:71955613-71955632 None:intergenic 25.0%
GTGTGTCTAAGAAAAAAAGA+AGG + chr1_2:71950563-71950582 Msa0090100:five_prime_UTR 30.0%
ATGTTCAACTCAAACAAATG+CGG + chr1_2:71950905-71950924 Msa0090100:CDS 30.0%
ATTACTCGAATTCTAGCAAT+TGG - chr1_2:71950967-71950986 None:intergenic 30.0%
! GAGTAATCCTTCAAATCTTT+TGG + chr1_2:71950980-71950999 Msa0090100:intron 30.0%
CAATTCACCAAAAGATTTGA+AGG - chr1_2:71950990-71951009 None:intergenic 30.0%
!!! ATTGCGTTGTTTTAATTAGG+TGG + chr1_2:71951050-71951069 Msa0090100:intron 30.0%
TACTTCTGACTCTCAATTAT+AGG - chr1_2:71951156-71951175 None:intergenic 30.0%
CTATACAAATCAGTACAGAA+TGG + chr1_2:71951342-71951361 Msa0090100:intron 30.0%
!!! TCACTTTTTAGCACATCAAA+TGG - chr1_2:71951572-71951591 None:intergenic 30.0%
ATTTGATGTGCTAAAAAGTG+AGG + chr1_2:71951571-71951590 Msa0090100:intron 30.0%
ACATAGGCAGAATAGATTTA+GGG + chr1_2:71951651-71951670 Msa0090100:intron 30.0%
! GCTTATTTGAGTTTATCTAG+TGG - chr1_2:71951913-71951932 None:intergenic 30.0%
ACTCATAAGATTCTACCATT+GGG + chr1_2:71952036-71952055 Msa0090100:intron 30.0%
ATAATTACAAGTTTGCCCAA+TGG - chr1_2:71952054-71952073 None:intergenic 30.0%
!! GTTATTTTGTTCATCTGTGA+TGG - chr1_2:71952112-71952131 None:intergenic 30.0%
GTTATGAACATCTTGAATGA+TGG - chr1_2:71952172-71952191 None:intergenic 30.0%
! AGATCAGATTATGTCTTTTG+AGG - chr1_2:71952221-71952240 None:intergenic 30.0%
!!! AATTTTAAGGTTTGGTCCTA+CGG - chr1_2:71952628-71952647 None:intergenic 30.0%
GCACAGGATAATATATTGTT+CGG - chr1_2:71952676-71952695 None:intergenic 30.0%
CCTTCATTCTCTACATAATA+GGG + chr1_2:71953056-71953075 Msa0090100:intron 30.0%
CTGTGAGTTATCTTTAGTTA+TGG + chr1_2:71953247-71953266 Msa0090100:intron 30.0%
AGAAGAATACAATCTAGCAT+GGG + chr1_2:71953437-71953456 Msa0090100:CDS 30.0%
GAAAAATCATGAAGATCTAC+TGG + chr1_2:71953488-71953507 Msa0090100:CDS 30.0%
! AATTTTATGTCCAACAGTGA+AGG - chr1_2:71953546-71953565 None:intergenic 30.0%
GATAGATGCAAGATATCATA+AGG - chr1_2:71953587-71953606 None:intergenic 30.0%
CATCTATCATCAATTGTAGT+TGG + chr1_2:71953599-71953618 Msa0090100:intron 30.0%
AAATTTCCTCTTATATCTGC+AGG + chr1_2:71953795-71953814 Msa0090100:intron 30.0%
AATTTCCTCTTATATCTGCA+GGG + chr1_2:71953796-71953815 Msa0090100:intron 30.0%
!! AGGGCTTTTTCTTAGAATTT+GGG + chr1_2:71953815-71953834 Msa0090100:intron 30.0%
!! TTTACAAGCCAGTTTTATAG+GGG - chr1_2:71953858-71953877 None:intergenic 30.0%
TATGAAAACGTGGTTATAAG+TGG - chr1_2:71953895-71953914 None:intergenic 30.0%
AAATATCCTTGTATATCTGC+AGG + chr1_2:71953988-71954007 Msa0090100:intron 30.0%
!!! CATACAAGCTAGTTTTATAG+GGG - chr1_2:71954051-71954070 None:intergenic 30.0%
!!! CCATACAAGCTAGTTTTATA+GGG - chr1_2:71954052-71954071 None:intergenic 30.0%
!!! ACCATACAAGCTAGTTTTAT+AGG - chr1_2:71954053-71954072 None:intergenic 30.0%
AAGAAACACATTAAGATGCA+TGG - chr1_2:71954280-71954299 None:intergenic 30.0%
! AAGCTACATTCTAGAAAACA+AGG - chr1_2:71954333-71954352 None:intergenic 30.0%
CAAACTACAGTGAAGTATAT+TGG - chr1_2:71954561-71954580 None:intergenic 30.0%
TACTTCTCAACTGTAGTATA+AGG + chr1_2:71954586-71954605 Msa0090100:intron 30.0%
! ATTTTCTCATATTACCTGCA+GGG + chr1_2:71954640-71954659 Msa0090100:intron 30.0%
!!! CTATTGGAATTGTTTTTGCT+GGG - chr1_2:71954709-71954728 None:intergenic 30.0%
!!! ACTATTGGAATTGTTTTTGC+TGG - chr1_2:71954710-71954729 None:intergenic 30.0%
TAGAAAGAATAGAAGCTTCA+AGG - chr1_2:71954795-71954814 None:intergenic 30.0%
! AGAGTTGATCTTAACTTTGT+AGG - chr1_2:71955355-71955374 None:intergenic 30.0%
ACAAAGTTAAGATCAACTCT+AGG + chr1_2:71955355-71955374 Msa0090100:three_prime_UTR 30.0%
ATATGACTGATGGTAAAACA+TGG - chr1_2:71955487-71955506 None:intergenic 30.0%
GAAAAAAAGAAGGTGATCTG+AGG + chr1_2:71950573-71950592 Msa0090100:five_prime_UTR 35.0%
CTTAATCAACTCTTTAGCAG+AGG + chr1_2:71950663-71950682 Msa0090100:CDS 35.0%
! CATATAGTCAGTAAAAGTGC+AGG - chr1_2:71951023-71951042 None:intergenic 35.0%
!! ATGGGCTGCATATGAAATTT+TGG + chr1_2:71951098-71951117 Msa0090100:CDS 35.0%
GAACAGACATTTAAGAGCTA+TGG - chr1_2:71951182-71951201 None:intergenic 35.0%
GACATAGGCAGAATAGATTT+AGG + chr1_2:71951650-71951669 Msa0090100:intron 35.0%
GACTCATAAGATTCTACCAT+TGG + chr1_2:71952035-71952054 Msa0090100:intron 35.0%
GTTACTTACGAACTTAGTCT+TGG - chr1_2:71952197-71952216 None:intergenic 35.0%
ATGGTAGGATTGTTTCATGT+TGG - chr1_2:71952477-71952496 None:intergenic 35.0%
CATATATTCAATGTTGCAGC+TGG - chr1_2:71952805-71952824 None:intergenic 35.0%
TGAAGGCTTAGAGTTTGATT+AGG - chr1_2:71953042-71953061 None:intergenic 35.0%
GCCTTCATTCTCTACATAAT+AGG + chr1_2:71953055-71953074 Msa0090100:intron 35.0%
CCCTATTATGTAGAGAATGA+AGG - chr1_2:71953059-71953078 None:intergenic 35.0%
! GTATAATTTTTGCTGCTCCT+AGG + chr1_2:71953112-71953131 Msa0090100:CDS 35.0%
TTCTTGATGTGCAATAAGTC+TGG - chr1_2:71953150-71953169 None:intergenic 35.0%
AAACACCAAACAATTTGCAC+TGG + chr1_2:71953282-71953301 Msa0090100:intron 35.0%
ATACTCCAGTGCAAATTGTT+TGG - chr1_2:71953290-71953309 None:intergenic 35.0%
!! TTGAGTTTTATCTCTCCAGA+TGG - chr1_2:71953399-71953418 None:intergenic 35.0%
ATCTGGAGAGATAAAACTCA+AGG + chr1_2:71953398-71953417 Msa0090100:CDS 35.0%
GATAAAACTCAAGGTCTTGA+CGG + chr1_2:71953407-71953426 Msa0090100:CDS 35.0%
CAGAAGAATACAATCTAGCA+TGG + chr1_2:71953436-71953455 Msa0090100:CDS 35.0%
CTAAAACTGCAGCAGAATTT+AGG + chr1_2:71953466-71953485 Msa0090100:CDS 35.0%
ACTAATTCTTCCTTCACTGT+TGG + chr1_2:71953533-71953552 Msa0090100:intron 35.0%
!! CAGGGCTTTTTCTTAGAATT+TGG + chr1_2:71953814-71953833 Msa0090100:intron 35.0%
!! TTACAAGCCAGTTTTATAGG+GGG - chr1_2:71953857-71953876 None:intergenic 35.0%
AAAAGTCCTGCAGATATACA+AGG - chr1_2:71953997-71954016 None:intergenic 35.0%
! CCCTATAAAACTAGCTTGTA+TGG + chr1_2:71954049-71954068 Msa0090100:intron 35.0%
! TAAAACTAGCTTGTATGGTG+AGG + chr1_2:71954054-71954073 Msa0090100:intron 35.0%
ACTGGATGAGATTCAAAACT+TGG - chr1_2:71954098-71954117 None:intergenic 35.0%
! GCCATCTTAGAATTTGAGTT+AGG + chr1_2:71954221-71954240 Msa0090100:intron 35.0%
! GCCTAACTCAAATTCTAAGA+TGG - chr1_2:71954225-71954244 None:intergenic 35.0%
TTAGGCCTAACTTAACTCAT+TGG + chr1_2:71954239-71954258 Msa0090100:intron 35.0%
CATGATATTAAATGGCATCG+TGG - chr1_2:71954308-71954327 None:intergenic 35.0%
TGGACACGTAAATGTATCAA+CGG - chr1_2:71954541-71954560 None:intergenic 35.0%
! GATTTTCTCATATTACCTGC+AGG + chr1_2:71954639-71954658 Msa0090100:intron 35.0%
ATCCTCTGATATATTGGAGA+AGG + chr1_2:71954909-71954928 Msa0090100:CDS 35.0%
CTAAATCGATGAACTTTGCT+TGG + chr1_2:71955046-71955065 Msa0090100:three_prime_UTR 35.0%
ACATTGTTAAGACCTTACTG+CGG + chr1_2:71955084-71955103 Msa0090100:three_prime_UTR 35.0%
GTTGATCTTAACTTTGTAGG+TGG - chr1_2:71955352-71955371 None:intergenic 35.0%
! GAGAAATATTTTCTGAGCGA+AGG + chr1_2:71955377-71955396 Msa0090100:three_prime_UTR 35.0%
! CATACTGAATCGATTTAGCA+AGG - chr1_2:71955412-71955431 None:intergenic 35.0%
!!! CGTTTTTTCTACTCGTTGGT+GGG + chr1_2:71950686-71950705 Msa0090100:intron 40.0%
TCAACTCAAACAAATGCGGA+AGG + chr1_2:71950909-71950928 Msa0090100:CDS 40.0%
! GGAGATTTCCCAATTTTTGC+AGG + chr1_2:71950930-71950949 Msa0090100:CDS 40.0%
! ATTTCCCAATTTTTGCAGGC+TGG + chr1_2:71950934-71950953 Msa0090100:CDS 40.0%
TTGACCAGCCTGCAAAAATT+GGG - chr1_2:71950941-71950960 None:intergenic 40.0%
CAATTATAGGTACACGTGCA+AGG - chr1_2:71951143-71951162 None:intergenic 40.0%
TACAGAAAGTGATCACTCTG+TGG - chr1_2:71951292-71951311 None:intergenic 40.0%
TTGTGCAAGATTGTGAAGCA+TGG - chr1_2:71951318-71951337 None:intergenic 40.0%
TGTGCTAAAAAGTGAGGAAC+TGG + chr1_2:71951577-71951596 Msa0090100:intron 40.0%
ATCCACACCACAATGAAAAC+AGG + chr1_2:71952260-71952279 Msa0090100:intron 40.0%
TCCACACCACAATGAAAACA+GGG + chr1_2:71952261-71952280 Msa0090100:intron 40.0%
! AACTTCCCCTGTTTTCATTG+TGG - chr1_2:71952270-71952289 None:intergenic 40.0%
ACGCCTTGTGATAGAAAACA+AGG + chr1_2:71952293-71952312 Msa0090100:intron 40.0%
!!! CGACCTTGTTTTCTATCACA+AGG - chr1_2:71952299-71952318 None:intergenic 40.0%
GAAAACAAGGTCGAAGAGAA+CGG + chr1_2:71952306-71952325 Msa0090100:intron 40.0%
TTCATGCGTTTAAAAAGCCC+AGG + chr1_2:71952400-71952419 Msa0090100:intron 40.0%
TCATGCGTTTAAAAAGCCCA+GGG + chr1_2:71952401-71952420 Msa0090100:intron 40.0%
! TTGGCCATCCATTTTGCAAT+GGG - chr1_2:71952458-71952477 None:intergenic 40.0%
ATCATTGGAGATCGTTGTTG+TGG - chr1_2:71952515-71952534 None:intergenic 40.0%
TTGTCTGTGTATGTTGACGT+TGG + chr1_2:71952757-71952776 Msa0090100:intron 40.0%
TCTGGTATATCAGAACACCT+AGG - chr1_2:71953132-71953151 None:intergenic 40.0%
TTGCAATAATATCCGGTGAC+AGG - chr1_2:71953682-71953701 None:intergenic 40.0%
! ATCATGAGGCAAGGAGTATA+AGG - chr1_2:71953717-71953736 None:intergenic 40.0%
GGAAAAACTGACACATCATG+AGG - chr1_2:71953731-71953750 None:intergenic 40.0%
AAAAGCCCTGCAGATATAAG+AGG - chr1_2:71953804-71953823 None:intergenic 40.0%
!! TACAAGCCAGTTTTATAGGG+GGG - chr1_2:71953856-71953875 None:intergenic 40.0%
AGGACTGAGATATGAAAACG+TGG - chr1_2:71953905-71953924 None:intergenic 40.0%
ATAAGTGACTCTAGCTGTGT+GGG + chr1_2:71953955-71953974 Msa0090100:intron 40.0%
!! CTTAGAATTTGAGTTGGGTC+TGG + chr1_2:71954019-71954038 Msa0090100:intron 40.0%
CAGAATCAAGTAGTGAGAAC+GGG - chr1_2:71954462-71954481 None:intergenic 40.0%
CCAGAATCAAGTAGTGAGAA+CGG - chr1_2:71954463-71954482 None:intergenic 40.0%
TTCTCACTACTTGATTCTGG+TGG + chr1_2:71954463-71954482 Msa0090100:intron 40.0%
AGCCTTCTCCAATATATCAG+AGG - chr1_2:71954914-71954933 None:intergenic 40.0%
TCACTTGCACATAGTGACTT+TGG + chr1_2:71954988-71955007 Msa0090100:CDS 40.0%
TGACTTTGGATCATTGAAGC+TGG + chr1_2:71955002-71955021 Msa0090100:CDS 40.0%
TTTGGATCATTGAAGCTGGA+AGG + chr1_2:71955006-71955025 Msa0090100:CDS 40.0%
GAACTTTGCTTGGTATCTCA+AGG + chr1_2:71955056-71955075 Msa0090100:three_prime_UTR 40.0%
TTTGCTTGGTATCTCAAGGT+TGG + chr1_2:71955060-71955079 Msa0090100:three_prime_UTR 40.0%
GTACAGTAAATACCGCAGTA+AGG - chr1_2:71955099-71955118 None:intergenic 40.0%
CACCTTGTAAATCCTGACAT+GGG + chr1_2:71955239-71955258 Msa0090100:three_prime_UTR 40.0%
ACCTTGTAAATCCTGACATG+GGG + chr1_2:71955240-71955259 Msa0090100:three_prime_UTR 40.0%
TAAAGCCAAGTTCTCTCTGT+TGG + chr1_2:71955317-71955336 Msa0090100:three_prime_UTR 40.0%
!!! TGTTTTTTCGTGCCTACGAT+GGG + chr1_2:71955434-71955453 Msa0090100:three_prime_UTR 40.0%
! AGCGTGGTGATTTAGTTTCG+TGG + chr1_2:71950602-71950621 Msa0090100:five_prime_UTR 45.0%
!!! GAGGCGTTTTTTCTACTCGT+TGG + chr1_2:71950682-71950701 Msa0090100:CDS 45.0%
!!! GCGTTTTTTCTACTCGTTGG+TGG + chr1_2:71950685-71950704 Msa0090100:intron 45.0%
ACTTCATGCGTGAAATTGCG+AGG - chr1_2:71950867-71950886 None:intergenic 45.0%
CTTGACCAGCCTGCAAAAAT+TGG - chr1_2:71950942-71950961 None:intergenic 45.0%
! CTCTAAGGGTCTGCTTTGAT+TGG - chr1_2:71951935-71951954 None:intergenic 45.0%
AAAGCAGACCCTTAGAGATG+AGG + chr1_2:71951938-71951957 Msa0090100:intron 45.0%
! TACACTGGCCTCATCTCTAA+GGG - chr1_2:71951949-71951968 None:intergenic 45.0%
TCAAACACGAGGTCCTACAT+AGG + chr1_2:71951970-71951989 Msa0090100:intron 45.0%
AGGTCCTACATAGGATTGGA+AGG + chr1_2:71951979-71951998 Msa0090100:intron 45.0%
GGTCCTACATAGGATTGGAA+GGG + chr1_2:71951980-71951999 Msa0090100:intron 45.0%
GTCCTACATAGGATTGGAAG+GGG + chr1_2:71951981-71952000 Msa0090100:intron 45.0%
TCCTACATAGGATTGGAAGG+GGG + chr1_2:71951982-71952001 Msa0090100:intron 45.0%
CCACACCACAATGAAAACAG+GGG + chr1_2:71952262-71952281 Msa0090100:intron 45.0%
GAACAGGGCATAAAGGACAA+CGG + chr1_2:71952348-71952367 Msa0090100:intron 45.0%
AACAGGGCATAAAGGACAAC+GGG + chr1_2:71952349-71952368 Msa0090100:intron 45.0%
! AAGGGTTTTGCGAAAACCCT+GGG - chr1_2:71952420-71952439 None:intergenic 45.0%
AAGGCCCATTGCAAAATGGA+TGG + chr1_2:71952451-71952470 Msa0090100:intron 45.0%
! GTTGGCCATCCATTTTGCAA+TGG - chr1_2:71952459-71952478 None:intergenic 45.0%
TGTGATGCAGGCAAGATCAT+TGG - chr1_2:71952530-71952549 None:intergenic 45.0%
ATGGTAACATGCTGTGATGC+AGG - chr1_2:71952542-71952561 None:intergenic 45.0%
TGCATCACAGCATGTTACCA+TGG + chr1_2:71952541-71952560 Msa0090100:intron 45.0%
ACAGCATGTTACCATGGTCA+TGG + chr1_2:71952547-71952566 Msa0090100:intron 45.0%
TCAAAATCACGAGGTCACGT+AGG - chr1_2:71952591-71952610 None:intergenic 45.0%
CCAAGGTAGTCAAAATCACG+AGG - chr1_2:71952600-71952619 None:intergenic 45.0%
!!! CCTCGTGATTTTGACTACCT+TGG + chr1_2:71952597-71952616 Msa0090100:intron 45.0%
! GTTTTGCCTGTGTTGTACCT+CGG + chr1_2:71952697-71952716 Msa0090100:intron 45.0%
ATTCAATGTTGCAGCTGGAG+TGG - chr1_2:71952800-71952819 None:intergenic 45.0%
ACATAATAGGGAATGCCCGT+CGG + chr1_2:71953068-71953087 Msa0090100:intron 45.0%
TCTGAACTTCGTCCTGATTC+AGG + chr1_2:71953213-71953232 Msa0090100:CDS 45.0%
CTTTCAGTTAGTGCTCCATC+TGG + chr1_2:71953381-71953400 Msa0090100:CDS 45.0%
TTCATCCTTGATCCTGTCAC+CGG + chr1_2:71953667-71953686 Msa0090100:intron 45.0%
AATATCCGGTGACAGGATCA+AGG - chr1_2:71953675-71953694 None:intergenic 45.0%
AACTGACACATCATGAGGCA+AGG - chr1_2:71953726-71953745 None:intergenic 45.0%
GAGTCACTTATCAATGCTCG+TGG - chr1_2:71953946-71953965 None:intergenic 45.0%
GATAAGTGACTCTAGCTGTG+TGG + chr1_2:71953954-71953973 Msa0090100:intron 45.0%
GTGTGTTAAGAGTCTCACAC+TGG - chr1_2:71954116-71954135 None:intergenic 45.0%
!! AGATGTCCAGTTTGGTGTGA+GGG - chr1_2:71954141-71954160 None:intergenic 45.0%
CCGTTCTCACTACTTGATTC+TGG + chr1_2:71954460-71954479 Msa0090100:intron 45.0%
ACCTGTAGCATGTCAATCAC+TGG + chr1_2:71954496-71954515 Msa0090100:intron 45.0%
ACCAGTGATTGACATGCTAC+AGG - chr1_2:71954500-71954519 None:intergenic 45.0%
TTCTCATATTACCTGCAGGG+TGG + chr1_2:71954643-71954662 Msa0090100:intron 45.0%
ACGATTTGCAGAAGCTATGG+CGG - chr1_2:71954941-71954960 None:intergenic 45.0%
TGCACGATTTGCAGAAGCTA+TGG - chr1_2:71954944-71954963 None:intergenic 45.0%
GCACCTTGTAAATCCTGACA+TGG + chr1_2:71955238-71955257 Msa0090100:three_prime_UTR 45.0%
ACCCCATGTCAGGATTTACA+AGG - chr1_2:71955244-71955263 None:intergenic 45.0%
CAACGGAACTTTGATGTGCT+TGG + chr1_2:71955269-71955288 Msa0090100:three_prime_UTR 45.0%
TGCTACCAACAGAGAGAACT+TGG - chr1_2:71955325-71955344 None:intergenic 45.0%
!! GTTCTCTCTGTTGGTAGCAA+TGG + chr1_2:71955326-71955345 Msa0090100:three_prime_UTR 45.0%
!!! GTGTTTTTTCGTGCCTACGA+TGG + chr1_2:71955433-71955452 Msa0090100:three_prime_UTR 45.0%
TGATCTGAGGAAGCAAAGCG+TGG + chr1_2:71950586-71950605 Msa0090100:five_prime_UTR 50.0%
TGCGTGAAATTGCGAGGTTG+AGG - chr1_2:71950861-71950880 None:intergenic 50.0%
! CTACACTGGCCTCATCTCTA+AGG - chr1_2:71951950-71951969 None:intergenic 50.0%
GACCTCGTGTTTGACTACAC+TGG - chr1_2:71951964-71951983 None:intergenic 50.0%
CACGAGGTCCTACATAGGAT+TGG + chr1_2:71951975-71951994 Msa0090100:intron 50.0%
ACCCCCTTCCAATCCTATGT+AGG - chr1_2:71951986-71952005 None:intergenic 50.0%
! CCCCTGTTTTCATTGTGGTG+TGG - chr1_2:71952265-71952284 None:intergenic 50.0%
GAGGAGAGAACAGGGCATAA+AGG + chr1_2:71952341-71952360 Msa0090100:intron 50.0%
AACGGGAGAATGACGCAGTT+AGG + chr1_2:71952366-71952385 Msa0090100:intron 50.0%
! GAAGGGTTTTGCGAAAACCC+TGG - chr1_2:71952421-71952440 None:intergenic 50.0%
AAACCCTTCCCGTTTCAGCA+AGG + chr1_2:71952432-71952451 Msa0090100:intron 50.0%
TGCAATGGGCCTTGCTGAAA+CGG - chr1_2:71952444-71952463 None:intergenic 50.0%
CAGCAAGGCCCATTGCAAAA+TGG + chr1_2:71952447-71952466 Msa0090100:intron 50.0%
TCGAGATCGCGAGTTATGGT+AGG - chr1_2:71952492-71952511 None:intergenic 50.0%
TTACCATGGTCATGGATCGC+AGG + chr1_2:71952555-71952574 Msa0090100:intron 50.0%
CAACACAGGCAAAACAGCAC+AGG - chr1_2:71952692-71952711 None:intergenic 50.0%
TTTGCACCGAGGTACAACAC+AGG - chr1_2:71952706-71952725 None:intergenic 50.0%
! GTTGTACCTCGGTGCAAACA+TGG + chr1_2:71952708-71952727 Msa0090100:intron 50.0%
ATGGCTTCTCGCAATTCCGA+CGG - chr1_2:71953087-71953106 None:intergenic 50.0%
ATCAAGGATGAAGGTGGTCG+CGG - chr1_2:71953659-71953678 None:intergenic 50.0%
GACAGGATCAAGGATGAAGG+TGG - chr1_2:71953665-71953684 None:intergenic 50.0%
GGTGACAGGATCAAGGATGA+AGG - chr1_2:71953668-71953687 None:intergenic 50.0%
CCACAACTAGAGTCGCTTCT+CGG - chr1_2:71953761-71953780 None:intergenic 50.0%
AGCTCACCCCCCTATAAAAC+TGG + chr1_2:71953847-71953866 Msa0090100:intron 50.0%
GGTAGAGCTGTCACATCAAG+AGG - chr1_2:71953925-71953944 None:intergenic 50.0%
!! GATGTCCAGTTTGGTGTGAG+GGG - chr1_2:71954140-71954159 None:intergenic 50.0%
!! CAGATGTCCAGTTTGGTGTG+AGG - chr1_2:71954142-71954161 None:intergenic 50.0%
CTCACACCAAACTGGACATC+TGG + chr1_2:71954140-71954159 Msa0090100:intron 50.0%
!! GGAGCAAAGCAAGTTGGTGT+CGG + chr1_2:71954664-71954683 Msa0090100:CDS 50.0%
CTGACATGGGGTGAACACAA+CGG + chr1_2:71955252-71955271 Msa0090100:three_prime_UTR 50.0%
TCTTGCATTGAGCCCATCGT+AGG - chr1_2:71955449-71955468 None:intergenic 50.0%
GGCCAGTGTAGTCAAACACG+AGG + chr1_2:71951959-71951978 Msa0090100:intron 55.0%
GTCGAAGAGAACGGCGTAGA+GGG + chr1_2:71952315-71952334 Msa0090100:intron 55.0%
TCGAAGAGAACGGCGTAGAG+GGG + chr1_2:71952316-71952335 Msa0090100:intron 55.0%
GCAATGGGCCTTGCTGAAAC+GGG - chr1_2:71952443-71952462 None:intergenic 55.0%
GTGGTCGAGATCGCGAGTTA+TGG - chr1_2:71952496-71952515 None:intergenic 55.0%
GATCCTGCGATCCATGACCA+TGG - chr1_2:71952561-71952580 None:intergenic 55.0%
GACTACCTTGGATGAGCCGT+AGG + chr1_2:71952609-71952628 Msa0090100:intron 55.0%
TTGGTCCTACGGCTCATCCA+AGG - chr1_2:71952617-71952636 None:intergenic 55.0%
ATGGGTCCATGTTTGCACCG+AGG - chr1_2:71952717-71952736 None:intergenic 55.0%
TGGCTTCTCGCAATTCCGAC+GGG - chr1_2:71953086-71953105 None:intergenic 55.0%
GTGCGATTCACGCCTGAATC+AGG - chr1_2:71953228-71953247 None:intergenic 55.0%
TCAAGGATGAAGGTGGTCGC+GGG - chr1_2:71953658-71953677 None:intergenic 55.0%
CCGAGAAGCGACTCTAGTTG+TGG + chr1_2:71953758-71953777 Msa0090100:intron 55.0%
ACACACCCCTCACACCAAAC+TGG + chr1_2:71954132-71954151 Msa0090100:intron 55.0%
CAGGCTCCAGATGTCCAGTT+TGG - chr1_2:71954149-71954168 None:intergenic 55.0%
! CATCTGGAGCCTGATGCAAG+TGG + chr1_2:71954156-71954175 Msa0090100:intron 55.0%
GCTATCGAGCCACTTGCATC+AGG - chr1_2:71954168-71954187 None:intergenic 55.0%
GATGCAAGTGGCTCGATAGC+AGG + chr1_2:71954168-71954187 Msa0090100:intron 55.0%
CTCGATAGCAGGTGGTCTGA+TGG + chr1_2:71954179-71954198 Msa0090100:intron 55.0%
CAGGGTGGAGCAAAGCAAGT+TGG + chr1_2:71954658-71954677 Msa0090100:intron 55.0%
CGTTGTGTTCACCCCATGTC+AGG - chr1_2:71955254-71955273 None:intergenic 55.0%
GGTCGAAGAGAACGGCGTAG+AGG + chr1_2:71952314-71952333 Msa0090100:intron 60.0%
AAGAGAACGGCGTAGAGGGG+AGG + chr1_2:71952319-71952338 Msa0090100:intron 60.0%
AGAGGGGAGGAGGAGAGAAC+AGG + chr1_2:71952332-71952351 Msa0090100:intron 60.0%
GAGGGGAGGAGGAGAGAACA+GGG + chr1_2:71952333-71952352 Msa0090100:intron 60.0%
GGGCCTTGCTGAAACGGGAA+GGG - chr1_2:71952438-71952457 None:intergenic 60.0%
TGGGCCTTGCTGAAACGGGA+AGG - chr1_2:71952439-71952458 None:intergenic 60.0%
GCAAGTGGCTCGATAGCAGG+TGG + chr1_2:71954171-71954190 Msa0090100:intron 60.0%
CTTGCTTTGCTCCACCCTGC+AGG - chr1_2:71954657-71954676 None:intergenic 60.0%
AGAACGGCGTAGAGGGGAGG+AGG + chr1_2:71952322-71952341 Msa0090100:intron 65.0%
!! GAGTCGCTTCTCGGTGCTCG+TGG - chr1_2:71953752-71953771 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 71950538 71955663 71950538 ID=Msa0090100;Name=Msa0090100
chr1_2 mRNA 71950538 71955663 71950538 ID=Msa0090100-mRNA-1;Parent=Msa0090100;Name=Msa0090100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=116|1|1|1|0.8|0.83|6|622|326
chr1_2 exon 71950538 71950703 71950538 ID=Msa0090100-mRNA-1:exon:24893;Parent=Msa0090100-mRNA-1
chr1_2 exon 71950849 71950981 71950849 ID=Msa0090100-mRNA-1:exon:24894;Parent=Msa0090100-mRNA-1
chr1_2 exon 71951069 71951172 71951069 ID=Msa0090100-mRNA-1:exon:24895;Parent=Msa0090100-mRNA-1
chr1_2 exon 71953077 71953248 71953077 ID=Msa0090100-mRNA-1:exon:24896;Parent=Msa0090100-mRNA-1
chr1_2 exon 71953369 71953509 71953369 ID=Msa0090100-mRNA-1:exon:24897;Parent=Msa0090100-mRNA-1
chr1_2 exon 71954661 71955663 71954661 ID=Msa0090100-mRNA-1:exon:24898;Parent=Msa0090100-mRNA-1
chr1_2 five_prime_UTR 71950538 71950653 71950538 ID=Msa0090100-mRNA-1:five_prime_utr;Parent=Msa0090100-mRNA-1
chr1_2 CDS 71950654 71950703 71950654 ID=Msa0090100-mRNA-1:cds;Parent=Msa0090100-mRNA-1
chr1_2 CDS 71950849 71950981 71950849 ID=Msa0090100-mRNA-1:cds;Parent=Msa0090100-mRNA-1
chr1_2 CDS 71951069 71951172 71951069 ID=Msa0090100-mRNA-1:cds;Parent=Msa0090100-mRNA-1
chr1_2 CDS 71953077 71953248 71953077 ID=Msa0090100-mRNA-1:cds;Parent=Msa0090100-mRNA-1
chr1_2 CDS 71953369 71953509 71953369 ID=Msa0090100-mRNA-1:cds;Parent=Msa0090100-mRNA-1
chr1_2 CDS 71954661 71955041 71954661 ID=Msa0090100-mRNA-1:cds;Parent=Msa0090100-mRNA-1
chr1_2 three_prime_UTR 71955042 71955663 71955042 ID=Msa0090100-mRNA-1:three_prime_utr;Parent=Msa0090100-mRNA-1
Gene Sequence

>Msa0090100

ATGTCACTTCTTAATCAACTCTTTAGCAGAGGCGTTTTTTCTACTCGTTGTAAAACATGCCTCAACCTCGCAATTTCACGCATGAAGTTGCTACAAAACAAGCGAGATGTTCAACTCAAACAAATGCGGAAGGAGATTTCCCAATTTTTGCAGGCTGGTCAAGAACCAATTGCTAGAATTCGAGTGGAGCATATCATTCGAGAACAAAATATATGGGCTGCATATGAAATTTTGGAGTTATTCTGCGAGTTCGTCCTTGCACGTGTACCTATAATTGAGAGTCAGAAGGAATGCCCGTCGGAATTGCGAGAAGCCATTGCAAGTATAATTTTTGCTGCTCCTAGGTGTTCTGATATACCAGACTTATTGCACATCAAGAACTTGTTTACTACTAAATATGGGAAAGAATTTGTCACTGCAATATCTGAACTTCGTCCTGATTCAGGCGTGAATCGCACTATAATTGAAAAACTTTCAGTTAGTGCTCCATCTGGAGAGATAAAACTCAAGGTCTTGACGGATATTGCAGAAGAATACAATCTAGCATGGGATTCTTCTAAAACTGCAGCAGAATTTAGGAAAAATCATGAAGATCTACTGGGTGGAGCAAAGCAAGTTGGTGTCGGAGCTGCACTTTCTCATGCTCCCAGCAAAAACAATTCCAATAGTTTTTCAGCTTGTAATACGGAACAGTCTATCAAATCTACACACGATAAACAACAATATGAACACCTTGAAGCTTCTATTCTTTCTAACAATAATTCTTGGTTGAACACTAATGAAATTGAGCAGTCACACAAAAATAACGACGTCCAATTCAATGATACTAAAACTGAGACTATATTTCAATCCTCTGATATATTGGAGAAGGCTCGAGCCGCCATAGCTTCTGCAAATCGTGCAACTGCAGCTGCTCGTGCTGCTGCTTCACTTGCACATAGTGACTTTGGATCATTGAAGCTGGAAGGCGAATCTTCATAG

Protein sequence

>Msa0090100

MSLLNQLFSRGVFSTRCKTCLNLAISRMKLLQNKRDVQLKQMRKEISQFLQAGQEPIARIRVEHIIREQNIWAAYEILELFCEFVLARVPIIESQKECPSELREAIASIIFAAPRCSDIPDLLHIKNLFTTKYGKEFVTAISELRPDSGVNRTIIEKLSVSAPSGEIKLKVLTDIAEEYNLAWDSSKTAAEFRKNHEDLLGGAKQVGVGAALSHAPSKNNSNSFSACNTEQSIKSTHDKQQYEHLEASILSNNNSWLNTNEIEQSHKNNDVQFNDTKTETIFQSSDILEKARAAIASANRATAAARAAASLAHSDFGSLKLEGESS*