Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447110 | sp|Q9SR72|GL32_ARATH | 60.194 | 206 | 70 | 3 | 13 | 209 | 19 | 221 | 1.54e-85 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447110 | A0A072VRM6 | 98.095 | 210 | 4 | 0 | 1 | 210 | 1 | 210 | 1.49e-147 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1447110 | -0.817153 | 3.821611e-52 | -8.615850e-47 |
| Msa0032610 | Msa1447110 | 0.828741 | 7.597517e-55 | -8.615850e-47 |
| Msa0069260 | Msa1447110 | 0.824474 | 7.914540e-54 | -8.615850e-47 |
| Msa0069280 | Msa1447110 | 0.811603 | 6.446656e-51 | -8.615850e-47 |
| Msa0069310 | Msa1447110 | 0.834670 | 2.621328e-56 | -8.615850e-47 |
| Msa0074950 | Msa1447110 | -0.806401 | 8.376604e-50 | -8.615850e-47 |
| Msa0097850 | Msa1447110 | 0.801057 | 1.077411e-48 | -8.615850e-47 |
| Msa0099510 | Msa1447110 | 0.813018 | 3.164985e-51 | -8.615850e-47 |
| Msa0118000 | Msa1447110 | 0.803482 | 3.414336e-49 | -8.615850e-47 |
| Msa1350310 | Msa1447110 | 0.805018 | 1.634529e-49 | -8.615850e-47 |
| Msa1360890 | Msa1447110 | -0.819206 | 1.311618e-52 | -8.615850e-47 |
| Msa1369530 | Msa1447110 | 0.806842 | 6.759889e-50 | -8.615850e-47 |
| Msa1370620 | Msa1447110 | 0.801068 | 1.071960e-48 | -8.615850e-47 |
| Msa1390120 | Msa1447110 | 0.827723 | 1.336612e-54 | -8.615850e-47 |
| Msa1390230 | Msa1447110 | 0.810072 | 1.382716e-50 | -8.615850e-47 |
| Msa1395530 | Msa1447110 | 0.828546 | 8.467455e-55 | -8.615850e-47 |
| Msa1400610 | Msa1447110 | -0.809416 | 1.913017e-50 | -8.615850e-47 |
| Msa1403930 | Msa1447110 | -0.806237 | 9.067616e-50 | -8.615850e-47 |
| Msa1404540 | Msa1447110 | 0.806360 | 8.543004e-50 | -8.615850e-47 |
| Msa1417810 | Msa1447110 | -0.806521 | 7.901238e-50 | -8.615850e-47 |
| Msa1417830 | Msa1447110 | -0.802601 | 5.191231e-49 | -8.615850e-47 |
| Msa1429360 | Msa1447110 | -0.814998 | 1.157843e-51 | -8.615850e-47 |
| Msa1431060 | Msa1447110 | 0.814817 | 1.270018e-51 | -8.615850e-47 |
| Msa1439960 | Msa1447110 | 0.804536 | 2.060400e-49 | -8.615850e-47 |
| Msa1442220 | Msa1447110 | -0.825723 | 4.012576e-54 | -8.615850e-47 |
| Msa1445400 | Msa1447110 | -0.805898 | 1.068827e-49 | -8.615850e-47 |
| Msa1445420 | Msa1447110 | -0.803496 | 3.391566e-49 | -8.615850e-47 |
| Msa1447110 | Msa1449350 | -0.800979 | 1.117628e-48 | -8.615850e-47 |
| Msa1447110 | Msa1449910 | 0.910928 | 1.080633e-82 | -8.615850e-47 |
| Msa0613460 | Msa1447110 | 0.838366 | 3.001141e-57 | -8.615850e-47 |
| Msa0626680 | Msa1447110 | 0.816458 | 5.473050e-52 | -8.615850e-47 |
| Msa0633760 | Msa1447110 | 0.818130 | 2.301293e-52 | -8.615850e-47 |
| Msa0648520 | Msa1447110 | 0.827349 | 1.643302e-54 | -8.615850e-47 |
| Msa0654010 | Msa1447110 | 0.822127 | 2.797789e-53 | -8.615850e-47 |
| Msa0664760 | Msa1447110 | 0.829569 | 4.783474e-55 | -8.615850e-47 |
| Msa0669850 | Msa1447110 | 0.805042 | 1.615871e-49 | -8.615850e-47 |
| Msa0691050 | Msa1447110 | 0.840053 | 1.095943e-57 | -8.615850e-47 |
| Msa0718070 | Msa1447110 | 0.806487 | 8.033537e-50 | -8.615850e-47 |
| Msa0743680 | Msa1447110 | 0.838611 | 2.595397e-57 | -8.615850e-47 |
| Msa0754720 | Msa1447110 | -0.812960 | 3.258347e-51 | -8.615850e-47 |
| Msa0784380 | Msa1447110 | 0.809329 | 1.997331e-50 | -8.615850e-47 |
| Msa0784620 | Msa1447110 | 0.820962 | 5.199222e-53 | -8.615850e-47 |
| Msa0791820 | Msa1447110 | 0.822094 | 2.847526e-53 | -8.615850e-47 |
| Msa0809740 | Msa1447110 | 0.803852 | 2.860465e-49 | -8.615850e-47 |
| Msa0125370 | Msa1447110 | -0.860653 | 1.777511e-63 | -8.615850e-47 |
| Msa0138970 | Msa1447110 | -0.805199 | 1.498151e-49 | -8.615850e-47 |
| Msa0140510 | Msa1447110 | -0.800378 | 1.482530e-48 | -8.615850e-47 |
| Msa0140520 | Msa1447110 | -0.812849 | 3.446788e-51 | -8.615850e-47 |
| Msa0148120 | Msa1447110 | 0.834079 | 3.688330e-56 | -8.615850e-47 |
| Msa0156650 | Msa1447110 | -0.835898 | 1.283172e-56 | -8.615850e-47 |
| Msa0162770 | Msa1447110 | -0.809454 | 1.877436e-50 | -8.615850e-47 |
| Msa0172350 | Msa1447110 | 0.806916 | 6.519886e-50 | -8.615850e-47 |
| Msa0172780 | Msa1447110 | 0.823035 | 1.720414e-53 | -8.615850e-47 |
| Msa0196020 | Msa1447110 | -0.841456 | 4.699283e-58 | -8.615850e-47 |
| Msa0196340 | Msa1447110 | 0.816351 | 5.782546e-52 | -8.615850e-47 |
| Msa0208810 | Msa1447110 | 0.827944 | 1.182454e-54 | -8.615850e-47 |
| Msa0222920 | Msa1447110 | 0.814366 | 1.598078e-51 | -8.615850e-47 |
| Msa0223380 | Msa1447110 | 0.809111 | 2.224097e-50 | -8.615850e-47 |
| Msa0238230 | Msa1447110 | 0.838702 | 2.457326e-57 | -8.615850e-47 |
| Msa1236070 | Msa1447110 | -0.843737 | 1.165622e-58 | -8.615850e-47 |
| Msa1244750 | Msa1447110 | -0.812802 | 3.529197e-51 | -8.615850e-47 |
| Msa1245940 | Msa1447110 | -0.800057 | 1.722620e-48 | -8.615850e-47 |
| Msa1259070 | Msa1447110 | -0.801439 | 8.999949e-49 | -8.615850e-47 |
| Msa1269580 | Msa1447110 | -0.821749 | 3.421713e-53 | -8.615850e-47 |
| Msa1311960 | Msa1447110 | 0.805457 | 1.322886e-49 | -8.615850e-47 |
| Msa0374250 | Msa1447110 | 0.817275 | 3.588220e-52 | -8.615850e-47 |
| Msa0377530 | Msa1447110 | 0.843619 | 1.253315e-58 | -8.615850e-47 |
| Msa0388030 | Msa1447110 | -0.805500 | 1.295388e-49 | -8.615850e-47 |
| Msa0414950 | Msa1447110 | -0.816338 | 5.822955e-52 | -8.615850e-47 |
| Msa0420590 | Msa1447110 | -0.806269 | 8.929438e-50 | -8.615850e-47 |
| Msa0426810 | Msa1447110 | 0.811000 | 8.712605e-51 | -8.615850e-47 |
| Msa0428240 | Msa1447110 | 0.804065 | 2.582976e-49 | -8.615850e-47 |
| Msa0429290 | Msa1447110 | 0.800722 | 1.261216e-48 | -8.615850e-47 |
| Msa0436280 | Msa1447110 | -0.818636 | 1.767373e-52 | -8.615850e-47 |
| Msa0437510 | Msa1447110 | 0.904038 | 1.862048e-79 | -8.615850e-47 |
| Msa0462220 | Msa1447110 | 0.826902 | 2.102256e-54 | -8.615850e-47 |
| Msa0467900 | Msa1447110 | -0.814006 | 1.918711e-51 | -8.615850e-47 |
| Msa0469790 | Msa1447110 | 0.808230 | 3.429963e-50 | -8.615850e-47 |
| Msa0469820 | Msa1447110 | 0.808070 | 3.709816e-50 | -8.615850e-47 |
| Msa0473240 | Msa1447110 | 0.822170 | 2.733507e-53 | -8.615850e-47 |
| Msa0474490 | Msa1447110 | 0.814294 | 1.657816e-51 | -8.615850e-47 |
| Msa0474590 | Msa1447110 | 0.806458 | 8.147983e-50 | -8.615850e-47 |
| Msa0475580 | Msa1447110 | 0.803445 | 3.474561e-49 | -8.615850e-47 |
| Msa1004900 | Msa1447110 | -0.800970 | 1.122299e-48 | -8.615850e-47 |
| Msa1037650 | Msa1447110 | -0.800259 | 1.567605e-48 | -8.615850e-47 |
| Msa1040120 | Msa1447110 | 0.813694 | 2.248718e-51 | -8.615850e-47 |
| Msa1069660 | Msa1447110 | -0.818287 | 2.121008e-52 | -8.615850e-47 |
| Msa1077670 | Msa1447110 | 0.829790 | 4.225409e-55 | -8.615850e-47 |
| Msa1079370 | Msa1447110 | -0.804015 | 2.646073e-49 | -8.615850e-47 |
| Msa0249560 | Msa1447110 | 0.801931 | 7.134514e-49 | -8.615850e-47 |
| Msa0268090 | Msa1447110 | 0.818731 | 1.681795e-52 | -8.615850e-47 |
| Msa0275400 | Msa1447110 | -0.819307 | 1.243752e-52 | -8.615850e-47 |
| Msa0288730 | Msa1447110 | 0.821427 | 4.060438e-53 | -8.615850e-47 |
| Msa0307110 | Msa1447110 | 0.802114 | 6.540841e-49 | -8.615850e-47 |
| Msa0344870 | Msa1447110 | 0.805798 | 1.121842e-49 | -8.615850e-47 |
| Msa0351080 | Msa1447110 | 0.802787 | 4.754036e-49 | -8.615850e-47 |
| Msa1118760 | Msa1447110 | 0.817559 | 3.097604e-52 | -8.615850e-47 |
| Msa1135880 | Msa1447110 | 0.804051 | 2.600200e-49 | -8.615850e-47 |
| Msa1151000 | Msa1447110 | 0.800913 | 1.152858e-48 | -8.615850e-47 |
| Msa1158660 | Msa1447110 | 0.808027 | 3.789829e-50 | -8.615850e-47 |
| Msa1190890 | Msa1447110 | -0.818058 | 2.390003e-52 | -8.615850e-47 |
| Msa1208890 | Msa1447110 | -0.806358 | 8.553512e-50 | -8.615850e-47 |
| Msa1219810 | Msa1447110 | 0.811757 | 5.966654e-51 | -8.615850e-47 |
| Msa0517490 | Msa1447110 | 0.850840 | 1.308603e-60 | -8.615850e-47 |
| Msa0519220 | Msa1447110 | 0.806716 | 7.186652e-50 | -8.615850e-47 |
| Msa0521310 | Msa1447110 | 0.804633 | 1.967313e-49 | -8.615850e-47 |
| Msa0526710 | Msa1447110 | 0.802585 | 5.231974e-49 | -8.615850e-47 |
| Msa0531990 | Msa1447110 | -0.831726 | 1.418038e-55 | -8.615850e-47 |
| Msa0532100 | Msa1447110 | -0.834083 | 3.678127e-56 | -8.615850e-47 |
| Msa0542160 | Msa1447110 | 0.830714 | 2.513905e-55 | -8.615850e-47 |
| Msa0562440 | Msa1447110 | 0.800378 | 1.482575e-48 | -8.615850e-47 |
| Msa0567020 | Msa1447110 | 0.809995 | 1.436522e-50 | -8.615850e-47 |
| Msa0574760 | Msa1447110 | -0.826300 | 2.925470e-54 | -8.615850e-47 |
| Msa0578090 | Msa1447110 | 0.821433 | 4.048725e-53 | -8.615850e-47 |
| Msa0586850 | Msa1447110 | 0.815189 | 1.050058e-51 | -8.615850e-47 |
| Msa0591770 | Msa1447110 | 0.808153 | 3.561364e-50 | -8.615850e-47 |
| Msa0860900 | Msa1447110 | -0.815897 | 7.304619e-52 | -8.615850e-47 |
| Msa0863800 | Msa1447110 | 0.817366 | 3.422674e-52 | -8.615850e-47 |
| Msa0865890 | Msa1447110 | 0.800458 | 1.428081e-48 | -8.615850e-47 |
| Msa0874500 | Msa1447110 | 0.801835 | 7.465056e-49 | -8.615850e-47 |
| Msa0891040 | Msa1447110 | 0.820766 | 5.767574e-53 | -8.615850e-47 |
| Msa0901630 | Msa1447110 | 0.835225 | 1.899309e-56 | -8.615850e-47 |
| Msa0925660 | Msa1447110 | 0.801975 | 6.987409e-49 | -8.615850e-47 |
| Msa0930910 | Msa1447110 | -0.838943 | 2.129923e-57 | -8.615850e-47 |
| Msa0933440 | Msa1447110 | 0.800274 | 1.556495e-48 | -8.615850e-47 |
| Msa0945100 | Msa1447110 | 0.817555 | 3.103303e-52 | -8.615850e-47 |
| Msa0947530 | Msa1447110 | -0.809775 | 1.601243e-50 | -8.615850e-47 |
| Msa0976250 | Msa1447110 | 0.814565 | 1.444349e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447110 | MtrunA17_Chr1g0210761 | 98.095 | 210 | 4 | 0 | 1 | 210 | 1 | 210 | 2.88e-151 | 418 |
| Msa1447110 | MtrunA17_Chr1g0178711 | 56.373 | 204 | 78 | 1 | 17 | 209 | 20 | 223 | 5.98e-82 | 243 |
| Msa1447110 | MtrunA17_Chr1g0193671 | 42.381 | 210 | 114 | 3 | 7 | 209 | 7 | 216 | 2.89e-53 | 170 |
| Msa1447110 | MtrunA17_Chr7g0271211 | 44.898 | 196 | 99 | 4 | 22 | 209 | 19 | 213 | 2.46e-52 | 167 |
| Msa1447110 | MtrunA17_Chr1g0193421 | 43.434 | 198 | 105 | 3 | 19 | 209 | 20 | 217 | 1.79e-51 | 165 |
| Msa1447110 | MtrunA17_Chr6g0449751 | 43.721 | 215 | 105 | 6 | 7 | 207 | 3 | 215 | 1.14e-47 | 155 |
| Msa1447110 | MtrunA17_Chr6g0449731 | 43.981 | 216 | 106 | 6 | 5 | 207 | 2 | 215 | 2.16e-47 | 155 |
| Msa1447110 | MtrunA17_Chr1g0189841 | 44.059 | 202 | 98 | 6 | 19 | 207 | 18 | 217 | 3.81e-47 | 154 |
| Msa1447110 | MtrunA17_Chr6g0449771 | 44.700 | 217 | 103 | 8 | 5 | 207 | 2 | 215 | 4.71e-47 | 154 |
| Msa1447110 | MtrunA17_Chr6g0449761 | 43.721 | 215 | 108 | 5 | 5 | 207 | 2 | 215 | 4.89e-47 | 155 |
| Msa1447110 | MtrunA17_Chr4g0007031 | 41.627 | 209 | 90 | 7 | 19 | 206 | 18 | 215 | 1.57e-43 | 145 |
| Msa1447110 | MtrunA17_Chr5g0419971 | 41.627 | 209 | 90 | 7 | 19 | 206 | 18 | 215 | 1.57e-43 | 145 |
| Msa1447110 | MtrunA17_Chr5g0419981 | 41.627 | 209 | 90 | 7 | 19 | 206 | 18 | 215 | 1.57e-43 | 145 |
| Msa1447110 | MtrunA17_Chr4g0007051 | 41.546 | 207 | 93 | 7 | 19 | 206 | 18 | 215 | 1.59e-43 | 145 |
| Msa1447110 | MtrunA17_Chr4g0007041 | 40.179 | 224 | 97 | 8 | 9 | 206 | 3 | 215 | 2.24e-43 | 145 |
| Msa1447110 | MtrunA17_Chr2g0285871 | 41.627 | 209 | 90 | 7 | 19 | 206 | 18 | 215 | 3.97e-43 | 144 |
| Msa1447110 | MtrunA17_Chr1g0156131 | 39.109 | 202 | 116 | 4 | 11 | 207 | 10 | 209 | 7.83e-43 | 143 |
| Msa1447110 | MtrunA17_Chr5g0414971 | 41.753 | 194 | 105 | 4 | 22 | 207 | 26 | 219 | 8.38e-43 | 143 |
| Msa1447110 | MtrunA17_Chr2g0292831 | 40.513 | 195 | 108 | 5 | 20 | 207 | 19 | 212 | 3.48e-42 | 141 |
| Msa1447110 | MtrunA17_Chr2g0292901 | 40.957 | 188 | 103 | 5 | 27 | 207 | 27 | 213 | 7.29e-42 | 140 |
| Msa1447110 | MtrunA17_Chr6g0449781 | 40.196 | 204 | 100 | 6 | 19 | 207 | 18 | 214 | 7.01e-38 | 130 |
| Msa1447110 | MtrunA17_Chr2g0300591 | 36.946 | 203 | 119 | 3 | 9 | 204 | 3 | 203 | 2.12e-37 | 129 |
| Msa1447110 | MtrunA17_Chr2g0300581 | 36.765 | 204 | 120 | 3 | 9 | 205 | 3 | 204 | 2.18e-37 | 129 |
| Msa1447110 | MtrunA17_Chr2g0292861 | 41.860 | 172 | 94 | 4 | 42 | 207 | 7 | 178 | 4.59e-37 | 127 |
| Msa1447110 | MtrunA17_Chr2g0300561 | 36.816 | 201 | 122 | 2 | 9 | 204 | 3 | 203 | 6.41e-37 | 128 |
| Msa1447110 | MtrunA17_Chr8g0343911 | 36.058 | 208 | 115 | 5 | 10 | 205 | 1 | 202 | 8.96e-36 | 125 |
| Msa1447110 | MtrunA17_Chr2g0292841 | 41.279 | 172 | 95 | 4 | 42 | 207 | 7 | 178 | 1.07e-35 | 124 |
| Msa1447110 | MtrunA17_Chr2g0313961 | 34.783 | 207 | 124 | 5 | 8 | 207 | 3 | 205 | 1.85e-35 | 124 |
| Msa1447110 | MtrunA17_Chr3g0084531 | 34.300 | 207 | 125 | 5 | 8 | 207 | 3 | 205 | 8.25e-35 | 122 |
| Msa1447110 | MtrunA17_Chr8g0343934 | 35.437 | 206 | 124 | 6 | 8 | 207 | 3 | 205 | 3.06e-34 | 121 |
| Msa1447110 | MtrunA17_Chr8g0344041 | 33.014 | 209 | 131 | 5 | 5 | 207 | 4 | 209 | 3.15e-34 | 121 |
| Msa1447110 | MtrunA17_Chr2g0297231 | 33.816 | 207 | 126 | 5 | 8 | 207 | 3 | 205 | 3.18e-34 | 120 |
| Msa1447110 | MtrunA17_Chr3g0130241 | 41.765 | 170 | 87 | 2 | 15 | 172 | 75 | 244 | 9.63e-34 | 122 |
| Msa1447110 | MtrunA17_Chr2g0321601 | 34.286 | 210 | 112 | 5 | 12 | 208 | 8 | 204 | 1.40e-33 | 119 |
| Msa1447110 | MtrunA17_Chr8g0343921 | 32.367 | 207 | 129 | 5 | 8 | 207 | 1 | 203 | 4.12e-33 | 118 |
| Msa1447110 | MtrunA17_Chr2g0297241 | 33.333 | 207 | 127 | 5 | 8 | 207 | 3 | 205 | 5.04e-33 | 118 |
| Msa1447110 | MtrunA17_Chr6g0449791 | 39.109 | 202 | 108 | 5 | 7 | 197 | 9 | 206 | 5.89e-33 | 117 |
| Msa1447110 | MtrunA17_Chr2g0302171 | 36.517 | 178 | 106 | 4 | 33 | 207 | 32 | 205 | 6.12e-33 | 117 |
| Msa1447110 | MtrunA17_Chr3g0084521 | 35.266 | 207 | 119 | 6 | 8 | 207 | 6 | 204 | 1.03e-32 | 117 |
| Msa1447110 | MtrunA17_Chr8g0343954 | 37.433 | 187 | 108 | 6 | 27 | 207 | 22 | 205 | 1.13e-32 | 117 |
| Msa1447110 | MtrunA17_Chr3g0084511 | 35.749 | 207 | 118 | 7 | 8 | 207 | 6 | 204 | 4.02e-32 | 115 |
| Msa1447110 | MtrunA17_Chr8g0335851 | 35.294 | 187 | 113 | 2 | 22 | 200 | 25 | 211 | 7.75e-32 | 115 |
| Msa1447110 | MtrunA17_Chr2g0301611 | 32.850 | 207 | 128 | 5 | 8 | 207 | 3 | 205 | 1.11e-31 | 114 |
| Msa1447110 | MtrunA17_Chr8g0343961 | 33.990 | 203 | 125 | 5 | 11 | 207 | 6 | 205 | 2.31e-31 | 113 |
| Msa1447110 | MtrunA17_Chr4g0003361 | 33.163 | 196 | 122 | 4 | 16 | 207 | 11 | 201 | 2.85e-31 | 113 |
| Msa1447110 | MtrunA17_Chr4g0026191 | 33.019 | 212 | 122 | 5 | 5 | 208 | 7 | 206 | 2.39e-30 | 110 |
| Msa1447110 | MtrunA17_Chr8g0344021 | 33.173 | 208 | 128 | 4 | 8 | 207 | 4 | 208 | 4.67e-30 | 110 |
| Msa1447110 | MtrunA17_Chr2g0321581 | 31.731 | 208 | 120 | 5 | 12 | 208 | 9 | 205 | 7.33e-30 | 109 |
| Msa1447110 | MtrunA17_Chr2g0321591 | 31.731 | 208 | 120 | 5 | 12 | 208 | 9 | 205 | 7.57e-30 | 109 |
| Msa1447110 | MtrunA17_Chr4g0026201 | 37.500 | 160 | 96 | 2 | 53 | 208 | 47 | 206 | 1.64e-29 | 108 |
| Msa1447110 | MtrunA17_Chr2g0302541 | 34.574 | 188 | 112 | 5 | 27 | 207 | 22 | 205 | 2.79e-28 | 105 |
| Msa1447110 | MtrunA17_Chr3g0115141 | 34.595 | 185 | 110 | 5 | 29 | 207 | 27 | 206 | 8.94e-28 | 104 |
| Msa1447110 | MtrunA17_Chr4g0012651 | 33.511 | 188 | 114 | 5 | 27 | 207 | 22 | 205 | 1.53e-27 | 103 |
| Msa1447110 | MtrunA17_Chr7g0217811 | 31.351 | 185 | 122 | 2 | 27 | 207 | 22 | 205 | 2.79e-27 | 103 |
| Msa1447110 | MtrunA17_Chr2g0292911 | 45.299 | 117 | 61 | 2 | 42 | 155 | 7 | 123 | 5.62e-27 | 100 |
| Msa1447110 | MtrunA17_Chr5g0411961 | 30.435 | 207 | 133 | 5 | 8 | 207 | 3 | 205 | 5.99e-27 | 102 |
| Msa1447110 | MtrunA17_Chr8g0344051 | 30.097 | 206 | 137 | 3 | 8 | 207 | 4 | 208 | 8.21e-27 | 102 |
| Msa1447110 | MtrunA17_Chr8g0344031 | 32.857 | 210 | 125 | 8 | 8 | 207 | 4 | 207 | 8.55e-27 | 102 |
| Msa1447110 | MtrunA17_Chr2g0286171 | 32.258 | 186 | 113 | 7 | 29 | 207 | 29 | 208 | 1.95e-24 | 95.9 |
| Msa1447110 | MtrunA17_Chr3g0084551 | 29.064 | 203 | 129 | 5 | 8 | 204 | 3 | 196 | 6.12e-21 | 87.0 |
| Msa1447110 | MtrunA17_Chr3g0084501 | 34.906 | 106 | 59 | 4 | 8 | 106 | 3 | 105 | 3.17e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447110 | AT3G10080.1 | 60.194 | 206 | 70 | 3 | 13 | 209 | 19 | 221 | 1.56e-86 | 255 |
| Msa1447110 | AT3G10080.2 | 60.194 | 206 | 70 | 3 | 13 | 209 | 90 | 292 | 6.09e-86 | 256 |
| Msa1447110 | AT1G02335.1 | 42.326 | 215 | 116 | 4 | 1 | 207 | 1 | 215 | 7.56e-56 | 177 |
| Msa1447110 | AT3G04200.1 | 45.070 | 213 | 104 | 5 | 8 | 209 | 14 | 224 | 1.12e-53 | 172 |
| Msa1447110 | AT1G18980.1 | 45.192 | 208 | 105 | 4 | 7 | 207 | 13 | 218 | 9.39e-53 | 169 |
| Msa1447110 | AT1G18970.1 | 42.308 | 208 | 111 | 4 | 7 | 207 | 13 | 218 | 1.09e-51 | 166 |
| Msa1447110 | AT5G26700.1 | 40.865 | 208 | 116 | 4 | 7 | 209 | 6 | 211 | 1.98e-51 | 165 |
| Msa1447110 | AT3G62020.1 | 43.204 | 206 | 109 | 4 | 12 | 209 | 12 | 217 | 2.90e-51 | 165 |
| Msa1447110 | AT5G39160.3 | 41.346 | 208 | 112 | 5 | 7 | 207 | 11 | 215 | 1.28e-50 | 163 |
| Msa1447110 | AT5G39160.1 | 40.845 | 213 | 110 | 6 | 7 | 207 | 11 | 219 | 1.48e-50 | 163 |
| Msa1447110 | AT5G39130.1 | 40.376 | 213 | 111 | 6 | 7 | 207 | 11 | 219 | 2.42e-50 | 163 |
| Msa1447110 | AT5G39190.1 | 40.845 | 213 | 110 | 6 | 7 | 207 | 11 | 219 | 2.58e-50 | 163 |
| Msa1447110 | AT1G09560.1 | 44.103 | 195 | 102 | 3 | 22 | 209 | 23 | 217 | 3.53e-50 | 162 |
| Msa1447110 | AT5G38960.1 | 44.059 | 202 | 99 | 5 | 19 | 207 | 22 | 222 | 5.20e-50 | 162 |
| Msa1447110 | AT3G05950.1 | 43.925 | 214 | 105 | 6 | 7 | 208 | 12 | 222 | 9.26e-50 | 162 |
| Msa1447110 | AT3G05930.1 | 38.710 | 217 | 125 | 3 | 1 | 209 | 1 | 217 | 8.84e-49 | 159 |
| Msa1447110 | AT5G39110.1 | 41.014 | 217 | 113 | 6 | 5 | 207 | 5 | 220 | 2.48e-48 | 158 |
| Msa1447110 | AT5G39180.1 | 40.845 | 213 | 112 | 5 | 8 | 207 | 8 | 219 | 9.32e-48 | 156 |
| Msa1447110 | AT5G38910.1 | 42.326 | 215 | 109 | 6 | 6 | 207 | 7 | 219 | 1.06e-47 | 156 |
| Msa1447110 | AT3G62020.2 | 45.699 | 186 | 95 | 4 | 28 | 209 | 5 | 188 | 1.48e-47 | 155 |
| Msa1447110 | AT5G38940.1 | 42.424 | 198 | 101 | 5 | 22 | 207 | 25 | 221 | 1.56e-47 | 155 |
| Msa1447110 | AT5G38940.2 | 42.424 | 198 | 101 | 5 | 22 | 207 | 49 | 245 | 2.17e-47 | 156 |
| Msa1447110 | AT5G39150.1 | 40.845 | 213 | 112 | 5 | 8 | 207 | 8 | 219 | 2.34e-47 | 155 |
| Msa1447110 | AT5G39120.1 | 40.639 | 219 | 113 | 6 | 5 | 207 | 2 | 219 | 5.88e-47 | 154 |
| Msa1447110 | AT5G39160.2 | 39.130 | 207 | 100 | 6 | 7 | 207 | 11 | 197 | 4.42e-45 | 149 |
| Msa1447110 | AT5G39190.2 | 39.130 | 207 | 100 | 6 | 7 | 207 | 11 | 197 | 6.53e-45 | 148 |
| Msa1447110 | AT3G04180.1 | 39.500 | 200 | 110 | 4 | 20 | 208 | 23 | 222 | 9.18e-45 | 149 |
| Msa1447110 | AT4G14630.1 | 39.500 | 200 | 107 | 5 | 21 | 207 | 24 | 222 | 1.96e-44 | 148 |
| Msa1447110 | AT3G04170.1 | 41.315 | 213 | 111 | 6 | 8 | 210 | 13 | 221 | 2.43e-44 | 148 |
| Msa1447110 | AT3G04150.1 | 39.623 | 212 | 115 | 5 | 8 | 208 | 13 | 222 | 6.23e-44 | 147 |
| Msa1447110 | AT5G38930.1 | 40.201 | 199 | 106 | 5 | 21 | 207 | 24 | 221 | 2.19e-43 | 145 |
| Msa1447110 | AT3G04190.1 | 40.299 | 201 | 107 | 5 | 20 | 208 | 23 | 222 | 2.79e-43 | 145 |
| Msa1447110 | AT3G04150.2 | 38.222 | 225 | 113 | 6 | 8 | 208 | 13 | 235 | 2.63e-42 | 143 |
| Msa1447110 | AT5G20630.1 | 38.798 | 183 | 107 | 2 | 27 | 204 | 22 | 204 | 1.63e-39 | 135 |
| Msa1447110 | AT1G10460.1 | 36.181 | 199 | 113 | 5 | 22 | 207 | 18 | 215 | 6.69e-39 | 133 |
| Msa1447110 | AT5G61750.1 | 38.983 | 177 | 101 | 3 | 9 | 178 | 5 | 181 | 2.05e-34 | 122 |
| Msa1447110 | AT1G74820.1 | 31.390 | 223 | 134 | 6 | 2 | 208 | 7 | 226 | 3.89e-33 | 119 |
| Msa1447110 | AT1G72610.1 | 36.508 | 189 | 103 | 3 | 27 | 204 | 19 | 201 | 4.37e-33 | 118 |
| Msa1447110 | AT5G38910.2 | 35.681 | 213 | 89 | 6 | 6 | 207 | 7 | 182 | 5.52e-31 | 112 |
| Msa1447110 | AT5G38950.1 | 49.206 | 63 | 30 | 1 | 138 | 198 | 2 | 64 | 3.05e-12 | 61.2 |
Find 20 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGATTAAAGATGAGCTTT+TGG | 0.263245 | tig0031598:-9634 | Msa1447110:CDS |
| GAATTTGTTATCTTCTGATT+TGG | 0.267937 | tig0031598:+10082 | None:intergenic |
| CCAGTATCTTTGAAGTTTCC+TGG | 0.322734 | tig0031598:+9999 | None:intergenic |
| TTCTGATCCGGATCCTGTTA+TGG | 0.323739 | tig0031598:-10117 | Msa1447110:CDS |
| GTGAATTCAAATGTGTTTCC+AGG | 0.358885 | tig0031598:-9960 | Msa1447110:CDS |
| CCAGGAAACTTCAAAGATAC+TGG | 0.364740 | tig0031598:-9999 | Msa1447110:CDS |
| TTTGGAGAAAGGTGAGGTTA+TGG | 0.393881 | tig0031598:-9778 | Msa1447110:CDS |
| TGAAAATGCACAAGTCCTCT+TGG | 0.414763 | tig0031598:+9750 | None:intergenic |
| GCTATGCAGTAATCCATAAC+AGG | 0.434646 | tig0031598:+10104 | None:intergenic |
| ATAGCAACTTCTGTTGCTCT+TGG | 0.444865 | tig0031598:+9864 | None:intergenic |
| CAGTAATCCATAACAGGATC+CGG | 0.469062 | tig0031598:+10110 | None:intergenic |
| TTTCCAGGTTTAAACACTCT+TGG | 0.469660 | tig0031598:-9945 | Msa1447110:CDS |
| AGAAGTTGCTATTGTGTTGG+AGG | 0.523101 | tig0031598:-9853 | Msa1447110:CDS |
| AACAGAAGTTGCTATTGTGT+TGG | 0.541553 | tig0031598:-9856 | Msa1447110:CDS |
| ACACATAAGAACTAAAAGAA+TGG | 0.546948 | tig0031598:+10160 | None:intergenic |
| GAAGTTGCTATTGTGTTGGA+GGG | 0.567803 | tig0031598:-9852 | Msa1447110:CDS |
| ACTCCAAGAGTGTTTAAACC+TGG | 0.567991 | tig0031598:+9942 | None:intergenic |
| GAAATCTTCAACTGTTGCTG+TGG | 0.571728 | tig0031598:+10043 | None:intergenic |
| AGCTTTCTAAGTTAAAGAAG+AGG | 0.576087 | tig0031598:-9584 | Msa1447110:CDS |
| GTTGCTCTTGGATGAAAGTG+AGG | 0.618955 | tig0031598:+9876 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTCCAAATGTTGTTTT+TGG | - | tig0031598:10088-10107 | Msa1447110:CDS | 20.0% |
| ! | ACACATAAGAACTAAAAGAA+TGG | + | tig0031598:9591-9610 | None:intergenic | 25.0% |
| !!! | GAATTTGTTATCTTCTGATT+TGG | + | tig0031598:9669-9688 | None:intergenic | 25.0% |
| !! | CAAGATTTTTGCTAAAGTTT+TGG | - | tig0031598:9952-9971 | Msa1447110:CDS | 25.0% |
| !!! | GTTGAAGATTTCACTTTTTC+TGG | - | tig0031598:9716-9735 | Msa1447110:CDS | 30.0% |
| !! | TTTTCTGGTATAAAACTACC+AGG | - | tig0031598:9731-9750 | Msa1447110:CDS | 30.0% |
| ! | AGATACTGGATTTTCTTCAA+TGG | - | tig0031598:9763-9782 | Msa1447110:CDS | 30.0% |
| ! | GATACTGGATTTTCTTCAAT+GGG | - | tig0031598:9764-9783 | Msa1447110:CDS | 30.0% |
| TTGGAGGGAAAAATTTATTC+AGG | - | tig0031598:9911-9930 | Msa1447110:CDS | 30.0% | |
| !!! | TTTGCTAAAGTTTTGGAGAA+AGG | - | tig0031598:9959-9978 | Msa1447110:CDS | 30.0% |
| AAACTACCAAAAATAGTAGC+AGG | + | tig0031598:10043-10062 | None:intergenic | 30.0% | |
| !! | AGTTTTGATAGTCAAAATCC+TGG | - | tig0031598:10058-10077 | Msa1447110:CDS | 30.0% |
| !! | TTTGGAATTTTCATCAAACC+AGG | + | tig0031598:10079-10098 | None:intergenic | 30.0% |
| TGAGATCCAAAAACAACATT+TGG | + | tig0031598:10097-10116 | None:intergenic | 30.0% | |
| ! | TCAGATTAAAGATGAGCTTT+TGG | - | tig0031598:10114-10133 | Msa1447110:CDS | 30.0% |
| ! | AGCTTTTGGACTTAATTCTA+AGG | - | tig0031598:10141-10160 | Msa1447110:CDS | 30.0% |
| AGCTTTCTAAGTTAAAGAAG+AGG | - | tig0031598:10164-10183 | Msa1447110:CDS | 30.0% | |
| GTGAATTCAAATGTGTTTCC+AGG | - | tig0031598:9788-9807 | Msa1447110:CDS | 35.0% | |
| TTTCCAGGTTTAAACACTCT+TGG | - | tig0031598:9803-9822 | Msa1447110:CDS | 35.0% | |
| !! | GTTAGAGCAGATTTTGATGT+TGG | - | tig0031598:9836-9855 | Msa1447110:CDS | 35.0% |
| ! | AACAGAAGTTGCTATTGTGT+TGG | - | tig0031598:9892-9911 | Msa1447110:CDS | 35.0% |
| !!! | TAAAGTTTTGGAGAAAGGTG+AGG | - | tig0031598:9964-9983 | Msa1447110:CDS | 35.0% |
| ! | GTGCATTTTCAGATGAATGT+TGG | - | tig0031598:10010-10029 | Msa1447110:CDS | 35.0% |
| ! | GATGTTCCTGCTACTATTTT+TGG | - | tig0031598:10034-10053 | Msa1447110:CDS | 35.0% |
| !! | GAGCTTTTGGAAAAAGCTTT+TGG | - | tig0031598:10127-10146 | Msa1447110:CDS | 35.0% |
| !!! | TGCTGCTTTTTGTTCTGATC+CGG | - | tig0031598:9619-9638 | Msa1447110:CDS | 40.0% |
| CAGTAATCCATAACAGGATC+CGG | + | tig0031598:9641-9660 | None:intergenic | 40.0% | |
| GCTATGCAGTAATCCATAAC+AGG | + | tig0031598:9647-9666 | None:intergenic | 40.0% | |
| GAAATCTTCAACTGTTGCTG+TGG | + | tig0031598:9708-9727 | None:intergenic | 40.0% | |
| !! | CCAGTATCTTTGAAGTTTCC+TGG | + | tig0031598:9752-9771 | None:intergenic | 40.0% |
| CCAGGAAACTTCAAAGATAC+TGG | - | tig0031598:9749-9768 | Msa1447110:CDS | 40.0% | |
| !! | ACTCCAAGAGTGTTTAAACC+TGG | + | tig0031598:9809-9828 | None:intergenic | 40.0% |
| !! | AGAGCAGATTTTGATGTTGG+TGG | - | tig0031598:9839-9858 | Msa1447110:CDS | 40.0% |
| ATAGCAACTTCTGTTGCTCT+TGG | + | tig0031598:9887-9906 | None:intergenic | 40.0% | |
| ! | AGAAGTTGCTATTGTGTTGG+AGG | - | tig0031598:9895-9914 | Msa1447110:CDS | 40.0% |
| ! | GAAGTTGCTATTGTGTTGGA+GGG | - | tig0031598:9896-9915 | Msa1447110:CDS | 40.0% |
| TTTGGAGAAAGGTGAGGTTA+TGG | - | tig0031598:9970-9989 | Msa1447110:CDS | 40.0% | |
| ! | GAGGTTATGGTTTTTCCAAG+AGG | - | tig0031598:9983-10002 | Msa1447110:CDS | 40.0% |
| TGAAAATGCACAAGTCCTCT+TGG | + | tig0031598:10001-10020 | None:intergenic | 40.0% | |
| TTCTGATCCGGATCCTGTTA+TGG | - | tig0031598:9631-9650 | Msa1447110:CDS | 45.0% | |
| GTTGCTCTTGGATGAAAGTG+AGG | + | tig0031598:9875-9894 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031598 | gene | 9569 | 10201 | 9569 | ID=Msa1447110;Name=Msa1447110 |
| tig0031598 | mRNA | 9569 | 10201 | 9569 | ID=Msa1447110-mRNA-1;Parent=Msa1447110;Name=Msa1447110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|210 |
| tig0031598 | exon | 9569 | 10201 | 9569 | ID=Msa1447110-mRNA-1:exon:15748;Parent=Msa1447110-mRNA-1 |
| tig0031598 | CDS | 9569 | 10201 | 9569 | ID=Msa1447110-mRNA-1:cds;Parent=Msa1447110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
