Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1090990 | XP_013447781.1 | 96.364 | 165 | 3 | 1 | 1 | 165 | 1 | 162 | 1.34e-112 | 327 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1090990 | sp|Q9SGU2|SAU71_ARATH | 46.479 | 71 | 38 | 0 | 60 | 130 | 28 | 98 | 9.40e-17 | 74.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1090990 | I3T7S1 | 96.364 | 165 | 3 | 1 | 1 | 165 | 1 | 162 | 6.42e-113 | 327 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004940 | Msa1090990 | 0.805632 | 1.215559e-49 | -8.615850e-47 |
Msa0004990 | Msa1090990 | 0.805691 | 1.181583e-49 | -8.615850e-47 |
Msa0012800 | Msa1090990 | 0.802530 | 5.369905e-49 | -8.615850e-47 |
Msa0036550 | Msa1090990 | 0.800590 | 1.342219e-48 | -8.615850e-47 |
Msa0038010 | Msa1090990 | 0.836068 | 1.161930e-56 | -8.615850e-47 |
Msa0043840 | Msa1090990 | 0.815198 | 1.045550e-51 | -8.615850e-47 |
Msa0053040 | Msa1090990 | 0.807185 | 5.719174e-50 | -8.615850e-47 |
Msa0059880 | Msa1090990 | 0.810269 | 1.253755e-50 | -8.615850e-47 |
Msa0085710 | Msa1090990 | 0.822327 | 2.513797e-53 | -8.615850e-47 |
Msa0090500 | Msa1090990 | 0.805232 | 1.474679e-49 | -8.615850e-47 |
Msa0096860 | Msa1090990 | 0.807377 | 5.206794e-50 | -8.615850e-47 |
Msa0098380 | Msa1090990 | 0.808875 | 2.498228e-50 | -8.615850e-47 |
Msa0622890 | Msa1090990 | 0.830530 | 2.787815e-55 | -8.615850e-47 |
Msa0641700 | Msa1090990 | 0.839200 | 1.826742e-57 | -8.615850e-47 |
Msa0655370 | Msa1090990 | 0.818037 | 2.415252e-52 | -8.615850e-47 |
Msa0666580 | Msa1090990 | 0.802872 | 4.565413e-49 | -8.615850e-47 |
Msa0670360 | Msa1090990 | 0.806662 | 7.377923e-50 | -8.615850e-47 |
Msa0680460 | Msa1090990 | 0.820300 | 7.378903e-53 | -8.615850e-47 |
Msa0689840 | Msa1090990 | 0.830095 | 3.561107e-55 | -8.615850e-47 |
Msa0711240 | Msa1090990 | 0.810505 | 1.114697e-50 | -8.615850e-47 |
Msa0717030 | Msa1090990 | 0.811733 | 6.040442e-51 | -8.615850e-47 |
Msa0718770 | Msa1090990 | 0.807224 | 5.612133e-50 | -8.615850e-47 |
Msa0721260 | Msa1090990 | 0.804313 | 2.293667e-49 | -8.615850e-47 |
Msa0728520 | Msa1090990 | 0.813893 | 2.032573e-51 | -8.615850e-47 |
Msa0730890 | Msa1090990 | 0.801042 | 1.085150e-48 | -8.615850e-47 |
Msa0735340 | Msa1090990 | 0.811425 | 7.044996e-51 | -8.615850e-47 |
Msa0736560 | Msa1090990 | 0.801824 | 7.504163e-49 | -8.615850e-47 |
Msa0738570 | Msa1090990 | 0.802968 | 4.360370e-49 | -8.615850e-47 |
Msa0747710 | Msa1090990 | 0.807399 | 5.151069e-50 | -8.615850e-47 |
Msa0750790 | Msa1090990 | 0.812512 | 4.084570e-51 | -8.615850e-47 |
Msa0750830 | Msa1090990 | 0.819091 | 1.393411e-52 | -8.615850e-47 |
Msa0753410 | Msa1090990 | 0.826769 | 2.261216e-54 | -8.615850e-47 |
Msa0756570 | Msa1090990 | 0.818322 | 2.082087e-52 | -8.615850e-47 |
Msa0758150 | Msa1090990 | 0.816202 | 6.244731e-52 | -8.615850e-47 |
Msa0776540 | Msa1090990 | 0.817152 | 3.824912e-52 | -8.615850e-47 |
Msa0777070 | Msa1090990 | 0.802422 | 5.652781e-49 | -8.615850e-47 |
Msa0783580 | Msa1090990 | 0.802333 | 5.896150e-49 | -8.615850e-47 |
Msa0792410 | Msa1090990 | 0.802240 | 6.162856e-49 | -8.615850e-47 |
Msa0794200 | Msa1090990 | 0.803211 | 3.884169e-49 | -8.615850e-47 |
Msa0795320 | Msa1090990 | 0.801635 | 8.203798e-49 | -8.615850e-47 |
Msa0795330 | Msa1090990 | 0.822055 | 2.906906e-53 | -8.615850e-47 |
Msa0799110 | Msa1090990 | 0.803005 | 4.285084e-49 | -8.615850e-47 |
Msa0817100 | Msa1090990 | 0.813138 | 2.978284e-51 | -8.615850e-47 |
Msa0819110 | Msa1090990 | 0.813223 | 2.853968e-51 | -8.615850e-47 |
Msa0827800 | Msa1090990 | 0.804020 | 2.639671e-49 | -8.615850e-47 |
Msa0130360 | Msa1090990 | 0.804448 | 2.149858e-49 | -8.615850e-47 |
Msa0130710 | Msa1090990 | 0.803596 | 3.233273e-49 | -8.615850e-47 |
Msa0132250 | Msa1090990 | 0.835377 | 1.738908e-56 | -8.615850e-47 |
Msa0137970 | Msa1090990 | 0.808798 | 2.594858e-50 | -8.615850e-47 |
Msa0154750 | Msa1090990 | 0.816868 | 4.429869e-52 | -8.615850e-47 |
Msa0175060 | Msa1090990 | 0.820595 | 6.311966e-53 | -8.615850e-47 |
Msa0176600 | Msa1090990 | 0.805830 | 1.104605e-49 | -8.615850e-47 |
Msa0183920 | Msa1090990 | 0.807872 | 4.088861e-50 | -8.615850e-47 |
Msa0189150 | Msa1090990 | -0.801537 | 8.593705e-49 | -8.615850e-47 |
Msa0424240 | Msa1090990 | 0.803541 | 3.318789e-49 | -8.615850e-47 |
Msa0430040 | Msa1090990 | -0.804918 | 1.715135e-49 | -8.615850e-47 |
Msa0433090 | Msa1090990 | 0.816833 | 4.510304e-52 | -8.615850e-47 |
Msa0449500 | Msa1090990 | 0.801372 | 9.289549e-49 | -8.615850e-47 |
Msa0464310 | Msa1090990 | 0.808859 | 2.518006e-50 | -8.615850e-47 |
Msa0478400 | Msa1090990 | 0.805179 | 1.512228e-49 | -8.615850e-47 |
Msa0987020 | Msa1090990 | 0.801946 | 7.081247e-49 | -8.615850e-47 |
Msa0987550 | Msa1090990 | 0.814536 | 1.465327e-51 | -8.615850e-47 |
Msa1003120 | Msa1090990 | 0.971400 | 4.190844e-133 | -8.615850e-47 |
Msa1031060 | Msa1090990 | 0.804485 | 2.111888e-49 | -8.615850e-47 |
Msa1036590 | Msa1090990 | 0.811052 | 8.488113e-51 | -8.615850e-47 |
Msa1037530 | Msa1090990 | 0.803732 | 3.029296e-49 | -8.615850e-47 |
Msa1046220 | Msa1090990 | 0.812057 | 5.135260e-51 | -8.615850e-47 |
Msa1047300 | Msa1090990 | 0.815442 | 9.224616e-52 | -8.615850e-47 |
Msa1047340 | Msa1090990 | 0.815614 | 8.445060e-52 | -8.615850e-47 |
Msa1048390 | Msa1090990 | 0.806835 | 6.783108e-50 | -8.615850e-47 |
Msa1061840 | Msa1090990 | 0.811189 | 7.926710e-51 | -8.615850e-47 |
Msa1063260 | Msa1090990 | 0.813476 | 2.510862e-51 | -8.615850e-47 |
Msa1076900 | Msa1090990 | 0.813760 | 2.174041e-51 | -8.615850e-47 |
Msa1084800 | Msa1090990 | 0.802473 | 5.518801e-49 | -8.615850e-47 |
Msa1085820 | Msa1090990 | 0.814277 | 1.672206e-51 | -8.615850e-47 |
Msa1090990 | Msa1099640 | 0.801142 | 1.035443e-48 | -8.615850e-47 |
Msa1090990 | Msa1100330 | 0.833093 | 6.499486e-56 | -8.615850e-47 |
Msa1090990 | Msa1109540 | 0.804137 | 2.495456e-49 | -8.615850e-47 |
Msa1090990 | Msa1110900 | 0.810072 | 1.382667e-50 | -8.615850e-47 |
Msa1090990 | Msa1111650 | 0.808216 | 3.454255e-50 | -8.615850e-47 |
Msa1090990 | Msa1119670 | 0.806721 | 7.169824e-50 | -8.615850e-47 |
Msa1090990 | Msa1124220 | 0.800353 | 1.499772e-48 | -8.615850e-47 |
Msa1090990 | Msa1126460 | 0.803935 | 2.748762e-49 | -8.615850e-47 |
Msa1090990 | Msa1133850 | 0.978806 | 1.329657e-146 | -8.615850e-47 |
Msa1090990 | Msa1156240 | 0.803638 | 3.168762e-49 | -8.615850e-47 |
Msa1090990 | Msa1165860 | 0.801760 | 7.734156e-49 | -8.615850e-47 |
Msa1090990 | Msa1191270 | 0.820722 | 5.903017e-53 | -8.615850e-47 |
Msa1090990 | Msa1206330 | 0.805828 | 1.105481e-49 | -8.615850e-47 |
Msa1090990 | Msa1211160 | 0.800723 | 1.260586e-48 | -8.615850e-47 |
Msa1090990 | Msa1211320 | 0.822250 | 2.619295e-53 | -8.615850e-47 |
Msa1090990 | Msa1223620 | 0.802883 | 4.541949e-49 | -8.615850e-47 |
Msa1090990 | Msa1239190 | 0.806803 | 6.887516e-50 | -8.615850e-47 |
Msa1090990 | Msa1259570 | 0.826266 | 2.980307e-54 | -8.615850e-47 |
Msa1090990 | Msa1263520 | 0.802606 | 5.179853e-49 | -8.615850e-47 |
Msa1090990 | Msa1269500 | 0.805200 | 1.497589e-49 | -8.615850e-47 |
Msa1090990 | Msa1303150 | 0.804632 | 1.968319e-49 | -8.615850e-47 |
Msa1090990 | Msa1317740 | 0.802863 | 4.583808e-49 | -8.615850e-47 |
Msa1090990 | Msa1334000 | 0.806376 | 8.477583e-50 | -8.615850e-47 |
Msa1090990 | Msa1335500 | 0.809470 | 1.862274e-50 | -8.615850e-47 |
Msa1090990 | Msa1338510 | 0.805477 | 1.309830e-49 | -8.615850e-47 |
Msa1090990 | Msa1355340 | 0.800773 | 1.231621e-48 | -8.615850e-47 |
Msa1090990 | Msa1357840 | 0.831173 | 1.939387e-55 | -8.615850e-47 |
Msa1090990 | Msa1362520 | 0.803245 | 3.822687e-49 | -8.615850e-47 |
Msa1090990 | Msa1364690 | 0.827057 | 1.930718e-54 | -8.615850e-47 |
Msa1090990 | Msa1373560 | 0.804739 | 1.869569e-49 | -8.615850e-47 |
Msa1090990 | Msa1376520 | 0.805068 | 1.595238e-49 | -8.615850e-47 |
Msa1090990 | Msa1377190 | 0.833281 | 5.836646e-56 | -8.615850e-47 |
Msa1090990 | Msa1377460 | 0.815805 | 7.657012e-52 | -8.615850e-47 |
Msa1090990 | Msa1378950 | 0.815197 | 1.046060e-51 | -8.615850e-47 |
Msa1090990 | Msa1409060 | 0.809660 | 1.695154e-50 | -8.615850e-47 |
Msa1090990 | Msa1417220 | 0.809414 | 1.914360e-50 | -8.615850e-47 |
Msa1090990 | Msa1437590 | 0.818665 | 1.740609e-52 | -8.615850e-47 |
Msa1090990 | Msa1441300 | 0.802930 | 4.441427e-49 | -8.615850e-47 |
Msa1090990 | Msa1445780 | 0.828127 | 1.068630e-54 | -8.615850e-47 |
Msa1090990 | Msa1446090 | 0.812202 | 4.772726e-51 | -8.615850e-47 |
Msa1090990 | Msa1453540 | -0.802013 | 6.861224e-49 | -8.615850e-47 |
Msa1090990 | Msa1453890 | 0.801430 | 9.037667e-49 | -8.615850e-47 |
Msa1090990 | Msa1462610 | 0.803234 | 3.841370e-49 | -8.615850e-47 |
Msa0240580 | Msa1090990 | 0.814967 | 1.176329e-51 | -8.615850e-47 |
Msa0245660 | Msa1090990 | 0.837041 | 6.567146e-57 | -8.615850e-47 |
Msa0258010 | Msa1090990 | 0.800530 | 1.380545e-48 | -8.615850e-47 |
Msa0278960 | Msa1090990 | 0.813181 | 2.914171e-51 | -8.615850e-47 |
Msa0280160 | Msa1090990 | 0.804850 | 1.772461e-49 | -8.615850e-47 |
Msa0307630 | Msa1090990 | 0.801008 | 1.102447e-48 | -8.615850e-47 |
Msa0322460 | Msa1090990 | 0.804832 | 1.787508e-49 | -8.615850e-47 |
Msa0331190 | Msa1090990 | 0.800902 | 1.159020e-48 | -8.615850e-47 |
Msa0336640 | Msa1090990 | 0.816907 | 4.341227e-52 | -8.615850e-47 |
Msa0502940 | Msa1090990 | 0.809068 | 2.271326e-50 | -8.615850e-47 |
Msa0524710 | Msa1090990 | 0.819042 | 1.429608e-52 | -8.615850e-47 |
Msa0538450 | Msa1090990 | 0.806771 | 6.996007e-50 | -8.615850e-47 |
Msa0538520 | Msa1090990 | 0.806799 | 6.902271e-50 | -8.615850e-47 |
Msa0538650 | Msa1090990 | 0.802528 | 5.374666e-49 | -8.615850e-47 |
Msa0554660 | Msa1090990 | 0.801940 | 7.103692e-49 | -8.615850e-47 |
Msa0561830 | Msa1090990 | 0.801384 | 9.237836e-49 | -8.615850e-47 |
Msa0568920 | Msa1090990 | 0.827905 | 1.208175e-54 | -8.615850e-47 |
Msa0597800 | Msa1090990 | 0.802101 | 6.582601e-49 | -8.615850e-47 |
Msa0597820 | Msa1090990 | 0.808837 | 2.545048e-50 | -8.615850e-47 |
Msa0601400 | Msa1090990 | 0.810077 | 1.378846e-50 | -8.615850e-47 |
Msa0847140 | Msa1090990 | 0.816093 | 6.603797e-52 | -8.615850e-47 |
Msa0854840 | Msa1090990 | 0.801745 | 7.787155e-49 | -8.615850e-47 |
Msa0863840 | Msa1090990 | 0.815101 | 1.098235e-51 | -8.615850e-47 |
Msa0863850 | Msa1090990 | 0.810226 | 1.280983e-50 | -8.615850e-47 |
Msa0868820 | Msa1090990 | 0.800346 | 1.504799e-48 | -8.615850e-47 |
Msa0870170 | Msa1090990 | 0.803978 | 2.692959e-49 | -8.615850e-47 |
Msa0874750 | Msa1090990 | 0.827333 | 1.658186e-54 | -8.615850e-47 |
Msa0886370 | Msa1090990 | 0.810229 | 1.278736e-50 | -8.615850e-47 |
Msa0890210 | Msa1090990 | 0.802227 | 6.200795e-49 | -8.615850e-47 |
Msa0896920 | Msa1090990 | 0.820462 | 6.771930e-53 | -8.615850e-47 |
Msa0902340 | Msa1090990 | 0.817450 | 3.276782e-52 | -8.615850e-47 |
Msa0910590 | Msa1090990 | 0.822059 | 2.900930e-53 | -8.615850e-47 |
Msa0911490 | Msa1090990 | -0.800249 | 1.574874e-48 | -8.615850e-47 |
Msa0913500 | Msa1090990 | 0.827688 | 1.362727e-54 | -8.615850e-47 |
Msa0931370 | Msa1090990 | 0.813255 | 2.808213e-51 | -8.615850e-47 |
Msa0933610 | Msa1090990 | 0.801322 | 9.510895e-49 | -8.615850e-47 |
Msa0948430 | Msa1090990 | 0.821139 | 4.733528e-53 | -8.615850e-47 |
Msa0951060 | Msa1090990 | 0.803308 | 3.708834e-49 | -8.615850e-47 |
Msa0976400 | Msa1090990 | 0.807403 | 5.141887e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1090990 | MtrunA17_Chr7g0214201 | 96.364 | 165 | 3 | 1 | 1 | 165 | 1 | 162 | 1.24e-116 | 327 |
Msa1090990 | MtrunA17_Chr3g0131991 | 48.062 | 129 | 56 | 3 | 7 | 135 | 1 | 118 | 1.59e-31 | 110 |
Msa1090990 | MtrunA17_Chr8g0386111 | 41.406 | 128 | 59 | 3 | 24 | 144 | 5 | 123 | 4.59e-26 | 96.7 |
Msa1090990 | MtrunA17_Chr8g0386131 | 54.430 | 79 | 32 | 1 | 70 | 144 | 49 | 127 | 3.37e-24 | 92.4 |
Msa1090990 | MtrunA17_Chr8g0386121 | 54.688 | 64 | 29 | 0 | 71 | 134 | 47 | 110 | 7.28e-21 | 82.4 |
Msa1090990 | MtrunA17_Chr4g0036141 | 51.562 | 64 | 31 | 0 | 70 | 133 | 37 | 100 | 1.58e-17 | 74.3 |
Msa1090990 | MtrunA17_Chr3g0127561 | 43.373 | 83 | 45 | 1 | 56 | 136 | 19 | 101 | 3.78e-17 | 72.8 |
Msa1090990 | MtrunA17_Chr4g0070071 | 46.970 | 66 | 35 | 0 | 70 | 135 | 69 | 134 | 8.02e-17 | 73.2 |
Msa1090990 | MtrunA17_Chr2g0311341 | 42.391 | 92 | 40 | 1 | 39 | 130 | 40 | 118 | 1.13e-16 | 72.4 |
Msa1090990 | MtrunA17_Chr2g0301531 | 42.254 | 71 | 41 | 0 | 70 | 140 | 76 | 146 | 1.67e-16 | 72.4 |
Msa1090990 | MtrunA17_Chr3g0139171 | 35.714 | 140 | 73 | 4 | 15 | 145 | 15 | 146 | 2.06e-16 | 72.4 |
Msa1090990 | MtrunA17_Chr8g0358871 | 50.769 | 65 | 32 | 0 | 66 | 130 | 31 | 95 | 6.23e-16 | 69.7 |
Msa1090990 | MtrunA17_Chr3g0121801 | 41.667 | 84 | 44 | 2 | 46 | 128 | 5 | 84 | 9.39e-16 | 68.6 |
Msa1090990 | MtrunA17_Chr7g0266581 | 41.667 | 72 | 38 | 1 | 73 | 144 | 53 | 120 | 1.76e-15 | 68.9 |
Msa1090990 | MtrunA17_Chr1g0156341 | 39.744 | 78 | 47 | 0 | 64 | 141 | 31 | 108 | 1.92e-15 | 69.3 |
Msa1090990 | MtrunA17_Chr3g0145401 | 40.000 | 95 | 51 | 3 | 37 | 129 | 15 | 105 | 4.06e-15 | 67.4 |
Msa1090990 | MtrunA17_Chr1g0178451 | 41.096 | 73 | 43 | 0 | 62 | 134 | 41 | 113 | 7.44e-15 | 67.4 |
Msa1090990 | MtrunA17_Chr7g0276101 | 43.478 | 69 | 37 | 1 | 70 | 136 | 23 | 91 | 2.51e-14 | 65.1 |
Msa1090990 | MtrunA17_Chr4g0000251 | 36.620 | 71 | 45 | 0 | 69 | 139 | 69 | 139 | 3.48e-14 | 66.2 |
Msa1090990 | MtrunA17_Chr7g0266571 | 43.548 | 62 | 35 | 0 | 73 | 134 | 53 | 114 | 7.29e-14 | 64.7 |
Msa1090990 | MtrunA17_Chr4g0036711 | 43.056 | 72 | 40 | 1 | 65 | 135 | 10 | 81 | 7.69e-14 | 63.2 |
Msa1090990 | MtrunA17_Chr4g0036561 | 39.474 | 76 | 45 | 1 | 55 | 129 | 5 | 80 | 1.40e-13 | 62.8 |
Msa1090990 | MtrunA17_Chr3g0121721 | 40.000 | 85 | 46 | 2 | 46 | 129 | 5 | 85 | 1.47e-13 | 62.8 |
Msa1090990 | MtrunA17_Chr3g0121731 | 37.647 | 85 | 48 | 2 | 46 | 129 | 5 | 85 | 1.84e-13 | 62.8 |
Msa1090990 | MtrunA17_Chr3g0121701 | 37.647 | 85 | 48 | 2 | 46 | 129 | 5 | 85 | 1.92e-13 | 62.8 |
Msa1090990 | MtrunA17_Chr1g0147571 | 40.909 | 66 | 39 | 0 | 70 | 135 | 104 | 169 | 3.21e-13 | 64.7 |
Msa1090990 | MtrunA17_Chr4g0036181 | 43.056 | 72 | 40 | 1 | 56 | 126 | 69 | 140 | 3.76e-13 | 63.2 |
Msa1090990 | MtrunA17_Chr3g0130911 | 40.000 | 85 | 42 | 2 | 62 | 138 | 2 | 85 | 4.74e-13 | 62.0 |
Msa1090990 | MtrunA17_Chr8g0358971 | 47.541 | 61 | 31 | 1 | 70 | 129 | 25 | 85 | 5.06e-13 | 61.6 |
Msa1090990 | MtrunA17_Chr1g0179511 | 39.062 | 64 | 39 | 0 | 70 | 133 | 19 | 82 | 5.24e-13 | 62.4 |
Msa1090990 | MtrunA17_Chr4g0036531 | 42.424 | 66 | 37 | 1 | 70 | 134 | 25 | 90 | 6.81e-13 | 61.2 |
Msa1090990 | MtrunA17_Chr8g0358981 | 37.647 | 85 | 48 | 2 | 46 | 129 | 5 | 85 | 6.96e-13 | 61.2 |
Msa1090990 | MtrunA17_Chr8g0359011 | 50.000 | 58 | 28 | 1 | 70 | 126 | 3 | 60 | 7.03e-13 | 60.5 |
Msa1090990 | MtrunA17_Chr8g0346181 | 41.975 | 81 | 41 | 3 | 68 | 142 | 25 | 105 | 8.01e-13 | 61.6 |
Msa1090990 | MtrunA17_Chr2g0281291 | 50.769 | 65 | 29 | 2 | 68 | 129 | 22 | 86 | 9.50e-13 | 60.8 |
Msa1090990 | MtrunA17_Chr7g0264401 | 47.541 | 61 | 32 | 0 | 70 | 130 | 40 | 100 | 9.94e-13 | 61.2 |
Msa1090990 | MtrunA17_Chr1g0199531 | 46.032 | 63 | 34 | 0 | 68 | 130 | 48 | 110 | 1.18e-12 | 61.2 |
Msa1090990 | MtrunA17_Chr4g0036751 | 38.158 | 76 | 46 | 1 | 55 | 129 | 5 | 80 | 1.67e-12 | 60.1 |
Msa1090990 | MtrunA17_Chr4g0036461 | 45.902 | 61 | 32 | 1 | 70 | 129 | 25 | 85 | 1.95e-12 | 60.1 |
Msa1090990 | MtrunA17_Chr4g0036271 | 42.424 | 66 | 37 | 1 | 70 | 134 | 23 | 88 | 2.23e-12 | 59.7 |
Msa1090990 | MtrunA17_Chr4g0036611 | 47.541 | 61 | 31 | 1 | 70 | 129 | 25 | 85 | 2.31e-12 | 59.7 |
Msa1090990 | MtrunA17_Chr4g0036211 | 36.047 | 86 | 54 | 1 | 56 | 140 | 150 | 235 | 2.62e-12 | 62.8 |
Msa1090990 | MtrunA17_Chr4g0036201 | 37.500 | 80 | 49 | 1 | 56 | 134 | 12 | 91 | 4.64e-12 | 58.9 |
Msa1090990 | MtrunA17_Chr4g0036841 | 48.276 | 58 | 29 | 1 | 70 | 126 | 35 | 92 | 5.36e-12 | 58.9 |
Msa1090990 | MtrunA17_Chr3g0121761 | 49.153 | 59 | 27 | 2 | 70 | 126 | 25 | 82 | 5.40e-12 | 58.9 |
Msa1090990 | MtrunA17_Chr4g0036831 | 38.667 | 75 | 45 | 1 | 56 | 129 | 12 | 86 | 5.62e-12 | 58.9 |
Msa1090990 | MtrunA17_Chr4g0036811 | 40.909 | 66 | 38 | 1 | 70 | 134 | 26 | 91 | 6.52e-12 | 58.5 |
Msa1090990 | MtrunA17_Chr4g0011821 | 37.662 | 77 | 45 | 1 | 70 | 143 | 79 | 155 | 7.09e-12 | 60.1 |
Msa1090990 | MtrunA17_Chr7g0264551 | 38.889 | 72 | 42 | 1 | 61 | 130 | 43 | 114 | 1.01e-11 | 58.9 |
Msa1090990 | MtrunA17_Chr3g0139711 | 36.471 | 85 | 50 | 2 | 46 | 129 | 5 | 86 | 1.31e-11 | 57.8 |
Msa1090990 | MtrunA17_Chr4g0036571 | 36.559 | 93 | 54 | 3 | 41 | 129 | 29 | 120 | 1.32e-11 | 58.5 |
Msa1090990 | MtrunA17_Chr3g0121781 | 47.458 | 59 | 28 | 2 | 70 | 126 | 25 | 82 | 1.61e-11 | 57.8 |
Msa1090990 | MtrunA17_Chr8g0358991 | 47.458 | 59 | 28 | 2 | 70 | 126 | 25 | 82 | 1.63e-11 | 57.8 |
Msa1090990 | MtrunA17_Chr3g0139701 | 37.647 | 85 | 48 | 2 | 46 | 129 | 63 | 143 | 1.88e-11 | 58.9 |
Msa1090990 | MtrunA17_Chr4g0036801 | 45.902 | 61 | 32 | 1 | 70 | 129 | 26 | 86 | 2.26e-11 | 57.4 |
Msa1090990 | MtrunA17_Chr4g0036221 | 47.541 | 61 | 30 | 2 | 70 | 129 | 26 | 85 | 2.36e-11 | 57.0 |
Msa1090990 | MtrunA17_Chr1g0181011 | 32.479 | 117 | 57 | 2 | 14 | 130 | 55 | 149 | 2.63e-11 | 58.9 |
Msa1090990 | MtrunA17_Chr4g0036491 | 45.902 | 61 | 32 | 1 | 70 | 129 | 25 | 85 | 2.72e-11 | 57.0 |
Msa1090990 | MtrunA17_Chr3g0121741 | 45.763 | 59 | 29 | 2 | 70 | 126 | 25 | 82 | 4.13e-11 | 56.6 |
Msa1090990 | MtrunA17_Chr4g0036191 | 48.333 | 60 | 28 | 2 | 71 | 129 | 27 | 84 | 4.67e-11 | 56.2 |
Msa1090990 | MtrunA17_Chr4g0036581 | 45.763 | 59 | 31 | 1 | 72 | 129 | 27 | 85 | 5.26e-11 | 56.2 |
Msa1090990 | MtrunA17_Chr4g0036541 | 36.842 | 76 | 47 | 1 | 55 | 129 | 5 | 80 | 5.36e-11 | 56.2 |
Msa1090990 | MtrunA17_Chr3g0121711 | 45.763 | 59 | 29 | 2 | 70 | 126 | 25 | 82 | 5.38e-11 | 56.2 |
Msa1090990 | MtrunA17_Chr4g0036431 | 37.975 | 79 | 43 | 2 | 57 | 129 | 7 | 85 | 5.97e-11 | 56.2 |
Msa1090990 | MtrunA17_Chr4g0036401 | 33.721 | 86 | 51 | 2 | 55 | 134 | 5 | 90 | 6.71e-11 | 55.8 |
Msa1090990 | MtrunA17_Chr8g0385011 | 36.471 | 85 | 48 | 2 | 53 | 137 | 5 | 83 | 7.21e-11 | 56.2 |
Msa1090990 | MtrunA17_Chr4g0036691 | 36.842 | 76 | 47 | 1 | 55 | 129 | 5 | 80 | 7.56e-11 | 55.5 |
Msa1090990 | MtrunA17_Chr4g0036761 | 44.262 | 61 | 33 | 1 | 70 | 129 | 23 | 83 | 7.66e-11 | 55.8 |
Msa1090990 | MtrunA17_Chr4g0036821 | 39.394 | 66 | 39 | 1 | 70 | 134 | 26 | 91 | 7.80e-11 | 55.8 |
Msa1090990 | MtrunA17_Chr4g0036651 | 34.524 | 84 | 49 | 2 | 57 | 134 | 7 | 90 | 8.56e-11 | 55.8 |
Msa1090990 | MtrunA17_Chr4g0036501 | 42.623 | 61 | 34 | 1 | 70 | 129 | 21 | 81 | 9.67e-11 | 55.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1090990 | AT5G50760.1 | 43.966 | 116 | 62 | 2 | 19 | 133 | 5 | 118 | 5.83e-23 | 90.1 |
Msa1090990 | AT1G56150.1 | 46.479 | 71 | 38 | 0 | 60 | 130 | 28 | 98 | 9.55e-18 | 74.7 |
Msa1090990 | AT5G20810.1 | 48.485 | 66 | 34 | 0 | 70 | 135 | 79 | 144 | 1.93e-17 | 75.5 |
Msa1090990 | AT5G20810.2 | 48.485 | 66 | 34 | 0 | 70 | 135 | 79 | 144 | 2.71e-17 | 75.5 |
Msa1090990 | AT3G43120.1 | 46.970 | 66 | 35 | 0 | 70 | 135 | 79 | 144 | 5.51e-17 | 73.9 |
Msa1090990 | AT3G12830.1 | 40.206 | 97 | 54 | 1 | 38 | 130 | 14 | 110 | 6.50e-16 | 70.5 |
Msa1090990 | AT1G16510.1 | 46.970 | 66 | 35 | 0 | 65 | 130 | 49 | 114 | 1.56e-15 | 69.7 |
Msa1090990 | AT2G46690.1 | 44.444 | 72 | 37 | 1 | 68 | 136 | 22 | 93 | 2.18e-15 | 68.9 |
Msa1090990 | AT3G61900.1 | 40.230 | 87 | 40 | 2 | 68 | 142 | 28 | 114 | 2.70e-15 | 68.9 |
Msa1090990 | AT4G00880.1 | 42.169 | 83 | 44 | 2 | 56 | 136 | 16 | 96 | 1.25e-14 | 67.0 |
Msa1090990 | AT4G34750.2 | 42.623 | 61 | 35 | 0 | 70 | 130 | 37 | 97 | 1.96e-14 | 67.0 |
Msa1090990 | AT4G34750.1 | 42.623 | 61 | 35 | 0 | 70 | 130 | 37 | 97 | 1.96e-14 | 67.0 |
Msa1090990 | AT1G75590.1 | 47.368 | 57 | 30 | 0 | 70 | 126 | 42 | 98 | 1.11e-13 | 65.1 |
Msa1090990 | AT5G10990.1 | 36.735 | 98 | 58 | 2 | 31 | 126 | 2 | 97 | 1.20e-13 | 65.1 |
Msa1090990 | AT1G79130.1 | 35.185 | 108 | 57 | 2 | 26 | 133 | 17 | 111 | 1.77e-13 | 64.3 |
Msa1090990 | AT5G53590.1 | 41.096 | 73 | 38 | 1 | 70 | 137 | 46 | 118 | 2.49e-13 | 63.9 |
Msa1090990 | AT2G24400.1 | 41.379 | 87 | 49 | 1 | 52 | 136 | 46 | 132 | 1.70e-12 | 62.4 |
Msa1090990 | AT1G19840.1 | 42.623 | 61 | 35 | 0 | 70 | 130 | 41 | 101 | 2.20e-12 | 61.6 |
Msa1090990 | AT4G31320.1 | 41.250 | 80 | 42 | 2 | 71 | 145 | 81 | 160 | 3.78e-12 | 62.0 |
Msa1090990 | AT3G20220.1 | 41.270 | 63 | 36 | 1 | 70 | 131 | 47 | 109 | 1.03e-11 | 59.3 |
Msa1090990 | AT3G60690.1 | 38.542 | 96 | 52 | 3 | 58 | 148 | 74 | 167 | 1.72e-11 | 59.7 |
Msa1090990 | AT2G37030.1 | 42.623 | 61 | 35 | 0 | 70 | 130 | 49 | 109 | 1.73e-11 | 58.5 |
Msa1090990 | AT5G66260.1 | 37.879 | 66 | 40 | 1 | 70 | 135 | 34 | 98 | 4.26e-11 | 57.0 |
Msa1090990 | AT3G51200.1 | 40.323 | 62 | 37 | 0 | 69 | 130 | 39 | 100 | 6.59e-11 | 56.6 |
Find 41 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCATCTTCTTAGCCCTTCC+AGG | 0.273002 | 7_3:-6089143 | Msa1090990:CDS |
CCTTCCCAAGGTTGTACTTT+TGG | 0.273068 | 7_3:-6089183 | Msa1090990:CDS |
ATCACAAACCTTTGCATTTG+AGG | 0.328411 | 7_3:+6089354 | None:intergenic |
GGAAAAGGGAACAAGAAAAT+AGG | 0.347522 | 7_3:-6089567 | Msa1090990:CDS |
GAAGAAGCTGAATCAGAATA+TGG | 0.364921 | 7_3:-6089288 | Msa1090990:CDS |
TTACAAAGTGTTGATGGAAA+TGG | 0.371199 | 7_3:-6089217 | Msa1090990:CDS |
TTATAGCTGCCAAGGACCTT+TGG | 0.404368 | 7_3:-6089265 | Msa1090990:CDS |
AAGAACATGAAGCAAGGAAA+AGG | 0.428717 | 7_3:-6089582 | Msa1090990:CDS |
GATTTGCTCCTTCTTGTCGT+TGG | 0.461730 | 7_3:+6089456 | None:intergenic |
GTTGTTTAAAACAATCATCC+TGG | 0.485523 | 7_3:+6089125 | None:intergenic |
AGAAAATAGACGAAAGAAAG+TGG | 0.505985 | 7_3:-6089409 | Msa1090990:CDS |
TAAAAGACATCAACATTACA+AGG | 0.510903 | 7_3:+6089237 | None:intergenic |
AGAACATGAAGCAAGGAAAA+GGG | 0.512113 | 7_3:-6089581 | Msa1090990:CDS |
TGCAAGTCCATAGGAGGAGG+AGG | 0.512745 | 7_3:-6089519 | Msa1090990:CDS |
ATCATGGCCTAGTCTTCCGC+GGG | 0.516084 | 7_3:-6089436 | Msa1090990:CDS |
AAGGAAGAGCCAAAGGTCCT+TGG | 0.517712 | 7_3:+6089256 | None:intergenic |
CGACAAGAAGGAGCAAATCA+TGG | 0.519386 | 7_3:-6089452 | Msa1090990:CDS |
TAGACGAAAGAAAGTGGCCC+CGG | 0.522285 | 7_3:-6089403 | Msa1090990:CDS |
ACACCGAAAAGCATCCCTCC+GGG | 0.524201 | 7_3:+6089385 | None:intergenic |
TTTAAAACAATCATCCTGGA+AGG | 0.525683 | 7_3:+6089129 | None:intergenic |
TCAAGCAACATCTTGAACAA+AGG | 0.532123 | 7_3:+6089309 | None:intergenic |
ACGACCAAAAGTACAACCTT+GGG | 0.533998 | 7_3:+6089179 | None:intergenic |
CGAAAGAAAGTGGCCCCGGA+GGG | 0.535522 | 7_3:-6089399 | Msa1090990:CDS |
AACGACCAAAAGTACAACCT+TGG | 0.538821 | 7_3:+6089178 | None:intergenic |
AGATGCAAGTCCATAGGAGG+AGG | 0.541895 | 7_3:-6089522 | Msa1090990:CDS |
TACACCGAAAAGCATCCCTC+CGG | 0.548704 | 7_3:+6089384 | None:intergenic |
AAGTCCATAGGAGGAGGAGG+AGG | 0.549753 | 7_3:-6089516 | Msa1090990:CDS |
GAATATGGTTATAGCTGCCA+AGG | 0.552741 | 7_3:-6089273 | Msa1090990:CDS |
CAGTGATTCCAACGACAAGA+AGG | 0.563887 | 7_3:-6089464 | Msa1090990:CDS |
TTAAAACAATCATCCTGGAA+GGG | 0.592351 | 7_3:+6089130 | None:intergenic |
TGGGAGAGATGCAAGTCCAT+AGG | 0.597578 | 7_3:-6089528 | Msa1090990:CDS |
AATCATGGCCTAGTCTTCCG+CGG | 0.600149 | 7_3:-6089437 | Msa1090990:CDS |
GAGAGATGCAAGTCCATAGG+AGG | 0.601664 | 7_3:-6089525 | Msa1090990:CDS |
GATAATGAAGCTCCTTCCCA+AGG | 0.617597 | 7_3:-6089195 | Msa1090990:CDS |
ACATTACAAGGAAGAGCCAA+AGG | 0.626356 | 7_3:+6089249 | None:intergenic |
ACGTTGGACCTCAAATGCAA+AGG | 0.634178 | 7_3:-6089362 | Msa1090990:CDS |
ATTGGCAAGAACATGAAGCA+AGG | 0.634830 | 7_3:-6089588 | Msa1090990:CDS |
ACGAAAGAAAGTGGCCCCGG+AGG | 0.651502 | 7_3:-6089400 | Msa1090990:CDS |
CCAAAAGTACAACCTTGGGA+AGG | 0.674764 | 7_3:+6089183 | None:intergenic |
CACCGAAAAGCATCCCTCCG+GGG | 0.706013 | 7_3:+6089386 | None:intergenic |
TCATGGCCTAGTCTTCCGCG+GGG | 0.775767 | 7_3:-6089435 | Msa1090990:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TAAAAGACATCAACATTACA+AGG | + | chr7_3:6089479-6089498 | None:intergenic | 25.0% |
AGAAAATAGACGAAAGAAAG+TGG | - | chr7_3:6089304-6089323 | Msa1090990:CDS | 30.0% | |
!!! | TGTCTTTTACAAAGTGTTGA+TGG | - | chr7_3:6089490-6089509 | Msa1090990:CDS | 30.0% |
!! | TTACAAAGTGTTGATGGAAA+TGG | - | chr7_3:6089496-6089515 | Msa1090990:CDS | 30.0% |
TTAAAACAATCATCCTGGAA+GGG | + | chr7_3:6089586-6089605 | None:intergenic | 30.0% | |
! | TTTAAAACAATCATCCTGGA+AGG | + | chr7_3:6089587-6089606 | None:intergenic | 30.0% |
! | GTTGTTTAAAACAATCATCC+TGG | + | chr7_3:6089591-6089610 | None:intergenic | 30.0% |
AAGAACATGAAGCAAGGAAA+AGG | - | chr7_3:6089131-6089150 | Msa1090990:CDS | 35.0% | |
AGAACATGAAGCAAGGAAAA+GGG | - | chr7_3:6089132-6089151 | Msa1090990:CDS | 35.0% | |
GGAAAAGGGAACAAGAAAAT+AGG | - | chr7_3:6089146-6089165 | Msa1090990:CDS | 35.0% | |
ATCACAAACCTTTGCATTTG+AGG | + | chr7_3:6089362-6089381 | None:intergenic | 35.0% | |
TCAAGCAACATCTTGAACAA+AGG | + | chr7_3:6089407-6089426 | None:intergenic | 35.0% | |
GAAGAAGCTGAATCAGAATA+TGG | - | chr7_3:6089425-6089444 | Msa1090990:CDS | 35.0% | |
ATTGGCAAGAACATGAAGCA+AGG | - | chr7_3:6089125-6089144 | Msa1090990:CDS | 40.0% | |
GAATATGGTTATAGCTGCCA+AGG | - | chr7_3:6089440-6089459 | Msa1090990:CDS | 40.0% | |
ACATTACAAGGAAGAGCCAA+AGG | + | chr7_3:6089467-6089486 | None:intergenic | 40.0% | |
! | ACGACCAAAAGTACAACCTT+GGG | + | chr7_3:6089537-6089556 | None:intergenic | 40.0% |
! | AACGACCAAAAGTACAACCT+TGG | + | chr7_3:6089538-6089557 | None:intergenic | 40.0% |
TAGGCCTCATCACAAAAACG+TGG | - | chr7_3:6089165-6089184 | Msa1090990:CDS | 45.0% | |
AGGCCTCATCACAAAAACGT+GGG | - | chr7_3:6089166-6089185 | Msa1090990:CDS | 45.0% | |
! | TCTCCCACGTTTTTGTGATG+AGG | + | chr7_3:6089172-6089191 | None:intergenic | 45.0% |
CAGTGATTCCAACGACAAGA+AGG | - | chr7_3:6089249-6089268 | Msa1090990:CDS | 45.0% | |
! | GATTTGCTCCTTCTTGTCGT+TGG | + | chr7_3:6089260-6089279 | None:intergenic | 45.0% |
CGACAAGAAGGAGCAAATCA+TGG | - | chr7_3:6089261-6089280 | Msa1090990:CDS | 45.0% | |
ACGTTGGACCTCAAATGCAA+AGG | - | chr7_3:6089351-6089370 | Msa1090990:CDS | 45.0% | |
TTATAGCTGCCAAGGACCTT+TGG | - | chr7_3:6089448-6089467 | Msa1090990:CDS | 45.0% | |
GATAATGAAGCTCCTTCCCA+AGG | - | chr7_3:6089518-6089537 | Msa1090990:CDS | 45.0% | |
! | CCAAAAGTACAACCTTGGGA+AGG | + | chr7_3:6089533-6089552 | None:intergenic | 45.0% |
! | CCTTCCCAAGGTTGTACTTT+TGG | - | chr7_3:6089530-6089549 | Msa1090990:CDS | 45.0% |
ATCATCTTCTTAGCCCTTCC+AGG | - | chr7_3:6089570-6089589 | Msa1090990:CDS | 45.0% | |
TGGGAGAGATGCAAGTCCAT+AGG | - | chr7_3:6089185-6089204 | Msa1090990:CDS | 50.0% | |
GAGAGATGCAAGTCCATAGG+AGG | - | chr7_3:6089188-6089207 | Msa1090990:CDS | 50.0% | |
AGATGCAAGTCCATAGGAGG+AGG | - | chr7_3:6089191-6089210 | Msa1090990:CDS | 50.0% | |
! | AATCATGGCCTAGTCTTCCG+CGG | - | chr7_3:6089276-6089295 | Msa1090990:CDS | 50.0% |
TAGACGAAAGAAAGTGGCCC+CGG | - | chr7_3:6089310-6089329 | Msa1090990:CDS | 50.0% | |
!! | TACACCGAAAAGCATCCCTC+CGG | + | chr7_3:6089332-6089351 | None:intergenic | 50.0% |
!! | GGATGCTTTTCGGTGTACGT+TGG | - | chr7_3:6089335-6089354 | Msa1090990:CDS | 50.0% |
AAGGAAGAGCCAAAGGTCCT+TGG | + | chr7_3:6089460-6089479 | None:intergenic | 50.0% | |
TGCAAGTCCATAGGAGGAGG+AGG | - | chr7_3:6089194-6089213 | Msa1090990:CDS | 55.0% | |
AAGTCCATAGGAGGAGGAGG+AGG | - | chr7_3:6089197-6089216 | Msa1090990:CDS | 55.0% | |
! | ATCATGGCCTAGTCTTCCGC+GGG | - | chr7_3:6089277-6089296 | Msa1090990:CDS | 55.0% |
! | CGTCTATTTTCTTCGCCCCG+CGG | + | chr7_3:6089296-6089315 | None:intergenic | 55.0% |
!! | ACACCGAAAAGCATCCCTCC+GGG | + | chr7_3:6089331-6089350 | None:intergenic | 55.0% |
TCCATAGGAGGAGGAGGAGG+AGG | - | chr7_3:6089200-6089219 | Msa1090990:CDS | 60.0% | |
TCCTCCTCCTCCTCCTCCTA+TGG | + | chr7_3:6089204-6089223 | None:intergenic | 60.0% | |
! | TCATGGCCTAGTCTTCCGCG+GGG | - | chr7_3:6089278-6089297 | Msa1090990:CDS | 60.0% |
ACGAAAGAAAGTGGCCCCGG+AGG | - | chr7_3:6089313-6089332 | Msa1090990:CDS | 60.0% | |
CGAAAGAAAGTGGCCCCGGA+GGG | - | chr7_3:6089314-6089333 | Msa1090990:CDS | 60.0% | |
!! | CACCGAAAAGCATCCCTCCG+GGG | + | chr7_3:6089330-6089349 | None:intergenic | 60.0% |
TCTTCGCCCCGCGGAAGACT+AGG | + | chr7_3:6089287-6089306 | None:intergenic | 65.0% | |
! | GGCCCCGGAGGGATGCTTTT+CGG | - | chr7_3:6089325-6089344 | Msa1090990:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 6089119 | 6089616 | 6089119 | ID=Msa1090990;Name=Msa1090990 |
chr7_3 | mRNA | 6089119 | 6089616 | 6089119 | ID=Msa1090990-mRNA-1;Parent=Msa1090990;Name=Msa1090990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|165 |
chr7_3 | exon | 6089119 | 6089616 | 6089119 | ID=Msa1090990-mRNA-1:exon:1838;Parent=Msa1090990-mRNA-1 |
chr7_3 | CDS | 6089119 | 6089616 | 6089119 | ID=Msa1090990-mRNA-1:cds;Parent=Msa1090990-mRNA-1 |
Gene Sequence |
Protein sequence |