Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046760 | sp|O48920|ARF_VIGUN | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 3.90e-110 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa0046760 | 0.837618 | 4.673292e-57 | -8.615850e-47 |
| Msa0014570 | Msa0046760 | 0.803137 | 4.024304e-49 | -8.615850e-47 |
| Msa0027320 | Msa0046760 | 0.803253 | 3.808127e-49 | -8.615850e-47 |
| Msa0031820 | Msa0046760 | 0.836466 | 9.206356e-57 | -8.615850e-47 |
| Msa0033880 | Msa0046760 | 0.824619 | 7.315828e-54 | -8.615850e-47 |
| Msa0037160 | Msa0046760 | 0.833934 | 4.009311e-56 | -8.615850e-47 |
| Msa0041720 | Msa0046760 | 0.804948 | 1.690342e-49 | -8.615850e-47 |
| Msa0046760 | Msa0081650 | 0.802842 | 4.630305e-49 | -8.615850e-47 |
| Msa0046760 | Msa0085370 | 0.804394 | 2.206533e-49 | -8.615850e-47 |
| Msa0046760 | Msa0097590 | 0.801448 | 8.960301e-49 | -8.615850e-47 |
| Msa0046760 | Msa0097610 | 0.804274 | 2.336703e-49 | -8.615850e-47 |
| Msa0046760 | Msa0100800 | 0.823827 | 1.122933e-53 | -8.615850e-47 |
| Msa0046760 | Msa0102400 | 0.803653 | 3.145598e-49 | -8.615850e-47 |
| Msa0046760 | Msa0126770 | 0.839334 | 1.686589e-57 | -8.615850e-47 |
| Msa0046760 | Msa0127850 | 0.817619 | 3.001524e-52 | -8.615850e-47 |
| Msa0046760 | Msa0165300 | 0.801512 | 8.694562e-49 | -8.615850e-47 |
| Msa0046760 | Msa0171850 | 0.843021 | 1.809723e-58 | -8.615850e-47 |
| Msa0046760 | Msa0174000 | 0.820880 | 5.428849e-53 | -8.615850e-47 |
| Msa0046760 | Msa0177210 | 0.838523 | 2.734877e-57 | -8.615850e-47 |
| Msa0046760 | Msa0231660 | 0.802998 | 4.298598e-49 | -8.615850e-47 |
| Msa0046760 | Msa0267780 | 0.809360 | 1.966723e-50 | -8.615850e-47 |
| Msa0046760 | Msa0281430 | 0.825881 | 3.679788e-54 | -8.615850e-47 |
| Msa0046760 | Msa0320680 | 0.825440 | 4.681337e-54 | -8.615850e-47 |
| Msa0046760 | Msa0329320 | 0.802714 | 4.921887e-49 | -8.615850e-47 |
| Msa0046760 | Msa0358890 | 0.806117 | 9.612836e-50 | -8.615850e-47 |
| Msa0046760 | Msa0411410 | 0.802924 | 4.453465e-49 | -8.615850e-47 |
| Msa0046760 | Msa0428050 | 0.816405 | 5.623567e-52 | -8.615850e-47 |
| Msa0046760 | Msa0428240 | 0.834715 | 2.553371e-56 | -8.615850e-47 |
| Msa0046760 | Msa0433750 | 0.804657 | 1.944536e-49 | -8.615850e-47 |
| Msa0046760 | Msa0435690 | 0.811980 | 5.337180e-51 | -8.615850e-47 |
| Msa0046760 | Msa0451070 | 0.818875 | 1.560197e-52 | -8.615850e-47 |
| Msa0046760 | Msa0462220 | 0.808957 | 2.398772e-50 | -8.615850e-47 |
| Msa0046760 | Msa0462880 | 0.801404 | 9.150420e-49 | -8.615850e-47 |
| Msa0046760 | Msa0474390 | 0.800206 | 1.606744e-48 | -8.615850e-47 |
| Msa0046760 | Msa0474590 | 0.836268 | 1.033985e-56 | -8.615850e-47 |
| Msa0046760 | Msa0479200 | 0.838198 | 3.316759e-57 | -8.615850e-47 |
| Msa0046760 | Msa0517090 | 0.814184 | 1.752754e-51 | -8.615850e-47 |
| Msa0046760 | Msa0532980 | 0.800465 | 1.422737e-48 | -8.615850e-47 |
| Msa0046760 | Msa0542160 | 0.802908 | 4.488251e-49 | -8.615850e-47 |
| Msa0046760 | Msa0549590 | 0.832240 | 1.058057e-55 | -8.615850e-47 |
| Msa0046760 | Msa0556010 | 0.808360 | 3.218387e-50 | -8.615850e-47 |
| Msa0046760 | Msa0578090 | 0.820886 | 5.412179e-53 | -8.615850e-47 |
| Msa0046760 | Msa0581690 | 0.828267 | 9.887256e-55 | -8.615850e-47 |
| Msa0046760 | Msa0586850 | 0.833320 | 5.706563e-56 | -8.615850e-47 |
| Msa0046760 | Msa0597000 | 0.816866 | 4.434510e-52 | -8.615850e-47 |
| Msa0046760 | Msa0603670 | 0.803689 | 3.091898e-49 | -8.615850e-47 |
| Msa0046760 | Msa0620620 | 0.855887 | 4.666595e-62 | -8.615850e-47 |
| Msa0046760 | Msa0626680 | 0.811866 | 5.649418e-51 | -8.615850e-47 |
| Msa0046760 | Msa0640500 | 0.804548 | 2.049467e-49 | -8.615850e-47 |
| Msa0046760 | Msa0646130 | 0.823376 | 1.431883e-53 | -8.615850e-47 |
| Msa0046760 | Msa0664760 | 0.815499 | 8.958016e-52 | -8.615850e-47 |
| Msa0046760 | Msa0679700 | 0.810274 | 1.250357e-50 | -8.615850e-47 |
| Msa0046760 | Msa0685760 | 0.810462 | 1.139091e-50 | -8.615850e-47 |
| Msa0046760 | Msa0737570 | 0.803953 | 2.725537e-49 | -8.615850e-47 |
| Msa0046760 | Msa0750920 | 0.814629 | 1.397515e-51 | -8.615850e-47 |
| Msa0046760 | Msa0793140 | -0.821241 | 4.481826e-53 | -8.615850e-47 |
| Msa0046760 | Msa0800700 | 0.803943 | 2.738712e-49 | -8.615850e-47 |
| Msa0046760 | Msa0803630 | 0.800827 | 1.200335e-48 | -8.615850e-47 |
| Msa0046760 | Msa0826760 | 0.870357 | 1.551814e-66 | -8.615850e-47 |
| Msa0046760 | Msa0830390 | 0.815397 | 9.438473e-52 | -8.615850e-47 |
| Msa0046760 | Msa0837650 | 0.846186 | 2.543580e-59 | -8.615850e-47 |
| Msa0046760 | Msa0844230 | 0.801783 | 7.651493e-49 | -8.615850e-47 |
| Msa0046760 | Msa0856920 | 0.801691 | 7.990478e-49 | -8.615850e-47 |
| Msa0046760 | Msa0865570 | 0.831957 | 1.243270e-55 | -8.615850e-47 |
| Msa0046760 | Msa0865890 | 0.807064 | 6.067007e-50 | -8.615850e-47 |
| Msa0046760 | Msa0888940 | 0.810928 | 9.032240e-51 | -8.615850e-47 |
| Msa0046760 | Msa0909010 | 0.817178 | 3.772209e-52 | -8.615850e-47 |
| Msa0046760 | Msa0925770 | 0.809148 | 2.183666e-50 | -8.615850e-47 |
| Msa0046760 | Msa0944660 | 0.814804 | 1.278137e-51 | -8.615850e-47 |
| Msa0046760 | Msa0947530 | -0.835677 | 1.459588e-56 | -8.615850e-47 |
| Msa0046760 | Msa0955190 | 0.806981 | 6.315788e-50 | -8.615850e-47 |
| Msa0046760 | Msa1038080 | 0.822258 | 2.608254e-53 | -8.615850e-47 |
| Msa0046760 | Msa1040840 | 0.894961 | 1.505643e-75 | -8.615850e-47 |
| Msa0046760 | Msa1041520 | 0.809440 | 1.890500e-50 | -8.615850e-47 |
| Msa0046760 | Msa1064250 | 0.833111 | 6.434827e-56 | -8.615850e-47 |
| Msa0046760 | Msa1080640 | 0.824114 | 9.616788e-54 | -8.615850e-47 |
| Msa0046760 | Msa1080800 | 0.819064 | 1.413127e-52 | -8.615850e-47 |
| Msa0046760 | Msa1082690 | 0.827763 | 1.307208e-54 | -8.615850e-47 |
| Msa0046760 | Msa1118940 | 0.830807 | 2.385070e-55 | -8.615850e-47 |
| Msa0046760 | Msa1127130 | 0.805565 | 1.255677e-49 | -8.615850e-47 |
| Msa0046760 | Msa1129690 | 0.816768 | 4.665372e-52 | -8.615850e-47 |
| Msa0046760 | Msa1135890 | 0.828754 | 7.540004e-55 | -8.615850e-47 |
| Msa0046760 | Msa1145240 | 0.809898 | 1.507268e-50 | -8.615850e-47 |
| Msa0046760 | Msa1202580 | 0.813634 | 2.317176e-51 | -8.615850e-47 |
| Msa0046760 | Msa1206850 | 0.820987 | 5.129448e-53 | -8.615850e-47 |
| Msa0046760 | Msa1214240 | 0.805960 | 1.036954e-49 | -8.615850e-47 |
| Msa0046760 | Msa1223330 | 0.809526 | 1.811595e-50 | -8.615850e-47 |
| Msa0046760 | Msa1254710 | 0.807301 | 5.404975e-50 | -8.615850e-47 |
| Msa0046760 | Msa1257130 | 0.807419 | 5.101830e-50 | -8.615850e-47 |
| Msa0046760 | Msa1294960 | 0.817848 | 2.665937e-52 | -8.615850e-47 |
| Msa0046760 | Msa1355700 | 0.804691 | 1.912987e-49 | -8.615850e-47 |
| Msa0046760 | Msa1365760 | 0.822350 | 2.483183e-53 | -8.615850e-47 |
| Msa0046760 | Msa1370620 | 0.831640 | 1.488926e-55 | -8.615850e-47 |
| Msa0046760 | Msa1375680 | 0.813875 | 2.051159e-51 | -8.615850e-47 |
| Msa0046760 | Msa1446780 | 0.804494 | 2.102365e-49 | -8.615850e-47 |
| Msa0046760 | Msa1466090 | 0.802634 | 5.112181e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046760 | MtrunA17_Chr7g0270301 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.54e-111 | 315 |
| Msa0046760 | MtrunA17_Chr6g0450081 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.62e-111 | 315 |
| Msa0046760 | MtrunA17_Chr1g0194261 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 2.63e-111 | 315 |
| Msa0046760 | MtrunA17_Chr5g0413451 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 5.73e-111 | 314 |
| Msa0046760 | MtrunA17_Chr5g0413441 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 5.73e-111 | 314 |
| Msa0046760 | MtrunA17_Chr5g0401761 | 70.558 | 197 | 31 | 2 | 1 | 187 | 1 | 180 | 1.48e-95 | 275 |
| Msa0046760 | MtrunA17_Chr4g0072861 | 51.531 | 196 | 68 | 2 | 1 | 186 | 1 | 179 | 1.42e-65 | 199 |
| Msa0046760 | MtrunA17_Chr5g0395631 | 52.174 | 184 | 81 | 3 | 1 | 184 | 1 | 177 | 6.61e-62 | 190 |
| Msa0046760 | MtrunA17_Chr4g0039591 | 51.630 | 184 | 82 | 3 | 1 | 184 | 1 | 177 | 3.20e-61 | 188 |
| Msa0046760 | MtrunA17_Chr5g0395641 | 48.404 | 188 | 90 | 2 | 1 | 187 | 1 | 182 | 2.13e-60 | 186 |
| Msa0046760 | MtrunA17_Chr1g0188111 | 47.619 | 189 | 90 | 2 | 1 | 188 | 1 | 181 | 9.55e-56 | 174 |
| Msa0046760 | MtrunA17_Chr8g0373271 | 41.860 | 172 | 90 | 6 | 18 | 187 | 17 | 180 | 1.23e-34 | 120 |
| Msa0046760 | MtrunA17_Chr5g0395651 | 64.865 | 74 | 26 | 0 | 1 | 74 | 1 | 74 | 4.77e-30 | 105 |
| Msa0046760 | MtrunA17_Chr2g0287721 | 33.871 | 186 | 103 | 5 | 5 | 180 | 5 | 180 | 1.17e-24 | 95.5 |
| Msa0046760 | MtrunA17_Chr5g0434561 | 31.522 | 184 | 114 | 4 | 1 | 180 | 1 | 176 | 1.82e-19 | 81.3 |
| Msa0046760 | MtrunA17_Chr5g0401071 | 29.319 | 191 | 125 | 3 | 1 | 188 | 1 | 184 | 8.23e-19 | 79.7 |
| Msa0046760 | MtrunA17_Chr4g0012371 | 29.070 | 172 | 112 | 3 | 18 | 187 | 1 | 164 | 6.63e-16 | 71.6 |
| Msa0046760 | MtrunA17_Chr2g0294701 | 28.261 | 184 | 109 | 3 | 15 | 184 | 18 | 192 | 2.28e-13 | 65.5 |
| Msa0046760 | MtrunA17_Chr7g0271761 | 27.717 | 184 | 110 | 3 | 15 | 184 | 18 | 192 | 7.98e-13 | 63.9 |
| Msa0046760 | MtrunA17_Chr5g0395671 | 51.020 | 49 | 24 | 0 | 139 | 187 | 44 | 92 | 1.93e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046760 | AT1G10630.1 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 3.63e-111 | 315 |
| Msa0046760 | AT1G10630.2 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 3.63e-111 | 315 |
| Msa0046760 | AT5G14670.2 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 7.91e-111 | 314 |
| Msa0046760 | AT5G14670.3 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 7.91e-111 | 314 |
| Msa0046760 | AT2G47170.2 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.49e-110 | 313 |
| Msa0046760 | AT2G47170.1 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.49e-110 | 313 |
| Msa0046760 | AT2G47170.3 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.49e-110 | 313 |
| Msa0046760 | AT1G23490.1 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa0046760 | AT1G70490.2 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa0046760 | AT1G70490.7 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa0046760 | AT1G70490.4 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa0046760 | AT1G70490.3 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa0046760 | AT1G70490.1 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa0046760 | AT1G70490.6 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa0046760 | AT1G70490.5 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa0046760 | AT5G14670.1 | 81.818 | 198 | 9 | 2 | 1 | 188 | 1 | 181 | 8.84e-110 | 311 |
| Msa0046760 | AT3G62290.3 | 81.818 | 198 | 9 | 2 | 1 | 188 | 1 | 181 | 2.08e-109 | 310 |
| Msa0046760 | AT3G62290.1 | 81.818 | 198 | 9 | 2 | 1 | 188 | 1 | 181 | 2.08e-109 | 310 |
| Msa0046760 | AT3G62290.2 | 81.818 | 198 | 9 | 2 | 1 | 188 | 1 | 181 | 2.08e-109 | 310 |
| Msa0046760 | AT2G15310.1 | 54.040 | 198 | 64 | 2 | 1 | 188 | 1 | 181 | 1.82e-68 | 207 |
| Msa0046760 | AT2G24765.1 | 50.510 | 196 | 70 | 2 | 1 | 186 | 1 | 179 | 1.20e-65 | 199 |
| Msa0046760 | AT5G17060.2 | 50.000 | 184 | 85 | 3 | 1 | 184 | 1 | 177 | 3.09e-60 | 186 |
| Msa0046760 | AT5G17060.1 | 50.000 | 184 | 85 | 3 | 1 | 184 | 1 | 177 | 3.09e-60 | 186 |
| Msa0046760 | AT3G03120.1 | 50.543 | 184 | 84 | 3 | 1 | 184 | 1 | 177 | 1.41e-59 | 184 |
| Msa0046760 | AT3G22950.1 | 48.677 | 189 | 88 | 2 | 1 | 188 | 1 | 181 | 1.59e-58 | 181 |
| Msa0046760 | AT3G22950.2 | 48.677 | 189 | 88 | 2 | 1 | 188 | 1 | 181 | 1.59e-58 | 181 |
| Msa0046760 | AT1G02430.1 | 44.615 | 195 | 87 | 8 | 1 | 183 | 1 | 186 | 3.08e-45 | 148 |
| Msa0046760 | AT1G02440.1 | 40.838 | 191 | 100 | 6 | 1 | 183 | 1 | 186 | 1.55e-41 | 139 |
| Msa0046760 | AT2G24765.2 | 48.966 | 145 | 47 | 2 | 1 | 135 | 1 | 128 | 2.19e-41 | 136 |
| Msa0046760 | AT3G03120.2 | 49.635 | 137 | 62 | 3 | 1 | 137 | 1 | 130 | 4.00e-39 | 130 |
| Msa0046760 | AT2G18390.1 | 41.860 | 172 | 90 | 6 | 18 | 187 | 17 | 180 | 5.65e-34 | 119 |
| Msa0046760 | AT1G02430.2 | 42.262 | 168 | 80 | 7 | 1 | 160 | 1 | 159 | 1.09e-33 | 117 |
| Msa0046760 | AT1G02440.2 | 32.919 | 161 | 65 | 4 | 1 | 160 | 1 | 119 | 1.54e-24 | 93.2 |
| Msa0046760 | AT5G52210.1 | 32.597 | 181 | 106 | 3 | 8 | 180 | 8 | 180 | 3.88e-23 | 92.0 |
| Msa0046760 | AT5G52210.2 | 32.597 | 181 | 106 | 3 | 8 | 180 | 8 | 180 | 3.88e-23 | 92.0 |
| Msa0046760 | AT3G49870.1 | 30.890 | 191 | 120 | 4 | 1 | 187 | 1 | 183 | 8.96e-21 | 85.1 |
| Msa0046760 | AT5G67560.1 | 30.588 | 170 | 110 | 2 | 12 | 180 | 14 | 176 | 2.68e-19 | 81.3 |
| Msa0046760 | AT5G37680.1 | 31.522 | 184 | 114 | 4 | 1 | 180 | 1 | 176 | 3.63e-19 | 80.9 |
| Msa0046760 | AT3G49870.2 | 29.651 | 172 | 111 | 3 | 18 | 187 | 1 | 164 | 3.15e-17 | 75.5 |
| Msa0046760 | AT3G49860.1 | 29.310 | 174 | 113 | 3 | 16 | 187 | 10 | 175 | 8.07e-17 | 74.7 |
| Msa0046760 | AT1G09180.1 | 30.729 | 192 | 98 | 5 | 13 | 184 | 16 | 192 | 2.64e-15 | 70.9 |
| Msa0046760 | AT3G62560.1 | 28.261 | 184 | 109 | 3 | 15 | 184 | 18 | 192 | 4.99e-13 | 65.1 |
| Msa0046760 | AT5G37680.2 | 30.147 | 136 | 86 | 2 | 46 | 180 | 2 | 129 | 6.08e-13 | 63.5 |
| Msa0046760 | AT4G02080.1 | 27.717 | 184 | 110 | 3 | 15 | 184 | 18 | 192 | 1.64e-12 | 63.5 |
| Msa0046760 | AT1G56330.1 | 28.261 | 184 | 109 | 3 | 15 | 184 | 18 | 192 | 1.69e-12 | 63.5 |
Find 67 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAATAATAGTTGAAAA+TGG | 0.181951 | 1_1:+79084285 | Msa0046760:intron |
| AATTGGAAAATGGAGGAAAT+TGG | 0.229441 | 1_1:+79085914 | Msa0046760:CDS |
| AGGATTCAAATTGAGAAGTA+TGG | 0.246836 | 1_1:+79085868 | Msa0046760:CDS |
| TGATTTCAGATGCTCGGATA+TGG | 0.314023 | 1_1:+79087737 | Msa0046760:three_prime_UTR |
| GACAGGATAAAATTCTAAAC+AGG | 0.327920 | 1_1:-79087764 | None:intergenic |
| TTGTAGAACTGTCAAGTGTT+AGG | 0.337074 | 1_1:+79085848 | Msa0046760:intron |
| TTTCCTTCTTCGCAAATAAC+CGG | 0.361975 | 1_1:-79084333 | None:intergenic |
| AATTGACAATACAGATCAAT+AGG | 0.380708 | 1_1:-79087878 | None:intergenic |
| GAAGGAAATGCGTATACTTA+TGG | 0.381963 | 1_1:+79084348 | Msa0046760:CDS |
| TCAGCAGCATTCATAGCATT+TGG | 0.385055 | 1_1:-79087340 | None:intergenic |
| CAGCCGGTTATTTGCGAAGA+AGG | 0.398980 | 1_1:+79084330 | Msa0046760:CDS |
| ATTGGAAAATGGAGGAAATT+GGG | 0.415188 | 1_1:+79085915 | Msa0046760:CDS |
| CAGAGGTAGCACATGTGCTC+TGG | 0.443544 | 1_1:-79087506 | None:intergenic |
| ATTCACTTCGTCAGCGTCAC+TGG | 0.458451 | 1_1:+79087386 | Msa0046760:CDS |
| CGATTATGATTTCAGATGCT+CGG | 0.465999 | 1_1:+79087731 | Msa0046760:three_prime_UTR |
| TCAGAATAATAGTTGAAAAT+GGG | 0.467560 | 1_1:+79084286 | Msa0046760:intron |
| AGCTTTACTGTGTGGGATGT+TGG | 0.474274 | 1_1:+79084889 | Msa0046760:CDS |
| ATCAGATCTCTCTTCGTGGT+TGG | 0.490939 | 1_1:-79084104 | None:intergenic |
| CTCAAACAACATTGCAAGCA+AGG | 0.495880 | 1_1:+79087560 | Msa0046760:CDS |
| ATTCTCTATAAGCTCAAGCT+TGG | 0.498460 | 1_1:+79084400 | Msa0046760:CDS |
| GTCACCACCATTCCCACCAT+TGG | 0.507944 | 1_1:+79084430 | Msa0046760:CDS |
| ATTGTAAAACTTACCAATGG+TGG | 0.508835 | 1_1:-79084443 | None:intergenic |
| AAGCTAGGGACGAGCTGCAC+AGG | 0.511385 | 1_1:+79087149 | Msa0046760:CDS |
| GGATTCAAATTGAGAAGTAT+GGG | 0.521526 | 1_1:+79085869 | Msa0046760:CDS |
| TGTGTGGGATGTTGGTGGCC+AGG | 0.523027 | 1_1:+79084897 | Msa0046760:CDS |
| CTTAGTTATTCCGTTAGTCA+AGG | 0.523447 | 1_1:+79087682 | Msa0046760:exon |
| CAGAGCACATGTGCTACCTC+TGG | 0.523931 | 1_1:+79087507 | Msa0046760:CDS |
| AAGCTTGAGCTTATAGAGAA+TGG | 0.532263 | 1_1:-79084398 | None:intergenic |
| GAACATTAGCTTTACTGTGT+GGG | 0.534133 | 1_1:+79084882 | Msa0046760:CDS |
| TATACATAATATAAAAGCTA+TGG | 0.535527 | 1_1:+79087924 | Msa0046760:three_prime_UTR |
| TTTACTGTGTGGGATGTTGG+TGG | 0.540094 | 1_1:+79084892 | Msa0046760:CDS |
| TGAAACAATACATCTTAGAC+AGG | 0.542574 | 1_1:-79087781 | None:intergenic |
| AAATAACCGGCTGAATAGCT+TGG | 0.543563 | 1_1:-79084320 | None:intergenic |
| AATATAGAAATACCTTGTCC+TGG | 0.547425 | 1_1:-79084915 | None:intergenic |
| TTACCTTTGAGAATTGAGAA+TGG | 0.549217 | 1_1:-79084148 | None:intergenic |
| ATTTGGTGTAGGGTTTAATG+TGG | 0.553247 | 1_1:+79084843 | Msa0046760:intron |
| GCTGAAATAACTGATAAGCT+AGG | 0.555145 | 1_1:+79087358 | Msa0046760:CDS |
| TTAGTTATTCCGTTAGTCAA+GGG | 0.560759 | 1_1:+79087683 | Msa0046760:exon |
| ATGGGCCCAAAGAGTGATGT+GGG | 0.560859 | 1_1:+79085887 | Msa0046760:CDS |
| GGAGATCAGATCTCTCTTCG+TGG | 0.561416 | 1_1:-79084108 | None:intergenic |
| AGATCGTGTTGTTGAAGCTA+GGG | 0.564599 | 1_1:+79087135 | Msa0046760:CDS |
| GGATGTTGGTGGCCAGGACA+AGG | 0.567218 | 1_1:+79084903 | Msa0046760:CDS |
| AAACTTACCAATGGTGGGAA+TGG | 0.569667 | 1_1:-79084437 | None:intergenic |
| TAGCTTCAACAACACGATCT+CGG | 0.576560 | 1_1:-79087132 | None:intergenic |
| CATTCACCAAGCTATTCAGC+CGG | 0.576922 | 1_1:+79084314 | Msa0046760:CDS |
| GAGATCGTGTTGTTGAAGCT+AGG | 0.579112 | 1_1:+79087134 | Msa0046760:CDS |
| ATGGTCGGTCTCGATGCCGC+TGG | 0.579718 | 1_1:+79084367 | Msa0046760:CDS |
| TTGTAAAACTTACCAATGGT+GGG | 0.580371 | 1_1:-79084442 | None:intergenic |
| TTCATGCAGCCCTTGACTAA+CGG | 0.582219 | 1_1:-79087692 | None:intergenic |
| TCTGGTGAAGGACTTTATGA+AGG | 0.585343 | 1_1:+79087525 | Msa0046760:CDS |
| GAAAATGAACAAATGTACCT+AGG | 0.585507 | 1_1:+79087813 | Msa0046760:three_prime_UTR |
| ATACCATTCTCAATTCTCAA+AGG | 0.593682 | 1_1:+79084145 | Msa0046760:five_prime_UTR |
| ACATGTGCTACCTCTGGTGA+AGG | 0.597179 | 1_1:+79087513 | Msa0046760:CDS |
| GACTTTATGAAGGACTAGAC+TGG | 0.599016 | 1_1:+79087535 | Msa0046760:CDS |
| CTTACCAATGGTGGGAATGG+TGG | 0.612027 | 1_1:-79084434 | None:intergenic |
| TATGCAATTGTATTAAACCT+AGG | 0.615788 | 1_1:-79087830 | None:intergenic |
| TATGGGCCCAAAGAGTGATG+TGG | 0.622666 | 1_1:+79085886 | Msa0046760:CDS |
| AGGGTTTAATGTGGAAACTG+TGG | 0.625050 | 1_1:+79084852 | Msa0046760:intron |
| TTCATAAAGTCCTTCACCAG+AGG | 0.636014 | 1_1:-79087523 | None:intergenic |
| AGAACATTAGCTTTACTGTG+TGG | 0.640151 | 1_1:+79084881 | Msa0046760:CDS |
| CTTGAGCTTATAGAGAATGG+TGG | 0.640806 | 1_1:-79084395 | None:intergenic |
| GAAATGCGTATACTTATGGT+CGG | 0.647571 | 1_1:+79084352 | Msa0046760:CDS |
| GGGCCCAAAGAGTGATGTGG+GGG | 0.655758 | 1_1:+79085889 | Msa0046760:CDS |
| GAGAATGGTGGTCTTACCAG+CGG | 0.666289 | 1_1:-79084383 | None:intergenic |
| ACAGGATAAAATTCTAAACA+GGG | 0.688920 | 1_1:-79087763 | None:intergenic |
| TGGGCCCAAAGAGTGATGTG+GGG | 0.700653 | 1_1:+79085888 | Msa0046760:CDS |
| GCTGCACAGGATGTTAAACG+AGG | 0.784396 | 1_1:+79087162 | Msa0046760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAATAAAAATAAGATAA+CGG | + | chr1_1:79083981-79084000 | Msa0046760:intron | 10.0% |
| !!! | ATTTTACAAAAATTCGTATA+TGG | - | chr1_1:79083968-79083987 | None:intergenic | 15.0% |
| !! | GATTTACAAATTATGTTATA+AGG | + | chr1_1:79085948-79085967 | Msa0046760:intron | 15.0% |
| !! | ACAGATTATTAACAAATATT+AGG | - | chr1_1:79086518-79086537 | None:intergenic | 15.0% |
| !!! | ATTAAATTTTAATGTGCATT+GGG | - | chr1_1:79086852-79086871 | None:intergenic | 15.0% |
| !! | AACTCAAAGATAAAAATATA+TGG | - | chr1_1:79086998-79087017 | None:intergenic | 15.0% |
| !! | TATACATAATATAAAAGCTA+TGG | + | chr1_1:79087924-79087943 | Msa0046760:three_prime_UTR | 15.0% |
| !! | ACATCAATTAGAATTGAAAT+TGG | - | chr1_1:79084248-79084267 | None:intergenic | 20.0% |
| !! | TTTCAATTCTAATTGATGTT+TGG | + | chr1_1:79084249-79084268 | Msa0046760:intron | 20.0% |
| !! | TTCAGAATAATAGTTGAAAA+TGG | + | chr1_1:79084285-79084304 | Msa0046760:intron | 20.0% |
| !! | TCAGAATAATAGTTGAAAAT+GGG | + | chr1_1:79084286-79084305 | Msa0046760:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | - | chr1_1:79084531-79084550 | None:intergenic | 20.0% |
| !!! | TTTTGATGATATAGATGATT+TGG | + | chr1_1:79084826-79084845 | Msa0046760:intron | 20.0% |
| !!! | TATATTTGTGTGTATGTTTT+TGG | + | chr1_1:79084932-79084951 | Msa0046760:intron | 20.0% |
| !! | ATTATAAAACTAGTTACAGT+AGG | + | chr1_1:79085124-79085143 | Msa0046760:intron | 20.0% |
| !! | AATCATTGTTCTGTTATAAA+AGG | - | chr1_1:79085188-79085207 | None:intergenic | 20.0% |
| !! | TTATACTAAATAGCATATCA+CGG | - | chr1_1:79085279-79085298 | None:intergenic | 20.0% |
| !! | GAATGTATTATTGATAGAAA+AGG | - | chr1_1:79086175-79086194 | None:intergenic | 20.0% |
| !!! | TCATTGTTTTTATTTTTGCT+TGG | + | chr1_1:79086451-79086470 | Msa0046760:intron | 20.0% |
| !! | TCAAAACAAAATATGTATCT+TGG | - | chr1_1:79086603-79086622 | None:intergenic | 20.0% |
| !!! | GATTAAATTTTAATGTGCAT+TGG | - | chr1_1:79086853-79086872 | None:intergenic | 20.0% |
| !! | AGATAAAAATATATGGTTAG+AGG | - | chr1_1:79086991-79087010 | None:intergenic | 20.0% |
| !! | ATTACTTTCAAAATACACAA+GGG | + | chr1_1:79087083-79087102 | Msa0046760:intron | 20.0% |
| !! | AATGAATGAATGTGATAATT+TGG | + | chr1_1:79087202-79087221 | Msa0046760:intron | 20.0% |
| !!! | TATTTTGTTATTTGTTTTGC+AGG | + | chr1_1:79087659-79087678 | Msa0046760:intron | 20.0% |
| ! | AAATTCGTATATGGTTAACA+TGG | - | chr1_1:79083959-79083978 | None:intergenic | 25.0% |
| !!! | AATTGAGAATGGTATTTTTG+TGG | - | chr1_1:79084140-79084159 | None:intergenic | 25.0% |
| ! | CAATTCCTTTCTATAAACAA+TGG | + | chr1_1:79084462-79084481 | Msa0046760:intron | 25.0% |
| ! | CATTACCATTGTTTATAGAA+AGG | - | chr1_1:79084470-79084489 | None:intergenic | 25.0% |
| ! | GTAATGATAATTATGAAGCA+CGG | + | chr1_1:79084484-79084503 | Msa0046760:intron | 25.0% |
| !! | TGATTTTATGATATGACGAT+TGG | + | chr1_1:79085004-79085023 | Msa0046760:intron | 25.0% |
| !!! | GCTACTCTGTTTTTATTTAT+GGG | + | chr1_1:79085041-79085060 | Msa0046760:intron | 25.0% |
| !! | ATTTTAAATAGAAGCTAGAG+TGG | + | chr1_1:79085205-79085224 | Msa0046760:intron | 25.0% |
| ! | TCAAATATTAGAAGCTATAG+TGG | + | chr1_1:79085306-79085325 | Msa0046760:intron | 25.0% |
| ! | TTATACCAAATAGCATATCA+CGG | - | chr1_1:79085384-79085403 | None:intergenic | 25.0% |
| ! | TCAAATATTAGAAGCTATAG+TGG | + | chr1_1:79085306-79085325 | Msa0046760:intron | 25.0% |
| ! | AAATAGGATGATGATTCAAT+GGG | - | chr1_1:79085631-79085650 | None:intergenic | 25.0% |
| ! | AAATGAGTGAAATGACAAAT+AGG | - | chr1_1:79085647-79085666 | None:intergenic | 25.0% |
| ! | AAATAGGATGATGATTCAAT+GGG | - | chr1_1:79085631-79085650 | None:intergenic | 25.0% |
| ! | AAATGAGTGAAATGACAAAT+AGG | - | chr1_1:79085647-79085666 | None:intergenic | 25.0% |
| ! | AAAAGAGATAAATCTCTCTT+TGG | - | chr1_1:79086032-79086051 | None:intergenic | 25.0% |
| !!! | TTCGCTTGTTATCTTAATTT+TGG | + | chr1_1:79086192-79086211 | Msa0046760:intron | 25.0% |
| !! | TATTAGTTTCATTCCTATCT+GGG | + | chr1_1:79086253-79086272 | Msa0046760:intron | 25.0% |
| !! | ATTTAGATTTTATCCCAGAT+AGG | - | chr1_1:79086269-79086288 | None:intergenic | 25.0% |
| ! | AATTGTTAATTCACCAGTAA+CGG | - | chr1_1:79086313-79086332 | None:intergenic | 25.0% |
| ! | ATGTTGTGAAACAATCATTA+AGG | + | chr1_1:79086338-79086357 | Msa0046760:intron | 25.0% |
| ! | GTTCTATCGTAAACTATAAT+TGG | - | chr1_1:79086366-79086385 | None:intergenic | 25.0% |
| ! | TAGTTTACGATAGAACATTA+TGG | + | chr1_1:79086370-79086389 | Msa0046760:intron | 25.0% |
| ! | AATCATTATCCAATTAAGTG+GGG | - | chr1_1:79086419-79086438 | None:intergenic | 25.0% |
| ! | CAATCATTATCCAATTAAGT+GGG | - | chr1_1:79086420-79086439 | None:intergenic | 25.0% |
| ! | TTAATTGGATAATGATTGGT+TGG | + | chr1_1:79086422-79086441 | Msa0046760:intron | 25.0% |
| ! | ATCCTAAACCAATTATACAT+AGG | + | chr1_1:79086870-79086889 | Msa0046760:intron | 25.0% |
| ! | ACTCTTATGTTTATGAATGT+TGG | + | chr1_1:79086901-79086920 | Msa0046760:intron | 25.0% |
| !! | TAATAAGAAAAGCATATCGA+TGG | - | chr1_1:79087043-79087062 | None:intergenic | 25.0% |
| ! | CATTACTTTCAAAATACACA+AGG | + | chr1_1:79087082-79087101 | Msa0046760:intron | 25.0% |
| ! | ATTATCACATTCATTCATTG+AGG | - | chr1_1:79087201-79087220 | None:intergenic | 25.0% |
| ! | TCTATGGTTATAATATTGTC+AGG | + | chr1_1:79087267-79087286 | Msa0046760:intron | 25.0% |
| !! | CTAAATTATGTCAAACCTTT+TGG | + | chr1_1:79087413-79087432 | Msa0046760:intron | 25.0% |
| ! | AACTCTGCAATTTAAATTAC+AGG | + | chr1_1:79087608-79087627 | Msa0046760:intron | 25.0% |
| ! | ACAGGATAAAATTCTAAACA+GGG | - | chr1_1:79087766-79087785 | None:intergenic | 25.0% |
| ! | TATGCAATTGTATTAAACCT+AGG | - | chr1_1:79087833-79087852 | None:intergenic | 25.0% |
| ! | AATTGACAATACAGATCAAT+AGG | - | chr1_1:79087881-79087900 | None:intergenic | 25.0% |
| !! | ATGGTATTTTTGTGGTGAAA+TGG | - | chr1_1:79084132-79084151 | None:intergenic | 30.0% |
| ATACCATTCTCAATTCTCAA+AGG | + | chr1_1:79084145-79084164 | Msa0046760:five_prime_UTR | 30.0% | |
| ! | TTACCTTTGAGAATTGAGAA+TGG | - | chr1_1:79084151-79084170 | None:intergenic | 30.0% |
| TGATATAGATCGGTGAAATT+GGG | - | chr1_1:79084197-79084216 | None:intergenic | 30.0% | |
| TCGTGAATTGTGATATAGAT+CGG | - | chr1_1:79084207-79084226 | None:intergenic | 30.0% | |
| TTGTAAAACTTACCAATGGT+GGG | - | chr1_1:79084445-79084464 | None:intergenic | 30.0% | |
| ATTGTAAAACTTACCAATGG+TGG | - | chr1_1:79084446-79084465 | None:intergenic | 30.0% | |
| GGAATTGTAAAACTTACCAA+TGG | - | chr1_1:79084449-79084468 | None:intergenic | 30.0% | |
| TTTGCTTATAATAGTGACTG+GGG | - | chr1_1:79084662-79084681 | None:intergenic | 30.0% | |
| CTTTGCTTATAATAGTGACT+GGG | - | chr1_1:79084663-79084682 | None:intergenic | 30.0% | |
| TCTTTGCTTATAATAGTGAC+TGG | - | chr1_1:79084664-79084683 | None:intergenic | 30.0% | |
| AAACCAGATACAATCTGAAA+AGG | + | chr1_1:79084739-79084758 | Msa0046760:intron | 30.0% | |
| AACCAGATACAATCTGAAAA+GGG | + | chr1_1:79084740-79084759 | Msa0046760:intron | 30.0% | |
| !!! | CAGAGAGAGTATTTTATCAA+GGG | + | chr1_1:79084785-79084804 | Msa0046760:intron | 30.0% |
| !! | TGATATAGATGATTTGGTGT+AGG | + | chr1_1:79084832-79084851 | Msa0046760:intron | 30.0% |
| !! | GATATAGATGATTTGGTGTA+GGG | + | chr1_1:79084833-79084852 | Msa0046760:intron | 30.0% |
| AATATAGAAATACCTTGTCC+TGG | - | chr1_1:79084918-79084937 | None:intergenic | 30.0% | |
| ! | ATATGACGATTGGTTGAAAT+TGG | + | chr1_1:79085014-79085033 | Msa0046760:intron | 30.0% |
| !!! | GGCTACTCTGTTTTTATTTA+TGG | + | chr1_1:79085040-79085059 | Msa0046760:intron | 30.0% |
| TAGAGGTGAAATGAAAGATA+AGG | + | chr1_1:79085074-79085093 | Msa0046760:intron | 30.0% | |
| CATTGTTCTGTTATAAAAGG+TGG | - | chr1_1:79085185-79085204 | None:intergenic | 30.0% | |
| CAAATAGGATGATGATTCAA+TGG | - | chr1_1:79085632-79085651 | None:intergenic | 30.0% | |
| AGGATTCAAATTGAGAAGTA+TGG | + | chr1_1:79085694-79085713 | Msa0046760:intron | 30.0% | |
| ! | GGATTCAAATTGAGAAGTAT+GGG | + | chr1_1:79085695-79085714 | Msa0046760:intron | 30.0% |
| AATTGGAAAATGGAGGAAAT+TGG | + | chr1_1:79085740-79085759 | Msa0046760:intron | 30.0% | |
| ATTGGAAAATGGAGGAAATT+GGG | + | chr1_1:79085741-79085760 | Msa0046760:intron | 30.0% | |
| CAAATAGGATGATGATTCAA+TGG | - | chr1_1:79085632-79085651 | None:intergenic | 30.0% | |
| AGGATTCAAATTGAGAAGTA+TGG | + | chr1_1:79085694-79085713 | Msa0046760:intron | 30.0% | |
| ! | GGATTCAAATTGAGAAGTAT+GGG | + | chr1_1:79085695-79085714 | Msa0046760:intron | 30.0% |
| AATTGGAAAATGGAGGAAAT+TGG | + | chr1_1:79085740-79085759 | Msa0046760:intron | 30.0% | |
| ATTGGAAAATGGAGGAAATT+GGG | + | chr1_1:79085741-79085760 | Msa0046760:intron | 30.0% | |
| ! | CTTTTCTGTTAGAACTGTAA+AGG | + | chr1_1:79086002-79086021 | Msa0046760:intron | 30.0% |
| ! | GAGAGATTTATCTCTTTTTG+AGG | + | chr1_1:79086034-79086053 | Msa0046760:intron | 30.0% |
| TAGGAATGAAACTAATAGCA+AGG | - | chr1_1:79086250-79086269 | None:intergenic | 30.0% | |
| ! | CTATTAGTTTCATTCCTATC+TGG | + | chr1_1:79086252-79086271 | Msa0046760:intron | 30.0% |
| !!! | ATCCCAAAATCGTTAGTTTT+AGG | + | chr1_1:79086287-79086306 | Msa0046760:intron | 30.0% |
| TAGAACATTATGGCGTAATT+TGG | + | chr1_1:79086380-79086399 | Msa0046760:intron | 30.0% | |
| CCAATCATTATCCAATTAAG+TGG | - | chr1_1:79086421-79086440 | None:intergenic | 30.0% | |
| CCACTTAATTGGATAATGAT+TGG | + | chr1_1:79086418-79086437 | Msa0046760:intron | 30.0% | |
| CTAGTAAATTCTAGCATGTT+TGG | - | chr1_1:79086543-79086562 | None:intergenic | 30.0% | |
| CAAACATGCTAGAATTTACT+AGG | + | chr1_1:79086541-79086560 | Msa0046760:intron | 30.0% | |
| TAGATCAAAACTAAGCACTA+TGG | - | chr1_1:79086704-79086723 | None:intergenic | 30.0% | |
| AGTGATTGTAGTGTCAATTA+AGG | + | chr1_1:79086731-79086750 | Msa0046760:intron | 30.0% | |
| !! | CACACGACTTGTTAAAATTA+TGG | + | chr1_1:79086809-79086828 | Msa0046760:intron | 30.0% |
| ! | TGCCTATGTATAATTGGTTT+AGG | - | chr1_1:79086875-79086894 | None:intergenic | 30.0% |
| AGAAGATGCCTATGTATAAT+TGG | - | chr1_1:79086881-79086900 | None:intergenic | 30.0% | |
| TTATGTTTATGAATGTTGGC+TGG | + | chr1_1:79086905-79086924 | Msa0046760:intron | 30.0% | |
| TGAAAGTAATGTCTCCATAA+AGG | - | chr1_1:79087073-79087092 | None:intergenic | 30.0% | |
| CAATCAGAAAATCAAGGTAT+AGG | - | chr1_1:79087244-79087263 | None:intergenic | 30.0% | |
| AGAAAGCAATCAGAAAATCA+AGG | - | chr1_1:79087250-79087269 | None:intergenic | 30.0% | |
| ! | GATTTTCTGATTGCTTTCTA+TGG | + | chr1_1:79087251-79087270 | Msa0046760:intron | 30.0% |
| ATAGAACAAGTAGATGAGAA+TGG | - | chr1_1:79087472-79087491 | None:intergenic | 30.0% | |
| TTAGTTATTCCGTTAGTCAA+GGG | + | chr1_1:79087683-79087702 | Msa0046760:exon | 30.0% | |
| GACAGGATAAAATTCTAAAC+AGG | - | chr1_1:79087767-79087786 | None:intergenic | 30.0% | |
| TGAAACAATACATCTTAGAC+AGG | - | chr1_1:79087784-79087803 | None:intergenic | 30.0% | |
| GAAAATGAACAAATGTACCT+AGG | + | chr1_1:79087813-79087832 | Msa0046760:three_prime_UTR | 30.0% | |
| GTGATATAGATCGGTGAAAT+TGG | - | chr1_1:79084198-79084217 | None:intergenic | 35.0% | |
| TTTCCTTCTTCGCAAATAAC+CGG | - | chr1_1:79084336-79084355 | None:intergenic | 35.0% | |
| GAAGGAAATGCGTATACTTA+TGG | + | chr1_1:79084348-79084367 | Msa0046760:CDS | 35.0% | |
| GAAATGCGTATACTTATGGT+CGG | + | chr1_1:79084352-79084371 | Msa0046760:CDS | 35.0% | |
| AAGCTTGAGCTTATAGAGAA+TGG | - | chr1_1:79084401-79084420 | None:intergenic | 35.0% | |
| ATTCTCTATAAGCTCAAGCT+TGG | + | chr1_1:79084400-79084419 | Msa0046760:CDS | 35.0% | |
| TGATAATTATGAAGCACGGA+TGG | + | chr1_1:79084488-79084507 | Msa0046760:intron | 35.0% | |
| CACGGATGGACAATTATATA+CGG | + | chr1_1:79084502-79084521 | Msa0046760:intron | 35.0% | |
| TTGCTTATAATAGTGACTGG+GGG | - | chr1_1:79084661-79084680 | None:intergenic | 35.0% | |
| ! | TTCCCTTTTCAGATTGTATC+TGG | - | chr1_1:79084745-79084764 | None:intergenic | 35.0% |
| CCTTGATAAAATACTCTCTC+TGG | - | chr1_1:79084787-79084806 | None:intergenic | 35.0% | |
| !!! | CCAGAGAGAGTATTTTATCA+AGG | + | chr1_1:79084784-79084803 | Msa0046760:intron | 35.0% |
| !! | ATTTGGTGTAGGGTTTAATG+TGG | + | chr1_1:79084843-79084862 | Msa0046760:intron | 35.0% |
| !! | AGAACATTAGCTTTACTGTG+TGG | + | chr1_1:79084881-79084900 | Msa0046760:CDS | 35.0% |
| !! | GAACATTAGCTTTACTGTGT+GGG | + | chr1_1:79084882-79084901 | Msa0046760:CDS | 35.0% |
| ! | ACGATTGGTTGAAATTGGTA+TGG | + | chr1_1:79085019-79085038 | Msa0046760:intron | 35.0% |
| TTGTTCCGTGATATGCTATT+TGG | + | chr1_1:79085271-79085290 | Msa0046760:intron | 35.0% | |
| ATGCAAGGGTTATCCAAAAT+AGG | - | chr1_1:79085591-79085610 | None:intergenic | 35.0% | |
| AATGTCTGAGAGTAATGCAA+GGG | - | chr1_1:79085605-79085624 | None:intergenic | 35.0% | |
| TTGTAGAACTGTCAAGTGTT+AGG | + | chr1_1:79085674-79085693 | Msa0046760:intron | 35.0% | |
| TTGTAGAACTGTCAAGTGTT+AGG | + | chr1_1:79085674-79085693 | Msa0046760:intron | 35.0% | |
| TCTGTTAGAACTGTAAAGGT+TGG | + | chr1_1:79086006-79086025 | Msa0046760:intron | 35.0% | |
| !! | TTGGTTGTTGTTGTTGTTTG+AGG | + | chr1_1:79086102-79086121 | Msa0046760:intron | 35.0% |
| TTTCCTATCATCAAGAGACT+TGG | + | chr1_1:79086215-79086234 | Msa0046760:intron | 35.0% | |
| TTCCTATCATCAAGAGACTT+GGG | + | chr1_1:79086216-79086235 | Msa0046760:intron | 35.0% | |
| ! | GGCCTAAAACTAACGATTTT+GGG | - | chr1_1:79086292-79086311 | None:intergenic | 35.0% |
| ATTATCCAATTAAGTGGGGT+CGG | - | chr1_1:79086415-79086434 | None:intergenic | 35.0% | |
| GCTAGAATTTACTAGGTAGT+CGG | + | chr1_1:79086548-79086567 | Msa0046760:intron | 35.0% | |
| !! | GAATTTGAACCAAGAGTGTT+TGG | + | chr1_1:79086764-79086783 | Msa0046760:intron | 35.0% |
| TAAAAACTGCCAAACACTCT+TGG | - | chr1_1:79086776-79086795 | None:intergenic | 35.0% | |
| TTTAATGTGCATTGGGTGTA+AGG | - | chr1_1:79086845-79086864 | None:intergenic | 35.0% | |
| ATGGTTAGAGGTCAAAAGTA+AGG | - | chr1_1:79086979-79086998 | None:intergenic | 35.0% | |
| CTTATTAGATCCGTCCTTTA+TGG | + | chr1_1:79087056-79087075 | Msa0046760:intron | 35.0% | |
| AGTAATGTCTCCATAAAGGA+CGG | - | chr1_1:79087069-79087088 | None:intergenic | 35.0% | |
| !!! | TACACAAGGGCTTATTTTTG+TGG | + | chr1_1:79087096-79087115 | Msa0046760:intron | 35.0% |
| GCTGAAATAACTGATAAGCT+AGG | + | chr1_1:79087358-79087377 | Msa0046760:CDS | 35.0% | |
| TCTACTTGTTCTATATGTGC+AGG | + | chr1_1:79087478-79087497 | Msa0046760:intron | 35.0% | |
| CTTAGTTATTCCGTTAGTCA+AGG | + | chr1_1:79087682-79087701 | Msa0046760:exon | 35.0% | |
| CGATTATGATTTCAGATGCT+CGG | + | chr1_1:79087731-79087750 | Msa0046760:three_prime_UTR | 35.0% | |
| AAATAACCGGCTGAATAGCT+TGG | - | chr1_1:79084323-79084342 | None:intergenic | 40.0% | |
| CTTGAGCTTATAGAGAATGG+TGG | - | chr1_1:79084398-79084417 | None:intergenic | 40.0% | |
| ! | AAACTTACCAATGGTGGGAA+TGG | - | chr1_1:79084440-79084459 | None:intergenic | 40.0% |
| AGGGTTTAATGTGGAAACTG+TGG | + | chr1_1:79084852-79084871 | Msa0046760:intron | 40.0% | |
| TTATGGGTTTCATGCGATAG+AGG | + | chr1_1:79085057-79085076 | Msa0046760:intron | 40.0% | |
| GTTGTAGCACTGTTGTATAG+CGG | + | chr1_1:79085330-79085349 | Msa0046760:intron | 40.0% | |
| GTTGTAGCACTGTTGTATAG+CGG | + | chr1_1:79085330-79085349 | Msa0046760:intron | 40.0% | |
| ! | AATTTTCTGCGATGCGTGAT+TGG | + | chr1_1:79085474-79085493 | Msa0046760:intron | 40.0% |
| ATTGGTTATTGGGAGTGAGT+TGG | - | chr1_1:79085544-79085563 | None:intergenic | 40.0% | |
| ACTCACTCCCAATAACCAAT+AGG | + | chr1_1:79085544-79085563 | Msa0046760:intron | 40.0% | |
| ! | CAAGAGGCCTATTGGTTATT+GGG | - | chr1_1:79085554-79085573 | None:intergenic | 40.0% |
| ! | TCAAGAGGCCTATTGGTTAT+TGG | - | chr1_1:79085555-79085574 | None:intergenic | 40.0% |
| AAACAAGTCAAGAGGCCTAT+TGG | - | chr1_1:79085562-79085581 | None:intergenic | 40.0% | |
| !! | CTTGTTTCTTGGGCCTATTT+TGG | + | chr1_1:79085575-79085594 | Msa0046760:intron | 40.0% |
| CAATGTCTGAGAGTAATGCA+AGG | - | chr1_1:79085606-79085625 | None:intergenic | 40.0% | |
| TGTGGGGGAAAATTGGAAAA+TGG | + | chr1_1:79085730-79085749 | Msa0046760:intron | 40.0% | |
| TGTGGGGGAAAATTGGAAAA+TGG | + | chr1_1:79085730-79085749 | Msa0046760:intron | 40.0% | |
| ! | AACCCAAGTCTCTTGATGAT+AGG | - | chr1_1:79086221-79086240 | None:intergenic | 40.0% |
| ! | CGGCCTAAAACTAACGATTT+TGG | - | chr1_1:79086293-79086312 | None:intergenic | 40.0% |
| CATACTGTATCACAATGGAG+AGG | - | chr1_1:79086578-79086597 | None:intergenic | 40.0% | |
| TGGCTCATACTGTATCACAA+TGG | - | chr1_1:79086583-79086602 | None:intergenic | 40.0% | |
| AAGTAAGGTGATTTACGCCA+AGG | - | chr1_1:79086964-79086983 | None:intergenic | 40.0% | |
| TAGCTTCAACAACACGATCT+CGG | - | chr1_1:79087135-79087154 | None:intergenic | 40.0% | |
| ! | AGATCGTGTTGTTGAAGCTA+GGG | + | chr1_1:79087135-79087154 | Msa0046760:CDS | 40.0% |
| TCAGCAGCATTCATAGCATT+TGG | - | chr1_1:79087343-79087362 | None:intergenic | 40.0% | |
| AGATTAAGGAGACGACCAAA+AGG | - | chr1_1:79087431-79087450 | None:intergenic | 40.0% | |
| TTCATAAAGTCCTTCACCAG+AGG | - | chr1_1:79087526-79087545 | None:intergenic | 40.0% | |
| TCTGGTGAAGGACTTTATGA+AGG | + | chr1_1:79087525-79087544 | Msa0046760:CDS | 40.0% | |
| GACTTTATGAAGGACTAGAC+TGG | + | chr1_1:79087535-79087554 | Msa0046760:CDS | 40.0% | |
| CTCAAACAACATTGCAAGCA+AGG | + | chr1_1:79087560-79087579 | Msa0046760:CDS | 40.0% | |
| TGATTTCAGATGCTCGGATA+TGG | + | chr1_1:79087737-79087756 | Msa0046760:three_prime_UTR | 40.0% | |
| ATCAGATCTCTCTTCGTGGT+TGG | - | chr1_1:79084107-79084126 | None:intergenic | 45.0% | |
| AGATCGGTGAAATTGGGATG+AGG | - | chr1_1:79084191-79084210 | None:intergenic | 45.0% | |
| CATTCACCAAGCTATTCAGC+CGG | + | chr1_1:79084314-79084333 | Msa0046760:CDS | 45.0% | |
| AGCTTTACTGTGTGGGATGT+TGG | + | chr1_1:79084889-79084908 | Msa0046760:CDS | 45.0% | |
| TTTACTGTGTGGGATGTTGG+TGG | + | chr1_1:79084892-79084911 | Msa0046760:CDS | 45.0% | |
| TTTGGTACATCGCTGTGTCT+TGG | + | chr1_1:79084950-79084969 | Msa0046760:intron | 45.0% | |
| !! | AGGCCTCTTGACTTGTTTCT+TGG | + | chr1_1:79085564-79085583 | Msa0046760:intron | 45.0% |
| !! | GGCCTCTTGACTTGTTTCTT+GGG | + | chr1_1:79085565-79085584 | Msa0046760:intron | 45.0% |
| TTTCCCCCACATCACTCTTT+GGG | - | chr1_1:79085721-79085740 | None:intergenic | 45.0% | |
| ! | TTTTCCCCCACATCACTCTT+TGG | - | chr1_1:79085722-79085741 | None:intergenic | 45.0% |
| AGAGTGATGTGGGGGAAAAT+TGG | + | chr1_1:79085723-79085742 | Msa0046760:intron | 45.0% | |
| GGGGGAAAATTGGAAAATGG+AGG | + | chr1_1:79085733-79085752 | Msa0046760:intron | 45.0% | |
| TTTCCCCCACATCACTCTTT+GGG | - | chr1_1:79085721-79085740 | None:intergenic | 45.0% | |
| ! | TTTTCCCCCACATCACTCTT+TGG | - | chr1_1:79085722-79085741 | None:intergenic | 45.0% |
| AGAGTGATGTGGGGGAAAAT+TGG | + | chr1_1:79085723-79085742 | Msa0046760:intron | 45.0% | |
| GGGGGAAAATTGGAAAATGG+AGG | + | chr1_1:79085733-79085752 | Msa0046760:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1_1:79086084-79086103 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1_1:79086085-79086104 | None:intergenic | 45.0% |
| !! | TTTGAGGTGCACTAGCTCTA+GGG | + | chr1_1:79086118-79086137 | Msa0046760:intron | 45.0% |
| !!! | CGTTAGTTTTAGGCCGTTAC+TGG | + | chr1_1:79086297-79086316 | Msa0046760:intron | 45.0% |
| ATTAAGTGGGGTCGGATACA+TGG | - | chr1_1:79086407-79086426 | None:intergenic | 45.0% | |
| TGTATCCGACCCCACTTAAT+TGG | + | chr1_1:79086407-79086426 | Msa0046760:intron | 45.0% | |
| GTCTCAGTCTATTGCTAACG+TGG | + | chr1_1:79086927-79086946 | Msa0046760:intron | 45.0% | |
| AGTCTATTGCTAACGTGGAC+TGG | + | chr1_1:79086932-79086951 | Msa0046760:intron | 45.0% | |
| ! | GAGATCGTGTTGTTGAAGCT+AGG | + | chr1_1:79087134-79087153 | Msa0046760:CDS | 45.0% |
| AAGCAGGGAAGAGGAGATTA+AGG | - | chr1_1:79087445-79087464 | None:intergenic | 45.0% | |
| GATGAGAATGGACAGAAGCA+GGG | - | chr1_1:79087460-79087479 | None:intergenic | 45.0% | |
| AGATGAGAATGGACAGAAGC+AGG | - | chr1_1:79087461-79087480 | None:intergenic | 45.0% | |
| TTCATGCAGCCCTTGACTAA+CGG | - | chr1_1:79087695-79087714 | None:intergenic | 45.0% | |
| GGAGATCAGATCTCTCTTCG+TGG | - | chr1_1:79084111-79084130 | None:intergenic | 50.0% | |
| CAGCCGGTTATTTGCGAAGA+AGG | + | chr1_1:79084330-79084349 | Msa0046760:CDS | 50.0% | |
| ! | GAGAATGGTGGTCTTACCAG+CGG | - | chr1_1:79084386-79084405 | None:intergenic | 50.0% |
| ! | CTTACCAATGGTGGGAATGG+TGG | - | chr1_1:79084437-79084456 | None:intergenic | 50.0% |
| ACATGTCCGACACCTAGACA+CGG | + | chr1_1:79084595-79084614 | Msa0046760:intron | 50.0% | |
| ! | GATTAGCCGTGTCTAGGTGT+CGG | - | chr1_1:79084604-79084623 | None:intergenic | 50.0% |
| ACCTAGACACGGCTAATCCT+AGG | + | chr1_1:79084606-79084625 | Msa0046760:intron | 50.0% | |
| !! | TCCTAGGATTAGCCGTGTCT+AGG | - | chr1_1:79084610-79084629 | None:intergenic | 50.0% |
| !! | AATCCTAGGAGTGTCGACGT+TGG | + | chr1_1:79084620-79084639 | Msa0046760:intron | 50.0% |
| TGTGTCTTGGCGGCGTAATA+TGG | + | chr1_1:79084963-79084982 | Msa0046760:intron | 50.0% | |
| GGCCCAAGAAACAAGTCAAG+AGG | - | chr1_1:79085570-79085589 | None:intergenic | 50.0% | |
| TATGGGCCCAAAGAGTGATG+TGG | + | chr1_1:79085712-79085731 | Msa0046760:intron | 50.0% | |
| ATGGGCCCAAAGAGTGATGT+GGG | + | chr1_1:79085713-79085732 | Msa0046760:intron | 50.0% | |
| ATGGAGGAAATTGGGTGACG+TGG | + | chr1_1:79085749-79085768 | Msa0046760:intron | 50.0% | |
| TATGGGCCCAAAGAGTGATG+TGG | + | chr1_1:79085712-79085731 | Msa0046760:intron | 50.0% | |
| ATGGGCCCAAAGAGTGATGT+GGG | + | chr1_1:79085713-79085732 | Msa0046760:intron | 50.0% | |
| ATGGAGGAAATTGGGTGACG+TGG | + | chr1_1:79085749-79085768 | Msa0046760:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr1_1:79086080-79086099 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1_1:79086086-79086105 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr1_1:79086083-79086102 | Msa0046760:intron | 50.0% | |
| ! | GTTTGAGGTGCACTAGCTCT+AGG | + | chr1_1:79086117-79086136 | Msa0046760:intron | 50.0% |
| !! | GCACTAGCTCTAGGGTTACA+AGG | + | chr1_1:79086126-79086145 | Msa0046760:intron | 50.0% |
| !! | ACGTGGACTGGCTTAAACCT+TGG | + | chr1_1:79086944-79086963 | Msa0046760:intron | 50.0% |
| GCTGCACAGGATGTTAAACG+AGG | + | chr1_1:79087162-79087181 | Msa0046760:CDS | 50.0% | |
| ATTCACTTCGTCAGCGTCAC+TGG | + | chr1_1:79087386-79087405 | Msa0046760:CDS | 50.0% | |
| AATGGACAGAAGCAGGGAAG+AGG | - | chr1_1:79087454-79087473 | None:intergenic | 50.0% | |
| ACATGTGCTACCTCTGGTGA+AGG | + | chr1_1:79087513-79087532 | Msa0046760:CDS | 50.0% | |
| GTCACCACCATTCCCACCAT+TGG | + | chr1_1:79084430-79084449 | Msa0046760:CDS | 55.0% | |
| GACATGTGTCGTGTCGGACA+CGG | - | chr1_1:79084582-79084601 | None:intergenic | 55.0% | |
| GTGTCGGACATGTGTCGTGT+CGG | - | chr1_1:79084588-79084607 | None:intergenic | 55.0% | |
| AGACCAACGTCGACACTCCT+AGG | - | chr1_1:79084626-79084645 | None:intergenic | 55.0% | |
| GGTACATCGCTGTGTCTTGG+CGG | + | chr1_1:79084953-79084972 | Msa0046760:intron | 55.0% | |
| TGGGCCCAAAGAGTGATGTG+GGG | + | chr1_1:79085714-79085733 | Msa0046760:intron | 55.0% | |
| TGGGCCCAAAGAGTGATGTG+GGG | + | chr1_1:79085714-79085733 | Msa0046760:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr1_1:79086072-79086091 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1_1:79086071-79086090 | Msa0046760:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1_1:79086072-79086091 | Msa0046760:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr1_1:79086078-79086097 | Msa0046760:intron | 55.0% | |
| CAGAGGTAGCACATGTGCTC+TGG | - | chr1_1:79087509-79087528 | None:intergenic | 55.0% | |
| CAGAGCACATGTGCTACCTC+TGG | + | chr1_1:79087507-79087526 | Msa0046760:CDS | 55.0% | |
| TGTGTCGTGTCGGACACGGT+CGG | - | chr1_1:79084578-79084597 | None:intergenic | 60.0% | |
| !! | TGTGTGGGATGTTGGTGGCC+AGG | + | chr1_1:79084897-79084916 | Msa0046760:CDS | 60.0% |
| !! | GGATGTTGGTGGCCAGGACA+AGG | + | chr1_1:79084903-79084922 | Msa0046760:CDS | 60.0% |
| GGGCCCAAAGAGTGATGTGG+GGG | + | chr1_1:79085715-79085734 | Msa0046760:intron | 60.0% | |
| GGGCCCAAAGAGTGATGTGG+GGG | + | chr1_1:79085715-79085734 | Msa0046760:intron | 60.0% | |
| AAGCTAGGGACGAGCTGCAC+AGG | + | chr1_1:79087149-79087168 | Msa0046760:CDS | 60.0% | |
| ATGGTCGGTCTCGATGCCGC+TGG | + | chr1_1:79084367-79084386 | Msa0046760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 79083935 | 79088009 | 79083935 | ID=Msa0046760;Name=Msa0046760 |
| chr1_1 | mRNA | 79083935 | 79088009 | 79083935 | ID=Msa0046760-mRNA-1;Parent=Msa0046760;Name=Msa0046760-mRNA-1;_AED=0.18;_eAED=0.18;_QI=192|0.75|0.77|0.88|0.75|0.66|9|323|188 |
| chr1_1 | exon | 79083935 | 79083959 | 79083935 | ID=Msa0046760-mRNA-1:exon:27206;Parent=Msa0046760-mRNA-1 |
| chr1_1 | exon | 79084014 | 79084166 | 79084014 | ID=Msa0046760-mRNA-1:exon:27207;Parent=Msa0046760-mRNA-1 |
| chr1_1 | exon | 79084290 | 79084451 | 79084290 | ID=Msa0046760-mRNA-1:exon:27208;Parent=Msa0046760-mRNA-1 |
| chr1_1 | exon | 79084854 | 79084924 | 79084854 | ID=Msa0046760-mRNA-1:exon:27209;Parent=Msa0046760-mRNA-1 |
| chr1_1 | exon | 79085854 | 79085936 | 79085854 | ID=Msa0046760-mRNA-1:exon:27210;Parent=Msa0046760-mRNA-1 |
| chr1_1 | exon | 79087126 | 79087183 | 79087126 | ID=Msa0046760-mRNA-1:exon:27211;Parent=Msa0046760-mRNA-1 |
| chr1_1 | exon | 79087289 | 79087407 | 79087289 | ID=Msa0046760-mRNA-1:exon:27212;Parent=Msa0046760-mRNA-1 |
| chr1_1 | exon | 79087500 | 79087581 | 79087500 | ID=Msa0046760-mRNA-1:exon:27213;Parent=Msa0046760-mRNA-1 |
| chr1_1 | exon | 79087681 | 79088009 | 79087681 | ID=Msa0046760-mRNA-1:exon:27214;Parent=Msa0046760-mRNA-1 |
| chr1_1 | five_prime_UTR | 79083935 | 79083959 | 79083935 | ID=Msa0046760-mRNA-1:five_prime_utr;Parent=Msa0046760-mRNA-1 |
| chr1_1 | five_prime_UTR | 79084014 | 79084166 | 79084014 | ID=Msa0046760-mRNA-1:five_prime_utr;Parent=Msa0046760-mRNA-1 |
| chr1_1 | five_prime_UTR | 79084290 | 79084303 | 79084290 | ID=Msa0046760-mRNA-1:five_prime_utr;Parent=Msa0046760-mRNA-1 |
| chr1_1 | CDS | 79084304 | 79084451 | 79084304 | ID=Msa0046760-mRNA-1:cds;Parent=Msa0046760-mRNA-1 |
| chr1_1 | CDS | 79084854 | 79084924 | 79084854 | ID=Msa0046760-mRNA-1:cds;Parent=Msa0046760-mRNA-1 |
| chr1_1 | CDS | 79085854 | 79085936 | 79085854 | ID=Msa0046760-mRNA-1:cds;Parent=Msa0046760-mRNA-1 |
| chr1_1 | CDS | 79087126 | 79087183 | 79087126 | ID=Msa0046760-mRNA-1:cds;Parent=Msa0046760-mRNA-1 |
| chr1_1 | CDS | 79087289 | 79087407 | 79087289 | ID=Msa0046760-mRNA-1:cds;Parent=Msa0046760-mRNA-1 |
| chr1_1 | CDS | 79087500 | 79087581 | 79087500 | ID=Msa0046760-mRNA-1:cds;Parent=Msa0046760-mRNA-1 |
| chr1_1 | CDS | 79087681 | 79087686 | 79087681 | ID=Msa0046760-mRNA-1:cds;Parent=Msa0046760-mRNA-1 |
| chr1_1 | three_prime_UTR | 79087687 | 79088009 | 79087687 | ID=Msa0046760-mRNA-1:three_prime_utr;Parent=Msa0046760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
