AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0882740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0882740 MtrunA17_Chr6g0462421 91.579 380 21 4 2 371 1 379 0.0 674
Msa0882740 MtrunA17_Chr4g0045531 28.042 189 122 4 102 289 192 367 5.47e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0882740 AT1G34380.2 66.202 287 91 3 46 332 65 345 1.07e-140 404
Msa0882740 AT1G34380.3 67.704 257 77 3 46 302 65 315 4.59e-127 368
Msa0882740 AT1G34380.1 61.202 183 65 3 46 228 65 241 6.87e-76 236
Msa0882740 AT3G52050.6 26.667 270 165 8 72 340 160 397 2.08e-16 80.5
Msa0882740 AT3G52050.8 26.667 270 165 8 72 340 137 374 2.24e-16 80.5
Msa0882740 AT3G52050.7 26.667 270 165 8 72 340 137 374 2.24e-16 80.5
Msa0882740 AT3G52050.4 26.182 275 166 8 72 340 137 380 5.12e-16 79.3
Msa0882740 AT3G52050.5 29.146 199 121 5 72 269 160 339 6.22e-16 79.0
Msa0882740 AT3G52050.3 25.833 240 153 6 102 340 200 415 1.42e-15 78.2
Msa0882740 AT3G52050.2 25.833 240 153 6 102 340 177 392 1.84e-15 77.8
Msa0882740 AT3G52050.1 25.833 240 153 6 102 340 177 392 1.84e-15 77.8

Find 108 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTACCTTGTTCAAATATT+TGG 0.104207 6_1:-32141428 Msa0882740:CDS
ACAAAATTCCTCATAGTTAT+TGG 0.152917 6_1:+32141391 None:intergenic
TTTCATCATCTTCTTCTCTA+TGG 0.239574 6_1:+32145629 None:intergenic
TTTATTCTATTATTATTAAA+TGG 0.272019 6_1:-32141045 Msa0882740:three_prime_UTR
CAGGTAACAGAACCAGTTTC+TGG 0.284484 6_1:-32140801 Msa0882740:three_prime_UTR
CGAGAAATAAACCAACTTCT+AGG 0.290335 6_1:+32140928 None:intergenic
GAAGTTGCTTCCTTCTTATA+AGG 0.292216 6_1:-32145292 Msa0882740:CDS
CAACATCTCGTCCCTAGTTT+TGG 0.294874 6_1:-32142420 Msa0882740:CDS
TCGGCTTGGTGGTGAAAGTT+TGG 0.299248 6_1:+32141099 None:intergenic
ATTATAAATATAGACTAAAA+AGG 0.308674 6_1:-32141014 Msa0882740:three_prime_UTR
AAAGAGGGAGTGAGTATAGA+AGG 0.329465 6_1:-32145314 Msa0882740:CDS
AGTTGCTTAAAATCCTTATC+AGG 0.333724 6_1:+32143206 None:intergenic
ACTAACAATTTGCCAGAAAC+TGG 0.344474 6_1:+32140789 None:intergenic
CGGCTTGGTGGTGAAAGTTT+GGG 0.363683 6_1:+32141100 None:intergenic
GTTCATTGATAAAGAATAAC+AGG 0.370181 6_1:-32140820 Msa0882740:three_prime_UTR
CTACAACATCATCAGCTTCA+TGG 0.382590 6_1:+32143282 None:intergenic
AGGCAAGAACTTCATAGTTC+CGG 0.388172 6_1:+32142268 None:intergenic
AGTAATCAGCGTACTTTGTA+AGG 0.394664 6_1:+32142295 None:intergenic
CTGAACAAGTTCTCAAGAAA+GGG 0.400382 6_1:-32143250 Msa0882740:CDS
AATCAAAACAACAAAGCAAA+AGG 0.402997 6_1:-32145473 Msa0882740:CDS
GATGAAGTTGACGGTGTTCC+TGG 0.408426 6_1:-32142447 Msa0882740:CDS
GTAATGTCTCGCAGTGTAGA+AGG 0.412650 6_1:+32143130 None:intergenic
TCTGAACAAGTTCTCAAGAA+AGG 0.413733 6_1:-32143251 Msa0882740:CDS
GCTATCTAATTCCTAGAAGT+TGG 0.422231 6_1:-32140939 Msa0882740:three_prime_UTR
CTCCGATTGGCCTTATAAGA+AGG 0.433159 6_1:+32145282 None:intergenic
TGGTGGTGAAAGTTTGGGAC+CGG 0.439505 6_1:+32141105 None:intergenic
ATGAAGTTCTTGCCTTGAAA+AGG 0.444189 6_1:-32142260 Msa0882740:intron
GTAAGGGCATCCTGTGCATA+TGG 0.446005 6_1:+32142312 None:intergenic
GAAAGTTATGTAATATTAGT+AGG 0.446291 6_1:-32141071 Msa0882740:three_prime_UTR
GCGAATGGTGGTGGTGGAAG+TGG 0.449437 6_1:-32145249 Msa0882740:CDS
GAAAATAAGCTCAATTCAAA+CGG 0.451193 6_1:-32145719 None:intergenic
CCGGGCGTGTGCTCCTCTCT+AGG 0.453436 6_1:+32141124 None:intergenic
TTTGTTCCTTCATAACATAA+AGG 0.455799 6_1:+32145429 None:intergenic
AATTGTGTAGGATGTATTAT+AGG 0.460175 6_1:-32142471 Msa0882740:intron
CCGCTAGTGGACAGAGGGAT+TGG 0.465566 6_1:+32141232 None:intergenic
TTAGCAAAATAGTGTAAACT+AGG 0.467630 6_1:+32145405 None:intergenic
ACTTTCGAGGGTCGGCTTGG+TGG 0.468960 6_1:+32141088 None:intergenic
CTTTGCTCTGACTTAAATTG+AGG 0.469259 6_1:+32141206 None:intergenic
GGTGATTGCCTCTCCTGATA+AGG 0.472031 6_1:-32143219 Msa0882740:CDS
AGTCAGAGCAAAGCTATGTA+TGG 0.472353 6_1:-32141196 Msa0882740:three_prime_UTR
CTAATATTACATAACTTTCG+AGG 0.476772 6_1:+32141075 None:intergenic
GTGAATCCTTTATGTTATGA+AGG 0.476874 6_1:-32145435 Msa0882740:CDS
ATAGAAATCAAATTAGTGTT+GGG 0.480173 6_1:-32141324 Msa0882740:CDS
TATTAAATGCGGCTGCAGTA+AGG 0.480515 6_1:-32142347 Msa0882740:CDS
ATATAGGTTATAAAAGTTGA+TGG 0.484115 6_1:-32143305 Msa0882740:intron
CATAGAAATCAAATTAGTGT+TGG 0.485949 6_1:-32141325 Msa0882740:CDS
GCAGTCTTCCAACCAAAACT+AGG 0.486952 6_1:+32142408 None:intergenic
TGTCCCTACACAGGAATTGT+TGG 0.490583 6_1:-32141171 Msa0882740:three_prime_UTR
ATAACTTTCGAGGGTCGGCT+TGG 0.491713 6_1:+32141085 None:intergenic
TGTGCTCCTCTCTAGGTCTC+AGG 0.493356 6_1:+32141131 None:intergenic
TTCCTTCTTATAAGGCCAAT+CGG 0.498255 6_1:-32145284 Msa0882740:CDS
CTTCTTTCTAACATAAGCAC+TGG 0.500388 6_1:+32141348 None:intergenic
CTCAAGGATCAACTGATTCG+AGG 0.503611 6_1:-32141257 Msa0882740:three_prime_UTR
CAAAACTAGGGACGAGATGT+TGG 0.503791 6_1:+32142421 None:intergenic
CCTAGAGAGGAGCACACGCC+CGG 0.504897 6_1:-32141124 Msa0882740:three_prime_UTR
GGTGGTGGAAGTGGACATGT+TGG 0.509514 6_1:-32145240 Msa0882740:CDS
CGGAGAAAATTCGCGGCGAA+TGG 0.510160 6_1:-32145264 Msa0882740:CDS
AAAATAAGCTCAATTCAAAC+GGG 0.514667 6_1:-32145718 None:intergenic
ACATAAGCACTGGTGTTAGC+AGG 0.516290 6_1:+32141358 None:intergenic
ATTACATAACTTTCGAGGGT+CGG 0.518875 6_1:+32141080 None:intergenic
TAGCAAAATAGTGTAAACTA+GGG 0.523939 6_1:+32145406 None:intergenic
TTCGCGGCGAATGGTGGTGG+TGG 0.532323 6_1:-32145255 Msa0882740:CDS
GTGGAAGTGGACATGTTGGA+AGG 0.532401 6_1:-32145236 Msa0882740:CDS
TAAATTGAGGCTCCCGCTAG+TGG 0.533877 6_1:+32141219 None:intergenic
AAATTCGCGGCGAATGGTGG+TGG 0.538715 6_1:-32145258 Msa0882740:CDS
AAAACTTGGTATCCGGCTCA+AGG 0.539308 6_1:-32141273 Msa0882740:three_prime_UTR
ATCAAAACAACAAAGCAAAA+GGG 0.539615 6_1:-32145472 Msa0882740:CDS
AAGGACCACCTTTGTAACTC+TGG 0.547659 6_1:+32143149 None:intergenic
CAATCCCTCTGTCCACTAGC+GGG 0.548252 6_1:-32141231 Msa0882740:three_prime_UTR
CTTAAAATCCTTATCAGGAG+AGG 0.549400 6_1:+32143211 None:intergenic
CCAACCATTCCTCATGAAGC+TGG 0.551456 6_1:+32141485 None:intergenic
CTAAGGCTTAGATCAGATTG+AGG 0.554833 6_1:+32143086 None:intergenic
GTAAAGAGCCAATAACTATG+AGG 0.560124 6_1:-32141399 Msa0882740:CDS
TAATATTACATAACTTTCGA+GGG 0.560855 6_1:+32141076 None:intergenic
GTGCCAACAATTCCTGTGTA+GGG 0.563230 6_1:+32141168 None:intergenic
GGTGGTGAAAGTTTGGGACC+GGG 0.566603 6_1:+32141106 None:intergenic
ATTGGAAGCTTTATTAAATG+CGG 0.567595 6_1:-32142358 Msa0882740:CDS
AGAAAATTCGCGGCGAATGG+TGG 0.568701 6_1:-32145261 Msa0882740:CDS
GGCCAATCGGAGAAAATTCG+CGG 0.568938 6_1:-32145271 Msa0882740:CDS
GAATCAGTTGATCCTTGAGC+CGG 0.570358 6_1:+32141261 None:intergenic
ATGTCCAGCTTCATGAGGAA+TGG 0.570918 6_1:-32141489 Msa0882740:CDS
TAAGGCTTAGATCAGATTGA+GGG 0.575211 6_1:+32143087 None:intergenic
TGTGCCAACAATTCCTGTGT+AGG 0.575261 6_1:+32141167 None:intergenic
CACAGGAATTGTTGGCACAT+GGG 0.581873 6_1:-32141163 Msa0882740:three_prime_UTR
GATGAAGGGTTGAAGTTGCA+AGG 0.585393 6_1:+32145570 None:intergenic
TCAAGGATCAACTGATTCGA+GGG 0.586082 6_1:-32141256 Msa0882740:three_prime_UTR
CAGTCTTCCAACCAAAACTA+GGG 0.592426 6_1:+32142409 None:intergenic
GGCTCCCGCTAGTGGACAGA+GGG 0.595767 6_1:+32141227 None:intergenic
ACACAGGAATTGTTGGCACA+TGG 0.597801 6_1:-32141164 Msa0882740:three_prime_UTR
CCAGCTTCATGAGGAATGGT+TGG 0.597873 6_1:-32141485 Msa0882740:CDS
GCGGCTGCAGTAAGGACTGT+GGG 0.598553 6_1:-32142339 Msa0882740:CDS
CTTCTATAGAAATTACTGCT+CGG 0.600686 6_1:-32140857 Msa0882740:three_prime_UTR
ATGAAGGGTTGAAGTTGCAA+GGG 0.622590 6_1:+32145571 None:intergenic
TGCCTATGCCAGAGTTACAA+AGG 0.623345 6_1:-32143157 Msa0882740:CDS
CACCTTTGTAACTCTGGCAT+AGG 0.628814 6_1:+32143155 None:intergenic
CGTAAATGTCCAGCTTCATG+AGG 0.633394 6_1:-32141494 Msa0882740:CDS
GTAATCAGCGTACTTTGTAA+GGG 0.637392 6_1:+32142296 None:intergenic
TGTGGGAAGACCATATGCAC+AGG 0.637529 6_1:-32142322 Msa0882740:CDS
TGTATGGACTGTCCCTACAC+AGG 0.637590 6_1:-32141180 Msa0882740:three_prime_UTR
ATTATAGGTGATGAAGTTGA+CGG 0.640020 6_1:-32142456 Msa0882740:CDS
TTCTTCCAAATATTTGAACA+AGG 0.649342 6_1:+32141423 None:intergenic
TGCGGCTGCAGTAAGGACTG+TGG 0.651747 6_1:-32142340 Msa0882740:CDS
CCAATCCCTCTGTCCACTAG+CGG 0.664374 6_1:-32141232 Msa0882740:three_prime_UTR
AGGCTCCCGCTAGTGGACAG+AGG 0.669705 6_1:+32141226 None:intergenic
TTCAAACCTGAGACCTAGAG+AGG 0.674521 6_1:-32141137 Msa0882740:three_prime_UTR
TCTCAAGAAAGGGTTTCGAG+TGG 0.684508 6_1:-32143240 Msa0882740:CDS
CTATGCCAGAGTTACAAAGG+TGG 0.722875 6_1:-32143154 Msa0882740:CDS
AGTACGCTGATTACTTACGC+CGG 0.724477 6_1:-32142287 Msa0882740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATATATTATATAGTAA+TGG + chr6_1:32143528-32143547 None:intergenic 10.0%
!! ATATAATATATATTGAAAAC+TGG - chr6_1:32143533-32143552 Msa0882740:intron 10.0%
!!! ACTTTTTATCTAATTTATAT+CGG - chr6_1:32143889-32143908 Msa0882740:intron 10.0%
!! TATAAATATATCAGAAAAAT+AGG + chr6_1:32144972-32144991 None:intergenic 10.0%
!!! ATTTATTTATTTTGAAAACT+TGG - chr6_1:32145219-32145238 Msa0882740:CDS 10.0%
!! ATTATAAATATAGACTAAAA+AGG - chr6_1:32145492-32145511 Msa0882740:CDS 10.0%
!!! AATCTTTGTTTTATAGATTT+TGG + chr6_1:32140815-32140834 None:intergenic 15.0%
!!! TTAAAATTGTGATTTTGTAT+AGG - chr6_1:32141484-32141503 Msa0882740:CDS 15.0%
!!! TTTTAAAGTGAATGAAATTT+TGG + chr6_1:32142948-32142967 None:intergenic 15.0%
!! TTGGCATAAATATAAATTAA+TGG + chr6_1:32143496-32143515 None:intergenic 15.0%
!! GATAAATTTATAGAAGAAAA+TGG - chr6_1:32143665-32143684 Msa0882740:intron 15.0%
!! TTAAAACTTATTCAAAAACA+TGG - chr6_1:32144122-32144141 Msa0882740:intron 15.0%
!! ATTATCGTTAAGTAAAATAT+TGG - chr6_1:32144640-32144659 Msa0882740:intron 15.0%
!!! TGTTTTTGAAATTTTCTTGA+AGG + chr6_1:32140988-32141007 None:intergenic 20.0%
!!! CTTTTAGTGTCTAAAAAAAA+TGG - chr6_1:32142148-32142167 Msa0882740:intron 20.0%
!! ATTGAATTCTGTGATTTAAA+AGG - chr6_1:32142270-32142289 Msa0882740:CDS 20.0%
!!! ATGTACATTTGATTTACTTA+AGG - chr6_1:32142665-32142684 Msa0882740:intron 20.0%
!!! TGTACATTTGATTTACTTAA+GGG - chr6_1:32142666-32142685 Msa0882740:intron 20.0%
!! TATAAATGATTAACTAGTTC+TGG - chr6_1:32143083-32143102 Msa0882740:intron 20.0%
!! ATGACTAAATGAAATCATAT+AGG - chr6_1:32143185-32143204 Msa0882740:CDS 20.0%
!! ATATAGGTTATAAAAGTTGA+TGG - chr6_1:32143201-32143220 Msa0882740:CDS 20.0%
!! AGCTTGAGAAATTAATAAAT+TGG + chr6_1:32143571-32143590 None:intergenic 20.0%
!! TAAAAAGTTAAAGAAGAGAA+TGG + chr6_1:32143877-32143896 None:intergenic 20.0%
!!! ACACTTTGATATACTAATTT+TGG - chr6_1:32144848-32144867 Msa0882740:intron 20.0%
!! AATATATCAGAAAAATAGGA+TGG + chr6_1:32144968-32144987 None:intergenic 20.0%
!! ATAGAAATCAAATTAGTGTT+GGG - chr6_1:32145182-32145201 Msa0882740:intron 20.0%
!! TAATATTACATAACTTTCGA+GGG + chr6_1:32145433-32145452 None:intergenic 20.0%
!! GAAAGTTATGTAATATTAGT+AGG - chr6_1:32145435-32145454 Msa0882740:CDS 20.0%
!! AATATAGACTAAAAAGGAAA+AGG - chr6_1:32145498-32145517 Msa0882740:CDS 20.0%
!! ATATAGACTAAAAAGGAAAA+GGG - chr6_1:32145499-32145518 Msa0882740:CDS 20.0%
! AATCAAAACAACAAAGCAAA+AGG - chr6_1:32141033-32141052 Msa0882740:three_prime_UTR 25.0%
! ATCAAAACAACAAAGCAAAA+GGG - chr6_1:32141034-32141053 Msa0882740:three_prime_UTR 25.0%
! TTTGTTCCTTCATAACATAA+AGG + chr6_1:32141080-32141099 None:intergenic 25.0%
! TAGCAAAATAGTGTAAACTA+GGG + chr6_1:32141103-32141122 None:intergenic 25.0%
! TTAGCAAAATAGTGTAAACT+AGG + chr6_1:32141104-32141123 None:intergenic 25.0%
!! GTTTACACTATTTTGCTAAA+TGG - chr6_1:32141105-32141124 Msa0882740:three_prime_UTR 25.0%
! TAACAATGATAATAACTCAC+AGG + chr6_1:32141338-32141357 None:intergenic 25.0%
! TCAAAATTTGAATGCATGTT+TGG - chr6_1:32141424-32141443 Msa0882740:CDS 25.0%
! CAAAATTTGAATGCATGTTT+GGG - chr6_1:32141425-32141444 Msa0882740:CDS 25.0%
! AAAATTTGAATGCATGTTTG+GGG - chr6_1:32141426-32141445 Msa0882740:CDS 25.0%
! TTATAAGCGTTTATGATATG+AGG - chr6_1:32141716-32141735 Msa0882740:intron 25.0%
! TTACAATGGCTAAAAATTGT+GGG + chr6_1:32142013-32142032 None:intergenic 25.0%
! ATTACAATGGCTAAAAATTG+TGG + chr6_1:32142014-32142033 None:intergenic 25.0%
!!! ACAATTTTTAGCCATTGTAA+TGG - chr6_1:32142013-32142032 Msa0882740:intron 25.0%
! AATCATGAATGTTTGTACAA+AGG - chr6_1:32142039-32142058 Msa0882740:intron 25.0%
! TAGTGTCTAAAAAAAATGGA+TGG - chr6_1:32142152-32142171 Msa0882740:intron 25.0%
!!! AGTCAAAAATGTTAGCTTTT+GGG + chr6_1:32142242-32142261 None:intergenic 25.0%
!!! AAGTCAAAAATGTTAGCTTT+TGG + chr6_1:32142243-32142262 None:intergenic 25.0%
!!! TCTTAATCATGCTACTTTAT+AGG - chr6_1:32142300-32142319 Msa0882740:CDS 25.0%
! ATTAGACTATGTCTAACTAT+AGG - chr6_1:32142529-32142548 Msa0882740:intron 25.0%
!!! AGCTCATGAATTTCTTTTTT+GGG + chr6_1:32142597-32142616 None:intergenic 25.0%
!!! TAGCTCATGAATTTCTTTTT+TGG + chr6_1:32142598-32142617 None:intergenic 25.0%
! TTTAGTAGTCAAATTAGAGT+TGG + chr6_1:32142785-32142804 None:intergenic 25.0%
!! ATATGATTTTGTGTGTTGAA+TGG - chr6_1:32143008-32143027 Msa0882740:intron 25.0%
! ATAGGTAAATTTCGTTGTAA+TGG - chr6_1:32143110-32143129 Msa0882740:CDS 25.0%
! CATTTAGTCATAATGAATGA+TGG + chr6_1:32143176-32143195 None:intergenic 25.0%
! GATATATCATATACTCACTA+AGG + chr6_1:32143440-32143459 None:intergenic 25.0%
!!! ATAGTAATGGACATTTATGT+TGG + chr6_1:32143515-32143534 None:intergenic 25.0%
! ATATATTGAAAACTGGTACA+TGG - chr6_1:32143540-32143559 Msa0882740:intron 25.0%
! TTGACTAGTAAACTAAAACA+CGG + chr6_1:32143971-32143990 None:intergenic 25.0%
! AATTGTGTAGGATGTATTAT+AGG - chr6_1:32144035-32144054 Msa0882740:intron 25.0%
! TATTCAAAAACATGGTTCAT+TGG - chr6_1:32144130-32144149 Msa0882740:intron 25.0%
!!! ATTGGAAGCTTTATTAAATG+CGG - chr6_1:32144148-32144167 Msa0882740:intron 25.0%
!! CATGTTTTGTCTTAAAACTT+AGG - chr6_1:32144375-32144394 Msa0882740:intron 25.0%
!! TTTTGTCTTAAAACTTAGGT+TGG - chr6_1:32144379-32144398 Msa0882740:intron 25.0%
! AGTAATCATATCTTTACTTG+TGG - chr6_1:32144881-32144900 Msa0882740:intron 25.0%
! TTATATGATTGAAATCTGAC+AGG - chr6_1:32144987-32145006 Msa0882740:intron 25.0%
! TATATGATTGAAATCTGACA+GGG - chr6_1:32144988-32145007 Msa0882740:intron 25.0%
! ATCTACCTTGTTCAAATATT+TGG - chr6_1:32145078-32145097 Msa0882740:intron 25.0%
! TTCTTCCAAATATTTGAACA+AGG + chr6_1:32145086-32145105 None:intergenic 25.0%
! ACAAAATTCCTCATAGTTAT+TGG + chr6_1:32145118-32145137 None:intergenic 25.0%
!! TGAGGAATTTTGTTAGTAAT+AGG - chr6_1:32145125-32145144 Msa0882740:intron 25.0%
! CATAGAAATCAAATTAGTGT+TGG - chr6_1:32145181-32145200 Msa0882740:intron 25.0%
!!! TATTTTGAAAACTTGGTATC+CGG - chr6_1:32145226-32145245 Msa0882740:CDS 25.0%
! CTAATATTACATAACTTTCG+AGG + chr6_1:32145434-32145453 None:intergenic 25.0%
! GTTCATTGATAAAGAATAAC+AGG - chr6_1:32145686-32145705 Msa0882740:five_prime_UTR 25.0%
!!! ACAAAGATTGTTTGTTTTGC+TGG - chr6_1:32140826-32140845 Msa0882740:three_prime_UTR 30.0%
TTTCATCATCTTCTTCTCTA+TGG + chr6_1:32140880-32140899 None:intergenic 30.0%
! ATGATGATGATGATGATGAA+GGG + chr6_1:32140953-32140972 None:intergenic 30.0%
GTGAATCCTTTATGTTATGA+AGG - chr6_1:32141071-32141090 Msa0882740:three_prime_UTR 30.0%
TGTAAGTTGTTTATCCAAAC+AGG - chr6_1:32141744-32141763 Msa0882740:intron 30.0%
GTAAGTTGTTTATCCAAACA+GGG - chr6_1:32141745-32141764 Msa0882740:intron 30.0%
TCATGATTAGACCATTACAA+TGG + chr6_1:32142027-32142046 None:intergenic 30.0%
!!! AAAGGATGTTTTGATGTTGT+CGG - chr6_1:32142057-32142076 Msa0882740:intron 30.0%
AAAAAAATGGATGGCAAGAT+TGG - chr6_1:32142161-32142180 Msa0882740:intron 30.0%
!! TTTTGGGTCAGAAATAAAAC+TGG + chr6_1:32142226-32142245 None:intergenic 30.0%
TAGAAGGCTTAAGTCATTAA+CGG + chr6_1:32142412-32142431 None:intergenic 30.0%
! TACTTGAATTAGCTTATCCA+TGG + chr6_1:32142450-32142469 None:intergenic 30.0%
!!! TTTCTTTTTTGGGAAGGATT+AGG + chr6_1:32142587-32142606 None:intergenic 30.0%
!!! CATGAATTTCTTTTTTGGGA+AGG + chr6_1:32142593-32142612 None:intergenic 30.0%
! TTAAGGGTAGTTCTATTTCA+TGG - chr6_1:32142682-32142701 Msa0882740:intron 30.0%
ACTAAAAAATCAACACGCAA+TGG - chr6_1:32142799-32142818 Msa0882740:intron 30.0%
! AACAGAAATAAAAGAAGTGC+TGG + chr6_1:32142899-32142918 None:intergenic 30.0%
!! TTAACTAGTTCTGGAAGAAT+AGG - chr6_1:32143092-32143111 Msa0882740:CDS 30.0%
AGTTGCTTAAAATCCTTATC+AGG + chr6_1:32143303-32143322 None:intergenic 30.0%
! GATTATATGTAATGGGAAAG+AGG + chr6_1:32143770-32143789 None:intergenic 30.0%
GATGAGGGATTATATGTAAT+GGG + chr6_1:32143777-32143796 None:intergenic 30.0%
AGATGAGGGATTATATGTAA+TGG + chr6_1:32143778-32143797 None:intergenic 30.0%
GTCATATTATAGAAAGGGTT+GGG + chr6_1:32143949-32143968 None:intergenic 30.0%
ACACGGTCATATTATAGAAA+GGG + chr6_1:32143954-32143973 None:intergenic 30.0%
AACACGGTCATATTATAGAA+AGG + chr6_1:32143955-32143974 None:intergenic 30.0%
!!! GTTTTAGTTTACTAGTCAAG+TGG - chr6_1:32143972-32143991 Msa0882740:intron 30.0%
TATGTATGCTGTAATTGTGT+AGG - chr6_1:32144023-32144042 Msa0882740:intron 30.0%
ATTATAGGTGATGAAGTTGA+CGG - chr6_1:32144050-32144069 Msa0882740:intron 30.0%
! CAAACATCAATACCTTTTCA+AGG + chr6_1:32144261-32144280 None:intergenic 30.0%
TGTAAAGATGTGAATACATG+AGG + chr6_1:32144299-32144318 None:intergenic 30.0%
CAAATAACTGGTTGTAATTG+AGG - chr6_1:32144326-32144345 Msa0882740:intron 30.0%
AAAACCAACCTATAAGGTAT+AGG - chr6_1:32144419-32144438 Msa0882740:intron 30.0%
ACACTACACAACTTTATAAG+TGG + chr6_1:32144451-32144470 None:intergenic 30.0%
ACTTATAAAGTTGTGTAGTG+TGG - chr6_1:32144450-32144469 Msa0882740:intron 30.0%
ATCCATACATTTCTACTAGT+GGG - chr6_1:32144552-32144571 Msa0882740:intron 30.0%
AACGTGTCATCATATTTCAA+TGG - chr6_1:32144697-32144716 Msa0882740:intron 30.0%
TGAACATGACTTTATAAGTG+GGG + chr6_1:32144783-32144802 None:intergenic 30.0%
CTGAACATGACTTTATAAGT+GGG + chr6_1:32144784-32144803 None:intergenic 30.0%
TCTGAACATGACTTTATAAG+TGG + chr6_1:32144785-32144804 None:intergenic 30.0%
! GCATTGAGTATTTTGTATGT+TGG - chr6_1:32145525-32145544 Msa0882740:CDS 30.0%
! TGAGTATTTTGTATGTTGGT+TGG - chr6_1:32145529-32145548 Msa0882740:CDS 30.0%
!! ATTTTGTATGTTGGTTGGTT+TGG - chr6_1:32145534-32145553 Msa0882740:CDS 30.0%
!!! TTTTGTATGTTGGTTGGTTT+GGG - chr6_1:32145535-32145554 Msa0882740:CDS 30.0%
CTTCTATAGAAATTACTGCT+CGG - chr6_1:32145649-32145668 Msa0882740:five_prime_UTR 30.0%
!!! TTGTTTGTTTTGCTGGAGAT+AGG - chr6_1:32140833-32140852 Msa0882740:three_prime_UTR 35.0%
! GATGATGATGATGATGATGA+AGG + chr6_1:32140954-32140973 None:intergenic 35.0%
CCATCAAAAACAGCTATAAC+AGG + chr6_1:32141170-32141189 None:intergenic 35.0%
!!! CCTGTTATAGCTGTTTTTGA+TGG - chr6_1:32141167-32141186 Msa0882740:three_prime_UTR 35.0%
!!! CTGTTTTTGATGGTGAAAGA+GGG - chr6_1:32141177-32141196 Msa0882740:three_prime_UTR 35.0%
GAAGTTGCTTCCTTCTTATA+AGG - chr6_1:32141214-32141233 Msa0882740:three_prime_UTR 35.0%
TTCCTTCTTATAAGGCCAAT+CGG - chr6_1:32141222-32141241 Msa0882740:three_prime_UTR 35.0%
!!! TCATGAGTTGTTTTTGCTTG+TGG - chr6_1:32141582-32141601 Msa0882740:intron 35.0%
! GCAATTTTCATAAGCTATCC+TGG + chr6_1:32141614-32141633 None:intergenic 35.0%
TAAGCGTTTATGATATGAGG+TGG - chr6_1:32141719-32141738 Msa0882740:intron 35.0%
TGTAATACAAAGACCCTGTT+TGG + chr6_1:32141761-32141780 None:intergenic 35.0%
ACAGGGTCTTTGTATTACAA+AGG - chr6_1:32141762-32141781 Msa0882740:intron 35.0%
CAGGGTCTTTGTATTACAAA+GGG - chr6_1:32141763-32141782 Msa0882740:intron 35.0%
TGTATTACAAAGGGAGTGAA+AGG - chr6_1:32141772-32141791 Msa0882740:intron 35.0%
GAGGATGAGAATTGTGAAAT+GGG - chr6_1:32141794-32141813 Msa0882740:intron 35.0%
TTGTAGGATATTGTGGGATT+GGG - chr6_1:32141917-32141936 Msa0882740:intron 35.0%
TCTGTTTGTTCATACCCAAT+TGG - chr6_1:32142102-32142121 Msa0882740:intron 35.0%
! TCTGAGCTTTGATACCAATT+GGG + chr6_1:32142119-32142138 None:intergenic 35.0%
! ATCTGAGCTTTGATACCAAT+TGG + chr6_1:32142120-32142139 None:intergenic 35.0%
GATTGGAAAAGATACGAGTT+AGG - chr6_1:32142178-32142197 Msa0882740:intron 35.0%
TCCACGATGTATGCATTTAT+AGG - chr6_1:32142366-32142385 Msa0882740:CDS 35.0%
ACCTATAAATGCATACATCG+TGG + chr6_1:32142370-32142389 None:intergenic 35.0%
TGTCATGGTTTGATGAATAG+AGG + chr6_1:32142477-32142496 None:intergenic 35.0%
!! AGCTTATGGAAAAAGTGTCA+TGG + chr6_1:32142492-32142511 None:intergenic 35.0%
GAAGCTTATCTTCATCAAGT+TGG - chr6_1:32142706-32142725 Msa0882740:intron 35.0%
! CAAACTTTCCTTTTTCCTCA+TGG - chr6_1:32142741-32142760 Msa0882740:intron 35.0%
!! TGTGTCTGAAGTTTTAACCA+TGG - chr6_1:32142919-32142938 Msa0882740:intron 35.0%
TCTGAACAAGTTCTCAAGAA+AGG - chr6_1:32143255-32143274 Msa0882740:CDS 35.0%
CTGAACAAGTTCTCAAGAAA+GGG - chr6_1:32143256-32143275 Msa0882740:CDS 35.0%
CTTAAAATCCTTATCAGGAG+AGG + chr6_1:32143298-32143317 None:intergenic 35.0%
TAAGGCTTAGATCAGATTGA+GGG + chr6_1:32143422-32143441 None:intergenic 35.0%
!! TTCTAGTTCATTATGCAGCA+AGG + chr6_1:32143623-32143642 None:intergenic 35.0%
TGTAGTAGTCTGATAGAAAC+TGG - chr6_1:32143643-32143662 Msa0882740:intron 35.0%
! ATGTAATGGGAAAGAGGAAT+TGG + chr6_1:32143764-32143783 None:intergenic 35.0%
TAGTTAGGGTTATGAGATGA+GGG + chr6_1:32143792-32143811 None:intergenic 35.0%
TTAGTTAGGGTTATGAGATG+AGG + chr6_1:32143793-32143812 None:intergenic 35.0%
TCTCATAACCCTAACTAACT+TGG - chr6_1:32143795-32143814 Msa0882740:intron 35.0%
CTGTATGTATTCGAGAGATT+CGG + chr6_1:32143828-32143847 None:intergenic 35.0%
GGTCATATTATAGAAAGGGT+TGG + chr6_1:32143950-32143969 None:intergenic 35.0%
GTAATCAGCGTACTTTGTAA+GGG + chr6_1:32144213-32144232 None:intergenic 35.0%
AGTAATCAGCGTACTTTGTA+AGG + chr6_1:32144214-32144233 None:intergenic 35.0%
ATGAAGTTCTTGCCTTGAAA+AGG - chr6_1:32144246-32144265 Msa0882740:intron 35.0%
! TTACACTTGCTGCAAATAAC+TGG - chr6_1:32144314-32144333 Msa0882740:intron 35.0%
!!! TGGTTTTGTACGATTGAGTT+AGG + chr6_1:32144406-32144425 None:intergenic 35.0%
TCGTACAAAACCAACCTATA+AGG - chr6_1:32144413-32144432 Msa0882740:intron 35.0%
CTACACAACTTTATAAGTGG+AGG + chr6_1:32144448-32144467 None:intergenic 35.0%
ATGTTCAATCTTAGGTGTGA+CGG + chr6_1:32144492-32144511 None:intergenic 35.0%
CACACCTAAGATTGAACATA+TGG - chr6_1:32144493-32144512 Msa0882740:intron 35.0%
CACTCCATATGTTCAATCTT+AGG + chr6_1:32144500-32144519 None:intergenic 35.0%
GATCCATACATTTCTACTAG+TGG - chr6_1:32144551-32144570 Msa0882740:intron 35.0%
TCCATACATTTCTACTAGTG+GGG - chr6_1:32144553-32144572 Msa0882740:intron 35.0%
GTAAAGAGCCAATAACTATG+AGG - chr6_1:32145107-32145126 Msa0882740:intron 35.0%
CTTCTTTCTAACATAAGCAC+TGG + chr6_1:32145161-32145180 None:intergenic 35.0%
CTTTGCTCTGACTTAAATTG+AGG + chr6_1:32145303-32145322 None:intergenic 35.0%
ATTACATAACTTTCGAGGGT+CGG + chr6_1:32145429-32145448 None:intergenic 35.0%
TAGACTAAAAAGGAAAAGGG+AGG - chr6_1:32145502-32145521 Msa0882740:CDS 35.0%
AGACTAAAAAGGAAAAGGGA+GGG - chr6_1:32145503-32145522 Msa0882740:CDS 35.0%
GCTATCTAATTCCTAGAAGT+TGG - chr6_1:32145567-32145586 Msa0882740:CDS 35.0%
CGAGAAATAAACCAACTTCT+AGG + chr6_1:32145581-32145600 None:intergenic 35.0%
ATGAAGGGTTGAAGTTGCAA+GGG + chr6_1:32140938-32140957 None:intergenic 40.0%
!!! GCTGTTTTTGATGGTGAAAG+AGG - chr6_1:32141176-32141195 Msa0882740:three_prime_UTR 40.0%
AAAGAGGGAGTGAGTATAGA+AGG - chr6_1:32141192-32141211 Msa0882740:three_prime_UTR 40.0%
! GGACATGTTGGAAGGTTTTA+TGG - chr6_1:32141278-32141297 Msa0882740:three_prime_UTR 40.0%
TTGAATGCATGTTTGGGGAT+TGG - chr6_1:32141431-32141450 Msa0882740:CDS 40.0%
! TTTTGCTTGTGGAAAACTCC+AGG - chr6_1:32141593-32141612 Msa0882740:intron 40.0%
ATTACAAAGGGAGTGAAAGG+AGG - chr6_1:32141775-32141794 Msa0882740:intron 40.0%
GGAGGATGAGAATTGTGAAA+TGG - chr6_1:32141793-32141812 Msa0882740:intron 40.0%
TGGTGCTTGTAGGATATTGT+GGG - chr6_1:32141911-32141930 Msa0882740:intron 40.0%
CTTGTAGGATATTGTGGGAT+TGG - chr6_1:32141916-32141935 Msa0882740:intron 40.0%
ATATTGTGGGATTGGGTACT+GGG - chr6_1:32141924-32141943 Msa0882740:intron 40.0%
! AGAGCATCTGCTACTAAGAT+GGG + chr6_1:32141958-32141977 None:intergenic 40.0%
!! AAGAGCATCTGCTACTAAGA+TGG + chr6_1:32141959-32141978 None:intergenic 40.0%
AAAATTGTGGGAGACAAGTG+TGG + chr6_1:32142001-32142020 None:intergenic 40.0%
GGGTATGAACAAACAGAAGT+TGG + chr6_1:32142099-32142118 None:intergenic 40.0%
GGTATCAAAGCTCAGATCTT+TGG - chr6_1:32142123-32142142 Msa0882740:intron 40.0%
ACTTAAGCCTTCTACTAACC+AGG - chr6_1:32142418-32142437 Msa0882740:CDS 40.0%
GTAGTAACCTGGTTAGTAGA+AGG + chr6_1:32142428-32142447 None:intergenic 40.0%
TACTAACCAGGTTACTACCA+TGG - chr6_1:32142430-32142449 Msa0882740:CDS 40.0%
TTAGAGCTAGTTGCAGCTTA+TGG + chr6_1:32142506-32142525 None:intergenic 40.0%
TAGACGTTCCATGAGGAAAA+AGG + chr6_1:32142752-32142771 None:intergenic 40.0%
AGTTGAATAGACGTTCCATG+AGG + chr6_1:32142759-32142778 None:intergenic 40.0%
! GAATGAAATTTTGGACGCCA+TGG + chr6_1:32142939-32142958 None:intergenic 40.0%
!! ACTACTGATTTGGTGACAAC+TGG + chr6_1:32142972-32142991 None:intergenic 40.0%
! ACAAGCTGTCACTACTGATT+TGG + chr6_1:32142982-32143001 None:intergenic 40.0%
ATTCCAGAACAAAGCAAGCA+CGG + chr6_1:32143039-32143058 None:intergenic 40.0%
CTACAACATCATCAGCTTCA+TGG + chr6_1:32143227-32143246 None:intergenic 40.0%
CTAAGGCTTAGATCAGATTG+AGG + chr6_1:32143423-32143442 None:intergenic 40.0%
! CTCAAAGTATTCGAGAAACC+CGG - chr6_1:32143694-32143713 Msa0882740:intron 40.0%
AAATTCGAGTGAGATAGCAC+CGG + chr6_1:32143716-32143735 None:intergenic 40.0%
GTGCTCTACCAAGTTAGTTA+GGG + chr6_1:32143806-32143825 None:intergenic 40.0%
CAGTCTTCCAACCAAAACTA+GGG + chr6_1:32144100-32144119 None:intergenic 40.0%
TATTAAATGCGGCTGCAGTA+AGG - chr6_1:32144159-32144178 Msa0882740:intron 40.0%
AGGCAAGAACTTCATAGTTC+CGG + chr6_1:32144241-32144260 None:intergenic 40.0%
GATGTGAATACATGAGGCAA+AGG + chr6_1:32144293-32144312 None:intergenic 40.0%
CCATACATTTCTACTAGTGG+GGG - chr6_1:32144554-32144573 Msa0882740:intron 40.0%
!! TCCTACAAAACCGACTTGTA+TGG - chr6_1:32144748-32144767 Msa0882740:intron 40.0%
!! ACCATACAAGTCGGTTTTGT+AGG + chr6_1:32144752-32144771 None:intergenic 40.0%
!! TACAAAACCGACTTGTATGG+TGG - chr6_1:32144751-32144770 Msa0882740:intron 40.0%
!! ACAAAACCGACTTGTATGGT+GGG - chr6_1:32144752-32144771 Msa0882740:intron 40.0%
AGGATGGCTGAGTATAAGTT+GGG + chr6_1:32144952-32144971 None:intergenic 40.0%
TAGGATGGCTGAGTATAAGT+TGG + chr6_1:32144953-32144972 None:intergenic 40.0%
!! TCAAGGATCAACTGATTCGA+GGG - chr6_1:32145250-32145269 Msa0882740:CDS 40.0%
AGTCAGAGCAAAGCTATGTA+TGG - chr6_1:32145310-32145329 Msa0882740:CDS 40.0%
GATGAAGGGTTGAAGTTGCA+AGG + chr6_1:32140939-32140958 None:intergenic 45.0%
!! CTCCGATTGGCCTTATAAGA+AGG + chr6_1:32141227-32141246 None:intergenic 45.0%
AATGCATGTTTGGGGATTGG+AGG - chr6_1:32141434-32141453 Msa0882740:CDS 45.0%
ATGTTTGGGGATTGGAGGAT+TGG - chr6_1:32141439-32141458 Msa0882740:CDS 45.0%
TGTTTGGGGATTGGAGGATT+GGG - chr6_1:32141440-32141459 Msa0882740:CDS 45.0%
! ATGCCCTCTATCAGAAGTGT+CGG + chr6_1:32141831-32141850 None:intergenic 45.0%
GACATCGACACATGTTGTGT+CGG - chr6_1:32141866-32141885 Msa0882740:intron 45.0%
ACATCGACACATGTTGTGTC+GGG - chr6_1:32141867-32141886 Msa0882740:intron 45.0%
GTGGTGCTTGTAGGATATTG+TGG - chr6_1:32141910-32141929 Msa0882740:intron 45.0%
GATATTGTGGGATTGGGTAC+TGG - chr6_1:32141923-32141942 Msa0882740:intron 45.0%
! TATTGTGGGATTGGGTACTG+GGG - chr6_1:32141925-32141944 Msa0882740:intron 45.0%
AATGCATACATCGTGGACTC+TGG + chr6_1:32142363-32142382 None:intergenic 45.0%
GCTTATCCATGGTAGTAACC+TGG + chr6_1:32142439-32142458 None:intergenic 45.0%
TCTCAAGAAAGGGTTTCGAG+TGG - chr6_1:32143266-32143285 Msa0882740:CDS 45.0%
TGCCTATGCCAGAGTTACAA+AGG - chr6_1:32143349-32143368 Msa0882740:intron 45.0%
CACCTTTGTAACTCTGGCAT+AGG + chr6_1:32143354-32143373 None:intergenic 45.0%
CTATGCCAGAGTTACAAAGG+TGG - chr6_1:32143352-32143371 Msa0882740:intron 45.0%
AAGGACCACCTTTGTAACTC+TGG + chr6_1:32143360-32143379 None:intergenic 45.0%
GTAATGTCTCGCAGTGTAGA+AGG + chr6_1:32143379-32143398 None:intergenic 45.0%
AATTCGAGTGAGATAGCACC+GGG + chr6_1:32143715-32143734 None:intergenic 45.0%
TGGAGAGGTTATCTTCAACG+AGG + chr6_1:32143744-32143763 None:intergenic 45.0%
ATGGGAAAGAGGAATTGGAG+AGG + chr6_1:32143759-32143778 None:intergenic 45.0%
GGTGCTCTACCAAGTTAGTT+AGG + chr6_1:32143807-32143826 None:intergenic 45.0%
CAAAACTAGGGACGAGATGT+TGG + chr6_1:32144088-32144107 None:intergenic 45.0%
! CAACATCTCGTCCCTAGTTT+TGG - chr6_1:32144086-32144105 Msa0882740:intron 45.0%
!!! ATCTCGTCCCTAGTTTTGGT+TGG - chr6_1:32144090-32144109 Msa0882740:intron 45.0%
GCAGTCTTCCAACCAAAACT+AGG + chr6_1:32144101-32144120 None:intergenic 45.0%
! AGTACGCTGATTACTTACGC+CGG - chr6_1:32144219-32144238 Msa0882740:intron 45.0%
GCAGCCTATACCTTATAGGT+TGG + chr6_1:32144426-32144445 None:intergenic 45.0%
CCCCCACTAGTAGAAATGTA+TGG + chr6_1:32144557-32144576 None:intergenic 45.0%
CATCAACACGCGAACGATAA+AGG - chr6_1:32144612-32144631 Msa0882740:intron 45.0%
CGTAAATGTCCAGCTTCATG+AGG - chr6_1:32145012-32145031 Msa0882740:intron 45.0%
ATGTCCAGCTTCATGAGGAA+TGG - chr6_1:32145017-32145036 Msa0882740:intron 45.0%
!! ACATAAGCACTGGTGTTAGC+AGG + chr6_1:32145151-32145170 None:intergenic 45.0%
AAAACTTGGTATCCGGCTCA+AGG - chr6_1:32145233-32145252 Msa0882740:CDS 45.0%
GAATCAGTTGATCCTTGAGC+CGG + chr6_1:32145248-32145267 None:intergenic 45.0%
!! CTCAAGGATCAACTGATTCG+AGG - chr6_1:32145249-32145268 Msa0882740:CDS 45.0%
TGTCCCTACACAGGAATTGT+TGG - chr6_1:32145335-32145354 Msa0882740:CDS 45.0%
GTGCCAACAATTCCTGTGTA+GGG + chr6_1:32145341-32145360 None:intergenic 45.0%
TGTGCCAACAATTCCTGTGT+AGG + chr6_1:32145342-32145361 None:intergenic 45.0%
ACACAGGAATTGTTGGCACA+TGG - chr6_1:32145342-32145361 Msa0882740:CDS 45.0%
CACAGGAATTGTTGGCACAT+GGG - chr6_1:32145343-32145362 Msa0882740:CDS 45.0%
TTCAAACCTGAGACCTAGAG+AGG - chr6_1:32145369-32145388 Msa0882740:CDS 45.0%
CAGGTAACAGAACCAGTTTC+TGG - chr6_1:32145705-32145724 Msa0882740:five_prime_UTR 45.0%
!!! TTTTTATATATTTTTTTTGT+TGG - chr6_1:32141377-32141396 Msa0882740:CDS 5.0%
!!! TTTTATATATTTTTTTTGTT+GGG - chr6_1:32141378-32141397 Msa0882740:CDS 5.0%
!! TTTATTCTATTATTATTAAA+TGG - chr6_1:32145461-32145480 Msa0882740:CDS 5.0%
GGCCAATCGGAGAAAATTCG+CGG - chr6_1:32141235-32141254 Msa0882740:three_prime_UTR 50.0%
AGAAAATTCGCGGCGAATGG+TGG - chr6_1:32141245-32141264 Msa0882740:three_prime_UTR 50.0%
GTGGAAGTGGACATGTTGGA+AGG - chr6_1:32141270-32141289 Msa0882740:three_prime_UTR 50.0%
GTTTGGGGATTGGAGGATTG+GGG - chr6_1:32141441-32141460 Msa0882740:CDS 50.0%
CACCCGACACTTCTGATAGA+GGG - chr6_1:32141825-32141844 Msa0882740:intron 50.0%
!! TGCCCTCTATCAGAAGTGTC+GGG + chr6_1:32141830-32141849 None:intergenic 50.0%
! ATAGAGGGCATGCCTGGTAT+CGG - chr6_1:32141840-32141859 Msa0882740:intron 50.0%
TCGGGTGTTAGTGTCTGTGA+CGG - chr6_1:32141885-32141904 Msa0882740:intron 50.0%
!! ATTGTGGGATTGGGTACTGG+GGG - chr6_1:32141926-32141945 Msa0882740:intron 50.0%
! TAGCCGTGCTTGCTTTGTTC+TGG - chr6_1:32143033-32143052 Msa0882740:intron 50.0%
GGTGATTGCCTCTCCTGATA+AGG - chr6_1:32143287-32143306 Msa0882740:CDS 50.0%
GATGAAGTTGACGGTGTTCC+TGG - chr6_1:32144059-32144078 Msa0882740:intron 50.0%
TGTGGGAAGACCATATGCAC+AGG - chr6_1:32144184-32144203 Msa0882740:intron 50.0%
!! GTAAGGGCATCCTGTGCATA+TGG + chr6_1:32144197-32144216 None:intergenic 50.0%
GGAGGCAGCCTATACCTTAT+AGG + chr6_1:32144430-32144449 None:intergenic 50.0%
!! AGGTGTGACGGATGTGTGTT+AGG + chr6_1:32144480-32144499 None:intergenic 50.0%
CTGCTACTATGAGACCACTC+GGG + chr6_1:32144526-32144545 None:intergenic 50.0%
GCTGCTACTATGAGACCACT+CGG + chr6_1:32144527-32144546 None:intergenic 50.0%
TGGTCTCATAGTAGCAGCGA+CGG - chr6_1:32144529-32144548 Msa0882740:intron 50.0%
GCAGTTCCCACCATACAAGT+CGG + chr6_1:32144761-32144780 None:intergenic 50.0%
CCAACCATTCCTCATGAAGC+TGG + chr6_1:32145024-32145043 None:intergenic 50.0%
CCAGCTTCATGAGGAATGGT+TGG - chr6_1:32145021-32145040 Msa0882740:intron 50.0%
TAAATTGAGGCTCCCGCTAG+TGG + chr6_1:32145290-32145309 None:intergenic 50.0%
! TGTATGGACTGTCCCTACAC+AGG - chr6_1:32145326-32145345 Msa0882740:CDS 50.0%
! TGGTGGTGAAAGTTTGGGAC+CGG + chr6_1:32145404-32145423 None:intergenic 50.0%
!! CGGCTTGGTGGTGAAAGTTT+GGG + chr6_1:32145409-32145428 None:intergenic 50.0%
!! TCGGCTTGGTGGTGAAAGTT+TGG + chr6_1:32145410-32145429 None:intergenic 50.0%
ATAACTTTCGAGGGTCGGCT+TGG + chr6_1:32145424-32145443 None:intergenic 50.0%
! CGCCGCGAATTTTCTCCGAT+TGG + chr6_1:32141240-32141259 None:intergenic 55.0%
CGGAGAAAATTCGCGGCGAA+TGG - chr6_1:32141242-32141261 Msa0882740:three_prime_UTR 55.0%
AAATTCGCGGCGAATGGTGG+TGG - chr6_1:32141248-32141267 Msa0882740:three_prime_UTR 55.0%
!! GGTGGTGGAAGTGGACATGT+TGG - chr6_1:32141266-32141285 Msa0882740:three_prime_UTR 55.0%
GCACCCGACACTTCTGATAG+AGG - chr6_1:32141824-32141843 Msa0882740:intron 55.0%
! CTTCTGATAGAGGGCATGCC+TGG - chr6_1:32141834-32141853 Msa0882740:intron 55.0%
GTCGATGTCATGCCGATACC+AGG + chr6_1:32141855-32141874 None:intergenic 55.0%
GTTAGTGTCTGTGACGGTCG+TGG - chr6_1:32141891-32141910 Msa0882740:intron 55.0%
!! TTGTGGGATTGGGTACTGGG+GGG - chr6_1:32141927-32141946 Msa0882740:intron 55.0%
GGGACGAGATGTTGGATACC+AGG + chr6_1:32144080-32144099 None:intergenic 55.0%
CATATGGAGTGAGACCCGAG+TGG - chr6_1:32144509-32144528 Msa0882740:intron 55.0%
CCAATCCCTCTGTCCACTAG+CGG - chr6_1:32145274-32145293 Msa0882740:CDS 55.0%
CAATCCCTCTGTCCACTAGC+GGG - chr6_1:32145275-32145294 Msa0882740:CDS 55.0%
TGTGCTCCTCTCTAGGTCTC+AGG + chr6_1:32145378-32145397 None:intergenic 55.0%
! GGTGGTGAAAGTTTGGGACC+GGG + chr6_1:32145403-32145422 None:intergenic 55.0%
!! GCGAATGGTGGTGGTGGAAG+TGG - chr6_1:32141257-32141276 Msa0882740:three_prime_UTR 60.0%
GTGACGGTCGTGGTGCTTGT+AGG - chr6_1:32141901-32141920 Msa0882740:intron 60.0%
TGCGGCTGCAGTAAGGACTG+TGG - chr6_1:32144166-32144185 Msa0882740:intron 60.0%
GCGGCTGCAGTAAGGACTGT+GGG - chr6_1:32144167-32144186 Msa0882740:intron 60.0%
! CCGCTAGTGGACAGAGGGAT+TGG + chr6_1:32145277-32145296 None:intergenic 60.0%
!! ACTTTCGAGGGTCGGCTTGG+TGG + chr6_1:32145421-32145440 None:intergenic 60.0%
!! TTCGCGGCGAATGGTGGTGG+TGG - chr6_1:32141251-32141270 Msa0882740:three_prime_UTR 65.0%
! GGCTCCCGCTAGTGGACAGA+GGG + chr6_1:32145282-32145301 None:intergenic 65.0%
! AGGCTCCCGCTAGTGGACAG+AGG + chr6_1:32145283-32145302 None:intergenic 65.0%
! CCTAGAGAGGAGCACACGCC+CGG - chr6_1:32145382-32145401 Msa0882740:CDS 65.0%
CCGGGCGTGTGCTCCTCTCT+AGG + chr6_1:32145385-32145404 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 32140800 32145728 32140800 ID=Msa0882740;Name=Msa0882740
chr6_1 mRNA 32140800 32145728 32140800 ID=Msa0882740-mRNA-1;Parent=Msa0882740;Name=Msa0882740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=91|1|1|1|1|1|4|509|371
chr6_1 exon 32140800 32141519 32140800 ID=Msa0882740-mRNA-1:exon:8032;Parent=Msa0882740-mRNA-1
chr6_1 exon 32142261 32142483 32142261 ID=Msa0882740-mRNA-1:exon:8031;Parent=Msa0882740-mRNA-1
chr6_1 exon 32143087 32143321 32143087 ID=Msa0882740-mRNA-1:exon:8030;Parent=Msa0882740-mRNA-1
chr6_1 exon 32145191 32145728 32145191 ID=Msa0882740-mRNA-1:exon:8029;Parent=Msa0882740-mRNA-1
chr6_1 five_prime_UTR 32145638 32145728 32145638 ID=Msa0882740-mRNA-1:five_prime_utr;Parent=Msa0882740-mRNA-1
chr6_1 CDS 32145191 32145637 32145191 ID=Msa0882740-mRNA-1:cds;Parent=Msa0882740-mRNA-1
chr6_1 CDS 32143087 32143321 32143087 ID=Msa0882740-mRNA-1:cds;Parent=Msa0882740-mRNA-1
chr6_1 CDS 32142261 32142483 32142261 ID=Msa0882740-mRNA-1:cds;Parent=Msa0882740-mRNA-1
chr6_1 CDS 32141309 32141519 32141309 ID=Msa0882740-mRNA-1:cds;Parent=Msa0882740-mRNA-1
chr6_1 three_prime_UTR 32140800 32141308 32140800 ID=Msa0882740-mRNA-1:three_prime_utr;Parent=Msa0882740-mRNA-1
Gene Sequence

>Msa0882740

ATGATGAAAACATTATCATCATCACATGCTTTCAATTTCATTCACCCTTGCAACTTCAACCCTTCATCATCATCATCATCATCTTCTTCAGTATCCTTCAAGAAAATTTCAAAAACAACATCACTACAAAAACTGAACACAGAATCAAAACAACAAAGCAAAAGGGTATTCTTTTTAGACGTGAATCCTTTATGTTATGAAGGAACAAACCCTAGTTTACACTATTTTGCTAAATGGCTGAAACTTTTTCTATCTCATCAAGTTACTCAATCTCATCCTGTTATAGCTGTTTTTGATGGTGAAAGAGGGAGTGAGTATAGAAGGAAGTTGCTTCCTTCTTATAAGGCCAATCGGAGAAAATTCGCGGCGAATGGTGGTGGTGGAAGTGGACATGTTGGAAGGTTTTATGGTGTTATCAGTGATGTTCTTCGACAATGCAATGTTCCTGTTATAAAAGTTGATGGCCATGAAGCTGATGATGTTGTAGCTACACTTTCTGAACAAGTTCTCAAGAAAGGGTTTCGAGTGGTGATTGCCTCTCCTGATAAGGATTTTAAGCAACTTATTTCTGACAATGTGCAAATAGTCATGCCTATGCCAGAGTTACAAAGGTGGTCCTTCTACACTGCGAGACATTACAGAGATCAGTATAATTGCGACCCTCAATCTGATCTAAGCCTTAGATGTATTATAGGTGATGAAGTTGACGGTGTTCCTGGTATCCAACATCTCGTCCCTAGTTTTGGTTGGAAGACTGCTTTAAAACTTATTCAAAAACATGGTTCATTGGAAGCTTTATTAAATGCGGCTGCAGTAAGGACTGTGGGAAGACCATATGCACAGGATGCCCTTACAAAGTACGCTGATTACTTACGCCGGAACTATGAAGTTCTTGCCTTGAAAAGGGACGTAAATGTCCAGCTTCATGAGGAATGGTTGGTTGATAGAGACACTCACAATGATACTATTGCACTATCTACCTTGTTCAAATATTTGGAAGAAAGTAAAGAGCCAATAACTATGAGGAATTTTGTTAGTAATAGGCCTGCTAACACCAGTGCTTATGTTAGAAAGAAGCATAGAAATCAAATTAGTGTTGGGACAGATGTTATGTAA
Protein sequence

>Msa0882740

MMKTLSSSHAFNFIHPCNFNPSSSSSSSSSVSFKKISKTTSLQKLNTESKQQSKRVFFLDVNPLCYEGTNPSLHYFAKWLKLFLSHQVTQSHPVIAVFDGERGSEYRRKLLPSYKANRRKFAANGGGGSGHVGRFYGVISDVLRQCNVPVIKVDGHEADDVVATLSEQVLKKGFRVVIASPDKDFKQLISDNVQIVMPMPELQRWSFYTARHYRDQYNCDPQSDLSLRCIIGDEVDGVPGIQHLVPSFGWKTALKLIQKHGSLEALLNAAAVRTVGRPYAQDALTKYADYLRRNYEVLALKRDVNVQLHEEWLVDRDTHNDTIALSTLFKYLEESKEPITMRNFVSNRPANTSAYVRKKHRNQISVGTDVM*