Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600410 | XP_024638296.1 | 98.052 | 154 | 3 | 0 | 1 | 154 | 1 | 154 | 1.49e-104 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600410 | sp|Q54SW1|Y2179_DICDI | 28.777 | 139 | 89 | 3 | 9 | 141 | 6 | 140 | 4.12e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015460 | Msa0600410 | -0.816550 | 5.219594e-52 | -8.615850e-47 |
| Msa0015480 | Msa0600410 | -0.800319 | 1.523849e-48 | -8.615850e-47 |
| Msa0037540 | Msa0600410 | 0.852249 | 5.224131e-61 | -8.615850e-47 |
| Msa0037590 | Msa0600410 | 0.855864 | 4.738351e-62 | -8.615850e-47 |
| Msa0042550 | Msa0600410 | -0.800508 | 1.394515e-48 | -8.615850e-47 |
| Msa0044540 | Msa0600410 | 0.851775 | 7.126417e-61 | -8.615850e-47 |
| Msa0054440 | Msa0600410 | -0.810632 | 1.046709e-50 | -8.615850e-47 |
| Msa0055070 | Msa0600410 | -0.810825 | 9.509349e-51 | -8.615850e-47 |
| Msa0057590 | Msa0600410 | -0.802163 | 6.390565e-49 | -8.615850e-47 |
| Msa0070170 | Msa0600410 | -0.807876 | 4.079146e-50 | -8.615850e-47 |
| Msa0085360 | Msa0600410 | 0.817876 | 2.626438e-52 | -8.615850e-47 |
| Msa0090390 | Msa0600410 | -0.812833 | 3.475495e-51 | -8.615850e-47 |
| Msa0091250 | Msa0600410 | 0.805884 | 1.076177e-49 | -8.615850e-47 |
| Msa0092410 | Msa0600410 | -0.809030 | 2.314529e-50 | -8.615850e-47 |
| Msa0101020 | Msa0600410 | -0.812982 | 3.223050e-51 | -8.615850e-47 |
| Msa0104700 | Msa0600410 | -0.806148 | 9.467759e-50 | -8.615850e-47 |
| Msa0109590 | Msa0600410 | -0.829826 | 4.141768e-55 | -8.615850e-47 |
| Msa0129190 | Msa0600410 | 0.817100 | 3.927804e-52 | -8.615850e-47 |
| Msa0140500 | Msa0600410 | 0.811895 | 5.568644e-51 | -8.615850e-47 |
| Msa0145110 | Msa0600410 | -0.801920 | 7.169883e-49 | -8.615850e-47 |
| Msa0146770 | Msa0600410 | -0.821331 | 4.273959e-53 | -8.615850e-47 |
| Msa0150990 | Msa0600410 | -0.804438 | 2.160346e-49 | -8.615850e-47 |
| Msa0177700 | Msa0600410 | 0.848795 | 4.881864e-60 | -8.615850e-47 |
| Msa0178510 | Msa0600410 | -0.822061 | 2.898087e-53 | -8.615850e-47 |
| Msa0185510 | Msa0600410 | -0.825409 | 4.762070e-54 | -8.615850e-47 |
| Msa0188730 | Msa0600410 | 0.820767 | 5.764695e-53 | -8.615850e-47 |
| Msa0196020 | Msa0600410 | 0.805552 | 1.263110e-49 | -8.615850e-47 |
| Msa0197660 | Msa0600410 | -0.806038 | 9.986742e-50 | -8.615850e-47 |
| Msa0210410 | Msa0600410 | 0.853618 | 2.120893e-61 | -8.615850e-47 |
| Msa0223120 | Msa0600410 | -0.803595 | 3.234830e-49 | -8.615850e-47 |
| Msa0231660 | Msa0600410 | -0.813458 | 2.533672e-51 | -8.615850e-47 |
| Msa0236070 | Msa0600410 | -0.824800 | 6.633717e-54 | -8.615850e-47 |
| Msa0238230 | Msa0600410 | -0.820969 | 5.178137e-53 | -8.615850e-47 |
| Msa0387370 | Msa0600410 | -0.804139 | 2.493214e-49 | -8.615850e-47 |
| Msa0394410 | Msa0600410 | 0.801534 | 8.607143e-49 | -8.615850e-47 |
| Msa0436920 | Msa0600410 | 0.833640 | 4.749587e-56 | -8.615850e-47 |
| Msa0437400 | Msa0600410 | -0.824126 | 9.558035e-54 | -8.615850e-47 |
| Msa0474590 | Msa0600410 | -0.811332 | 7.381463e-51 | -8.615850e-47 |
| Msa0478840 | Msa0600410 | 0.813330 | 2.703891e-51 | -8.615850e-47 |
| Msa0481280 | Msa0600410 | -0.806473 | 8.086791e-50 | -8.615850e-47 |
| Msa0239800 | Msa0600410 | -0.808210 | 3.463470e-50 | -8.615850e-47 |
| Msa0255850 | Msa0600410 | -0.803221 | 3.865709e-49 | -8.615850e-47 |
| Msa0261360 | Msa0600410 | -0.801321 | 9.516141e-49 | -8.615850e-47 |
| Msa0268090 | Msa0600410 | -0.816299 | 5.939341e-52 | -8.615850e-47 |
| Msa0269560 | Msa0600410 | -0.800872 | 1.175289e-48 | -8.615850e-47 |
| Msa0270170 | Msa0600410 | 0.835130 | 2.007630e-56 | -8.615850e-47 |
| Msa0317510 | Msa0600410 | -0.807136 | 5.857814e-50 | -8.615850e-47 |
| Msa0335320 | Msa0600410 | 0.833724 | 4.524543e-56 | -8.615850e-47 |
| Msa0514610 | Msa0600410 | -0.808545 | 2.938550e-50 | -8.615850e-47 |
| Msa0521670 | Msa0600410 | -0.805808 | 1.116257e-49 | -8.615850e-47 |
| Msa0532930 | Msa0600410 | -0.806874 | 6.655900e-50 | -8.615850e-47 |
| Msa0542090 | Msa0600410 | -0.806251 | 9.005321e-50 | -8.615850e-47 |
| Msa0542130 | Msa0600410 | -0.803226 | 3.856438e-49 | -8.615850e-47 |
| Msa0549590 | Msa0600410 | -0.801348 | 9.392700e-49 | -8.615850e-47 |
| Msa0554290 | Msa0600410 | -0.800543 | 1.371759e-48 | -8.615850e-47 |
| Msa0600410 | Msa0605000 | -0.808979 | 2.372725e-50 | -8.615850e-47 |
| Msa0600410 | Msa0619210 | -0.811637 | 6.336939e-51 | -8.615850e-47 |
| Msa0600410 | Msa0619920 | -0.800222 | 1.594467e-48 | -8.615850e-47 |
| Msa0600410 | Msa0621080 | 0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa0600410 | Msa0626910 | -0.823545 | 1.307648e-53 | -8.615850e-47 |
| Msa0600410 | Msa0654010 | -0.808676 | 2.754988e-50 | -8.615850e-47 |
| Msa0600410 | Msa0667740 | -0.801464 | 8.892491e-49 | -8.615850e-47 |
| Msa0600410 | Msa0679290 | 0.800588 | 1.343461e-48 | -8.615850e-47 |
| Msa0600410 | Msa0682090 | -0.815236 | 1.024966e-51 | -8.615850e-47 |
| Msa0600410 | Msa0682140 | -0.814328 | 1.629062e-51 | -8.615850e-47 |
| Msa0600410 | Msa0685140 | -0.817814 | 2.713482e-52 | -8.615850e-47 |
| Msa0600410 | Msa0706400 | -0.804302 | 2.305695e-49 | -8.615850e-47 |
| Msa0600410 | Msa0715410 | -0.836535 | 8.839501e-57 | -8.615850e-47 |
| Msa0600410 | Msa0721340 | -0.800560 | 1.361050e-48 | -8.615850e-47 |
| Msa0600410 | Msa0737560 | -0.814178 | 1.758435e-51 | -8.615850e-47 |
| Msa0600410 | Msa0749440 | -0.821180 | 4.631079e-53 | -8.615850e-47 |
| Msa0600410 | Msa0751850 | -0.828767 | 7.487299e-55 | -8.615850e-47 |
| Msa0600410 | Msa0790440 | 0.823389 | 1.422211e-53 | -8.615850e-47 |
| Msa0600410 | Msa0793140 | 0.820895 | 5.385557e-53 | -8.615850e-47 |
| Msa0600410 | Msa0802410 | -0.812736 | 3.648503e-51 | -8.615850e-47 |
| Msa0600410 | Msa0805430 | -0.803901 | 2.793888e-49 | -8.615850e-47 |
| Msa0600410 | Msa0826760 | -0.814330 | 1.628019e-51 | -8.615850e-47 |
| Msa0600410 | Msa0856910 | -0.800578 | 1.349831e-48 | -8.615850e-47 |
| Msa0600410 | Msa0857370 | -0.820482 | 6.700993e-53 | -8.615850e-47 |
| Msa0600410 | Msa0865890 | -0.806526 | 7.881657e-50 | -8.615850e-47 |
| Msa0600410 | Msa0901320 | -0.817258 | 3.620344e-52 | -8.615850e-47 |
| Msa0600410 | Msa0901450 | -0.815366 | 9.591692e-52 | -8.615850e-47 |
| Msa0600410 | Msa0902830 | -0.819320 | 1.235876e-52 | -8.615850e-47 |
| Msa0600410 | Msa0909000 | 0.820488 | 6.678993e-53 | -8.615850e-47 |
| Msa0600410 | Msa0942550 | 0.807327 | 5.336054e-50 | -8.615850e-47 |
| Msa0600410 | Msa0945120 | -0.813642 | 2.308345e-51 | -8.615850e-47 |
| Msa0600410 | Msa0945440 | -0.813707 | 2.233044e-51 | -8.615850e-47 |
| Msa0600410 | Msa0947530 | 0.820779 | 5.726387e-53 | -8.615850e-47 |
| Msa0600410 | Msa0973600 | -0.808314 | 3.291422e-50 | -8.615850e-47 |
| Msa0600410 | Msa0980020 | -0.806822 | 6.825243e-50 | -8.615850e-47 |
| Msa0600410 | Msa1001350 | -0.828635 | 8.057435e-55 | -8.615850e-47 |
| Msa0600410 | Msa1025080 | -0.820497 | 6.647721e-53 | -8.615850e-47 |
| Msa0600410 | Msa1063420 | -0.800806 | 1.212709e-48 | -8.615850e-47 |
| Msa0600410 | Msa1063690 | -0.822261 | 2.603291e-53 | -8.615850e-47 |
| Msa0600410 | Msa1064250 | -0.816244 | 6.111251e-52 | -8.615850e-47 |
| Msa0600410 | Msa1080800 | -0.808774 | 2.625199e-50 | -8.615850e-47 |
| Msa0600410 | Msa1087510 | 0.818257 | 2.154633e-52 | -8.615850e-47 |
| Msa0600410 | Msa1103660 | 0.817113 | 3.902286e-52 | -8.615850e-47 |
| Msa0600410 | Msa1115280 | -0.815834 | 7.546667e-52 | -8.615850e-47 |
| Msa0600410 | Msa1118940 | -0.804191 | 2.431871e-49 | -8.615850e-47 |
| Msa0600410 | Msa1162830 | -0.800540 | 1.373915e-48 | -8.615850e-47 |
| Msa0600410 | Msa1163540 | -0.832764 | 7.845048e-56 | -8.615850e-47 |
| Msa0600410 | Msa1210110 | -0.801497 | 8.756561e-49 | -8.615850e-47 |
| Msa0600410 | Msa1211050 | 0.810362 | 1.196841e-50 | -8.615850e-47 |
| Msa0600410 | Msa1211740 | -0.813484 | 2.500748e-51 | -8.615850e-47 |
| Msa0600410 | Msa1219170 | -0.803013 | 4.267901e-49 | -8.615850e-47 |
| Msa0600410 | Msa1219810 | -0.801243 | 9.872965e-49 | -8.615850e-47 |
| Msa0600410 | Msa1276340 | -0.813411 | 2.595118e-51 | -8.615850e-47 |
| Msa0600410 | Msa1286550 | -0.801562 | 8.490251e-49 | -8.615850e-47 |
| Msa0600410 | Msa1286610 | -0.800742 | 1.249776e-48 | -8.615850e-47 |
| Msa0600410 | Msa1296460 | 0.801693 | 7.980975e-49 | -8.615850e-47 |
| Msa0600410 | Msa1332050 | -0.820326 | 7.276456e-53 | -8.615850e-47 |
| Msa0600410 | Msa1340040 | 0.805414 | 1.350498e-49 | -8.615850e-47 |
| Msa0600410 | Msa1340260 | -0.807674 | 4.504045e-50 | -8.615850e-47 |
| Msa0600410 | Msa1340270 | -0.803596 | 3.232135e-49 | -8.615850e-47 |
| Msa0600410 | Msa1371940 | -0.821692 | 3.526490e-53 | -8.615850e-47 |
| Msa0600410 | Msa1372150 | -0.805790 | 1.126237e-49 | -8.615850e-47 |
| Msa0600410 | Msa1381480 | -0.810030 | 1.411625e-50 | -8.615850e-47 |
| Msa0600410 | Msa1382790 | -0.800735 | 1.253628e-48 | -8.615850e-47 |
| Msa0600410 | Msa1390740 | -0.808735 | 2.675800e-50 | -8.615850e-47 |
| Msa0600410 | Msa1403530 | 0.856807 | 2.505536e-62 | -8.615850e-47 |
| Msa0600410 | Msa1405220 | -0.802839 | 4.636241e-49 | -8.615850e-47 |
| Msa0600410 | Msa1437210 | -0.802403 | 5.704580e-49 | -8.615850e-47 |
| Msa0600410 | Msa1443610 | -0.820269 | 7.497497e-53 | -8.615850e-47 |
| Msa0600410 | Msa1445390 | 0.810282 | 1.245739e-50 | -8.615850e-47 |
| Msa0600410 | Msa1449340 | 0.807522 | 4.850827e-50 | -8.615850e-47 |
| Msa0600410 | Msa1450550 | 0.802006 | 6.885145e-49 | -8.615850e-47 |
| Msa0600410 | Msa1461550 | -0.806223 | 9.131281e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600410 | MtrunA17_Chr4g0025381 | 98.052 | 154 | 3 | 0 | 1 | 154 | 1 | 154 | 1.37e-108 | 305 |
| Msa0600410 | MtrunA17_Chr1g0176921 | 56.000 | 125 | 55 | 0 | 30 | 154 | 31 | 155 | 5.57e-48 | 152 |
| Msa0600410 | MtrunA17_Chr1g0176931 | 56.000 | 125 | 55 | 0 | 30 | 154 | 32 | 156 | 7.80e-45 | 144 |
| Msa0600410 | MtrunA17_Chr5g0439431 | 43.077 | 130 | 72 | 1 | 27 | 154 | 33 | 162 | 9.82e-34 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600410 | AT3G44100.1 | 61.765 | 136 | 51 | 1 | 16 | 151 | 15 | 149 | 9.20e-55 | 169 |
| Msa0600410 | AT3G11780.1 | 50.694 | 144 | 71 | 0 | 11 | 154 | 10 | 153 | 5.26e-48 | 152 |
| Msa0600410 | AT5G06480.1 | 51.163 | 129 | 63 | 0 | 26 | 154 | 25 | 153 | 4.63e-44 | 142 |
| Msa0600410 | AT3G11780.2 | 45.062 | 162 | 71 | 1 | 11 | 154 | 10 | 171 | 1.32e-43 | 142 |
Find 70 sgRNAs with CRISPR-Local
Find 467 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCAGGTAAAGCTCTTTA+TGG | 0.233971 | 4_2:-41570335 | Msa0600410:intron |
| CATATTCATGCAAATTGAAT+TGG | 0.300925 | 4_2:-41565099 | Msa0600410:three_prime_UTR |
| TAAATTTAATGCAAGTTAAC+TGG | 0.302105 | 4_2:+41565398 | None:intergenic |
| TTATTATTATAATAATTTAC+AGG | 0.319072 | 4_2:-41571834 | Msa0600410:five_prime_UTR |
| TATGGCGGAGATGTGGTAAT+TGG | 0.323192 | 4_2:-41570317 | Msa0600410:CDS |
| TCTTCCTTCATTTGTGAACT+TGG | 0.326877 | 4_2:-41565146 | Msa0600410:three_prime_UTR |
| TATAATAATTTACAGGTGTT+TGG | 0.331611 | 4_2:-41571827 | Msa0600410:five_prime_UTR |
| TAATTGGAGTTTCCTATGTT+GGG | 0.358950 | 4_2:-41570301 | Msa0600410:CDS |
| TTTAAGATCTCAGCTACTTC+TGG | 0.359491 | 4_2:-41571261 | Msa0600410:intron |
| GCAGGGGCACCACTGACAAC+AGG | 0.374041 | 4_2:+41571288 | None:intergenic |
| AATGTCATCTTTAGAGCATA+AGG | 0.378773 | 4_2:+41565439 | None:intergenic |
| GGAGAGAAGAAGAAAGAGAT+TGG | 0.382690 | 4_2:+41571632 | None:intergenic |
| ACAAAATTTCCATTAGCAAC+TGG | 0.385673 | 4_2:+41570230 | None:intergenic |
| GTATCCTGTCCAGTTGCTAA+TGG | 0.399485 | 4_2:-41570239 | Msa0600410:CDS |
| AGAAGTAGCTGAGATCTTAA+AGG | 0.414793 | 4_2:+41571263 | None:intergenic |
| TGCTCTAAAGATGACATTGA+AGG | 0.421263 | 4_2:-41565434 | Msa0600410:CDS |
| TTTATTAAAATTTATATTGT+GGG | 0.425854 | 4_2:+41565017 | None:intergenic |
| TGAAAGGAAGAGGGTGGAGA+AGG | 0.431347 | 4_2:+41571611 | None:intergenic |
| GTAATTGGAGTTTCCTATGT+TGG | 0.445028 | 4_2:-41570302 | Msa0600410:CDS |
| GCACCACTGACAACAGGGTT+TGG | 0.451179 | 4_2:+41571294 | None:intergenic |
| TATTCAATAAATAACTCAAC+AGG | 0.452689 | 4_2:-41571757 | Msa0600410:five_prime_UTR |
| TCAATTCCAGTCACCTTCAC+AGG | 0.458442 | 4_2:+41571324 | None:intergenic |
| GAGTAATTGCAGGTAGTGTC+TGG | 0.460782 | 4_2:+41570195 | None:intergenic |
| GACTATCCTGTGAAGGTGAC+TGG | 0.461612 | 4_2:-41571330 | Msa0600410:CDS |
| CAGTGAATGGTGAACTCATA+AGG | 0.461988 | 4_2:-41565180 | Msa0600410:three_prime_UTR |
| AAATTTATATTGTGGGGTGG+AGG | 0.469155 | 4_2:+41565024 | None:intergenic |
| TATACTCTGCATGATTGATC+TGG | 0.471445 | 4_2:-41565329 | Msa0600410:three_prime_UTR |
| TACTTCCTTACACAGATCAA+TGG | 0.478210 | 4_2:+41570259 | None:intergenic |
| ATCTGTGTATGTAGATAAGA+AGG | 0.478616 | 4_2:-41571355 | Msa0600410:intron |
| TAATCCAAGTTCACAAATGA+AGG | 0.479927 | 4_2:+41565142 | None:intergenic |
| GAGAGAAGAAGAAAGAGATT+GGG | 0.492297 | 4_2:+41571633 | None:intergenic |
| TGAAACCATTGATCTGTGTA+AGG | 0.498467 | 4_2:-41570264 | Msa0600410:CDS |
| TATATACACTATACAGTGAA+TGG | 0.505709 | 4_2:-41565193 | Msa0600410:intron |
| GCTGAGATCTTAAAGGTGGC+AGG | 0.517736 | 4_2:+41571270 | None:intergenic |
| ATTTGTCACTCACTGTTACA+AGG | 0.518535 | 4_2:-41571704 | Msa0600410:five_prime_UTR |
| ATTTCCATTAGCAACTGGAC+AGG | 0.518555 | 4_2:+41570235 | None:intergenic |
| AATTTATATTGTGGGGTGGA+GGG | 0.520928 | 4_2:+41565025 | None:intergenic |
| TAACTTTAGCTTGAGATGAA+AGG | 0.521399 | 4_2:+41571595 | None:intergenic |
| ACAGATCAATGGTTTCAGAA+TGG | 0.526306 | 4_2:+41570270 | None:intergenic |
| TAGCTTGAGATGAAAGGAAG+AGG | 0.538470 | 4_2:+41571601 | None:intergenic |
| TTAAAATTTATATTGTGGGG+TGG | 0.543538 | 4_2:+41565021 | None:intergenic |
| TTACAGGTGTTTGGTTGATG+AGG | 0.553259 | 4_2:-41571818 | Msa0600410:five_prime_UTR |
| ATGGACAGGCACCCCAACAT+AGG | 0.561157 | 4_2:+41570289 | None:intergenic |
| ACTCTGCATGATTGATCTGG+AGG | 0.561628 | 4_2:-41565326 | Msa0600410:three_prime_UTR |
| TTGAGATGAAAGGAAGAGGG+TGG | 0.564807 | 4_2:+41571605 | None:intergenic |
| TTATTAAAATTTATATTGTG+GGG | 0.570814 | 4_2:+41565018 | None:intergenic |
| TACAGGTGTTTGGTTGATGA+GGG | 0.573106 | 4_2:-41571817 | Msa0600410:five_prime_UTR |
| CTCTGCATGATTGATCTGGA+GGG | 0.583977 | 4_2:-41565325 | Msa0600410:three_prime_UTR |
| CTGAGATCTTAAAGGTGGCA+GGG | 0.584959 | 4_2:+41571271 | None:intergenic |
| TAGTCACAATTACTCTTGAA+AGG | 0.585261 | 4_2:+41565244 | None:intergenic |
| AAAGTTACTTTCAAATATTG+CGG | 0.585934 | 4_2:-41571579 | Msa0600410:intron |
| TGAGATCTTAAAGGTGGCAG+GGG | 0.586631 | 4_2:+41571272 | None:intergenic |
| AGCTCTTTATGGCGGAGATG+TGG | 0.589630 | 4_2:-41570324 | Msa0600410:CDS |
| CTAACCGGTGGAGTAATTGC+AGG | 0.597019 | 4_2:+41570185 | None:intergenic |
| AATTGGAGTTTCCTATGTTG+GGG | 0.597198 | 4_2:-41570300 | Msa0600410:CDS |
| GGGAAGAGAATGAAACTCCA+TGG | 0.597653 | 4_2:+41571653 | None:intergenic |
| CACTCACTGTTACAAGGACA+AGG | 0.600038 | 4_2:-41571698 | Msa0600410:five_prime_UTR |
| GTTTGGTTGATGAGGGTGCA+CGG | 0.602903 | 4_2:-41571810 | Msa0600410:five_prime_UTR |
| CACTGTTACAAGGACAAGGA+AGG | 0.603779 | 4_2:-41571694 | Msa0600410:five_prime_UTR |
| AGCTTGAGATGAAAGGAAGA+GGG | 0.607072 | 4_2:+41571602 | None:intergenic |
| GAAGGCTGACTATCCTGTGA+AGG | 0.613078 | 4_2:-41571337 | Msa0600410:CDS |
| ACTACCTGCAATTACTCCAC+CGG | 0.625559 | 4_2:-41570189 | Msa0600410:intron |
| CAGGGGCACCACTGACAACA+GGG | 0.629803 | 4_2:+41571289 | None:intergenic |
| TCAATGGTTTCAGAATGGAC+AGG | 0.634798 | 4_2:+41570275 | None:intergenic |
| AGTAGCTGAGATCTTAAAGG+TGG | 0.634897 | 4_2:+41571266 | None:intergenic |
| TTACCAAACCCTGTTGTCAG+TGG | 0.649255 | 4_2:-41571297 | Msa0600410:CDS |
| GATGACATTGAAGGATGACA+AGG | 0.656351 | 4_2:-41565425 | Msa0600410:CDS |
| ATGACATTGAAGGATGACAA+GGG | 0.683261 | 4_2:-41565424 | Msa0600410:CDS |
| GCAGGTAAAGCTCTTTATGG+CGG | 0.686450 | 4_2:-41570332 | Msa0600410:intron |
| GAATTGGAAAATGAAATGAG+AGG | 0.690156 | 4_2:-41565083 | Msa0600410:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAATTTAAAAAATTGTA+GGG | - | chr4_2:41570047-41570066 | Msa0600410:intron | 10.0% |
| !!! | TGTTTTAATAATTTTTTACT+TGG | - | chr4_2:41571317-41571336 | Msa0600410:CDS | 10.0% |
| !!! | TTTAATTTTAAAATCGTTTT+CGG | - | chr4_2:41571468-41571487 | Msa0600410:intron | 10.0% |
| !! | TTATTAAAATTTATATTGTG+GGG | + | chr4_2:41571832-41571851 | None:intergenic | 10.0% |
| !!! | TTTTTTCATAATACTGAATT+GGG | + | chr4_2:41565400-41565419 | None:intergenic | 15.0% |
| !! | TATATTTAAACACAAAATCA+TGG | + | chr4_2:41565891-41565910 | None:intergenic | 15.0% |
| !!! | TTTTGTGTTTAAATATATAC+CGG | - | chr4_2:41565894-41565913 | Msa0600410:intron | 15.0% |
| !! | TAAATGCATCAAATATTTAT+GGG | + | chr4_2:41568740-41568759 | None:intergenic | 15.0% |
| !!! | TCACTATAAAAGTAAATTTT+TGG | - | chr4_2:41569280-41569299 | Msa0600410:intron | 15.0% |
| !!! | CACTATAAAAGTAAATTTTT+GGG | - | chr4_2:41569281-41569300 | Msa0600410:intron | 15.0% |
| !!! | ACTATAAAAGTAAATTTTTG+GGG | - | chr4_2:41569282-41569301 | Msa0600410:intron | 15.0% |
| !! | GAGATAATTTAAAAAATTGT+AGG | - | chr4_2:41570046-41570065 | Msa0600410:intron | 15.0% |
| !! | GATAATTTAAAAAATTGTAG+GGG | - | chr4_2:41570048-41570067 | Msa0600410:intron | 15.0% |
| !! | AAAAAAAAAATTCAGAGAAA+AGG | + | chr4_2:41570111-41570130 | None:intergenic | 15.0% |
| !! | TATAATAATTTACAGGTGTT+TGG | - | chr4_2:41565020-41565039 | Msa0600410:three_prime_UTR | 20.0% |
| !! | TATTCAATAAATAACTCAAC+AGG | - | chr4_2:41565090-41565109 | Msa0600410:three_prime_UTR | 20.0% |
| !!! | AAAGTTACTTTCAAATATTG+CGG | - | chr4_2:41565268-41565287 | Msa0600410:three_prime_UTR | 20.0% |
| !! | CATAGAAATAGAAATGAATT+GGG | + | chr4_2:41565333-41565352 | None:intergenic | 20.0% |
| !! | TCATAGAAATAGAAATGAAT+TGG | + | chr4_2:41565334-41565353 | None:intergenic | 20.0% |
| !!! | CTTTTTTCATAATACTGAAT+TGG | + | chr4_2:41565401-41565420 | None:intergenic | 20.0% |
| !!! | AATATCAACATCATTTTGAA+TGG | - | chr4_2:41565684-41565703 | Msa0600410:intron | 20.0% |
| !!! | AATTTTTGTTTTACTTTGCA+AGG | - | chr4_2:41566925-41566944 | Msa0600410:intron | 20.0% |
| !!! | AAGATTAGTTTAATTACTCT+TGG | + | chr4_2:41566966-41566985 | None:intergenic | 20.0% |
| !! | ACATGTTATAACATATTGAA+AGG | + | chr4_2:41567017-41567036 | None:intergenic | 20.0% |
| !!! | TGTTCACTAAAAAAACTTTT+TGG | - | chr4_2:41567516-41567535 | Msa0600410:intron | 20.0% |
| !!! | GTTCACTAAAAAAACTTTTT+GGG | - | chr4_2:41567517-41567536 | Msa0600410:intron | 20.0% |
| !!! | TTCACTAAAAAAACTTTTTG+GGG | - | chr4_2:41567518-41567537 | Msa0600410:intron | 20.0% |
| !!! | TTAAAAACTCTGAAATTTGA+TGG | - | chr4_2:41567548-41567567 | Msa0600410:intron | 20.0% |
| !!! | CCATTTTCTCAAATTATTAA+CGG | + | chr4_2:41567691-41567710 | None:intergenic | 20.0% |
| !! | TAGTTATTTACAAATCTTGT+TGG | + | chr4_2:41568193-41568212 | None:intergenic | 20.0% |
| !!! | AAGATAAGGAACAAATATTT+TGG | - | chr4_2:41568254-41568273 | Msa0600410:intron | 20.0% |
| !!! | TGTTTGGAAGTTAAATTTTA+AGG | - | chr4_2:41568669-41568688 | Msa0600410:intron | 20.0% |
| !! | GTAAATGCATCAAATATTTA+TGG | + | chr4_2:41568741-41568760 | None:intergenic | 20.0% |
| !!! | GAATTTCTTTATGTTGTTTT+TGG | - | chr4_2:41568777-41568796 | Msa0600410:intron | 20.0% |
| !!! | CTATAAAAGTAAATTTTTGG+GGG | - | chr4_2:41569283-41569302 | Msa0600410:intron | 20.0% |
| !!! | TATAAAAGTAAATTTTTGGG+GGG | - | chr4_2:41569284-41569303 | Msa0600410:intron | 20.0% |
| !! | AAAACTAAGAAATTTGATAG+TGG | - | chr4_2:41569316-41569335 | Msa0600410:intron | 20.0% |
| !!! | CCATTTTCTCAAATTATTAA+CGG | + | chr4_2:41567691-41567710 | None:intergenic | 20.0% |
| !! | AATATATTTGTTCCTTACAT+TGG | + | chr4_2:41569916-41569935 | None:intergenic | 20.0% |
| !! | AATGATTGAGGAATAAAAAA+TGG | + | chr4_2:41570260-41570279 | None:intergenic | 20.0% |
| !! | CAAAAATGATGATTGAATAA+AGG | - | chr4_2:41570308-41570327 | Msa0600410:CDS | 20.0% |
| !! | TTAAGTTTGGTTAATTGAAT+TGG | - | chr4_2:41570824-41570843 | Msa0600410:intron | 20.0% |
| !!! | ATTGAATTGGTTTAAATTTG+TGG | - | chr4_2:41570837-41570856 | Msa0600410:intron | 20.0% |
| !! | AAAAAACTGAACCATTTAAA+TGG | + | chr4_2:41570876-41570895 | None:intergenic | 20.0% |
| !!! | TAAATGGTTCAGTTTTTTTA+TGG | - | chr4_2:41570878-41570897 | Msa0600410:intron | 20.0% |
| !!! | TTTACTTGGATCTTTTATTT+AGG | - | chr4_2:41571331-41571350 | Msa0600410:CDS | 20.0% |
| !!! | TTACTTGGATCTTTTATTTA+GGG | - | chr4_2:41571332-41571351 | Msa0600410:CDS | 20.0% |
| !! | TGTTAAAAACAAGATAGAAA+AGG | + | chr4_2:41571361-41571380 | None:intergenic | 20.0% |
| !! | TAAATTTAATGCAAGTTAAC+TGG | + | chr4_2:41571452-41571471 | None:intergenic | 20.0% |
| !! | TGAATTGAATTTTGTTCAGA+TGG | + | chr4_2:41565070-41565089 | None:intergenic | 25.0% |
| !! | AGTTAATCATGTTTAGTTCA+TGG | - | chr4_2:41565727-41565746 | Msa0600410:intron | 25.0% |
| !! | TCTTTTTAACCACTATTTTC+AGG | - | chr4_2:41565838-41565857 | Msa0600410:intron | 25.0% |
| ! | AAATATATACCGGAAAATTG+CGG | - | chr4_2:41565904-41565923 | Msa0600410:intron | 25.0% |
| ! | ATGTGGTTAATTATGTTAAG+TGG | + | chr4_2:41566014-41566033 | None:intergenic | 25.0% |
| !!! | TATTTTGACATCAAATTGGA+TGG | + | chr4_2:41566053-41566072 | None:intergenic | 25.0% |
| !!! | CTGTTATTTTGACATCAAAT+TGG | + | chr4_2:41566057-41566076 | None:intergenic | 25.0% |
| ! | CAATCAACACATAAAAATCA+GGG | + | chr4_2:41566225-41566244 | None:intergenic | 25.0% |
| !! | TATTTGTTCCTTATGCTTTT+GGG | - | chr4_2:41566418-41566437 | Msa0600410:intron | 25.0% |
| ! | AATTTAGTAGAATAGACAAG+TGG | + | chr4_2:41566467-41566486 | None:intergenic | 25.0% |
| !!! | CTTCCTTTGATATCTTTTTT+GGG | - | chr4_2:41566759-41566778 | Msa0600410:intron | 25.0% |
| ! | TTGAAGTTATAAACCCAAAA+GGG | + | chr4_2:41566907-41566926 | None:intergenic | 25.0% |
| ! | ATTGAAGTTATAAACCCAAA+AGG | + | chr4_2:41566908-41566927 | None:intergenic | 25.0% |
| ! | TTAAAATGTCAAACGTCATT+TGG | - | chr4_2:41566987-41567006 | Msa0600410:intron | 25.0% |
| !!! | TGACTTTTGATTTTACATGT+AGG | + | chr4_2:41567196-41567215 | None:intergenic | 25.0% |
| ! | AAGTCAATGAATCAATGTAA+TGG | - | chr4_2:41567438-41567457 | Msa0600410:intron | 25.0% |
| !!! | AATGAATCAATGTAATGGAT+TGG | - | chr4_2:41567443-41567462 | Msa0600410:intron | 25.0% |
| !! | TCACTAAAAAAACTTTTTGG+GGG | - | chr4_2:41567519-41567538 | Msa0600410:intron | 25.0% |
| ! | CCGTTAATAATTTGAGAAAA+TGG | - | chr4_2:41567688-41567707 | Msa0600410:intron | 25.0% |
| ! | AGAAGATGTTATTGTTCAAA+AGG | + | chr4_2:41567822-41567841 | None:intergenic | 25.0% |
| !! | TGTTTAAAATGATCTAAGAG+AGG | + | chr4_2:41567940-41567959 | None:intergenic | 25.0% |
| ! | GTAAATAACTATAGTAGAGA+TGG | - | chr4_2:41568202-41568221 | Msa0600410:intron | 25.0% |
| !!! | ATAAGGAACAAATATTTTGG+AGG | - | chr4_2:41568257-41568276 | Msa0600410:intron | 25.0% |
| !!! | TGGTTTCTTCAAGTTTTATT+AGG | + | chr4_2:41568420-41568439 | None:intergenic | 25.0% |
| !!! | GTTTTACCATGTTTTTTGTT+TGG | - | chr4_2:41568653-41568672 | Msa0600410:intron | 25.0% |
| ! | TAACTTCCAAACAAAAAACA+TGG | + | chr4_2:41568662-41568681 | None:intergenic | 25.0% |
| !!! | TGACTTTTGATTTTACATGT+AGG | + | chr4_2:41567196-41567215 | None:intergenic | 25.0% |
| ! | CCGTTAATAATTTGAGAAAA+TGG | - | chr4_2:41567688-41567707 | Msa0600410:intron | 25.0% |
| ! | AACCACTATGATGTAATTAA+CGG | + | chr4_2:41569629-41569648 | None:intergenic | 25.0% |
| ! | TTAATTACATCATAGTGGTT+AGG | - | chr4_2:41569629-41569648 | Msa0600410:intron | 25.0% |
| ! | TAATTACATCATAGTGGTTA+GGG | - | chr4_2:41569630-41569649 | Msa0600410:intron | 25.0% |
| ! | TTAAGTATCTTGGATCTATT+AGG | - | chr4_2:41569796-41569815 | Msa0600410:intron | 25.0% |
| ! | TGTAAGGAACAAATATATTG+AGG | - | chr4_2:41569917-41569936 | Msa0600410:intron | 25.0% |
| ! | TATTGAGGAAAAAGTTAGAA+TGG | - | chr4_2:41569932-41569951 | Msa0600410:intron | 25.0% |
| !!! | AGAGAAAAGGTCTTTTTTAA+TGG | + | chr4_2:41570098-41570117 | None:intergenic | 25.0% |
| ! | ATAAAAATTCCAAAGTGTGA+AGG | + | chr4_2:41570389-41570408 | None:intergenic | 25.0% |
| ! | TAAAAAAACAAGTGTGTACA+TGG | + | chr4_2:41570426-41570445 | None:intergenic | 25.0% |
| !!! | ATGTACACACTTGTTTTTTT+AGG | - | chr4_2:41570425-41570444 | Msa0600410:intron | 25.0% |
| ! | TAAGTCCATTCTATTACTTT+CGG | + | chr4_2:41570544-41570563 | None:intergenic | 25.0% |
| ! | TAGATGATAGAATATAGATG+AGG | - | chr4_2:41570603-41570622 | Msa0600410:intron | 25.0% |
| ! | AGATGATAGAATATAGATGA+GGG | - | chr4_2:41570604-41570623 | Msa0600410:intron | 25.0% |
| ! | AACAATACTTATCTTGCTTT+AGG | - | chr4_2:41570723-41570742 | Msa0600410:intron | 25.0% |
| ! | ACAATACTTATCTTGCTTTA+GGG | - | chr4_2:41570724-41570743 | Msa0600410:intron | 25.0% |
| !!! | TAGGTCAGAGTTTTTTTTAT+TGG | - | chr4_2:41571069-41571088 | Msa0600410:intron | 25.0% |
| ! | TTAAAATTTCTGTGTACCAA+TGG | - | chr4_2:41571158-41571177 | Msa0600410:intron | 25.0% |
| ! | TTCAAACCATATAATTAACG+TGG | + | chr4_2:41571201-41571220 | None:intergenic | 25.0% |
| ! | AAACAGATTGAAAGAAAATG+TGG | + | chr4_2:41571295-41571314 | None:intergenic | 25.0% |
| ! | TATATACACTATACAGTGAA+TGG | - | chr4_2:41571654-41571673 | Msa0600410:CDS | 25.0% |
| ! | CATATTCATGCAAATTGAAT+TGG | - | chr4_2:41571748-41571767 | Msa0600410:five_prime_UTR | 25.0% |
| ! | TTAAAATTTATATTGTGGGG+TGG | + | chr4_2:41571829-41571848 | None:intergenic | 25.0% |
| ! | TTGAATTTTGTTCAGATGGA+CGG | + | chr4_2:41565066-41565085 | None:intergenic | 30.0% |
| GAGAAAGAAAAAGATAACCA+TGG | - | chr4_2:41565177-41565196 | Msa0600410:three_prime_UTR | 30.0% | |
| !! | TAACTTTAGCTTGAGATGAA+AGG | + | chr4_2:41565255-41565274 | None:intergenic | 30.0% |
| AAAAAGTCAAAAGAGTGAGT+TGG | + | chr4_2:41565297-41565316 | None:intergenic | 30.0% | |
| ATAATACTGAATTGGGTAAG+TGG | + | chr4_2:41565393-41565412 | None:intergenic | 30.0% | |
| ATCTGTGTATGTAGATAAGA+AGG | - | chr4_2:41565492-41565511 | Msa0600410:intron | 30.0% | |
| ! | TTAATCAATTGCGTCACTTT+AGG | + | chr4_2:41565785-41565804 | None:intergenic | 30.0% |
| ATTTGAACACCTGAAAATAG+TGG | + | chr4_2:41565850-41565869 | None:intergenic | 30.0% | |
| AAACACAAAATCATGGTTCA+TGG | + | chr4_2:41565884-41565903 | None:intergenic | 30.0% | |
| GTTAATGACATTCAAAATCG+TGG | - | chr4_2:41565926-41565945 | Msa0600410:intron | 30.0% | |
| AAATCGTGGTTAATTGTGTT+TGG | - | chr4_2:41565940-41565959 | Msa0600410:intron | 30.0% | |
| AGTTAATGAATATAGCAACG+TGG | + | chr4_2:41565989-41566008 | None:intergenic | 30.0% | |
| GTTAACGTAGTTTAAACATG+TGG | + | chr4_2:41566031-41566050 | None:intergenic | 30.0% | |
| AGATTTGTGACTACAATCTA+AGG | + | chr4_2:41566192-41566211 | None:intergenic | 30.0% | |
| GCAATCAACACATAAAAATC+AGG | + | chr4_2:41566226-41566245 | None:intergenic | 30.0% | |
| ! | CTATTTGTTCCTTATGCTTT+TGG | - | chr4_2:41566417-41566436 | Msa0600410:intron | 30.0% |
| TAATTGGAGTTTCCTATGTT+GGG | - | chr4_2:41566546-41566565 | Msa0600410:intron | 30.0% | |
| ACAAAATTTCCATTAGCAAC+TGG | + | chr4_2:41566620-41566639 | None:intergenic | 30.0% | |
| !! | AGAGTGTTAAGTTGATAAAG+TGG | + | chr4_2:41566690-41566709 | None:intergenic | 30.0% |
| !! | TGATATTTCTAGAATGCCTT+CGG | + | chr4_2:41566721-41566740 | None:intergenic | 30.0% |
| !! | GGAAGCTTTATTTCAAGATA+TGG | + | chr4_2:41566744-41566763 | None:intergenic | 30.0% |
| !!! | GCTTCCTTTGATATCTTTTT+TGG | - | chr4_2:41566758-41566777 | Msa0600410:intron | 30.0% |
| TTATAAACCCAAAAGGGAAA+TGG | + | chr4_2:41566901-41566920 | None:intergenic | 30.0% | |
| ! | TGTTTTACTTTGCAAGGTTA+AGG | - | chr4_2:41566931-41566950 | Msa0600410:intron | 30.0% |
| !! | AGTATTGCTATTTGAAAAGC+AGG | - | chr4_2:41567055-41567074 | Msa0600410:intron | 30.0% |
| AAAAGCAGGTGTATTGTAAA+AGG | - | chr4_2:41567069-41567088 | Msa0600410:intron | 30.0% | |
| AAATCAATTATGTGAGAGCA+AGG | + | chr4_2:41567108-41567127 | None:intergenic | 30.0% | |
| !! | ATCAAAAGTCATTTTAGCAC+TGG | - | chr4_2:41567205-41567224 | Msa0600410:intron | 30.0% |
| GACTTTATCTCTATCATCAT+CGG | + | chr4_2:41567423-41567442 | None:intergenic | 30.0% | |
| !! | AAAACTCTGAAATTTGATGG+TGG | - | chr4_2:41567551-41567570 | Msa0600410:intron | 30.0% |
| !! | TTAACTTGTTTACCTGTCTT+TGG | - | chr4_2:41567574-41567593 | Msa0600410:intron | 30.0% |
| GATATGTTGAATGTTCACTT+CGG | - | chr4_2:41567599-41567618 | Msa0600410:intron | 30.0% | |
| AACCACTATGATGTAAGTAA+GGG | + | chr4_2:41567864-41567883 | None:intergenic | 30.0% | |
| TAACCACTATGATGTAAGTA+AGG | + | chr4_2:41567865-41567884 | None:intergenic | 30.0% | |
| TTACTTACATCATAGTGGTT+AGG | - | chr4_2:41567864-41567883 | Msa0600410:intron | 30.0% | |
| TACTTACATCATAGTGGTTA+GGG | - | chr4_2:41567865-41567884 | Msa0600410:intron | 30.0% | |
| TTAAAATGATCTAAGAGAGG+TGG | + | chr4_2:41567937-41567956 | None:intergenic | 30.0% | |
| ACATGATACTACAAATTGCA+TGG | - | chr4_2:41568007-41568026 | Msa0600410:intron | 30.0% | |
| TCAAATGAATGTTCTACAGT+AGG | - | chr4_2:41568114-41568133 | Msa0600410:intron | 30.0% | |
| !! | TATTCTCTAGAGTAGAACAT+TGG | + | chr4_2:41568155-41568174 | None:intergenic | 30.0% |
| ! | TGTTCTACTCTAGAGAATAT+TGG | - | chr4_2:41568156-41568175 | Msa0600410:intron | 30.0% |
| TGGACATGCAAAAAAAGATA+AGG | - | chr4_2:41568240-41568259 | Msa0600410:intron | 30.0% | |
| TTTGGAGGAAAAAGTTAGAA+TGG | - | chr4_2:41568272-41568291 | Msa0600410:intron | 30.0% | |
| AAAAGTTAGAATGGAACCTA+TGG | - | chr4_2:41568281-41568300 | Msa0600410:intron | 30.0% | |
| TGAAAGCTTCTATTGGTATT+CGG | + | chr4_2:41568348-41568367 | None:intergenic | 30.0% | |
| ATACCAATAGAAGCTTTCAA+AGG | - | chr4_2:41568349-41568368 | Msa0600410:intron | 30.0% | |
| ! | TTTCCTTTGAAAGCTTCTAT+TGG | + | chr4_2:41568355-41568374 | None:intergenic | 30.0% |
| GTGAAGGATAATTCAAAGAA+TGG | - | chr4_2:41568384-41568403 | Msa0600410:intron | 30.0% | |
| AGGATAATTCAAAGAATGGT+AGG | - | chr4_2:41568388-41568407 | Msa0600410:intron | 30.0% | |
| GGATAATTCAAAGAATGGTA+GGG | - | chr4_2:41568389-41568408 | Msa0600410:intron | 30.0% | |
| GATAATTCAAAGAATGGTAG+GGG | - | chr4_2:41568390-41568409 | Msa0600410:intron | 30.0% | |
| GAATGGTTTCATTGAAAGTT+TGG | - | chr4_2:41568460-41568479 | Msa0600410:intron | 30.0% | |
| ! | CAGTTTTACCATTAATGAGT+TGG | - | chr4_2:41568538-41568557 | Msa0600410:intron | 30.0% |
| ATTTCGATCCAACTCATTAA+TGG | + | chr4_2:41568549-41568568 | None:intergenic | 30.0% | |
| ! | TAATGAGTTGGATCGAAATA+TGG | - | chr4_2:41568550-41568569 | Msa0600410:intron | 30.0% |
| CAAATATTTATGGGATGTTG+AGG | + | chr4_2:41568731-41568750 | None:intergenic | 30.0% | |
| AAATCAATTATGTGAGAGCA+AGG | + | chr4_2:41567108-41567127 | None:intergenic | 30.0% | |
| !! | ATCAAAAGTCATTTTAGCAC+CGG | - | chr4_2:41567205-41567224 | Msa0600410:intron | 30.0% |
| ! | CGGAAATTTTATAACTGCTA+TGG | - | chr4_2:41569050-41569069 | Msa0600410:intron | 30.0% |
| ACTCTGATACATATTGAACA+CGG | - | chr4_2:41569521-41569540 | Msa0600410:intron | 30.0% | |
| GGAAGATGTTATTGTTCAAA+AGG | + | chr4_2:41569590-41569609 | None:intergenic | 30.0% | |
| ACCACTATGATGTAATTAAC+GGG | + | chr4_2:41569628-41569647 | None:intergenic | 30.0% | |
| TGCTATGATGTATATTGAAG+AGG | - | chr4_2:41569658-41569677 | Msa0600410:intron | 30.0% | |
| TTAAAATGATGTAAGAGAGG+TGG | + | chr4_2:41569702-41569721 | None:intergenic | 30.0% | |
| TGCTTAAAATGATGTAAGAG+AGG | + | chr4_2:41569705-41569724 | None:intergenic | 30.0% | |
| ! | TCATCAGTTTTTCCTTCATT+TGG | - | chr4_2:41569745-41569764 | Msa0600410:intron | 30.0% |
| ! | CATCAGTTTTTCCTTCATTT+GGG | - | chr4_2:41569746-41569765 | Msa0600410:intron | 30.0% |
| TCAAATGAAGATTCTACTGT+AGG | - | chr4_2:41569875-41569894 | Msa0600410:intron | 30.0% | |
| ATATTTGTTCCTTACATTGG+TGG | + | chr4_2:41569913-41569932 | None:intergenic | 30.0% | |
| !!! | TGGCTTCTTCAAGTTTTATT+AGG | + | chr4_2:41570078-41570097 | None:intergenic | 30.0% |
| !! | GTTTTACCATGTTTTTTGTC+TGG | - | chr4_2:41570202-41570221 | Msa0600410:CDS | 30.0% |
| AAAGTTCCAGACAAAAAACA+TGG | + | chr4_2:41570211-41570230 | None:intergenic | 30.0% | |
| AATCATTTGTCATTACCCAT+TGG | - | chr4_2:41570273-41570292 | Msa0600410:CDS | 30.0% | |
| TTAGACCGAAAGTAATAGAA+TGG | - | chr4_2:41570536-41570555 | Msa0600410:intron | 30.0% | |
| ! | TAGAATGGACTTAAGTTACT+AGG | - | chr4_2:41570551-41570570 | Msa0600410:intron | 30.0% |
| ! | AGAATGGACTTAAGTTACTA+GGG | - | chr4_2:41570552-41570571 | Msa0600410:intron | 30.0% |
| ! | GATAAGTATTGTTGTGTTGA+AGG | + | chr4_2:41570716-41570735 | None:intergenic | 30.0% |
| ! | TCTTTTGATCTCTTGCTTTA+GGG | + | chr4_2:41570782-41570801 | None:intergenic | 30.0% |
| ! | TTCTTTTGATCTCTTGCTTT+AGG | + | chr4_2:41570783-41570802 | None:intergenic | 30.0% |
| GATCAAAAGAAGTTCAAAAC+CGG | - | chr4_2:41570792-41570811 | Msa0600410:intron | 30.0% | |
| CCAAACTTAATTCCAAAAAC+CGG | + | chr4_2:41570814-41570833 | None:intergenic | 30.0% | |
| CAGTTCATGAACCATTTAAA+TGG | - | chr4_2:41570862-41570881 | Msa0600410:intron | 30.0% | |
| TATGGTTCAGTTTAGTGATA+TGG | - | chr4_2:41570896-41570915 | Msa0600410:intron | 30.0% | |
| AACCATATAATTAACGTGGA+TGG | + | chr4_2:41571197-41571216 | None:intergenic | 30.0% | |
| !!! | ACATTACTGTTTGTTTTTGC+AGG | - | chr4_2:41571383-41571402 | Msa0600410:intron | 30.0% |
| !!! | CATTACTGTTTGTTTTTGCA+GGG | - | chr4_2:41571384-41571403 | Msa0600410:intron | 30.0% |
| !! | AATGTCATCTTTAGAGCATA+AGG | + | chr4_2:41571411-41571430 | None:intergenic | 30.0% |
| TAGTCACAATTACTCTTGAA+AGG | + | chr4_2:41571606-41571625 | None:intergenic | 30.0% | |
| TTTCAAGAGTAATTGTGACT+AGG | - | chr4_2:41571605-41571624 | Msa0600410:CDS | 30.0% | |
| TTCAAGAGTAATTGTGACTA+GGG | - | chr4_2:41571606-41571625 | Msa0600410:CDS | 30.0% | |
| TAATCCAAGTTCACAAATGA+AGG | + | chr4_2:41571708-41571727 | None:intergenic | 30.0% | |
| GAATTGGAAAATGAAATGAG+AGG | - | chr4_2:41571764-41571783 | Msa0600410:five_prime_UTR | 30.0% | |
| ATTTGTCACTCACTGTTACA+AGG | - | chr4_2:41565143-41565162 | Msa0600410:three_prime_UTR | 35.0% | |
| GAGAGAAGAAGAAAGAGATT+GGG | + | chr4_2:41565217-41565236 | None:intergenic | 35.0% | |
| !! | ATTTGACTTGCATGATTCTG+TGG | - | chr4_2:41565362-41565381 | Msa0600410:CDS | 35.0% |
| AGAAGTAGCTGAGATCTTAA+AGG | + | chr4_2:41565587-41565606 | None:intergenic | 35.0% | |
| ! | TTTAAGATCTCAGCTACTTC+TGG | - | chr4_2:41565586-41565605 | Msa0600410:intron | 35.0% |
| ! | TGTCATTAACCGCAATTTTC+CGG | + | chr4_2:41565916-41565935 | None:intergenic | 35.0% |
| TTTCTGTCTATACTTCATGC+AGG | - | chr4_2:41566497-41566516 | Msa0600410:intron | 35.0% | |
| GTAATTGGAGTTTCCTATGT+TGG | - | chr4_2:41566545-41566564 | Msa0600410:intron | 35.0% | |
| AATTGGAGTTTCCTATGTTG+GGG | - | chr4_2:41566547-41566566 | Msa0600410:intron | 35.0% | |
| ACAGATCAATGGTTTCAGAA+TGG | + | chr4_2:41566580-41566599 | None:intergenic | 35.0% | |
| TGAAACCATTGATCTGTGTA+AGG | - | chr4_2:41566583-41566602 | Msa0600410:intron | 35.0% | |
| TACTTCCTTACACAGATCAA+TGG | + | chr4_2:41566591-41566610 | None:intergenic | 35.0% | |
| ! | GTTGATAAAGTGGAACTAAC+CGG | + | chr4_2:41566680-41566699 | None:intergenic | 35.0% |
| GGTCCCAAAAAAGATATCAA+AGG | + | chr4_2:41566765-41566784 | None:intergenic | 35.0% | |
| AAGGCTGTCTTTGTCTATTA+TGG | - | chr4_2:41567250-41567269 | Msa0600410:intron | 35.0% | |
| TATGACCAATTTGTGAAGGA+TGG | - | chr4_2:41567333-41567352 | Msa0600410:intron | 35.0% | |
| ATTTCCATCATAAAACGCCA+TGG | + | chr4_2:41567364-41567383 | None:intergenic | 35.0% | |
| TCAACATATCTACCAAAGAC+AGG | + | chr4_2:41567589-41567608 | None:intergenic | 35.0% | |
| ! | ACACCTTCAATCTAAAGTGT+TGG | - | chr4_2:41567776-41567795 | Msa0600410:intron | 35.0% |
| ACCACTATGATGTAAGTAAG+GGG | + | chr4_2:41567863-41567882 | None:intergenic | 35.0% | |
| TTGTTTGTGATTCATGTCGT+CGG | - | chr4_2:41567964-41567983 | Msa0600410:intron | 35.0% | |
| TATCATGTGATCCCAAATGA+AGG | + | chr4_2:41567995-41568014 | None:intergenic | 35.0% | |
| GTATCTTGTACGTACCTATT+AGG | - | chr4_2:41568035-41568054 | Msa0600410:intron | 35.0% | |
| GTACCTATTAGGAAGTGATT+GGG | - | chr4_2:41568046-41568065 | Msa0600410:intron | 35.0% | |
| ! | GATGTCATACATTAGTCTCA+TGG | - | chr4_2:41568068-41568087 | Msa0600410:intron | 35.0% |
| ! | TACATTAGTCTCATGGTATG+TGG | - | chr4_2:41568075-41568094 | Msa0600410:intron | 35.0% |
| AATGAATGTTCTACAGTAGG+TGG | - | chr4_2:41568117-41568136 | Msa0600410:intron | 35.0% | |
| TAGTAGAGATGGCAATGTTT+AGG | - | chr4_2:41568213-41568232 | Msa0600410:intron | 35.0% | |
| GATGGCAATGTTTAGGTAAT+TGG | - | chr4_2:41568220-41568239 | Msa0600410:intron | 35.0% | |
| GGAACCTATGGATAAAGTTA+TGG | - | chr4_2:41568293-41568312 | Msa0600410:intron | 35.0% | |
| GTCTCCATAACTTTATCCAT+AGG | + | chr4_2:41568300-41568319 | None:intergenic | 35.0% | |
| AAGGAAAGTCAATCAAGTGA+AGG | - | chr4_2:41568368-41568387 | Msa0600410:intron | 35.0% | |
| !!! | GCAGCAAAGGTCATTTTTAA+TGG | + | chr4_2:41568440-41568459 | None:intergenic | 35.0% |
| TAGTTATAGAGTCCATCTAG+TGG | - | chr4_2:41568491-41568510 | Msa0600410:intron | 35.0% | |
| ! | AAAGCTTTATGCCACTAAGT+GGG | + | chr4_2:41568618-41568637 | None:intergenic | 35.0% |
| AAGGCTGTCTTTGTCTATTA+TGG | - | chr4_2:41567250-41567269 | Msa0600410:intron | 35.0% | |
| GAAATGATGGCTTGAAATAG+CGG | - | chr4_2:41569114-41569133 | Msa0600410:intron | 35.0% | |
| AAGGCAGTGAATCAATGTAA+TGG | - | chr4_2:41569199-41569218 | Msa0600410:intron | 35.0% | |
| CTCTGATACATATTGAACAC+GGG | - | chr4_2:41569522-41569541 | Msa0600410:intron | 35.0% | |
| ACCCGTTAATTACATCATAG+TGG | - | chr4_2:41569624-41569643 | Msa0600410:intron | 35.0% | |
| GATGTATATTGAAGAGGTTG+TGG | - | chr4_2:41569664-41569683 | Msa0600410:intron | 35.0% | |
| TATCATGTGATCCCAAATGA+AGG | + | chr4_2:41567995-41568014 | None:intergenic | 35.0% | |
| ACATGATACTACATGTTGCA+TGG | - | chr4_2:41569772-41569791 | Msa0600410:intron | 35.0% | |
| GTTGCATGGTTTAAGTATCT+TGG | - | chr4_2:41569786-41569805 | Msa0600410:intron | 35.0% | |
| TGGATCTATTAGGAAGTGAT+TGG | - | chr4_2:41569806-41569825 | Msa0600410:intron | 35.0% | |
| GGATCTATTAGGAAGTGATT+GGG | - | chr4_2:41569807-41569826 | Msa0600410:intron | 35.0% | |
| GATGTCATACATTGGATTCA+AGG | - | chr4_2:41569829-41569848 | Msa0600410:intron | 35.0% | |
| TACATTGGATTCAAGGAATG+TGG | - | chr4_2:41569836-41569855 | Msa0600410:intron | 35.0% | |
| AATGAAGATTCTACTGTAGG+TGG | - | chr4_2:41569878-41569897 | Msa0600410:intron | 35.0% | |
| GAAAAAGTTAGAATGGAACG+TGG | - | chr4_2:41569939-41569958 | Msa0600410:intron | 35.0% | |
| ATGGAACGTGGATAAGATTA+TGG | - | chr4_2:41569951-41569970 | Msa0600410:intron | 35.0% | |
| TGGGTAATGACAAATGATTG+AGG | + | chr4_2:41570272-41570291 | None:intergenic | 35.0% | |
| TTGTCTAACCAATTGCCAAT+GGG | + | chr4_2:41570291-41570310 | None:intergenic | 35.0% | |
| TTTGTCTAACCAATTGCCAA+TGG | + | chr4_2:41570292-41570311 | None:intergenic | 35.0% | |
| TAAGAACAATCCTTCAGTGT+AGG | - | chr4_2:41570358-41570377 | Msa0600410:intron | 35.0% | |
| GTTGAATCTTAGGCTATGTT+TGG | - | chr4_2:41570457-41570476 | Msa0600410:intron | 35.0% | |
| AATCTTAGGCTATGTTTGGA+TGG | - | chr4_2:41570461-41570480 | Msa0600410:intron | 35.0% | |
| ATAGAATATAGATGAGGGAG+TGG | - | chr4_2:41570609-41570628 | Msa0600410:intron | 35.0% | |
| ! | TTTTCTGCAAAGAAGCTAGA+AGG | - | chr4_2:41570633-41570652 | Msa0600410:intron | 35.0% |
| !! | AGAAGTTCAAAACCGGTTTT+TGG | - | chr4_2:41570799-41570818 | Msa0600410:intron | 35.0% |
| !!! | CCGGTTTTTGGAATTAAGTT+TGG | - | chr4_2:41570811-41570830 | Msa0600410:intron | 35.0% |
| ATTTCTGTGTACCAATGGTT+AGG | - | chr4_2:41571163-41571182 | Msa0600410:intron | 35.0% | |
| TTTCTGTGTACCAATGGTTA+GGG | - | chr4_2:41571164-41571183 | Msa0600410:intron | 35.0% | |
| GTCCATCCACGTTAATTATA+TGG | - | chr4_2:41571192-41571211 | Msa0600410:intron | 35.0% | |
| ! | TTTGAAGCTTGATGCATACA+AGG | - | chr4_2:41571215-41571234 | Msa0600410:intron | 35.0% |
| !! | TGCTCTAAAGATGACATTGA+AGG | - | chr4_2:41571413-41571432 | Msa0600410:intron | 35.0% |
| ATGACATTGAAGGATGACAA+GGG | - | chr4_2:41571423-41571442 | Msa0600410:intron | 35.0% | |
| TATACTCTGCATGATTGATC+TGG | - | chr4_2:41571518-41571537 | Msa0600410:intron | 35.0% | |
| TCTTCCTTCATTTGTGAACT+TGG | - | chr4_2:41571701-41571720 | Msa0600410:five_prime_UTR | 35.0% | |
| AATTTATATTGTGGGGTGGA+GGG | + | chr4_2:41571825-41571844 | None:intergenic | 35.0% | |
| AAATTTATATTGTGGGGTGG+AGG | + | chr4_2:41571826-41571845 | None:intergenic | 35.0% | |
| ! | TTACAGGTGTTTGGTTGATG+AGG | - | chr4_2:41565029-41565048 | Msa0600410:three_prime_UTR | 40.0% |
| !! | TACAGGTGTTTGGTTGATGA+GGG | - | chr4_2:41565030-41565049 | Msa0600410:three_prime_UTR | 40.0% |
| GGAGAGAAGAAGAAAGAGAT+TGG | + | chr4_2:41565218-41565237 | None:intergenic | 40.0% | |
| AGCTTGAGATGAAAGGAAGA+GGG | + | chr4_2:41565248-41565267 | None:intergenic | 40.0% | |
| TAGCTTGAGATGAAAGGAAG+AGG | + | chr4_2:41565249-41565268 | None:intergenic | 40.0% | |
| AGTAGCTGAGATCTTAAAGG+TGG | + | chr4_2:41565584-41565603 | None:intergenic | 40.0% | |
| TCGTGGTTAATTGTGTTTGG+TGG | - | chr4_2:41565943-41565962 | Msa0600410:intron | 40.0% | |
| ! | GGTTAATTGTGTTTGGTGGA+CGG | - | chr4_2:41565947-41565966 | Msa0600410:intron | 40.0% |
| ! | GTCACAATCTTTTGCTGATG+CGG | - | chr4_2:41566105-41566124 | Msa0600410:intron | 40.0% |
| ! | TCACAATCTTTTGCTGATGC+GGG | - | chr4_2:41566106-41566125 | Msa0600410:intron | 40.0% |
| ACCACAACACGATTGCAATT+AGG | + | chr4_2:41566151-41566170 | None:intergenic | 40.0% | |
| !! | TTTGCTGTTTGCAAAAGCTG+TGG | - | chr4_2:41566356-41566375 | Msa0600410:intron | 40.0% |
| CATGCAGGTAAAGCTCTTTA+TGG | - | chr4_2:41566512-41566531 | Msa0600410:intron | 40.0% | |
| TCAATGGTTTCAGAATGGAC+AGG | + | chr4_2:41566575-41566594 | None:intergenic | 40.0% | |
| ATTTCCATTAGCAACTGGAC+AGG | + | chr4_2:41566615-41566634 | None:intergenic | 40.0% | |
| TTTAAGCGTCTCAACTCAAG+GGG | + | chr4_2:41566786-41566805 | None:intergenic | 40.0% | |
| GTTTAAGCGTCTCAACTCAA+GGG | + | chr4_2:41566787-41566806 | None:intergenic | 40.0% | |
| AGTTTAAGCGTCTCAACTCA+AGG | + | chr4_2:41566788-41566807 | None:intergenic | 40.0% | |
| ! | TACTGCTCCATTTCCCTTTT+GGG | - | chr4_2:41566891-41566910 | Msa0600410:intron | 40.0% |
| TCATCAGCGTTATCAAACAG+CGG | - | chr4_2:41567273-41567292 | Msa0600410:intron | 40.0% | |
| CTGCTATGACCAATTTGTGA+AGG | - | chr4_2:41567329-41567348 | Msa0600410:intron | 40.0% | |
| CTGAATGTACTCACTTGTGT+CGG | - | chr4_2:41567716-41567735 | Msa0600410:intron | 40.0% | |
| GCACCAACACTTTAGATTGA+AGG | + | chr4_2:41567782-41567801 | None:intergenic | 40.0% | |
| CCACTATGATGTAAGTAAGG+GGG | + | chr4_2:41567862-41567881 | None:intergenic | 40.0% | |
| AACCTCTTCATGATACACCA+TGG | + | chr4_2:41567898-41567917 | None:intergenic | 40.0% | |
| !!! | TCGTCGGTTTTTCCTTCATT+TGG | - | chr4_2:41567980-41567999 | Msa0600410:intron | 40.0% |
| !!! | CGTCGGTTTTTCCTTCATTT+GGG | - | chr4_2:41567981-41568000 | Msa0600410:intron | 40.0% |
| CGTACCTATTAGGAAGTGAT+TGG | - | chr4_2:41568045-41568064 | Msa0600410:intron | 40.0% | |
| CATCCCAATCACTTCCTAAT+AGG | + | chr4_2:41568052-41568071 | None:intergenic | 40.0% | |
| !! | TCTCTAGAGTAGAACATTGG+TGG | + | chr4_2:41568152-41568171 | None:intergenic | 40.0% |
| AAAATGACCTTTGCTGCGAA+TGG | - | chr4_2:41568443-41568462 | Msa0600410:intron | 40.0% | |
| AATGAAACCATTCGCAGCAA+AGG | + | chr4_2:41568453-41568472 | None:intergenic | 40.0% | |
| AAAAGTCTTGCTCCACTAGA+TGG | + | chr4_2:41568506-41568525 | None:intergenic | 40.0% | |
| ! | AAGCTTTATGCCACTAAGTG+GGG | + | chr4_2:41568617-41568636 | None:intergenic | 40.0% |
| ! | CAAAGCTTTATGCCACTAAG+TGG | + | chr4_2:41568619-41568638 | None:intergenic | 40.0% |
| TATGGCCAATTTGTGAAGGA+TGG | - | chr4_2:41569068-41569087 | Msa0600410:intron | 40.0% | |
| ATTTCCACCATAAAACGCCA+TGG | + | chr4_2:41569099-41569118 | None:intergenic | 40.0% | |
| !! | GCGTTTTATGGTGGAAATGA+TGG | - | chr4_2:41569101-41569120 | Msa0600410:intron | 40.0% |
| !! | GGCTTGAAATAGCGGATTAA+TGG | - | chr4_2:41569122-41569141 | Msa0600410:intron | 40.0% |
| ACCGATGGTGATAGAGATAA+AGG | - | chr4_2:41569180-41569199 | Msa0600410:intron | 40.0% | |
| GCCTTTATCTCTATCACCAT+CGG | + | chr4_2:41569184-41569203 | None:intergenic | 40.0% | |
| !! | TTAGCTTGTGTACCTGTCTT+TGG | - | chr4_2:41569339-41569358 | Msa0600410:intron | 40.0% |
| ACTCTTTGACTATGAAGCAC+TGG | - | chr4_2:41569417-41569436 | Msa0600410:intron | 40.0% | |
| ! | TGATGTAATTAACGGGTGCA+AGG | + | chr4_2:41569621-41569640 | None:intergenic | 40.0% |
| GTGATTGGGATGTCATACAT+TGG | - | chr4_2:41568060-41568079 | Msa0600410:intron | 40.0% | |
| ATGACAAGACCACCAATGTA+AGG | - | chr4_2:41569901-41569920 | Msa0600410:intron | 40.0% | |
| TCCAAAGAAAGTCAGTCAAC+TGG | - | chr4_2:41570023-41570042 | Msa0600410:intron | 40.0% | |
| CCAAAGAAAGTCAGTCAACT+GGG | - | chr4_2:41570024-41570043 | Msa0600410:intron | 40.0% | |
| ! | CTTATTTAGAGTCCGTCTAG+TGG | - | chr4_2:41570154-41570173 | Msa0600410:intron | 40.0% |
| GAAAGTCTTACTCCACTAGA+CGG | + | chr4_2:41570169-41570188 | None:intergenic | 40.0% | |
| GTCTAGTGGAGTAAGACTTT+CGG | - | chr4_2:41570168-41570187 | Msa0600410:intron | 40.0% | |
| TGTCATTACCCATTGGCAAT+TGG | - | chr4_2:41570280-41570299 | Msa0600410:CDS | 40.0% | |
| TAGGCTATACCTTCACACTT+TGG | - | chr4_2:41570377-41570396 | Msa0600410:intron | 40.0% | |
| GAGTCAAGCTGTTGAATCTT+AGG | - | chr4_2:41570447-41570466 | Msa0600410:intron | 40.0% | |
| ! | TATGTTTGGATGGAGGCTTT+TGG | - | chr4_2:41570471-41570490 | Msa0600410:intron | 40.0% |
| TTCGGTCTAACAAGATGACT+AGG | + | chr4_2:41570526-41570545 | None:intergenic | 40.0% | |
| CTTAAGTTACTAGGGTTGAC+AGG | - | chr4_2:41570560-41570579 | Msa0600410:intron | 40.0% | |
| TGTAAGCTTAGAGAAAGTCC+TGG | - | chr4_2:41570673-41570692 | Msa0600410:intron | 40.0% | |
| TGAAGGTCAAAACATGTTCC+AGG | + | chr4_2:41570699-41570718 | None:intergenic | 40.0% | |
| !! | TTATCTTGCTTTAGGGACTG+TGG | - | chr4_2:41570731-41570750 | Msa0600410:intron | 40.0% |
| AAAACTTCAACCCGCAGTTA+GGG | + | chr4_2:41570947-41570966 | None:intergenic | 40.0% | |
| GAGTGTACATACTAGAGTTG+TGG | - | chr4_2:41570980-41570999 | Msa0600410:intron | 40.0% | |
| AAACTCTGACCTAAAGTGCA+GGG | + | chr4_2:41571062-41571081 | None:intergenic | 40.0% | |
| AAAACTCTGACCTAAAGTGC+AGG | + | chr4_2:41571063-41571082 | None:intergenic | 40.0% | |
| TAACTTAGACACACGATCAG+TGG | - | chr4_2:41571096-41571115 | Msa0600410:intron | 40.0% | |
| GATGACATTGAAGGATGACA+AGG | - | chr4_2:41571422-41571441 | Msa0600410:intron | 40.0% | |
| CAGTGAATGGTGAACTCATA+AGG | - | chr4_2:41571667-41571686 | Msa0600410:exon | 40.0% | |
| CACTCACTGTTACAAGGACA+AGG | - | chr4_2:41565149-41565168 | Msa0600410:three_prime_UTR | 45.0% | |
| CACTGTTACAAGGACAAGGA+AGG | - | chr4_2:41565153-41565172 | Msa0600410:three_prime_UTR | 45.0% | |
| GGGAAGAGAATGAAACTCCA+TGG | + | chr4_2:41565197-41565216 | None:intergenic | 45.0% | |
| TTGAGATGAAAGGAAGAGGG+TGG | + | chr4_2:41565245-41565264 | None:intergenic | 45.0% | |
| TCAATTCCAGTCACCTTCAC+AGG | + | chr4_2:41565526-41565545 | None:intergenic | 45.0% | |
| TTACCAAACCCTGTTGTCAG+TGG | - | chr4_2:41565550-41565569 | Msa0600410:intron | 45.0% | |
| TGAGATCTTAAAGGTGGCAG+GGG | + | chr4_2:41565578-41565597 | None:intergenic | 45.0% | |
| CTGAGATCTTAAAGGTGGCA+GGG | + | chr4_2:41565579-41565598 | None:intergenic | 45.0% | |
| AATCGCTTGTGTTCAGTTGC+TGG | + | chr4_2:41565811-41565830 | None:intergenic | 45.0% | |
| TTTGCTGATGCGGGAAATTG+CGG | - | chr4_2:41566115-41566134 | Msa0600410:intron | 45.0% | |
| CGGGAAATTGCGGTCAAATT+CGG | - | chr4_2:41566125-41566144 | Msa0600410:intron | 45.0% | |
| GCCTAATTGCAATCGTGTTG+TGG | - | chr4_2:41566147-41566166 | Msa0600410:intron | 45.0% | |
| ! | AGTGGCGTGTTAGTTTGATG+AGG | + | chr4_2:41566449-41566468 | None:intergenic | 45.0% |
| GCAGGTAAAGCTCTTTATGG+CGG | - | chr4_2:41566515-41566534 | Msa0600410:intron | 45.0% | |
| ! | TATGGCGGAGATGTGGTAAT+TGG | - | chr4_2:41566530-41566549 | Msa0600410:intron | 45.0% |
| GTATCCTGTCCAGTTGCTAA+TGG | - | chr4_2:41566608-41566627 | Msa0600410:intron | 45.0% | |
| GAGTAATTGCAGGTAGTGTC+TGG | + | chr4_2:41566655-41566674 | None:intergenic | 45.0% | |
| ACTACCTGCAATTACTCCAC+CGG | - | chr4_2:41566658-41566677 | Msa0600410:intron | 45.0% | |
| GATAAAGTGGAACTAACCGG+TGG | + | chr4_2:41566677-41566696 | None:intergenic | 45.0% | |
| AACACTCTTAACAACGCCGA+AGG | - | chr4_2:41566702-41566721 | Msa0600410:intron | 45.0% | |
| TTCCATTTGTGAATTGCCCC+TGG | - | chr4_2:41566866-41566885 | Msa0600410:intron | 45.0% | |
| CAAAAGGGAAATGGAGCAGT+AGG | + | chr4_2:41566892-41566911 | None:intergenic | 45.0% | |
| ! | CTACTGCTCCATTTCCCTTT+TGG | - | chr4_2:41566890-41566909 | Msa0600410:intron | 45.0% |
| CACTGCCATCCTTCACAAAT+TGG | + | chr4_2:41567341-41567360 | None:intergenic | 45.0% | |
| ! | AGTGCCATGGCGTTTTATGA+TGG | - | chr4_2:41567357-41567376 | Msa0600410:intron | 45.0% |
| TGATGGAAATGACGCTGTCA+TGG | - | chr4_2:41567374-41567393 | Msa0600410:intron | 45.0% | |
| !! | CACTTGTGTCGGTGTTGTAT+TGG | - | chr4_2:41567727-41567746 | Msa0600410:intron | 45.0% |
| ATCCAGTGTTCGACACGTAT+GGG | + | chr4_2:41567756-41567775 | None:intergenic | 45.0% | |
| TATCCAGTGTTCGACACGTA+TGG | + | chr4_2:41567757-41567776 | None:intergenic | 45.0% | |
| CCCCCTTACTTACATCATAG+TGG | - | chr4_2:41567859-41567878 | Msa0600410:intron | 45.0% | |
| ACATCATAGTGGTTAGGGTG+CGG | - | chr4_2:41567870-41567889 | Msa0600410:intron | 45.0% | |
| TGCCATGGTGTATCATGAAG+AGG | - | chr4_2:41567893-41567912 | Msa0600410:intron | 45.0% | |
| GGTGTATCATGAAGAGGTTG+TGG | - | chr4_2:41567899-41567918 | Msa0600410:intron | 45.0% | |
| TTTATGCCACTAAGTGGGGT+CGG | + | chr4_2:41568613-41568632 | None:intergenic | 45.0% | |
| ! | AGAGCAAGGTAAGTTGAGCA+AGG | + | chr4_2:41568829-41568848 | None:intergenic | 45.0% |
| ACACACATTTGCACGTTCAC+CGG | + | chr4_2:41568962-41568981 | None:intergenic | 45.0% | |
| ACGTGCAAATGTGTGTCAGA+AGG | - | chr4_2:41568966-41568985 | Msa0600410:intron | 45.0% | |
| CTGCTATGGCCAATTTGTGA+AGG | - | chr4_2:41569064-41569083 | Msa0600410:intron | 45.0% | |
| CACTGCCATCCTTCACAAAT+TGG | + | chr4_2:41567341-41567360 | None:intergenic | 45.0% | |
| !! | ACCATCGGTGTTATCGATTG+CGG | + | chr4_2:41569169-41569188 | None:intergenic | 45.0% |
| CTTGTGTACCTGTCTTTGGT+AGG | - | chr4_2:41569343-41569362 | Msa0600410:intron | 45.0% | |
| CCAACATACCTACCAAAGAC+AGG | + | chr4_2:41569354-41569373 | None:intergenic | 45.0% | |
| CCTGTCTTTGGTAGGTATGT+TGG | - | chr4_2:41569351-41569370 | Msa0600410:intron | 45.0% | |
| AATGTACACCCCACATGTGT+CGG | - | chr4_2:41569487-41569506 | Msa0600410:intron | 45.0% | |
| GACAAGCCTGCAATAAGTGT+TGG | - | chr4_2:41569544-41569563 | Msa0600410:intron | 45.0% | |
| GTAGCACCAACACTTATTGC+AGG | + | chr4_2:41569553-41569572 | None:intergenic | 45.0% | |
| ! | TGTAATTAACGGGTGCAAGG+TGG | + | chr4_2:41569618-41569637 | None:intergenic | 45.0% |
| ! | CCCAGTTGACTGACTTTCTT+TGG | + | chr4_2:41570027-41570046 | None:intergenic | 45.0% |
| ! | GAAGGTATAGCCTACACTGA+AGG | + | chr4_2:41570371-41570390 | None:intergenic | 45.0% |
| CTTAGGCTATGTTTGGATGG+AGG | - | chr4_2:41570464-41570483 | Msa0600410:intron | 45.0% | |
| ! | TTTGGATGGAGGCTTTTGGA+GGG | - | chr4_2:41570475-41570494 | Msa0600410:intron | 45.0% |
| TGACAGGCGCATTTGTGAAT+TGG | - | chr4_2:41570576-41570595 | Msa0600410:intron | 45.0% | |
| TCTGCAAAGAAGCTAGAAGG+AGG | - | chr4_2:41570636-41570655 | Msa0600410:intron | 45.0% | |
| CAAAGAAGCTAGAAGGAGGT+TGG | - | chr4_2:41570640-41570659 | Msa0600410:intron | 45.0% | |
| !! | ATCTCTTGCTTTAGGGACTG+CGG | + | chr4_2:41570775-41570794 | None:intergenic | 45.0% |
| ! | GTTAGGGGTGTGCAAAAATG+TGG | + | chr4_2:41570931-41570950 | None:intergenic | 45.0% |
| ! | TTTTTGCACACCCCTAACTG+CGG | - | chr4_2:41570933-41570952 | Msa0600410:intron | 45.0% |
| AAACTTCAACCCGCAGTTAG+GGG | + | chr4_2:41570946-41570965 | None:intergenic | 45.0% | |
| GAAAACTTCAACCCGCAGTT+AGG | + | chr4_2:41570948-41570967 | None:intergenic | 45.0% | |
| GTGAACCTCCAAGGATCAAA+GGG | - | chr4_2:41571022-41571041 | Msa0600410:intron | 45.0% | |
| ACACGATCAGTGGTCATTGT+TGG | - | chr4_2:41571106-41571125 | Msa0600410:intron | 45.0% | |
| CACGATCAGTGGTCATTGTT+GGG | - | chr4_2:41571107-41571126 | Msa0600410:intron | 45.0% | |
| TGGACATTCTCCCTAACCAT+TGG | + | chr4_2:41571177-41571196 | None:intergenic | 45.0% | |
| ACTCTGCATGATTGATCTGG+AGG | - | chr4_2:41571521-41571540 | Msa0600410:intron | 45.0% | |
| CTCTGCATGATTGATCTGGA+GGG | - | chr4_2:41571522-41571541 | Msa0600410:intron | 45.0% | |
| !! | TTATTATTATAATAATTTAC+AGG | - | chr4_2:41565013-41565032 | Msa0600410:three_prime_UTR | 5.0% |
| !! | AATTTATTATATTTGTATAA+AGG | + | chr4_2:41567132-41567151 | None:intergenic | 5.0% |
| !! | AATTTATTATATTTGTATAA+AGG | + | chr4_2:41567132-41567151 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTAAAGTT+TGG | - | chr4_2:41570125-41570144 | Msa0600410:intron | 5.0% |
| !! | TTTATTAAAATTTATATTGT+GGG | + | chr4_2:41571833-41571852 | None:intergenic | 5.0% |
| !!! | TTTTATTAAAATTTATATTG+TGG | + | chr4_2:41571834-41571853 | None:intergenic | 5.0% |
| !! | GTTTGGTTGATGAGGGTGCA+CGG | - | chr4_2:41565037-41565056 | Msa0600410:three_prime_UTR | 50.0% |
| TGAAAGGAAGAGGGTGGAGA+AGG | + | chr4_2:41565239-41565258 | None:intergenic | 50.0% | |
| GAAGGCTGACTATCCTGTGA+AGG | - | chr4_2:41565510-41565529 | Msa0600410:intron | 50.0% | |
| GACTATCCTGTGAAGGTGAC+TGG | - | chr4_2:41565517-41565536 | Msa0600410:intron | 50.0% | |
| GCTGAGATCTTAAAGGTGGC+AGG | + | chr4_2:41565580-41565599 | None:intergenic | 50.0% | |
| GCTGTTTGCAAAAGCTGTGG+AGG | - | chr4_2:41566359-41566378 | Msa0600410:intron | 50.0% | |
| ! | AGGCAGCTCCCAAAAGCATA+AGG | + | chr4_2:41566429-41566448 | None:intergenic | 50.0% |
| ! | AGCTCTTTATGGCGGAGATG+TGG | - | chr4_2:41566523-41566542 | Msa0600410:intron | 50.0% |
| CTAACCGGTGGAGTAATTGC+AGG | + | chr4_2:41566665-41566684 | None:intergenic | 50.0% | |
| TCTGCTGCTGCAATCTGTCA+TGG | + | chr4_2:41567299-41567318 | None:intergenic | 50.0% | |
| !! | TCGGTGTTATCGATTGCGAG+TGG | + | chr4_2:41567404-41567423 | None:intergenic | 50.0% |
| ! | GATGTAAGTAAGGGGGTGCA+AGG | + | chr4_2:41567855-41567874 | None:intergenic | 50.0% |
| GCCATGACAGATTGCAGTAG+CGG | - | chr4_2:41569030-41569049 | Msa0600410:intron | 50.0% | |
| TCCGCTACTGCAATCTGTCA+TGG | + | chr4_2:41569034-41569053 | None:intergenic | 50.0% | |
| ! | AGTGCCATGGCGTTTTATGG+TGG | - | chr4_2:41569092-41569111 | Msa0600410:intron | 50.0% |
| !! | CCATCGGTGTTATCGATTGC+GGG | + | chr4_2:41569168-41569187 | None:intergenic | 50.0% |
| ! | GTTTGGATGGAGGCTTTTGG+AGG | - | chr4_2:41570474-41570493 | Msa0600410:intron | 50.0% |
| !! | TTGGATGGAGGCTTTTGGAG+GGG | - | chr4_2:41570476-41570495 | Msa0600410:intron | 50.0% |
| CAGGCGCATTTGTGAATTGG+TGG | - | chr4_2:41570579-41570598 | Msa0600410:intron | 50.0% | |
| AGCTAGAAGGAGGTTGGAGA+TGG | - | chr4_2:41570646-41570665 | Msa0600410:intron | 50.0% | |
| GTCAAAACATGTTCCAGGCC+AGG | + | chr4_2:41570694-41570713 | None:intergenic | 50.0% | |
| !! | TCTCTTGCTTTAGGGACTGC+GGG | + | chr4_2:41570774-41570793 | None:intergenic | 50.0% |
| ! | TTTTGCACACCCCTAACTGC+GGG | - | chr4_2:41570934-41570953 | Msa0600410:intron | 50.0% |
| ! | GAGGTTCACGCAAAGCATCA+AGG | + | chr4_2:41571011-41571030 | None:intergenic | 50.0% |
| ATGCTTTGCGTGAACCTCCA+AGG | - | chr4_2:41571013-41571032 | Msa0600410:intron | 50.0% | |
| CGTGAACCTCCAAGGATCAA+AGG | - | chr4_2:41571021-41571040 | Msa0600410:intron | 50.0% | |
| TCTGCACACCCTTTGATCCT+TGG | + | chr4_2:41571033-41571052 | None:intergenic | 50.0% | |
| AGAGTAGTGCCCTGCACTTT+AGG | - | chr4_2:41571050-41571069 | Msa0600410:intron | 50.0% | |
| GCACCACTGACAACAGGGTT+TGG | + | chr4_2:41565556-41565575 | None:intergenic | 55.0% | |
| CGCTTGTGTTCAGTTGCTGG+TGG | + | chr4_2:41565808-41565827 | None:intergenic | 55.0% | |
| ATGGACAGGCACCCCAACAT+AGG | + | chr4_2:41566561-41566580 | None:intergenic | 55.0% | |
| GGCCAGGGGCAATTCACAAA+TGG | + | chr4_2:41566871-41566890 | None:intergenic | 55.0% | |
| GAAATGGAGCAGTAGGCCAG+GGG | + | chr4_2:41566885-41566904 | None:intergenic | 55.0% | |
| GGAAATGGAGCAGTAGGCCA+GGG | + | chr4_2:41566886-41566905 | None:intergenic | 55.0% | |
| TGTGAAGGATGGCAGTGCCA+TGG | - | chr4_2:41567344-41567363 | Msa0600410:intron | 55.0% | |
| CACCCATACGTGTCGAACAC+TGG | - | chr4_2:41567751-41567770 | Msa0600410:intron | 55.0% | |
| ! | GTAAGTAAGGGGGTGCAAGG+TGG | + | chr4_2:41567852-41567871 | None:intergenic | 55.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr4_2:41568605-41568624 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr4_2:41568604-41568623 | Msa0600410:intron | 55.0% | |
| TGTGAAGGATGGCAGTGCCA+TGG | - | chr4_2:41567344-41567363 | Msa0600410:intron | 55.0% | |
| ! | GGCAGTGCCATGGCGTTTTA+TGG | - | chr4_2:41567354-41567373 | Msa0600410:intron | 55.0% |
| TGCGGGTAGCAGATCATGAC+AGG | + | chr4_2:41569151-41569170 | None:intergenic | 55.0% | |
| CCCGCAATCGATAACACCGA+TGG | - | chr4_2:41569165-41569184 | Msa0600410:intron | 55.0% | |
| !! | ACACAGCACCGACACATGTG+GGG | + | chr4_2:41569498-41569517 | None:intergenic | 55.0% |
| !! | GACACAGCACCGACACATGT+GGG | + | chr4_2:41569499-41569518 | None:intergenic | 55.0% |
| !! | CACATGTGTCGGTGCTGTGT+CGG | - | chr4_2:41569498-41569517 | Msa0600410:intron | 55.0% |
| ! | TAACGGGTGCAAGGTGGAGT+GGG | + | chr4_2:41569612-41569631 | None:intergenic | 55.0% |
| ! | TTAACGGGTGCAAGGTGGAG+TGG | + | chr4_2:41569613-41569632 | None:intergenic | 55.0% |
| GCTTAGAGAAAGTCCTGGCC+TGG | - | chr4_2:41570678-41570697 | Msa0600410:intron | 55.0% | |
| !! | TGCTTTAGGGACTGCGGGTA+GGG | + | chr4_2:41570769-41570788 | None:intergenic | 55.0% |
| !! | TTGCTTTAGGGACTGCGGGT+AGG | + | chr4_2:41570770-41570789 | None:intergenic | 55.0% |
| GCACACCCTTTGATCCTTGG+AGG | + | chr4_2:41571030-41571049 | None:intergenic | 55.0% | |
| !! | CAGGGGCACCACTGACAACA+GGG | + | chr4_2:41565561-41565580 | None:intergenic | 60.0% |
| GGGAAATGGAGCAGTAGGCC+AGG | + | chr4_2:41566887-41566906 | None:intergenic | 60.0% | |
| !! | AGCACTGGTGAGCGTGCACA+TGG | - | chr4_2:41567220-41567239 | Msa0600410:intron | 60.0% |
| ! | GCACTGGTGAGCGTGCACAT+GGG | - | chr4_2:41567221-41567240 | Msa0600410:intron | 60.0% |
| GCGTGCACATGGGTGTCAGA+AGG | - | chr4_2:41567231-41567250 | Msa0600410:intron | 60.0% | |
| ! | AAGGGGGTGCAAGGTGGAGT+GGG | + | chr4_2:41567846-41567865 | None:intergenic | 60.0% |
| ! | TAAGGGGGTGCAAGGTGGAG+TGG | + | chr4_2:41567847-41567866 | None:intergenic | 60.0% |
| !! | CGACACAGCACCGACACATG+TGG | + | chr4_2:41569500-41569519 | None:intergenic | 60.0% |
| AACGGGTGCAAGGTGGAGTG+GGG | + | chr4_2:41569611-41569630 | None:intergenic | 60.0% | |
| !! | TGGAGGCTTTTGGAGGGGAG+AGG | - | chr4_2:41570481-41570500 | Msa0600410:intron | 60.0% |
| ACTGCGGGTAGGGGAGTTCA+TGG | + | chr4_2:41570759-41570778 | None:intergenic | 60.0% | |
| !! | GCTTTAGGGACTGCGGGTAG+GGG | + | chr4_2:41570768-41570787 | None:intergenic | 60.0% |
| !! | GCAGGGGCACCACTGACAAC+AGG | + | chr4_2:41565562-41565581 | None:intergenic | 65.0% |
| ! | AGGGGGTGCAAGGTGGAGTG+GGG | + | chr4_2:41567845-41567864 | None:intergenic | 65.0% |
| ! | GTGGTTAGGGTGCGGTGCCA+TGG | - | chr4_2:41567878-41567897 | Msa0600410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 41565013 | 41571856 | 41565013 | ID=Msa0600410;Name=Msa0600410 |
| chr4_2 | mRNA | 41565013 | 41571856 | 41565013 | ID=Msa0600410-mRNA-1;Parent=Msa0600410;Name=Msa0600410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=183|1|1|1|0.75|0.6|5|302|154 |
| chr4_2 | exon | 41565013 | 41565208 | 41565013 | ID=Msa0600410-mRNA-1:exon:9065;Parent=Msa0600410-mRNA-1 |
| chr4_2 | exon | 41565251 | 41565464 | 41565251 | ID=Msa0600410-mRNA-1:exon:9064;Parent=Msa0600410-mRNA-1 |
| chr4_2 | exon | 41570190 | 41570350 | 41570190 | ID=Msa0600410-mRNA-1:exon:9063;Parent=Msa0600410-mRNA-1 |
| chr4_2 | exon | 41571262 | 41571363 | 41571262 | ID=Msa0600410-mRNA-1:exon:9062;Parent=Msa0600410-mRNA-1 |
| chr4_2 | exon | 41571580 | 41571856 | 41571580 | ID=Msa0600410-mRNA-1:exon:9061;Parent=Msa0600410-mRNA-1 |
| chr4_2 | five_prime_UTR | 41571674 | 41571856 | 41571674 | ID=Msa0600410-mRNA-1:five_prime_utr;Parent=Msa0600410-mRNA-1 |
| chr4_2 | CDS | 41571580 | 41571673 | 41571580 | ID=Msa0600410-mRNA-1:cds;Parent=Msa0600410-mRNA-1 |
| chr4_2 | CDS | 41571262 | 41571363 | 41571262 | ID=Msa0600410-mRNA-1:cds;Parent=Msa0600410-mRNA-1 |
| chr4_2 | CDS | 41570190 | 41570350 | 41570190 | ID=Msa0600410-mRNA-1:cds;Parent=Msa0600410-mRNA-1 |
| chr4_2 | CDS | 41565357 | 41565464 | 41565357 | ID=Msa0600410-mRNA-1:cds;Parent=Msa0600410-mRNA-1 |
| chr4_2 | three_prime_UTR | 41565251 | 41565356 | 41565251 | ID=Msa0600410-mRNA-1:three_prime_utr;Parent=Msa0600410-mRNA-1 |
| chr4_2 | three_prime_UTR | 41565013 | 41565208 | 41565013 | ID=Msa0600410-mRNA-1:three_prime_utr;Parent=Msa0600410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
