AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0219060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219060 MtrunA17_Chr2g0321431 97.787 497 8 2 1 494 1 497 0.0 1001
Msa0219060 MtrunA17_Chr4g0026401 65.945 508 140 8 1 494 1 489 0.0 657
Msa0219060 MtrunA17_Chr8g0353501 62.847 288 97 3 189 466 179 466 6.06e-125 372
Msa0219060 MtrunA17_Chr1g0174701 44.776 469 174 8 36 466 85 506 3.86e-124 372
Msa0219060 MtrunA17_Chr7g0256211 59.603 302 111 3 175 466 152 452 1.82e-122 365
Msa0219060 MtrunA17_Chr7g0258321 43.067 476 185 12 21 466 44 463 4.27e-120 360
Msa0219060 MtrunA17_Chr3g0124601 54.795 292 120 4 184 466 73 361 2.58e-109 328
Msa0219060 MtrunA17_Chr5g0422771 54.167 288 122 2 189 466 177 464 8.44e-104 318
Msa0219060 MtrunA17_Chr1g0210151 47.573 309 147 3 169 466 36 340 1.36e-99 303
Msa0219060 MtrunA17_Chr5g0424861 49.679 312 145 5 163 463 37 347 1.15e-91 283
Msa0219060 MtrunA17_Chr8g0382861 51.228 285 127 4 191 466 75 356 1.88e-90 280
Msa0219060 MtrunA17_Chr3g0115371 50.865 289 133 3 191 470 65 353 8.46e-90 278
Msa0219060 MtrunA17_Chr5g0424851 45.249 221 118 1 246 463 2 222 1.87e-57 196
Msa0219060 MtrunA17_Chr5g0424851 42.157 204 116 1 253 454 223 426 2.96e-50 177
Msa0219060 MtrunA17_Chr3g0093451 45.699 186 86 4 169 342 27 209 2.39e-54 181
Msa0219060 MtrunA17_Chr1g0196951 33.155 187 104 5 267 448 59 229 9.13e-23 97.1
Msa0219060 MtrunA17_Chr8g0384821 27.615 239 124 6 258 453 15 247 2.51e-16 79.3
Msa0219060 MtrunA17_Chr7g0242651 24.885 217 143 3 256 456 7 219 1.20e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219060 AT1G08320.1 59.761 502 173 9 1 494 1 481 0.0 583
Msa0219060 AT1G08320.4 59.761 502 173 9 1 494 1 481 0.0 583
Msa0219060 AT1G08320.3 59.761 502 173 9 1 494 1 481 0.0 583
Msa0219060 AT1G08320.2 68.622 341 106 1 154 494 18 357 1.61e-176 500
Msa0219060 AT1G08320.5 68.622 341 106 1 154 494 18 357 1.61e-176 500
Msa0219060 AT5G06839.3 46.072 471 182 11 35 467 23 459 3.59e-121 363
Msa0219060 AT5G06839.1 58.228 316 108 4 176 467 101 416 6.66e-118 353
Msa0219060 AT3G12250.6 55.183 328 128 4 151 466 10 330 2.78e-117 348
Msa0219060 AT3G12250.2 55.183 328 128 4 151 466 10 330 2.78e-117 348
Msa0219060 AT3G12250.7 55.183 328 128 4 151 466 10 330 2.78e-117 348
Msa0219060 AT3G12250.1 55.183 328 128 4 151 466 10 330 2.78e-117 348
Msa0219060 AT5G06839.2 58.044 317 108 5 176 467 101 417 1.87e-116 349
Msa0219060 AT3G12250.5 58.086 303 109 4 179 466 4 303 4.76e-116 344
Msa0219060 AT3G12250.3 58.086 303 109 4 179 466 25 324 7.01e-116 344
Msa0219060 AT5G06950.2 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0219060 AT5G06950.4 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0219060 AT5G06950.1 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0219060 AT5G06950.5 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0219060 AT5G06950.3 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0219060 AT3G12250.4 58.000 300 114 3 179 466 56 355 1.35e-114 342
Msa0219060 AT5G06960.2 59.028 288 109 2 188 466 43 330 2.94e-113 338
Msa0219060 AT5G06960.1 59.028 288 109 2 188 466 43 330 2.94e-113 338
Msa0219060 AT5G06960.3 59.028 288 109 2 188 466 23 310 7.30e-113 336
Msa0219060 AT1G22070.1 56.055 289 118 3 188 467 95 383 8.10e-103 313
Msa0219060 AT1G77920.1 49.112 338 141 5 132 466 57 366 1.18e-102 312
Msa0219060 AT5G10030.5 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0219060 AT5G10030.3 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0219060 AT5G10030.1 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0219060 AT5G10030.4 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0219060 AT5G10030.2 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0219060 AT1G68640.1 55.102 294 117 5 186 466 161 452 1.98e-99 306
Msa0219060 AT5G65210.6 51.536 293 133 3 181 466 6 296 7.81e-96 292
Msa0219060 AT5G65210.5 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0219060 AT5G65210.7 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0219060 AT5G65210.3 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0219060 AT5G65210.1 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0219060 AT5G65210.2 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0219060 AT5G65210.4 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0219060 AT1G58330.1 26.244 221 148 4 251 456 3 223 2.89e-14 72.4

Find 103 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGGAAATGTTCCCTTCT+TGG 0.211576 2_1:+66532545 Msa0219060:CDS
TTCGAGCTCTTAGTTCTCTT+TGG 0.221414 2_1:+66538163 Msa0219060:CDS
AATCAAGTTCTCCTATTCTT+TGG 0.233116 2_1:-66531851 None:intergenic
GAAAATGTCAGTTGTTATCT+AGG 0.286466 2_1:+66538915 Msa0219060:three_prime_UTR
CTGCTAGTGGCTCCAATTGC+TGG 0.291746 2_1:-66536742 None:intergenic
AAGCTGAACGTTGCTTCCTT+TGG 0.305878 2_1:+66535674 Msa0219060:CDS
TCAACTCATCATGTCCCTTA+TGG 0.310663 2_1:+66531891 Msa0219060:CDS
ACTAGCAGAGCAGCAGATAA+TGG 0.313627 2_1:+66536757 Msa0219060:CDS
GAAAAGTCGTCTAAGGAAAA+AGG 0.321473 2_1:+66534009 Msa0219060:CDS
ATCAGATCATAATAATAATA+TGG 0.322421 2_1:+66532918 Msa0219060:CDS
AATTGAAAAGGGTATGTTCA+TGG 0.336673 2_1:+66534294 Msa0219060:intron
GTCCTACAAGTGGTTCTTGT+TGG 0.337979 2_1:+66538883 Msa0219060:three_prime_UTR
CTTGTTATTGGAGAATATTA+TGG 0.340074 2_1:+66538135 Msa0219060:CDS
CACATTTACAATAAACATAA+AGG 0.342026 2_1:-66538982 None:intergenic
GCAATGTTTGACATGGAATA+TGG 0.352960 2_1:+66535463 Msa0219060:CDS
TCTCTTGTTGACACCATTGC+TGG 0.353849 2_1:+66536854 Msa0219060:CDS
TCGAGCTCTTAGTTCTCTTT+GGG 0.354428 2_1:+66538164 Msa0219060:CDS
CTAGCAGAGCAGCAGATAAT+GGG 0.357751 2_1:+66536758 Msa0219060:CDS
TAGATTAAAGCTTACACAAT+TGG 0.368639 2_1:+66534156 Msa0219060:CDS
AAGGGTGATTCTTGCTCAAA+AGG 0.370182 2_1:-66532871 None:intergenic
TTACTACTGTTGAGGTTTGA+TGG 0.373913 2_1:-66532579 None:intergenic
TCCTACAAGTGGTTCTTGTT+GGG 0.375279 2_1:+66538884 Msa0219060:three_prime_UTR
GCTGGAGGACCCCTTGTTGA+TGG 0.376451 2_1:+66536872 Msa0219060:CDS
TTTGCATGTCTGTGGTTGTT+TGG 0.382914 2_1:-66538806 None:intergenic
TTCCAGTGTAGCAGCAGGTC+TGG 0.387739 2_1:-66532530 None:intergenic
TTTGTTAGGAATGAAGAATC+TGG 0.392918 2_1:+66532048 Msa0219060:intron
TATTTCTCTTTAGCTAAAGT+TGG 0.401155 2_1:-66539036 None:intergenic
TGAGACGTTTAGCACAAAAC+AGG 0.401597 2_1:+66533975 Msa0219060:CDS
ATGGATTGGAGTGGAGGTGT+TGG 0.411382 2_1:+66534313 Msa0219060:CDS
CGTTGCTTCCTTTGGATTGG+TGG 0.418885 2_1:+66535682 Msa0219060:CDS
TTCTTAACTCCGTTAATAAA+CGG 0.419059 2_1:-66535507 None:intergenic
CTGCAAGGAAAAGTCGTCTA+AGG 0.422741 2_1:+66534002 Msa0219060:CDS
GGCAAGCTTGCCAATCTTGA+AGG 0.422961 2_1:+66536920 Msa0219060:CDS
AGAAGACAACCGTTTATTAA+CGG 0.423518 2_1:+66535498 Msa0219060:CDS
TCCCTTATGGAATTCATCAT+AGG 0.425244 2_1:+66531904 Msa0219060:CDS
ATCCAGACCTGCTGCTACAC+TGG 0.426810 2_1:+66532528 Msa0219060:CDS
TCAGATGTTGATCCAGCAAT+TGG 0.431974 2_1:+66536730 Msa0219060:intron
CAGGAAGGTGGTAACAAATC+AGG 0.441251 2_1:+66532805 Msa0219060:intron
TAATACATTAAACTTGATGA+AGG 0.448293 2_1:-66531936 None:intergenic
GAACGTTGCTTCCTTTGGAT+TGG 0.451843 2_1:+66535679 Msa0219060:CDS
GACGTGTTTCATCTTATCAA+TGG 0.455217 2_1:+66535637 Msa0219060:CDS
ATCCTATGATGAATTCCATA+AGG 0.459315 2_1:-66531906 None:intergenic
GTGTGAGTAATCGACATAAC+TGG 0.463505 2_1:-66538089 None:intergenic
GCGAAGAAAACCTTCAAGAT+TGG 0.465454 2_1:-66536930 None:intergenic
CAACAAATGGTTGTTGCCAT+AGG 0.467436 2_1:+66536899 Msa0219060:CDS
CAACAAGAGACTGTTGCAAC+TGG 0.468138 2_1:-66536841 None:intergenic
TAGACCCTCTGAAATTATCA+TGG 0.469132 2_1:+66535708 Msa0219060:CDS
AAGATTGGCAAGCTTGCCTA+TGG 0.469646 2_1:-66536915 None:intergenic
CAGCAGATAATGGGGATGTA+TGG 0.469706 2_1:+66536767 Msa0219060:CDS
AAAAGGGTATGTTCATGGAT+TGG 0.472621 2_1:+66534299 Msa0219060:intron
TGGAATCTCATTGGCCAAGA+AGG 0.473970 2_1:-66532559 None:intergenic
TCCTATGATGAATTCCATAA+GGG 0.488783 2_1:-66531905 None:intergenic
AGGGTGATTCTTGCTCAAAA+GGG 0.490521 2_1:-66532870 None:intergenic
ATGTTCATGGATTGGAGTGG+AGG 0.491384 2_1:+66534307 Msa0219060:CDS
TGTTGATGGTGTTCAACAAA+TGG 0.493901 2_1:+66536886 Msa0219060:CDS
GAGGTTTGATGGAATCTCAT+TGG 0.494784 2_1:-66532568 None:intergenic
GCCCAACAAGAACCACTTGT+AGG 0.495907 2_1:-66538885 None:intergenic
CATTCAAAGAGCACGCTCTC+AGG 0.496954 2_1:+66534186 Msa0219060:CDS
GATTGGAGTGGAGGTGTTGG+AGG 0.501212 2_1:+66534316 Msa0219060:CDS
ACTAACCATGATAATTTCAG+AGG 0.514912 2_1:-66535713 None:intergenic
ATAAACACCTTTGCATCAAG+TGG 0.519298 2_1:-66533861 None:intergenic
ATCAGCAGCAGCCAAAGAAA+AGG 0.524596 2_1:+66533035 Msa0219060:CDS
AACAACCACAGACATGCAAA+TGG 0.543202 2_1:+66538809 Msa0219060:CDS
CACAAAACAGGGAGGCTGCA+AGG 0.543811 2_1:+66533987 Msa0219060:CDS
AACATTTCCAGTGTAGCAGC+AGG 0.549096 2_1:-66532535 None:intergenic
ATTATCTGCTGCTCTGCTAG+TGG 0.553911 2_1:-66536755 None:intergenic
GTTGGAGGAAATATAAGCTC+TGG 0.554357 2_1:+66534331 Msa0219060:CDS
CTTGTTGACACCATTGCTGG+AGG 0.554730 2_1:+66536857 Msa0219060:CDS
AATTGAAGGCTGATAACTTG+AGG 0.558228 2_1:+66538052 Msa0219060:intron
TTATTAACGGAGTTAAGAAA+CGG 0.562286 2_1:+66535511 Msa0219060:CDS
GATCAAATATTTAGACTCAA+AGG 0.563784 2_1:+66535598 Msa0219060:CDS
GGAATCTCATTGGCCAAGAA+GGG 0.563800 2_1:-66532558 None:intergenic
AGATAAGCCACTTGATGCAA+AGG 0.567470 2_1:+66533854 Msa0219060:CDS
GTCTAAAACCACCAATCCAA+AGG 0.567699 2_1:-66535690 None:intergenic
AGAGAGTATTACTACTGTTG+AGG 0.572603 2_1:-66532587 None:intergenic
TTTGTGAAATGATTCTGAGA+AGG 0.574512 2_1:-66538837 None:intergenic
GCAGAGGAAGCTCTCTCACA+AGG 0.575222 2_1:+66536812 Msa0219060:CDS
AACAAGGGGTCCTCCAGCAA+TGG 0.575749 2_1:-66536867 None:intergenic
TTGACATGGAATATGGAAGA+TGG 0.583833 2_1:+66535470 Msa0219060:CDS
TTTGTTGAACACCATCAACA+AGG 0.585380 2_1:-66536883 None:intergenic
TGCATGGCGAGCCAAAGAAT+AGG 0.589611 2_1:+66531840 None:intergenic
AGATAATGAAATGAGAGTAA+TGG 0.594040 2_1:+66535552 Msa0219060:CDS
TATTTGGAAATACAGGAAGG+TGG 0.595349 2_1:+66532793 Msa0219060:intron
TATTTGATTCTGTGATGAAG+AGG 0.598778 2_1:-66533013 None:intergenic
GAAATGAGAGTAATGGTGGA+TGG 0.599016 2_1:+66535559 Msa0219060:CDS
TTGAACCATTTGCATGTCTG+TGG 0.607233 2_1:-66538814 None:intergenic
TTCATCTTATCAATGGCATG+TGG 0.610713 2_1:+66535644 Msa0219060:CDS
TATAATTTAAGTCCTACAAG+TGG 0.613828 2_1:+66538873 Msa0219060:three_prime_UTR
TAATGAAATGAGAGTAATGG+TGG 0.614982 2_1:+66535555 Msa0219060:CDS
TTGTTGAACACCATCAACAA+GGG 0.615909 2_1:-66536882 None:intergenic
GTTAAGAAACGGATTGCAAG+CGG 0.631491 2_1:+66535522 Msa0219060:CDS
TAGCAGAGCAGCAGATAATG+GGG 0.639568 2_1:+66536759 Msa0219060:CDS
GCATTCTTCACAGCAAGCAG+AGG 0.646463 2_1:+66536796 Msa0219060:CDS
GAGACGTTTAGCACAAAACA+GGG 0.648005 2_1:+66533976 Msa0219060:CDS
AGGAGGTGCAATGTTTGACA+TGG 0.651643 2_1:+66535456 Msa0219060:intron
ATTGATATAACATACTCTCG+TGG 0.657060 2_1:-66538195 None:intergenic
TGTTGAACACCATCAACAAG+GGG 0.659117 2_1:-66536881 None:intergenic
CTAACCATGATAATTTCAGA+GGG 0.659541 2_1:-66535712 None:intergenic
TGAGCTTTATGTGCATGATG+AGG 0.678992 2_1:+66539008 Msa0219060:three_prime_UTR
GAAGGTGGTAACAAATCAGG+AGG 0.695839 2_1:+66532808 Msa0219060:CDS
GGTATGTTCATGGATTGGAG+TGG 0.698181 2_1:+66534304 Msa0219060:CDS
TAATGGGGATGTATGGACTG+AGG 0.699689 2_1:+66536774 Msa0219060:CDS
ACGTTTAGCACAAAACAGGG+AGG 0.779708 2_1:+66533979 Msa0219060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTCAATAAATTATAAATA+AGG + chr2_1:66531961-66531980 Msa0219060:intron 10.0%
!! AAATATAAAGTTAATAGATT+AGG + chr2_1:66532392-66532411 Msa0219060:intron 10.0%
!! GTATAGTTAAATAATTTAAT+CGG - chr2_1:66532763-66532782 None:intergenic 10.0%
!!! ATTTTAACTTTTAATTGAAA+AGG + chr2_1:66534282-66534301 Msa0219060:intron 10.0%
!!! TTTTAACTTTTAATTGAAAA+GGG + chr2_1:66534283-66534302 Msa0219060:intron 10.0%
!! GAATTATAAAAATATACAAT+AGG + chr2_1:66534587-66534606 Msa0219060:intron 10.0%
!!! GAGTTTATATATTTTAAAAA+AGG - chr2_1:66534638-66534657 None:intergenic 10.0%
!! TTATTGTATTAATAAATTGT+AGG + chr2_1:66535436-66535455 Msa0219060:intron 10.0%
!!! TCTATAATTAATTTGTAATT+TGG + chr2_1:66535755-66535774 Msa0219060:intron 10.0%
!!! ATAAAAAAGTTTTATCTTTT+AGG + chr2_1:66537808-66537827 Msa0219060:intron 10.0%
!! AAAAAGATGTATAATAAATA+GGG - chr2_1:66538431-66538450 None:intergenic 10.0%
!! TAATTAAAGATAAAGAAAAA+TGG - chr2_1:66538723-66538742 None:intergenic 10.0%
!!! AATACCTTTTACAATTATTT+TGG + chr2_1:66532429-66532448 Msa0219060:intron 15.0%
!! TTTACCAAAATAATTGTAAA+AGG - chr2_1:66532436-66532455 None:intergenic 15.0%
!!! AAATTTAAAGCCTTTTATTT+TGG + chr2_1:66532456-66532475 Msa0219060:intron 15.0%
!! TAAGCATAATTAAAATAGAT+TGG - chr2_1:66532621-66532640 None:intergenic 15.0%
!! ATCAGATCATAATAATAATA+TGG + chr2_1:66532918-66532937 Msa0219060:CDS 15.0%
!!! TTTTTTTTGTTGTAGAAAAA+AGG + chr2_1:66533816-66533835 Msa0219060:intron 15.0%
!!! AGTTTAGTTTACATTTTTTT+GGG + chr2_1:66534356-66534375 Msa0219060:intron 15.0%
!! AATAAATTACTAGTAAATGA+TGG - chr2_1:66534432-66534451 None:intergenic 15.0%
!! AGTTATTTATTCATAGATTT+CGG - chr2_1:66534558-66534577 None:intergenic 15.0%
!!! CATTGTTTCAAATTATTTTT+TGG + chr2_1:66534906-66534925 Msa0219060:intron 15.0%
!! AATATGACTAAAAAAAAAAG+TGG - chr2_1:66535122-66535141 None:intergenic 15.0%
!! TAATCACAAGAAATTAAATT+TGG + chr2_1:66535274-66535293 Msa0219060:intron 15.0%
!!! TTTACATTTTGATATTATGT+CGG - chr2_1:66535344-66535363 None:intergenic 15.0%
!! TTAATAAAGGAATTCTATTA+TGG + chr2_1:66535813-66535832 Msa0219060:intron 15.0%
!! TAATAAAGGAATTCTATTAT+GGG + chr2_1:66535814-66535833 Msa0219060:intron 15.0%
!! ACAAAATAAATTGTAACAAA+CGG + chr2_1:66536124-66536143 Msa0219060:intron 15.0%
!! TTAATTAATGAAATCAATGT+CGG + chr2_1:66536294-66536313 Msa0219060:intron 15.0%
!!! ATTGCTTTCTTTTTTATAAT+TGG + chr2_1:66537201-66537220 Msa0219060:intron 15.0%
!!! ATTATGTTAGTTAGTTTTTA+CGG - chr2_1:66537841-66537860 None:intergenic 15.0%
!! AAAGAAATAATTAATGTAGT+TGG - chr2_1:66538398-66538417 None:intergenic 15.0%
!! AAAAGATGTATAATAAATAG+GGG - chr2_1:66538430-66538449 None:intergenic 15.0%
!! GAAAAAGATGTATAATAAAT+AGG - chr2_1:66538432-66538451 None:intergenic 15.0%
!! TGAATATAACAAAAGAAATT+TGG - chr2_1:66538754-66538773 None:intergenic 15.0%
!! TAATACATTAAACTTGATGA+AGG - chr2_1:66531939-66531958 None:intergenic 20.0%
!!! TAGTACTGTTTTATTCATTT+TGG + chr2_1:66531987-66532006 Msa0219060:intron 20.0%
!!! AATGTTTTTGTTTGTTTGTT+AGG + chr2_1:66532034-66532053 Msa0219060:intron 20.0%
!! ACTTTATATTTCAGTAGTTA+TGG - chr2_1:66532383-66532402 None:intergenic 20.0%
!!! GCATTATTTTAATTGAATCA+AGG - chr2_1:66532725-66532744 None:intergenic 20.0%
!!! CTATACTAATGATTTGTATT+TGG + chr2_1:66532777-66532796 Msa0219060:intron 20.0%
!!! TTTACTATTAACCTTTTCTT+TGG - chr2_1:66533049-66533068 None:intergenic 20.0%
!! GTATCTATATCTATATGTAT+AGG - chr2_1:66534044-66534063 None:intergenic 20.0%
!!! GAGTTTAGTTTACATTTTTT+TGG + chr2_1:66534355-66534374 Msa0219060:intron 20.0%
!!! GTTTAGTTTACATTTTTTTG+GGG + chr2_1:66534357-66534376 Msa0219060:intron 20.0%
!!! ATACTTTTGAACATAAACAT+TGG - chr2_1:66534613-66534632 None:intergenic 20.0%
!! TAGTTTATACATGATAGAAA+AGG - chr2_1:66534679-66534698 None:intergenic 20.0%
!! ATCTTCATCGTATTATTATA+GGG - chr2_1:66534783-66534802 None:intergenic 20.0%
!! AATCTTCATCGTATTATTAT+AGG - chr2_1:66534784-66534803 None:intergenic 20.0%
!! AAAAGCCAAAGTATATATAA+AGG - chr2_1:66535063-66535082 None:intergenic 20.0%
!!! AGTCATATTAATACAACTTT+TGG + chr2_1:66535133-66535152 Msa0219060:intron 20.0%
!!! ATATTAATACAACTTTTGGA+AGG + chr2_1:66535137-66535156 Msa0219060:intron 20.0%
!! TTTGGAAGGAAAAAAAAAAA+AGG + chr2_1:66535151-66535170 Msa0219060:intron 20.0%
!! TTGTATTAATAAATTGTAGG+AGG + chr2_1:66535439-66535458 Msa0219060:intron 20.0%
!! AACGTAAAACTTCTTAATAA+AGG + chr2_1:66535800-66535819 Msa0219060:intron 20.0%
!! AAACTATTTCAAAAAGATGT+TGG - chr2_1:66536003-66536022 None:intergenic 20.0%
!! CAAAATAAATTGTAACAAAC+GGG + chr2_1:66536125-66536144 Msa0219060:intron 20.0%
!!! ATATGCTAATGTTGATAATT+TGG + chr2_1:66536702-66536721 Msa0219060:intron 20.0%
!! ATTAAATTCTATTATGTACC+TGG - chr2_1:66536955-66536974 None:intergenic 20.0%
!!! AAAGTTTTTCCATATATAGT+TGG + chr2_1:66537175-66537194 Msa0219060:intron 20.0%
!!! ATACCTAACATTTTATTATC+TGG + chr2_1:66537322-66537341 Msa0219060:intron 20.0%
!! AATAAATTAAGAAGTTAGCT+TGG + chr2_1:66537764-66537783 Msa0219060:intron 20.0%
!!! TTATGTTAGTTAGTTTTTAC+GGG - chr2_1:66537840-66537859 None:intergenic 20.0%
!! GTAAAAATTTAACTAATCAC+TGG - chr2_1:66537927-66537946 None:intergenic 20.0%
!!! AATTCATGTTTTTCAATTGA+AGG + chr2_1:66538038-66538057 Msa0219060:intron 20.0%
!!! TATTAATTCCTTGTACATTT+TGG + chr2_1:66538246-66538265 Msa0219060:intron 20.0%
!! TCAAAACAAAAACCATAATT+AGG - chr2_1:66538283-66538302 None:intergenic 20.0%
!! GACAAAAAAAAATCTCAAAA+GGG - chr2_1:66538348-66538367 None:intergenic 20.0%
!!! TTCTTTTGTTATATTCAAAC+AGG + chr2_1:66538757-66538776 Msa0219060:intron 20.0%
!! CACATTTACAATAAACATAA+AGG - chr2_1:66538985-66539004 None:intergenic 20.0%
!!! AAGAATCTGGTTTTGATTTT+GGG + chr2_1:66532061-66532080 Msa0219060:CDS 25.0%
! GAAAGAAAGAAAAAAAGCAA+AGG + chr2_1:66532227-66532246 Msa0219060:intron 25.0%
!! AATCATTATGGTATTGGAAA+TGG - chr2_1:66532282-66532301 None:intergenic 25.0%
! TCAGTAAAAATCATGCAAAA+GGG - chr2_1:66532358-66532377 None:intergenic 25.0%
!! TGATTTGTATTTGGAAATAC+AGG + chr2_1:66532786-66532805 Msa0219060:intron 25.0%
!!! GAAGATGCTTTTTTACTTAA+GGG - chr2_1:66532892-66532911 None:intergenic 25.0%
!!! AGAAGATGCTTTTTTACTTA+AGG - chr2_1:66532893-66532912 None:intergenic 25.0%
! CAAAATTTCCCTTAGTTTAT+GGG - chr2_1:66533130-66533149 None:intergenic 25.0%
!!! TTGATTTTCTGAAATCTGTT+GGG - chr2_1:66533217-66533236 None:intergenic 25.0%
!!! TTTGATTTTCTGAAATCTGT+TGG - chr2_1:66533218-66533237 None:intergenic 25.0%
! AAGAAACAGTTCACAAAAAA+TGG + chr2_1:66533477-66533496 Msa0219060:intron 25.0%
!! TTTCAAGTGTAGAACAAAAA+TGG - chr2_1:66533742-66533761 None:intergenic 25.0%
!! TGTTGATGTTTTATATGCTA+AGG + chr2_1:66533927-66533946 Msa0219060:intron 25.0%
!!! ACTCATTGCATTTTTTTTAC+AGG + chr2_1:66534108-66534127 Msa0219060:intron 25.0%
! TAGATTAAAGCTTACACAAT+TGG + chr2_1:66534156-66534175 Msa0219060:CDS 25.0%
! AAAGTCAAAACTTGATCTTA+TGG + chr2_1:66534494-66534513 Msa0219060:intron 25.0%
! AAGTCAAAACTTGATCTTAT+GGG + chr2_1:66534495-66534514 Msa0219060:intron 25.0%
!! TATATAAAAGCTGCTTTCAA+AGG + chr2_1:66534699-66534718 Msa0219060:intron 25.0%
!! ATATAAAAGCTGCTTTCAAA+GGG + chr2_1:66534700-66534719 Msa0219060:intron 25.0%
!! TTTTGCAGCTTGAATTAATT+TGG + chr2_1:66534740-66534759 Msa0219060:intron 25.0%
! AGTCTCCTTTATATATACTT+TGG + chr2_1:66535055-66535074 Msa0219060:intron 25.0%
!! AAGAAATGCACTTTAAGAAA+AGG + chr2_1:66535216-66535235 Msa0219060:intron 25.0%
! TTTCTTGTGATTAAACAAAG+TGG - chr2_1:66535267-66535286 None:intergenic 25.0%
! GAATATTATTGTGAAGAGTT+TGG - chr2_1:66535392-66535411 None:intergenic 25.0%
! TTCTTAACTCCGTTAATAAA+CGG - chr2_1:66535510-66535529 None:intergenic 25.0%
! TTATTAACGGAGTTAAGAAA+CGG + chr2_1:66535511-66535530 Msa0219060:CDS 25.0%
! AGATAATGAAATGAGAGTAA+TGG + chr2_1:66535552-66535571 Msa0219060:CDS 25.0%
! GATCAAATATTTAGACTCAA+AGG + chr2_1:66535598-66535617 Msa0219060:CDS 25.0%
!! TTTTTAACAACTTGTAGCAA+AGG + chr2_1:66536047-66536066 Msa0219060:intron 25.0%
! AATAAAAAAGTGAGTGTCAT+AGG + chr2_1:66536356-66536375 Msa0219060:intron 25.0%
! ATAAAAAAGTGAGTGTCATA+GGG + chr2_1:66536357-66536376 Msa0219060:intron 25.0%
! GCAATAATTTACTGTTACAT+TGG - chr2_1:66536632-66536651 None:intergenic 25.0%
!! TTACACACTAATTTGCATTA+AGG + chr2_1:66536670-66536689 Msa0219060:intron 25.0%
! AGCAATATTCCAACTATATA+TGG - chr2_1:66537187-66537206 None:intergenic 25.0%
!!! CTTTTTTATAATTGGAACCA+AGG + chr2_1:66537209-66537228 Msa0219060:intron 25.0%
! TTAGATCAGAAGGAAATAAT+GGG - chr2_1:66537250-66537269 None:intergenic 25.0%
! GTACCAGATAATAAAATGTT+AGG - chr2_1:66537328-66537347 None:intergenic 25.0%
! TATGAGATTAGCAACATAAT+TGG - chr2_1:66537564-66537583 None:intergenic 25.0%
! GAAATATTACATCAAGCTTA+TGG - chr2_1:66537652-66537671 None:intergenic 25.0%
!!! TTGAGTGAAACATTTTAAGA+TGG - chr2_1:66537674-66537693 None:intergenic 25.0%
! AAAATGTTTCACTCAAAAGT+TGG + chr2_1:66537678-66537697 Msa0219060:intron 25.0%
!! TTTCAACTATTTTCCCTTAT+TGG + chr2_1:66537979-66537998 Msa0219060:intron 25.0%
!!! CTTGTTATTGGAGAATATTA+TGG + chr2_1:66538135-66538154 Msa0219060:CDS 25.0%
!! TCAAAAGGGTCTTATAATTA+GGG - chr2_1:66538334-66538353 None:intergenic 25.0%
! GGACAAAAAAAAATCTCAAA+AGG - chr2_1:66538349-66538368 None:intergenic 25.0%
!!! ATTTTATCCTTTAAGAGAGA+GGG - chr2_1:66538495-66538514 None:intergenic 25.0%
!!! AATTTTATCCTTTAAGAGAG+AGG - chr2_1:66538496-66538515 None:intergenic 25.0%
!!! ATTCCCGTTATTTTTTCAAA+AGG + chr2_1:66538568-66538587 Msa0219060:intron 25.0%
!!! TTCCCGTTATTTTTTCAAAA+GGG + chr2_1:66538569-66538588 Msa0219060:intron 25.0%
! TATAATTTAAGTCCTACAAG+TGG + chr2_1:66538873-66538892 Msa0219060:three_prime_UTR 25.0%
! TATTTCTCTTTAGCTAAAGT+TGG - chr2_1:66539039-66539058 None:intergenic 25.0%
AATCAAGTTCTCCTATTCTT+TGG - chr2_1:66531854-66531873 None:intergenic 30.0%
TCCTATGATGAATTCCATAA+GGG - chr2_1:66531908-66531927 None:intergenic 30.0%
ATCCTATGATGAATTCCATA+AGG - chr2_1:66531909-66531928 None:intergenic 30.0%
TTTGTTAGGAATGAAGAATC+TGG + chr2_1:66532048-66532067 Msa0219060:intron 30.0%
!!! GAAGAATCTGGTTTTGATTT+TGG + chr2_1:66532060-66532079 Msa0219060:CDS 30.0%
!!! AGAATCTGGTTTTGATTTTG+GGG + chr2_1:66532062-66532081 Msa0219060:CDS 30.0%
! TCTAAGGTCAGAAAAAAAAG+TGG - chr2_1:66532175-66532194 None:intergenic 30.0%
! CAACTCTTTCTAAAAGTAGA+GGG + chr2_1:66532205-66532224 Msa0219060:intron 30.0%
GTCAGTAAAAATCATGCAAA+AGG - chr2_1:66532359-66532378 None:intergenic 30.0%
AGAGGATCAACCAAAATAAA+AGG - chr2_1:66532469-66532488 None:intergenic 30.0%
CATCAAAGAAAAAATCTGAG+AGG - chr2_1:66532487-66532506 None:intergenic 30.0%
TTGTATTTGGAAATACAGGA+AGG + chr2_1:66532790-66532809 Msa0219060:intron 30.0%
TATTTGATTCTGTGATGAAG+AGG - chr2_1:66533016-66533035 None:intergenic 30.0%
TTTCCATATCCCATAAACTA+AGG + chr2_1:66533118-66533137 Msa0219060:intron 30.0%
TTCCATATCCCATAAACTAA+GGG + chr2_1:66533119-66533138 Msa0219060:intron 30.0%
CCAAAATTTCCCTTAGTTTA+TGG - chr2_1:66533131-66533150 None:intergenic 30.0%
! CCATAAACTAAGGGAAATTT+TGG + chr2_1:66533128-66533147 Msa0219060:intron 30.0%
TTGAATTTGTACGATCTTCT+TGG + chr2_1:66533170-66533189 Msa0219060:intron 30.0%
ATGTGATATGGATAGCAAAA+TGG - chr2_1:66533514-66533533 None:intergenic 30.0%
CAATCATCTTCAATGTGATA+TGG - chr2_1:66533526-66533545 None:intergenic 30.0%
ATTGCATTCCTACTGAAAAA+TGG + chr2_1:66533542-66533561 Msa0219060:intron 30.0%
! TCATGTCATCTTTTTGTTCT+TGG + chr2_1:66533615-66533634 Msa0219060:intron 30.0%
ATGGTTAAACAAATGAGTGA+GGG - chr2_1:66533723-66533742 None:intergenic 30.0%
AATGGTTAAACAAATGAGTG+AGG - chr2_1:66533724-66533743 None:intergenic 30.0%
! AATTGAAAAGGGTATGTTCA+TGG + chr2_1:66534294-66534313 Msa0219060:intron 30.0%
CTGCAAAAGAAATATTCAAG+TGG - chr2_1:66534728-66534747 None:intergenic 30.0%
!! TAATTTGGCTCTCTATCTTT+AGG + chr2_1:66534755-66534774 Msa0219060:intron 30.0%
!! AATTTGGCTCTCTATCTTTA+GGG + chr2_1:66534756-66534775 Msa0219060:intron 30.0%
!! TGATATTATGTCGGTTGTTT+TGG - chr2_1:66535335-66535354 None:intergenic 30.0%
AGAAGACAACCGTTTATTAA+CGG + chr2_1:66535498-66535517 Msa0219060:CDS 30.0%
TAATGAAATGAGAGTAATGG+TGG + chr2_1:66535555-66535574 Msa0219060:CDS 30.0%
CTAACCATGATAATTTCAGA+GGG - chr2_1:66535715-66535734 None:intergenic 30.0%
ACTAACCATGATAATTTCAG+AGG - chr2_1:66535716-66535735 None:intergenic 30.0%
! AAGAGTGTGTAGTATAAAGA+GGG - chr2_1:66536270-66536289 None:intergenic 30.0%
! AAAGAGTGTGTAGTATAAAG+AGG - chr2_1:66536271-66536290 None:intergenic 30.0%
TAAAAAAGTGAGTGTCATAG+GGG + chr2_1:66536358-66536377 Msa0219060:intron 30.0%
TGTAAGAATAAAATCTTCGC+TGG - chr2_1:66536990-66537009 None:intergenic 30.0%
CTTAGATCAGAAGGAAATAA+TGG - chr2_1:66537251-66537270 None:intergenic 30.0%
TTATTTCCTTCTGATCTAAG+TGG + chr2_1:66537251-66537270 Msa0219060:intron 30.0%
AGTCAAAAGCAAATGTCAAT+AGG - chr2_1:66537427-66537446 None:intergenic 30.0%
TTAAATTACCTCCACTACTT+TGG + chr2_1:66537521-66537540 Msa0219060:intron 30.0%
!!! AAGTTGGTTTTAGAAAGTGA+TGG + chr2_1:66537694-66537713 Msa0219060:intron 30.0%
GATAAGCAATAAGCCAATAA+GGG - chr2_1:66537995-66538014 None:intergenic 30.0%
AGATAAGCAATAAGCCAATA+AGG - chr2_1:66537996-66538015 None:intergenic 30.0%
ATTGATATAACATACTCTCG+TGG - chr2_1:66538198-66538217 None:intergenic 30.0%
CATTTCAACCAAAATGTACA+AGG - chr2_1:66538257-66538276 None:intergenic 30.0%
GTTGAAATGCATCCTAATTA+TGG + chr2_1:66538268-66538287 Msa0219060:intron 30.0%
! CTCAAAAGGGTCTTATAATT+AGG - chr2_1:66538335-66538354 None:intergenic 30.0%
ATGTAGTTGGAAATAGCAAA+GGG - chr2_1:66538385-66538404 None:intergenic 30.0%
AATGTAGTTGGAAATAGCAA+AGG - chr2_1:66538386-66538405 None:intergenic 30.0%
! AATAACGGGAATTAAGATAG+TGG - chr2_1:66538560-66538579 None:intergenic 30.0%
! TTTGTGAAATGATTCTGAGA+AGG - chr2_1:66538840-66538859 None:intergenic 30.0%
GAAAATGTCAGTTGTTATCT+AGG + chr2_1:66538915-66538934 Msa0219060:three_prime_UTR 30.0%
! TACTTTTCAATCATCTGTTC+TGG + chr2_1:66538957-66538976 Msa0219060:three_prime_UTR 30.0%
!!! GAACTTGATTTTTCTGAGAC+AGG + chr2_1:66531864-66531883 Msa0219060:CDS 35.0%
TCCCTTATGGAATTCATCAT+AGG + chr2_1:66531904-66531923 Msa0219060:CDS 35.0%
!! GAAGAAGCAATTGTTTTGCA+AGG + chr2_1:66532090-66532109 Msa0219060:CDS 35.0%
! GTTTTGCAAGGAGTTAAGAA+TGG + chr2_1:66532102-66532121 Msa0219060:CDS 35.0%
! GAGTTGGTTATGCTTATCTA+AGG - chr2_1:66532191-66532210 None:intergenic 35.0%
!! CCTCTACTTTTAGAAAGAGT+TGG - chr2_1:66532207-66532226 None:intergenic 35.0%
! CCAACTCTTTCTAAAAGTAG+AGG + chr2_1:66532204-66532223 Msa0219060:intron 35.0%
CCTCAGAATCATTATGGTAT+TGG - chr2_1:66532288-66532307 None:intergenic 35.0%
CCAATACCATAATGATTCTG+AGG + chr2_1:66532285-66532304 Msa0219060:intron 35.0%
CTATTGCCTCAGAATCATTA+TGG - chr2_1:66532294-66532313 None:intergenic 35.0%
TTACTACTGTTGAGGTTTGA+TGG - chr2_1:66532582-66532601 None:intergenic 35.0%
!! AGAGAGTATTACTACTGTTG+AGG - chr2_1:66532590-66532609 None:intergenic 35.0%
TAATTGAATCAAGGCGACAA+GGG - chr2_1:66532716-66532735 None:intergenic 35.0%
TTAATTGAATCAAGGCGACA+AGG - chr2_1:66532717-66532736 None:intergenic 35.0%
TATTTGGAAATACAGGAAGG+TGG + chr2_1:66532793-66532812 Msa0219060:intron 35.0%
TTCCCTTAGTTTATGGGATA+TGG - chr2_1:66533124-66533143 None:intergenic 35.0%
TTCATGTCAGAAAATCGTTC+AGG - chr2_1:66533263-66533282 None:intergenic 35.0%
!! CCATTTGACCATTTTTCAGT+AGG - chr2_1:66533553-66533572 None:intergenic 35.0%
CCTACTGAAAAATGGTCAAA+TGG + chr2_1:66533550-66533569 Msa0219060:intron 35.0%
TTGTTGTAGAAAAAAGGAGC+TGG + chr2_1:66533822-66533841 Msa0219060:intron 35.0%
ATAAACACCTTTGCATCAAG+TGG - chr2_1:66533864-66533883 None:intergenic 35.0%
GAAAAGTCGTCTAAGGAAAA+AGG + chr2_1:66534009-66534028 Msa0219060:CDS 35.0%
! AAAAGGGTATGTTCATGGAT+TGG + chr2_1:66534299-66534318 Msa0219060:intron 35.0%
!! ATTTGGCTCTCTATCTTTAG+GGG + chr2_1:66534757-66534776 Msa0219060:intron 35.0%
AGCACCTAAAATCTCATAGA+GGG + chr2_1:66535029-66535048 Msa0219060:intron 35.0%
! TATGCCCTCTATGAGATTTT+AGG - chr2_1:66535036-66535055 None:intergenic 35.0%
GGAAATGAGCAGTATCATAA+TGG - chr2_1:66535101-66535120 None:intergenic 35.0%
GCAATGTTTGACATGGAATA+TGG + chr2_1:66535463-66535482 Msa0219060:CDS 35.0%
TTGACATGGAATATGGAAGA+TGG + chr2_1:66535470-66535489 Msa0219060:CDS 35.0%
GACGTGTTTCATCTTATCAA+TGG + chr2_1:66535637-66535656 Msa0219060:CDS 35.0%
TTCATCTTATCAATGGCATG+TGG + chr2_1:66535644-66535663 Msa0219060:CDS 35.0%
!! TAGACCCTCTGAAATTATCA+TGG + chr2_1:66535708-66535727 Msa0219060:CDS 35.0%
TAACAACTTGTAGCAAAGGA+TGG + chr2_1:66536051-66536070 Msa0219060:intron 35.0%
AAAAAAGTGAGTGTCATAGG+GGG + chr2_1:66536359-66536378 Msa0219060:intron 35.0%
TTTAGTGAAGAAAGAGCTTG+TGG + chr2_1:66536483-66536502 Msa0219060:intron 35.0%
GTTGTCATATGTCAGTTGTA+TGG + chr2_1:66536588-66536607 Msa0219060:intron 35.0%
TTGTTGAACACCATCAACAA+GGG - chr2_1:66536885-66536904 None:intergenic 35.0%
TTTGTTGAACACCATCAACA+AGG - chr2_1:66536886-66536905 None:intergenic 35.0%
!! TGTTGATGGTGTTCAACAAA+TGG + chr2_1:66536886-66536905 Msa0219060:CDS 35.0%
GGATGATAAGCAATATTCCT+TGG - chr2_1:66537229-66537248 None:intergenic 35.0%
! CTAACTTTTGAGCAACATGA+TGG - chr2_1:66537628-66537647 None:intergenic 35.0%
CATCATGTTGCTCAAAAGTT+AGG + chr2_1:66537626-66537645 Msa0219060:intron 35.0%
AATTGAAGGCTGATAACTTG+AGG + chr2_1:66538052-66538071 Msa0219060:intron 35.0%
! AAGGGTCTTATAATTAGGGA+CGG - chr2_1:66538330-66538349 None:intergenic 35.0%
! GCAAAGGGGTCTTATAAAAA+GGG - chr2_1:66538370-66538389 None:intergenic 35.0%
! AGCAAAGGGGTCTTATAAAA+AGG - chr2_1:66538371-66538390 None:intergenic 35.0%
TGTAGTTGGAAATAGCAAAG+GGG - chr2_1:66538384-66538403 None:intergenic 35.0%
!! GGCCCTTTTGAAAAAATAAC+GGG - chr2_1:66538574-66538593 None:intergenic 35.0%
!! GGGCCCTTTTGAAAAAATAA+CGG - chr2_1:66538575-66538594 None:intergenic 35.0%
TTCAAAAGGGCCCTATAATT+AGG + chr2_1:66538582-66538601 Msa0219060:intron 35.0%
TCAAAAGGGCCCTATAATTA+GGG + chr2_1:66538583-66538602 Msa0219060:intron 35.0%
TCAACTCATCATGTCCCTTA+TGG + chr2_1:66531891-66531910 Msa0219060:CDS 40.0%
!! TGATTCTGAGGCAATAGACA+TGG + chr2_1:66532297-66532316 Msa0219060:intron 40.0%
!! GATTCTGAGGCAATAGACAT+GGG + chr2_1:66532298-66532317 Msa0219060:intron 40.0%
AATCATGCAAAAGGGAAGTG+AGG - chr2_1:66532350-66532369 None:intergenic 40.0%
GAGGTTTGATGGAATCTCAT+TGG - chr2_1:66532571-66532590 None:intergenic 40.0%
AGGGTGATTCTTGCTCAAAA+GGG - chr2_1:66532873-66532892 None:intergenic 40.0%
AAGGGTGATTCTTGCTCAAA+AGG - chr2_1:66532874-66532893 None:intergenic 40.0%
CAGAAAATCGTTCAGGAATC+AGG - chr2_1:66533256-66533275 None:intergenic 40.0%
AGATAAGCCACTTGATGCAA+AGG + chr2_1:66533854-66533873 Msa0219060:CDS 40.0%
TGAGACGTTTAGCACAAAAC+AGG + chr2_1:66533975-66533994 Msa0219060:CDS 40.0%
GAGACGTTTAGCACAAAACA+GGG + chr2_1:66533976-66533995 Msa0219060:CDS 40.0%
GTTGGAGGAAATATAAGCTC+TGG + chr2_1:66534331-66534350 Msa0219060:CDS 40.0%
GAGCACCTAAAATCTCATAG+AGG + chr2_1:66535028-66535047 Msa0219060:intron 40.0%
! GACTAGCTAGTGCAATAATG+TGG - chr2_1:66535311-66535330 None:intergenic 40.0%
!! GTTAAGAAACGGATTGCAAG+CGG + chr2_1:66535522-66535541 Msa0219060:CDS 40.0%
! GAAATGAGAGTAATGGTGGA+TGG + chr2_1:66535559-66535578 Msa0219060:CDS 40.0%
! GTCTAAAACCACCAATCCAA+AGG - chr2_1:66535693-66535712 None:intergenic 40.0%
CTTATGAGAAAGTGACGTTG+CGG - chr2_1:66536569-66536588 None:intergenic 40.0%
TCAGATGTTGATCCAGCAAT+TGG + chr2_1:66536730-66536749 Msa0219060:intron 40.0%
TGTTGAACACCATCAACAAG+GGG - chr2_1:66536884-66536903 None:intergenic 40.0%
CAACAAATGGTTGTTGCCAT+AGG + chr2_1:66536899-66536918 Msa0219060:CDS 40.0%
GCGAAGAAAACCTTCAAGAT+TGG - chr2_1:66536933-66536952 None:intergenic 40.0%
ACTGCATGCATATATTGGAC+TGG + chr2_1:66537278-66537297 Msa0219060:intron 40.0%
TCTCAAGCTCAATCAAGATC+AGG - chr2_1:66537364-66537383 None:intergenic 40.0%
! CAACATGATGGAACATTTGC+AGG - chr2_1:66537616-66537635 None:intergenic 40.0%
GTGTGAGTAATCGACATAAC+TGG - chr2_1:66538092-66538111 None:intergenic 40.0%
! TTCGAGCTCTTAGTTCTCTT+TGG + chr2_1:66538163-66538182 Msa0219060:CDS 40.0%
! TCGAGCTCTTAGTTCTCTTT+GGG + chr2_1:66538164-66538183 Msa0219060:CDS 40.0%
AAACCAACCCTCTCTCTTAA+AGG + chr2_1:66538485-66538504 Msa0219060:intron 40.0%
! TATCCTTTAAGAGAGAGGGT+TGG - chr2_1:66538491-66538510 None:intergenic 40.0%
TACCTCCGTCCCTAATTATA+GGG - chr2_1:66538322-66538341 None:intergenic 40.0%
TTTGCATGTCTGTGGTTGTT+TGG - chr2_1:66538809-66538828 None:intergenic 40.0%
AACAACCACAGACATGCAAA+TGG + chr2_1:66538809-66538828 Msa0219060:CDS 40.0%
TTGAACCATTTGCATGTCTG+TGG - chr2_1:66538817-66538836 None:intergenic 40.0%
TCCTACAAGTGGTTCTTGTT+GGG + chr2_1:66538884-66538903 Msa0219060:three_prime_UTR 40.0%
! TGAGCTTTATGTGCATGATG+AGG + chr2_1:66539008-66539027 Msa0219060:three_prime_UTR 40.0%
! CAATAGACATGGGAAGGTGT+GGG + chr2_1:66532308-66532327 Msa0219060:intron 45.0%
! AATAGACATGGGAAGGTGTG+GGG + chr2_1:66532309-66532328 Msa0219060:intron 45.0%
AAGGTGTGGGGTTACAAACT+TGG + chr2_1:66532321-66532340 Msa0219060:intron 45.0%
AACATTTCCAGTGTAGCAGC+AGG - chr2_1:66532538-66532557 None:intergenic 45.0%
CACTGGAAATGTTCCCTTCT+TGG + chr2_1:66532545-66532564 Msa0219060:CDS 45.0%
GGAATCTCATTGGCCAAGAA+GGG - chr2_1:66532561-66532580 None:intergenic 45.0%
TGGAATCTCATTGGCCAAGA+AGG - chr2_1:66532562-66532581 None:intergenic 45.0%
CAGGAAGGTGGTAACAAATC+AGG + chr2_1:66532805-66532824 Msa0219060:intron 45.0%
GAAGGTGGTAACAAATCAGG+AGG + chr2_1:66532808-66532827 Msa0219060:CDS 45.0%
ATCAGCAGCAGCCAAAGAAA+AGG + chr2_1:66533035-66533054 Msa0219060:CDS 45.0%
TAGAGAGAGAGAGAGAGTGA+AGG + chr2_1:66533290-66533309 Msa0219060:intron 45.0%
AGAGAGAGAGAGTGAAGGAT+AGG + chr2_1:66533295-66533314 Msa0219060:intron 45.0%
ACGTTTAGCACAAAACAGGG+AGG + chr2_1:66533979-66533998 Msa0219060:CDS 45.0%
CTGCAAGGAAAAGTCGTCTA+AGG + chr2_1:66534002-66534021 Msa0219060:CDS 45.0%
!! GGTATGTTCATGGATTGGAG+TGG + chr2_1:66534304-66534323 Msa0219060:CDS 45.0%
!! ATGTTCATGGATTGGAGTGG+AGG + chr2_1:66534307-66534326 Msa0219060:CDS 45.0%
GCTAGTGCAATAATGTGGCA+AGG - chr2_1:66535306-66535325 None:intergenic 45.0%
! AGGAGGTGCAATGTTTGACA+TGG + chr2_1:66535456-66535475 Msa0219060:intron 45.0%
AAGCTGAACGTTGCTTCCTT+TGG + chr2_1:66535674-66535693 Msa0219060:CDS 45.0%
GAACGTTGCTTCCTTTGGAT+TGG + chr2_1:66535679-66535698 Msa0219060:CDS 45.0%
!! GTCATAGGGGGTGTCTAAAA+TGG + chr2_1:66536371-66536390 Msa0219060:intron 45.0%
ATTATCTGCTGCTCTGCTAG+TGG - chr2_1:66536758-66536777 None:intergenic 45.0%
ACTAGCAGAGCAGCAGATAA+TGG + chr2_1:66536757-66536776 Msa0219060:CDS 45.0%
CTAGCAGAGCAGCAGATAAT+GGG + chr2_1:66536758-66536777 Msa0219060:CDS 45.0%
TAGCAGAGCAGCAGATAATG+GGG + chr2_1:66536759-66536778 Msa0219060:CDS 45.0%
!! CAGCAGATAATGGGGATGTA+TGG + chr2_1:66536767-66536786 Msa0219060:CDS 45.0%
! TAATGGGGATGTATGGACTG+AGG + chr2_1:66536774-66536793 Msa0219060:CDS 45.0%
TCTCTTGTTGACACCATTGC+TGG + chr2_1:66536854-66536873 Msa0219060:CDS 45.0%
AAGATTGGCAAGCTTGCCTA+TGG - chr2_1:66536918-66536937 None:intergenic 45.0%
! TCTTGAAGGTTTTCTTCGCC+AGG + chr2_1:66536934-66536953 Msa0219060:CDS 45.0%
GCTGCACTGCATGCATATAT+TGG + chr2_1:66537273-66537292 Msa0219060:intron 45.0%
TGACGTGACAACCAAAGTAG+TGG - chr2_1:66537535-66537554 None:intergenic 45.0%
! AGAAGTTAGCTTGGTTGTCG+AGG + chr2_1:66537773-66537792 Msa0219060:intron 45.0%
!! GCGCGCTCTTTTCTTGTTAT+TGG + chr2_1:66538123-66538142 Msa0219060:CDS 45.0%
! GGTCTTATAATTAGGGACGG+AGG - chr2_1:66538327-66538346 None:intergenic 45.0%
AAGGGCCCTATAATTAGGGA+CGG + chr2_1:66538587-66538606 Msa0219060:intron 45.0%
CTACCTCCGTCCCTAATTAT+AGG - chr2_1:66538321-66538340 None:intergenic 45.0%
GTCCTACAAGTGGTTCTTGT+TGG + chr2_1:66538883-66538902 Msa0219060:three_prime_UTR 45.0%
!! AATTAAATAAAACTTATATA+TGG + chr2_1:66533790-66533809 Msa0219060:intron 5.0%
CTGAGGCAATAGACATGGGA+AGG + chr2_1:66532302-66532321 Msa0219060:intron 50.0%
GCAATAGACATGGGAAGGTG+TGG + chr2_1:66532307-66532326 Msa0219060:intron 50.0%
! CATTCAAAGAGCACGCTCTC+AGG + chr2_1:66534186-66534205 Msa0219060:CDS 50.0%
!! ATGGATTGGAGTGGAGGTGT+TGG + chr2_1:66534313-66534332 Msa0219060:CDS 50.0%
! CGTTGCTTCCTTTGGATTGG+TGG + chr2_1:66535682-66535701 Msa0219060:CDS 50.0%
GCATTCTTCACAGCAAGCAG+AGG + chr2_1:66536796-66536815 Msa0219060:CDS 50.0%
CTTGTTGACACCATTGCTGG+AGG + chr2_1:66536857-66536876 Msa0219060:CDS 50.0%
GGCAAGCTTGCCAATCTTGA+AGG + chr2_1:66536920-66536939 Msa0219060:CDS 50.0%
GTGCAGCCACTTAGATCAGA+AGG - chr2_1:66537260-66537279 None:intergenic 50.0%
CGTGACAACCAAAGTAGTGG+AGG - chr2_1:66537532-66537551 None:intergenic 50.0%
GCCCAACAAGAACCACTTGT+AGG - chr2_1:66538888-66538907 None:intergenic 50.0%
ATCCAGACCTGCTGCTACAC+TGG + chr2_1:66532528-66532547 Msa0219060:CDS 55.0%
TTCCAGTGTAGCAGCAGGTC+TGG - chr2_1:66532533-66532552 None:intergenic 55.0%
CACAAAACAGGGAGGCTGCA+AGG + chr2_1:66533987-66534006 Msa0219060:CDS 55.0%
!! GATTGGAGTGGAGGTGTTGG+AGG + chr2_1:66534316-66534335 Msa0219060:CDS 55.0%
CTGCTAGTGGCTCCAATTGC+TGG - chr2_1:66536745-66536764 None:intergenic 55.0%
GCAGAGGAAGCTCTCTCACA+AGG + chr2_1:66536812-66536831 Msa0219060:CDS 55.0%
AACAAGGGGTCCTCCAGCAA+TGG - chr2_1:66536870-66536889 None:intergenic 55.0%
GGCCCTATAATTAGGGACGG+AGG + chr2_1:66538590-66538609 Msa0219060:intron 55.0%
GCTGGAGGACCCCTTGTTGA+TGG + chr2_1:66536872-66536891 Msa0219060:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 66531843 66539077 66531843 ID=Msa0219060;Name=Msa0219060
chr2_1 mRNA 66531843 66539077 66531843 ID=Msa0219060-mRNA-1;Parent=Msa0219060;Name=Msa0219060-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.18|0.16|1|1|1|12|211|494
chr2_1 exon 66531843 66531952 66531843 ID=Msa0219060-mRNA-1:exon:18705;Parent=Msa0219060-mRNA-1
chr2_1 exon 66532056 66532144 66532056 ID=Msa0219060-mRNA-1:exon:18706;Parent=Msa0219060-mRNA-1
chr2_1 exon 66532518 66532597 66532518 ID=Msa0219060-mRNA-1:exon:18707;Parent=Msa0219060-mRNA-1
chr2_1 exon 66532808 66533056 66532808 ID=Msa0219060-mRNA-1:exon:18708;Parent=Msa0219060-mRNA-1
chr2_1 exon 66533831 66533875 66533831 ID=Msa0219060-mRNA-1:exon:18709;Parent=Msa0219060-mRNA-1
chr2_1 exon 66533971 66534030 66533971 ID=Msa0219060-mRNA-1:exon:18710;Parent=Msa0219060-mRNA-1
chr2_1 exon 66534130 66534207 66534130 ID=Msa0219060-mRNA-1:exon:18711;Parent=Msa0219060-mRNA-1
chr2_1 exon 66534304 66534352 66534304 ID=Msa0219060-mRNA-1:exon:18712;Parent=Msa0219060-mRNA-1
chr2_1 exon 66535458 66535729 66535458 ID=Msa0219060-mRNA-1:exon:18713;Parent=Msa0219060-mRNA-1
chr2_1 exon 66536734 66536955 66536734 ID=Msa0219060-mRNA-1:exon:18714;Parent=Msa0219060-mRNA-1
chr2_1 exon 66538060 66538202 66538060 ID=Msa0219060-mRNA-1:exon:18715;Parent=Msa0219060-mRNA-1
chr2_1 exon 66538779 66539077 66538779 ID=Msa0219060-mRNA-1:exon:18716;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66531843 66531952 66531843 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66532056 66532144 66532056 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66532518 66532597 66532518 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66532808 66533056 66532808 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66533831 66533875 66533831 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66533971 66534030 66533971 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66534130 66534207 66534130 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66534304 66534352 66534304 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66535458 66535729 66535458 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66536734 66536955 66536734 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66538060 66538202 66538060 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 CDS 66538779 66538866 66538779 ID=Msa0219060-mRNA-1:cds;Parent=Msa0219060-mRNA-1
chr2_1 three_prime_UTR 66538867 66539077 66538867 ID=Msa0219060-mRNA-1:three_prime_utr;Parent=Msa0219060-mRNA-1
Gene Sequence

>Msa0219060

ATGGCGAGCCAAAGAATAGGAGAACTTGATTTTTCTGAGACAGGACATTCAACTCATCATGTCCCTTATGGAATTCATCATAGGATTAATAATCCTTCATCAAGTTTAATGAATGAAGAATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATTGTTTTGCAAGGAGTTAAGAATGGAAATGATGAAACAAAAGCATCTTTTTTCACATCCAGACCTGCTGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCATCAAACCTCAACAGTAGAAGGTGGTAACAAATCAGGAGGTGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAACCCTTTTGAGCAAGAATCACCCTTAAGTAAAAAAGCATCTTCTTTTTCATCAGATCATAATAATAATATGGATCAGCAGAATCTTCAGCTACAACAACAGAAGATAATAATATCAAATGATGCTTCTGCTACTATAAGAACAGCCTCTTCATCACAGAATCAAATATCAGCAGCAGCCAAAGAAAAGAAAAAAGGAGCTGGTTCAACATCAGATAAGCCACTTGATGCAAAGACATTGAGACGTTTAGCACAAAACAGGGAGGCTGCAAGGAAAAGTCGTCTAAGGAAAAAGGCTTATGTGCAGCAACTTGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACATTCAAAGAGCACGCTCTCAGGGTATGTTCATGGATTGGAGTGGAGGTGTTGGAGGAAATATAAGCTCTGGAGGTGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGACAACCGTTTATTAACGGAGTTAAGAAACGGATTGCAAGCGGCGTTAACAGATAATGAAATGAGAGTAATGGTGGATGGATATTTGTGTCATTATGATCAAATATTTAGACTCAAAGGTGTCACTGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGCTTCCTTTGGATTGGTGGTTTTAGACCCTCTGAAATTATCATGATGTTGATCCAGCAATTGGAGCCACTAGCAGAGCAGCAGATAATGGGGATGTATGGACTGAGGCATTCTTCACAGCAAGCAGAGGAAGCTCTCTCACAAGGACTTGACCAGTTGCAACAGTCTCTTGTTGACACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATAGGCAAGCTTGCCAATCTTGAAGGTTTTCTTCGCCAGGCTGATAACTTGAGGCAACAAACTCTTCACCAGTTATGTCGATTACTCACACTTCGTCAAGCAGCGCGCTCTTTTCTTGTTATTGGAGAATATTATGGACGACTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGAACATGATCAGTGATGATAACTCATGCCAAACAACCACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCACAAATTTCTGA

Protein sequence

>Msa0219060

MASQRIGELDFSETGHSTHHVPYGIHHRINNPSSSLMNEESGFDFGELEEAIVLQGVKNGNDETKASFFTSRPAATLEMFPSWPMRFHQTSTVEGGNKSGGESSDSALSSKNENPFEQESPLSKKASSFSSDHNNNMDQQNLQLQQQKIIISNDASATIRTASSSQNQISAAAKEKKKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDIQRARSQGMFMDWSGGVGGNISSGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAIGKLANLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRENMISDDNSCQTTTDMQMVQPSQNHFTNF*