AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349640 MtrunA17_Chr5g0397331 97.175 354 10 0 1 354 1 354 0.0 721
Msa1349640 MtrunA17_Chr1g0191411 53.257 261 118 3 82 340 5 263 2.50e-93 280
Msa1349640 MtrunA17_Chr7g0273211 50.916 273 126 4 82 350 37 305 1.58e-89 271
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349640 AT3G05170.1 55.263 266 111 4 82 343 9 270 5.47e-96 288
Msa1349640 AT1G08940.1 52.893 242 108 2 82 319 9 248 5.06e-88 266

Find 86 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTTGTGAGGCCTATTT+TGG 0.129826 tig0010967:-71455 None:intergenic
AAAGCGCAACGCCATCTTTA+TGG 0.148714 tig0010967:+71830 Msa1349640:CDS
ATTATATTGCTACAAATTTA+TGG 0.157611 tig0010967:-73070 None:intergenic
TTCGAGGGTCTCAACAATTT+TGG 0.181594 tig0010967:+72487 Msa1349640:CDS
CTAACAAGAATTATTCTTCT+AGG 0.216607 tig0010967:-71376 None:intergenic
CAACCATGAATTCTGACTTT+TGG 0.241973 tig0010967:+71064 None:intergenic
TTCTTATGAGATGGTATAAA+TGG 0.250801 tig0010967:+72452 Msa1349640:CDS
GCAAACAGAAGCCAACAAAA+AGG 0.310141 tig0010967:+73029 Msa1349640:CDS
GTTTCAAGAGTCCTTCTATA+TGG 0.322885 tig0010967:-71571 None:intergenic
GAACAAGAGTTAAGACAGTT+TGG 0.341634 tig0010967:+72794 Msa1349640:CDS
AAAACGATGGTGATGAAAAT+TGG 0.343036 tig0010967:+71527 Msa1349640:CDS
TTTGAACGTTCAAGAATTGC+TGG 0.343872 tig0010967:+71616 Msa1349640:CDS
CAGATTCACCATTTGGAAAT+CGG 0.366998 tig0010967:-71865 None:intergenic
CGGATTAGAGAACAAGATTT+CGG 0.376273 tig0010967:+71655 Msa1349640:CDS
CTAAGAGCAGATATTAATAT+TGG 0.377004 tig0010967:+72352 Msa1349640:CDS
AGAATTATTCTTCTAGGCCT+TGG 0.386052 tig0010967:-71370 None:intergenic
TTTATGTGTCTCCATATAGA+AGG 0.387162 tig0010967:+71560 Msa1349640:CDS
TCAGCCGCAGATTCACCATT+TGG 0.423620 tig0010967:-71872 None:intergenic
AGGGTACCTGATCCCAAAAT+AGG 0.433029 tig0010967:+71442 Msa1349640:CDS
AGAATAATTCGACTTAGTGT+TGG 0.442612 tig0010967:-71197 None:intergenic
GAATAATTCGACTTAGTGTT+GGG 0.449186 tig0010967:-71196 None:intergenic
CAATATAATGCTCGATGCAT+TGG 0.458377 tig0010967:+73084 Msa1349640:three_prime_UTR
CAACGTTGGAGGCTAGTAAA+GGG 0.458660 tig0010967:-71336 None:intergenic
AGGCGAGCTTGTCATGGAAA+AGG 0.462117 tig0010967:+72516 Msa1349640:CDS
AAAATAGGCCTCACAAATAG+AGG 0.464701 tig0010967:+71457 Msa1349640:CDS
AATTTCAATCATTGTTGTGT+AGG 0.468569 tig0010967:+73257 Msa1349640:three_prime_UTR
TGAGAGTGGTAGTGATGTTA+TGG 0.472388 tig0010967:-71143 None:intergenic
TTGTTGGTTAGTGAATCTAC+AGG 0.473287 tig0010967:-71271 None:intergenic
CCTGGTACGTCCATTGTTGT+TGG 0.484419 tig0010967:-71287 None:intergenic
CACATCAAAATTCTTCTCCC+CGG 0.485925 tig0010967:-72389 None:intergenic
AGCAATTCTTGAACGTTCAA+AGG 0.486540 tig0010967:-71614 None:intergenic
CAGTCGTAATTCAGATCAGC+AGG 0.495868 tig0010967:-72966 None:intergenic
TTCATGAAGATGAGGAAAGA+AGG 0.501116 tig0010967:-73003 None:intergenic
ACATCAAAATTCTTCTCCCC+GGG 0.506903 tig0010967:-72388 None:intergenic
CTTGTCATGGAAAAGGGTTA+TGG 0.507893 tig0010967:+72523 Msa1349640:CDS
GCAATTCTTGAACGTTCAAA+GGG 0.518725 tig0010967:-71613 None:intergenic
ATTATTCTTCTAGGCCTTGG+AGG 0.521959 tig0010967:-71367 None:intergenic
GGCGAGCTTGTCATGGAAAA+GGG 0.526104 tig0010967:+72517 Msa1349640:CDS
TCAACGTTGGAGGCTAGTAA+AGG 0.527993 tig0010967:-71337 None:intergenic
CAATGGAGGCGAGCTTGTCA+TGG 0.534795 tig0010967:+72510 Msa1349640:CDS
AAAAGAAACGACCATAAAGA+TGG 0.541482 tig0010967:-71841 None:intergenic
TTTGCTTCTTCATGAAGATG+AGG 0.541787 tig0010967:-73011 None:intergenic
CCAACAACAATGGACGTACC+AGG 0.544308 tig0010967:+71287 Msa1349640:CDS
TTATATTAATCACCATGCTA+AGG 0.547846 tig0010967:+73307 Msa1349640:three_prime_UTR
TAGGCCTCACAAATAGAGGT+AGG 0.550075 tig0010967:+71461 Msa1349640:CDS
TAGAGGTAGGGTTCAAGCAG+AGG 0.554848 tig0010967:+71474 Msa1349640:CDS
AGGTACTACATCAACGTTGG+AGG 0.554951 tig0010967:-71347 None:intergenic
AAATGCTGATTGATCAAGAA+TGG 0.556731 tig0010967:+72828 Msa1349640:CDS
CACTATTAAAATCCTTAGCA+TGG 0.559516 tig0010967:-73319 None:intergenic
GATGTATACGATAGAATCAC+AGG 0.560616 tig0010967:+71893 Msa1349640:CDS
CTGGATTCAGAGAAGAGCCT+CGG 0.566562 tig0010967:+71635 Msa1349640:CDS
TGGAAAAGGGTTATGGTGGA+AGG 0.567955 tig0010967:+72530 Msa1349640:CDS
TGTGAAGGCATAAATTTGCA+AGG 0.571714 tig0010967:+72943 Msa1349640:intron
ATGGACGGTTGAACAATTCG+AGG 0.572004 tig0010967:+72471 Msa1349640:CDS
GAACCCTACCTCTATTTGTG+AGG 0.573197 tig0010967:-71465 None:intergenic
AGAATAATTCTTGTTAGACA+TGG 0.574414 tig0010967:+71382 Msa1349640:CDS
GGAAAGAAGGAATTCACCAT+TGG 0.584379 tig0010967:-72990 None:intergenic
TTAGACATGGAGAGAGTGAA+GGG 0.586434 tig0010967:+71395 Msa1349640:CDS
TGTTGGTTAGTGAATCTACA+GGG 0.593467 tig0010967:-71270 None:intergenic
AACTTGGTCATCGTGTCACA+TGG 0.596674 tig0010967:+72412 Msa1349640:CDS
AGGCCTCACAAATAGAGGTA+GGG 0.600664 tig0010967:+71462 Msa1349640:CDS
GTTAGACATGGAGAGAGTGA+AGG 0.602338 tig0010967:+71394 Msa1349640:CDS
TATGAGATGGTATAAATGGA+CGG 0.602499 tig0010967:+72456 Msa1349640:CDS
TCAAAATTCTTCTCCCCGGG+TGG 0.603303 tig0010967:-72385 None:intergenic
ATTGGACGGTATCAGCCACC+CGG 0.616558 tig0010967:+72370 Msa1349640:CDS
GCTAGTAAAGGGTTTATCAG+AGG 0.616669 tig0010967:-71325 None:intergenic
AGGGTTCAAGCAGAGGAATG+TGG 0.617736 tig0010967:+71481 Msa1349640:CDS
TGGAGAGAGTGAAGGGAACG+TGG 0.618176 tig0010967:+71402 Msa1349640:CDS
TTGGACGGTATCAGCCACCC+GGG 0.618733 tig0010967:+72371 Msa1349640:CDS
GTCATGGAAAAGGGTTATGG+TGG 0.622098 tig0010967:+72526 Msa1349640:CDS
GATTCACTAACCAACAACAA+TGG 0.627276 tig0010967:+71277 Msa1349640:CDS
GAGCAGATATTAATATTGGA+CGG 0.627676 tig0010967:+72356 Msa1349640:CDS
TGGAGGTACTACATCAACGT+TGG 0.645433 tig0010967:-71350 None:intergenic
TATCATCATCATCATGAATG+TGG 0.646416 tig0010967:+73218 Msa1349640:three_prime_UTR
AATGCTCGATGCATTGGCGA+CGG 0.648828 tig0010967:+73090 Msa1349640:three_prime_UTR
ACGTTGATGTAGTACCTCCA+AGG 0.654374 tig0010967:+71353 Msa1349640:CDS
AAATCTTGTTCTCTAATCCG+AGG 0.657767 tig0010967:-71652 None:intergenic
ATTTCCAAATGGTGAATCTG+CGG 0.660166 tig0010967:+71868 Msa1349640:CDS
ATATTGCTACAAATTTATGG+CGG 0.663837 tig0010967:-73067 None:intergenic
TGGATGAGAGTGTTTACACA+AGG 0.666652 tig0010967:+71422 Msa1349640:CDS
TGGACGGTTGAACAATTCGA+GGG 0.667400 tig0010967:+72472 Msa1349640:CDS
AAGAACATGATTGAAAACGA+TGG 0.668419 tig0010967:+71514 Msa1349640:CDS
TCTGAATTACGACTGTCCAA+TGG 0.669531 tig0010967:+72974 Msa1349640:CDS
TTCTGTTGAGATACTGAGAG+TGG 0.675907 tig0010967:-71157 None:intergenic
TGGACGGTATCAGCCACCCG+GGG 0.707455 tig0010967:+72372 Msa1349640:CDS
GGATGAGAGTGTTTACACAA+GGG 0.722988 tig0010967:+71423 Msa1349640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACATACTCTTTATTTAA+CGG - tig0010967:71985-72004 None:intergenic 15.0%
!!! TTTTCATCATTTGTAAATTA+AGG + tig0010967:72719-72738 Msa1349640:intron 15.0%
!!! TTATATACTGATTTATATGA+TGG + tig0010967:72914-72933 Msa1349640:intron 15.0%
!! ATTATATTGCTACAAATTTA+TGG - tig0010967:73073-73092 None:intergenic 15.0%
!!! TTTACATACTCTTTATTTAA+CGG - tig0010967:71985-72004 None:intergenic 15.0%
!!! TTTTCATCATTTGTAAATTA+AGG + tig0010967:72719-72738 Msa1349640:intron 15.0%
!!! TTATATACTGATTTATATGA+TGG + tig0010967:72914-72933 Msa1349640:intron 15.0%
!! ATTATATTGCTACAAATTTA+TGG - tig0010967:73073-73092 None:intergenic 15.0%
!! AATTGCATTCAAAAATATCA+TGG + tig0010967:71114-71133 Msa1349640:exon 20.0%
!! ATTGCATTCAAAAATATCAT+GGG + tig0010967:71115-71134 Msa1349640:exon 20.0%
!! TTTGTGATTTATGTTATGTA+AGG + tig0010967:71773-71792 Msa1349640:intron 20.0%
!! TTGTGATTTATGTTATGTAA+GGG + tig0010967:71774-71793 Msa1349640:intron 20.0%
!! TTCATATATATACTATCTTG+CGG + tig0010967:72077-72096 Msa1349640:intron 20.0%
!!! AATAATGGAGTTTATAAAGT+CGG - tig0010967:72148-72167 None:intergenic 20.0%
!! TATGATTAACAATCTAATGT+TGG + tig0010967:72296-72315 Msa1349640:intron 20.0%
!! AGAAACTATGAGTAATAATT+AGG - tig0010967:72872-72891 None:intergenic 20.0%
!! TTGTAACATAAACAGAAAAA+AGG + tig0010967:73125-73144 Msa1349640:three_prime_UTR 20.0%
!! AATTGCATTCAAAAATATCA+TGG + tig0010967:71114-71133 Msa1349640:exon 20.0%
!! ATTGCATTCAAAAATATCAT+GGG + tig0010967:71115-71134 Msa1349640:exon 20.0%
!! TTTGTGATTTATGTTATGTA+AGG + tig0010967:71773-71792 Msa1349640:intron 20.0%
!! TTGTGATTTATGTTATGTAA+GGG + tig0010967:71774-71793 Msa1349640:intron 20.0%
!! TTCATATATATACTATCTTG+CGG + tig0010967:72077-72096 Msa1349640:intron 20.0%
!!! AATAATGGAGTTTATAAAGT+CGG - tig0010967:72148-72167 None:intergenic 20.0%
!! TATGATTAACAATCTAATGT+TGG + tig0010967:72296-72315 Msa1349640:intron 20.0%
!! AGAAACTATGAGTAATAATT+AGG - tig0010967:72872-72891 None:intergenic 20.0%
!! TTGTAACATAAACAGAAAAA+AGG + tig0010967:73125-73144 Msa1349640:three_prime_UTR 20.0%
! CTAACAAGAATTATTCTTCT+AGG - tig0010967:71379-71398 None:intergenic 25.0%
! AGAATAATTCTTGTTAGACA+TGG + tig0010967:71382-71401 Msa1349640:CDS 25.0%
!! TAGTTTTCTGTCTTGTATAT+TGG + tig0010967:71723-71742 Msa1349640:intron 25.0%
! GTAAAGTTAATCAACTGATT+AGG + tig0010967:72000-72019 Msa1349640:intron 25.0%
!!! TATATGAAGCTTGTTGAAAA+TGG - tig0010967:72065-72084 None:intergenic 25.0%
! TCATCGGTCATATTTAATAA+TGG - tig0010967:72163-72182 None:intergenic 25.0%
! TGGATTTGATATTGATACAT+AGG + tig0010967:72316-72335 Msa1349640:intron 25.0%
! CTAAGAGCAGATATTAATAT+TGG + tig0010967:72352-72371 Msa1349640:CDS 25.0%
!! TTAGAGTTTTTCTTATGAGA+TGG + tig0010967:72443-72462 Msa1349640:CDS 25.0%
! TTCTTATGAGATGGTATAAA+TGG + tig0010967:72452-72471 Msa1349640:CDS 25.0%
! TTCCACATTACAAATTTAAC+AGG + tig0010967:72747-72766 Msa1349640:intron 25.0%
! TACCTGTTAAATTTGTAATG+TGG - tig0010967:72752-72771 None:intergenic 25.0%
! ATATTGCTACAAATTTATGG+CGG - tig0010967:73070-73089 None:intergenic 25.0%
! AATTTCAATCATTGTTGTGT+AGG + tig0010967:73257-73276 Msa1349640:three_prime_UTR 25.0%
! TTATATTAATCACCATGCTA+AGG + tig0010967:73307-73326 Msa1349640:three_prime_UTR 25.0%
! CTAACAAGAATTATTCTTCT+AGG - tig0010967:71379-71398 None:intergenic 25.0%
! AGAATAATTCTTGTTAGACA+TGG + tig0010967:71382-71401 Msa1349640:CDS 25.0%
!! TAGTTTTCTGTCTTGTATAT+TGG + tig0010967:71723-71742 Msa1349640:intron 25.0%
! GTAAAGTTAATCAACTGATT+AGG + tig0010967:72000-72019 Msa1349640:intron 25.0%
!!! TATATGAAGCTTGTTGAAAA+TGG - tig0010967:72065-72084 None:intergenic 25.0%
! TCATCGGTCATATTTAATAA+TGG - tig0010967:72163-72182 None:intergenic 25.0%
! TGGATTTGATATTGATACAT+AGG + tig0010967:72316-72335 Msa1349640:intron 25.0%
! CTAAGAGCAGATATTAATAT+TGG + tig0010967:72352-72371 Msa1349640:CDS 25.0%
!! TTAGAGTTTTTCTTATGAGA+TGG + tig0010967:72443-72462 Msa1349640:CDS 25.0%
! TTCTTATGAGATGGTATAAA+TGG + tig0010967:72452-72471 Msa1349640:CDS 25.0%
! TTCCACATTACAAATTTAAC+AGG + tig0010967:72747-72766 Msa1349640:intron 25.0%
! TACCTGTTAAATTTGTAATG+TGG - tig0010967:72752-72771 None:intergenic 25.0%
! ATATTGCTACAAATTTATGG+CGG - tig0010967:73070-73089 None:intergenic 25.0%
! AATTTCAATCATTGTTGTGT+AGG + tig0010967:73257-73276 Msa1349640:three_prime_UTR 25.0%
! TTATATTAATCACCATGCTA+AGG + tig0010967:73307-73326 Msa1349640:three_prime_UTR 25.0%
GAATAATTCGACTTAGTGTT+GGG - tig0010967:71199-71218 None:intergenic 30.0%
AGAATAATTCGACTTAGTGT+TGG - tig0010967:71200-71219 None:intergenic 30.0%
! TTTATCAGAGGATTTTTCTC+TGG - tig0010967:71316-71335 None:intergenic 30.0%
AAGAACATGATTGAAAACGA+TGG + tig0010967:71514-71533 Msa1349640:CDS 30.0%
! AAAACGATGGTGATGAAAAT+TGG + tig0010967:71527-71546 Msa1349640:CDS 30.0%
TTTATGTGTCTCCATATAGA+AGG + tig0010967:71560-71579 Msa1349640:CDS 30.0%
ACAAGACAGAAAACTAAACT+AGG - tig0010967:71719-71738 None:intergenic 30.0%
AAAAGAAACGACCATAAAGA+TGG - tig0010967:71844-71863 None:intergenic 30.0%
!!! TTCTTTTACCGATTTCCAAA+TGG + tig0010967:71857-71876 Msa1349640:CDS 30.0%
GTCGGTTATTATTGTTAGTT+CGG - tig0010967:72130-72149 None:intergenic 30.0%
TGACTATAATTGAGGTTCAT+CGG - tig0010967:72179-72198 None:intergenic 30.0%
TAAATAAAAGTCTGCGATCA+AGG - tig0010967:72251-72270 None:intergenic 30.0%
GAGCAGATATTAATATTGGA+CGG + tig0010967:72356-72375 Msa1349640:CDS 30.0%
!! GAAGAATTTTGATGTGAACT+TGG + tig0010967:72396-72415 Msa1349640:CDS 30.0%
TATGAGATGGTATAAATGGA+CGG + tig0010967:72456-72475 Msa1349640:CDS 30.0%
! AAATGCTGATTGATCAAGAA+TGG + tig0010967:72828-72847 Msa1349640:CDS 30.0%
ATATGATGGTCAATTTGTGA+AGG + tig0010967:72928-72947 Msa1349640:intron 30.0%
TATCATCATCATCATGAATG+TGG + tig0010967:73218-73237 Msa1349640:three_prime_UTR 30.0%
GAATAATTCGACTTAGTGTT+GGG - tig0010967:71199-71218 None:intergenic 30.0%
AGAATAATTCGACTTAGTGT+TGG - tig0010967:71200-71219 None:intergenic 30.0%
! TTTATCAGAGGATTTTTCTC+TGG - tig0010967:71316-71335 None:intergenic 30.0%
AAGAACATGATTGAAAACGA+TGG + tig0010967:71514-71533 Msa1349640:CDS 30.0%
! AAAACGATGGTGATGAAAAT+TGG + tig0010967:71527-71546 Msa1349640:CDS 30.0%
TTTATGTGTCTCCATATAGA+AGG + tig0010967:71560-71579 Msa1349640:CDS 30.0%
ACAAGACAGAAAACTAAACT+AGG - tig0010967:71719-71738 None:intergenic 30.0%
AAAAGAAACGACCATAAAGA+TGG - tig0010967:71844-71863 None:intergenic 30.0%
!!! TTCTTTTACCGATTTCCAAA+TGG + tig0010967:71857-71876 Msa1349640:CDS 30.0%
GTCGGTTATTATTGTTAGTT+CGG - tig0010967:72130-72149 None:intergenic 30.0%
TGACTATAATTGAGGTTCAT+CGG - tig0010967:72179-72198 None:intergenic 30.0%
TAAATAAAAGTCTGCGATCA+AGG - tig0010967:72251-72270 None:intergenic 30.0%
GAGCAGATATTAATATTGGA+CGG + tig0010967:72356-72375 Msa1349640:CDS 30.0%
!! GAAGAATTTTGATGTGAACT+TGG + tig0010967:72396-72415 Msa1349640:CDS 30.0%
TATGAGATGGTATAAATGGA+CGG + tig0010967:72456-72475 Msa1349640:CDS 30.0%
! AAATGCTGATTGATCAAGAA+TGG + tig0010967:72828-72847 Msa1349640:CDS 30.0%
ATATGATGGTCAATTTGTGA+AGG + tig0010967:72928-72947 Msa1349640:intron 30.0%
TATCATCATCATCATGAATG+TGG + tig0010967:73218-73237 Msa1349640:three_prime_UTR 30.0%
! TGTTGGTTAGTGAATCTACA+GGG - tig0010967:71273-71292 None:intergenic 35.0%
! TTGTTGGTTAGTGAATCTAC+AGG - tig0010967:71274-71293 None:intergenic 35.0%
GATTCACTAACCAACAACAA+TGG + tig0010967:71277-71296 Msa1349640:CDS 35.0%
AGAATTATTCTTCTAGGCCT+TGG - tig0010967:71373-71392 None:intergenic 35.0%
! CTATTTGTGAGGCCTATTTT+GGG - tig0010967:71457-71476 None:intergenic 35.0%
! TCTATTTGTGAGGCCTATTT+TGG - tig0010967:71458-71477 None:intergenic 35.0%
AAAATAGGCCTCACAAATAG+AGG + tig0010967:71457-71476 Msa1349640:CDS 35.0%
GTTTCAAGAGTCCTTCTATA+TGG - tig0010967:71574-71593 None:intergenic 35.0%
GCAATTCTTGAACGTTCAAA+GGG - tig0010967:71616-71635 None:intergenic 35.0%
AGCAATTCTTGAACGTTCAA+AGG - tig0010967:71617-71636 None:intergenic 35.0%
TTTGAACGTTCAAGAATTGC+TGG + tig0010967:71616-71635 Msa1349640:CDS 35.0%
AAATCTTGTTCTCTAATCCG+AGG - tig0010967:71655-71674 None:intergenic 35.0%
! CGGATTAGAGAACAAGATTT+CGG + tig0010967:71655-71674 Msa1349640:CDS 35.0%
CAGATTCACCATTTGGAAAT+CGG - tig0010967:71868-71887 None:intergenic 35.0%
ATTTCCAAATGGTGAATCTG+CGG + tig0010967:71868-71887 Msa1349640:CDS 35.0%
GATGTATACGATAGAATCAC+AGG + tig0010967:71893-71912 Msa1349640:CDS 35.0%
!! CAACTGATTAGGTTTGTTAG+AGG + tig0010967:72011-72030 Msa1349640:intron 35.0%
!! TAGGTTTGTTAGAGGTAGTT+AGG + tig0010967:72019-72038 Msa1349640:intron 35.0%
TTATTGTTAGTTCGGCTCAA+TGG - tig0010967:72122-72141 None:intergenic 35.0%
AAACATCAGTTGCTATAGAG+AGG - tig0010967:72573-72592 None:intergenic 35.0%
TCTCTATAGCAACTGATGTT+TGG + tig0010967:72572-72591 Msa1349640:intron 35.0%
GAACAAGAGTTAAGACAGTT+TGG + tig0010967:72794-72813 Msa1349640:CDS 35.0%
! TGTGAAGGCATAAATTTGCA+AGG + tig0010967:72943-72962 Msa1349640:intron 35.0%
TTCATGAAGATGAGGAAAGA+AGG - tig0010967:73006-73025 None:intergenic 35.0%
TTTGCTTCTTCATGAAGATG+AGG - tig0010967:73014-73033 None:intergenic 35.0%
CAAACAGAAGCCAACAAAAA+GGG + tig0010967:73030-73049 Msa1349640:CDS 35.0%
CAATATAATGCTCGATGCAT+TGG + tig0010967:73084-73103 Msa1349640:three_prime_UTR 35.0%
! TGTTGGTTAGTGAATCTACA+GGG - tig0010967:71273-71292 None:intergenic 35.0%
! TTGTTGGTTAGTGAATCTAC+AGG - tig0010967:71274-71293 None:intergenic 35.0%
GATTCACTAACCAACAACAA+TGG + tig0010967:71277-71296 Msa1349640:CDS 35.0%
AGAATTATTCTTCTAGGCCT+TGG - tig0010967:71373-71392 None:intergenic 35.0%
! CTATTTGTGAGGCCTATTTT+GGG - tig0010967:71457-71476 None:intergenic 35.0%
! TCTATTTGTGAGGCCTATTT+TGG - tig0010967:71458-71477 None:intergenic 35.0%
AAAATAGGCCTCACAAATAG+AGG + tig0010967:71457-71476 Msa1349640:CDS 35.0%
GTTTCAAGAGTCCTTCTATA+TGG - tig0010967:71574-71593 None:intergenic 35.0%
GCAATTCTTGAACGTTCAAA+GGG - tig0010967:71616-71635 None:intergenic 35.0%
AGCAATTCTTGAACGTTCAA+AGG - tig0010967:71617-71636 None:intergenic 35.0%
TTTGAACGTTCAAGAATTGC+TGG + tig0010967:71616-71635 Msa1349640:CDS 35.0%
AAATCTTGTTCTCTAATCCG+AGG - tig0010967:71655-71674 None:intergenic 35.0%
! CGGATTAGAGAACAAGATTT+CGG + tig0010967:71655-71674 Msa1349640:CDS 35.0%
CAGATTCACCATTTGGAAAT+CGG - tig0010967:71868-71887 None:intergenic 35.0%
ATTTCCAAATGGTGAATCTG+CGG + tig0010967:71868-71887 Msa1349640:CDS 35.0%
GATGTATACGATAGAATCAC+AGG + tig0010967:71893-71912 Msa1349640:CDS 35.0%
!! CAACTGATTAGGTTTGTTAG+AGG + tig0010967:72011-72030 Msa1349640:intron 35.0%
!! TAGGTTTGTTAGAGGTAGTT+AGG + tig0010967:72019-72038 Msa1349640:intron 35.0%
TTATTGTTAGTTCGGCTCAA+TGG - tig0010967:72122-72141 None:intergenic 35.0%
AAACATCAGTTGCTATAGAG+AGG - tig0010967:72573-72592 None:intergenic 35.0%
TCTCTATAGCAACTGATGTT+TGG + tig0010967:72572-72591 Msa1349640:intron 35.0%
GAACAAGAGTTAAGACAGTT+TGG + tig0010967:72794-72813 Msa1349640:CDS 35.0%
! TGTGAAGGCATAAATTTGCA+AGG + tig0010967:72943-72962 Msa1349640:intron 35.0%
TTCATGAAGATGAGGAAAGA+AGG - tig0010967:73006-73025 None:intergenic 35.0%
TTTGCTTCTTCATGAAGATG+AGG - tig0010967:73014-73033 None:intergenic 35.0%
CAAACAGAAGCCAACAAAAA+GGG + tig0010967:73030-73049 Msa1349640:CDS 35.0%
CAATATAATGCTCGATGCAT+TGG + tig0010967:73084-73103 Msa1349640:three_prime_UTR 35.0%
! TGAGAGTGGTAGTGATGTTA+TGG - tig0010967:71146-71165 None:intergenic 40.0%
TTCTGTTGAGATACTGAGAG+TGG - tig0010967:71160-71179 None:intergenic 40.0%
!!! CTTTTTGGCTGTGACAACAT+TGG - tig0010967:71249-71268 None:intergenic 40.0%
! GTGAATCTACAGGGTCTTTT+TGG - tig0010967:71264-71283 None:intergenic 40.0%
!! AGGATTTTTCTCTGGAAACC+TGG - tig0010967:71308-71327 None:intergenic 40.0%
GCTAGTAAAGGGTTTATCAG+AGG - tig0010967:71328-71347 None:intergenic 40.0%
ATTATTCTTCTAGGCCTTGG+AGG - tig0010967:71370-71389 None:intergenic 40.0%
TTAGACATGGAGAGAGTGAA+GGG + tig0010967:71395-71414 Msa1349640:CDS 40.0%
!! TGGATGAGAGTGTTTACACA+AGG + tig0010967:71422-71441 Msa1349640:CDS 40.0%
!! GGATGAGAGTGTTTACACAA+GGG + tig0010967:71423-71442 Msa1349640:CDS 40.0%
AACCTCAATTATAGTCACGC+TGG + tig0010967:72182-72201 Msa1349640:intron 40.0%
ACCTCAATTATAGTCACGCT+GGG + tig0010967:72183-72202 Msa1349640:intron 40.0%
ACATCAAAATTCTTCTCCCC+GGG - tig0010967:72391-72410 None:intergenic 40.0%
CACATCAAAATTCTTCTCCC+CGG - tig0010967:72392-72411 None:intergenic 40.0%
! TTCGAGGGTCTCAACAATTT+TGG + tig0010967:72487-72506 Msa1349640:CDS 40.0%
!! GGTCTCAACAATTTTGGCAA+TGG + tig0010967:72493-72512 Msa1349640:CDS 40.0%
!! CTCAACAATTTTGGCAATGG+AGG + tig0010967:72496-72515 Msa1349640:CDS 40.0%
CTTGTCATGGAAAAGGGTTA+TGG + tig0010967:72523-72542 Msa1349640:CDS 40.0%
AGCAACTGATGTTTGGTATC+TGG + tig0010967:72579-72598 Msa1349640:intron 40.0%
ATGTACACGACATTGATACG+TGG - tig0010967:72664-72683 None:intergenic 40.0%
TCTGAATTACGACTGTCCAA+TGG + tig0010967:72974-72993 Msa1349640:CDS 40.0%
GGAAAGAAGGAATTCACCAT+TGG - tig0010967:72993-73012 None:intergenic 40.0%
GCAAACAGAAGCCAACAAAA+AGG + tig0010967:73029-73048 Msa1349640:CDS 40.0%
! CGATTCACTACCCTTTTTGT+TGG - tig0010967:73043-73062 None:intergenic 40.0%
! TGAGAGTGGTAGTGATGTTA+TGG - tig0010967:71146-71165 None:intergenic 40.0%
TTCTGTTGAGATACTGAGAG+TGG - tig0010967:71160-71179 None:intergenic 40.0%
!!! CTTTTTGGCTGTGACAACAT+TGG - tig0010967:71249-71268 None:intergenic 40.0%
! GTGAATCTACAGGGTCTTTT+TGG - tig0010967:71264-71283 None:intergenic 40.0%
!! AGGATTTTTCTCTGGAAACC+TGG - tig0010967:71308-71327 None:intergenic 40.0%
GCTAGTAAAGGGTTTATCAG+AGG - tig0010967:71328-71347 None:intergenic 40.0%
ATTATTCTTCTAGGCCTTGG+AGG - tig0010967:71370-71389 None:intergenic 40.0%
TTAGACATGGAGAGAGTGAA+GGG + tig0010967:71395-71414 Msa1349640:CDS 40.0%
!! TGGATGAGAGTGTTTACACA+AGG + tig0010967:71422-71441 Msa1349640:CDS 40.0%
!! GGATGAGAGTGTTTACACAA+GGG + tig0010967:71423-71442 Msa1349640:CDS 40.0%
AACCTCAATTATAGTCACGC+TGG + tig0010967:72182-72201 Msa1349640:intron 40.0%
ACCTCAATTATAGTCACGCT+GGG + tig0010967:72183-72202 Msa1349640:intron 40.0%
ACATCAAAATTCTTCTCCCC+GGG - tig0010967:72391-72410 None:intergenic 40.0%
CACATCAAAATTCTTCTCCC+CGG - tig0010967:72392-72411 None:intergenic 40.0%
! TTCGAGGGTCTCAACAATTT+TGG + tig0010967:72487-72506 Msa1349640:CDS 40.0%
!! GGTCTCAACAATTTTGGCAA+TGG + tig0010967:72493-72512 Msa1349640:CDS 40.0%
!! CTCAACAATTTTGGCAATGG+AGG + tig0010967:72496-72515 Msa1349640:CDS 40.0%
CTTGTCATGGAAAAGGGTTA+TGG + tig0010967:72523-72542 Msa1349640:CDS 40.0%
AGCAACTGATGTTTGGTATC+TGG + tig0010967:72579-72598 Msa1349640:intron 40.0%
ATGTACACGACATTGATACG+TGG - tig0010967:72664-72683 None:intergenic 40.0%
TCTGAATTACGACTGTCCAA+TGG + tig0010967:72974-72993 Msa1349640:CDS 40.0%
GGAAAGAAGGAATTCACCAT+TGG - tig0010967:72993-73012 None:intergenic 40.0%
GCAAACAGAAGCCAACAAAA+AGG + tig0010967:73029-73048 Msa1349640:CDS 40.0%
! CGATTCACTACCCTTTTTGT+TGG - tig0010967:73043-73062 None:intergenic 40.0%
CAACGTTGGAGGCTAGTAAA+GGG - tig0010967:71339-71358 None:intergenic 45.0%
TCAACGTTGGAGGCTAGTAA+AGG - tig0010967:71340-71359 None:intergenic 45.0%
AGGTACTACATCAACGTTGG+AGG - tig0010967:71350-71369 None:intergenic 45.0%
!! TGGAGGTACTACATCAACGT+TGG - tig0010967:71353-71372 None:intergenic 45.0%
ACGTTGATGTAGTACCTCCA+AGG + tig0010967:71353-71372 Msa1349640:CDS 45.0%
GTTAGACATGGAGAGAGTGA+AGG + tig0010967:71394-71413 Msa1349640:CDS 45.0%
! AGGGTACCTGATCCCAAAAT+AGG + tig0010967:71442-71461 Msa1349640:CDS 45.0%
TAGGCCTCACAAATAGAGGT+AGG + tig0010967:71461-71480 Msa1349640:CDS 45.0%
AGGCCTCACAAATAGAGGTA+GGG + tig0010967:71462-71481 Msa1349640:CDS 45.0%
GAACCCTACCTCTATTTGTG+AGG - tig0010967:71468-71487 None:intergenic 45.0%
AAAGCGCAACGCCATCTTTA+TGG + tig0010967:71830-71849 Msa1349640:CDS 45.0%
GGCTCAATGGCAACTAAACA+TGG - tig0010967:72109-72128 None:intergenic 45.0%
CCTCAATTATAGTCACGCTG+GGG + tig0010967:72184-72203 Msa1349640:intron 45.0%
AACTTGGTCATCGTGTCACA+TGG + tig0010967:72412-72431 Msa1349640:CDS 45.0%
ATGGACGGTTGAACAATTCG+AGG + tig0010967:72471-72490 Msa1349640:CDS 45.0%
TGGACGGTTGAACAATTCGA+GGG + tig0010967:72472-72491 Msa1349640:CDS 45.0%
GTCATGGAAAAGGGTTATGG+TGG + tig0010967:72526-72545 Msa1349640:CDS 45.0%
! TGGAAAAGGGTTATGGTGGA+AGG + tig0010967:72530-72549 Msa1349640:CDS 45.0%
CAGTCGTAATTCAGATCAGC+AGG - tig0010967:72969-72988 None:intergenic 45.0%
CAACGTTGGAGGCTAGTAAA+GGG - tig0010967:71339-71358 None:intergenic 45.0%
TCAACGTTGGAGGCTAGTAA+AGG - tig0010967:71340-71359 None:intergenic 45.0%
AGGTACTACATCAACGTTGG+AGG - tig0010967:71350-71369 None:intergenic 45.0%
!! TGGAGGTACTACATCAACGT+TGG - tig0010967:71353-71372 None:intergenic 45.0%
ACGTTGATGTAGTACCTCCA+AGG + tig0010967:71353-71372 Msa1349640:CDS 45.0%
GTTAGACATGGAGAGAGTGA+AGG + tig0010967:71394-71413 Msa1349640:CDS 45.0%
! AGGGTACCTGATCCCAAAAT+AGG + tig0010967:71442-71461 Msa1349640:CDS 45.0%
TAGGCCTCACAAATAGAGGT+AGG + tig0010967:71461-71480 Msa1349640:CDS 45.0%
AGGCCTCACAAATAGAGGTA+GGG + tig0010967:71462-71481 Msa1349640:CDS 45.0%
GAACCCTACCTCTATTTGTG+AGG - tig0010967:71468-71487 None:intergenic 45.0%
AAAGCGCAACGCCATCTTTA+TGG + tig0010967:71830-71849 Msa1349640:CDS 45.0%
GGCTCAATGGCAACTAAACA+TGG - tig0010967:72109-72128 None:intergenic 45.0%
CCTCAATTATAGTCACGCTG+GGG + tig0010967:72184-72203 Msa1349640:intron 45.0%
AACTTGGTCATCGTGTCACA+TGG + tig0010967:72412-72431 Msa1349640:CDS 45.0%
ATGGACGGTTGAACAATTCG+AGG + tig0010967:72471-72490 Msa1349640:CDS 45.0%
TGGACGGTTGAACAATTCGA+GGG + tig0010967:72472-72491 Msa1349640:CDS 45.0%
GTCATGGAAAAGGGTTATGG+TGG + tig0010967:72526-72545 Msa1349640:CDS 45.0%
! TGGAAAAGGGTTATGGTGGA+AGG + tig0010967:72530-72549 Msa1349640:CDS 45.0%
CAGTCGTAATTCAGATCAGC+AGG - tig0010967:72969-72988 None:intergenic 45.0%
CCTGGTACGTCCATTGTTGT+TGG - tig0010967:71290-71309 None:intergenic 50.0%
CCAACAACAATGGACGTACC+AGG + tig0010967:71287-71306 Msa1349640:CDS 50.0%
!!! GTGAGGCCTATTTTGGGATC+AGG - tig0010967:71451-71470 None:intergenic 50.0%
TAGAGGTAGGGTTCAAGCAG+AGG + tig0010967:71474-71493 Msa1349640:CDS 50.0%
AGGGTTCAAGCAGAGGAATG+TGG + tig0010967:71481-71500 Msa1349640:CDS 50.0%
CTGGATTCAGAGAAGAGCCT+CGG + tig0010967:71635-71654 Msa1349640:CDS 50.0%
TCAGCCGCAGATTCACCATT+TGG - tig0010967:71875-71894 None:intergenic 50.0%
CCCCAGCGTGACTATAATTG+AGG - tig0010967:72187-72206 None:intergenic 50.0%
!! GCTGGGGATTGCAGTTTTGT+AGG + tig0010967:72200-72219 Msa1349640:intron 50.0%
TCAAAATTCTTCTCCCCGGG+TGG - tig0010967:72388-72407 None:intergenic 50.0%
AGGCGAGCTTGTCATGGAAA+AGG + tig0010967:72516-72535 Msa1349640:CDS 50.0%
GGCGAGCTTGTCATGGAAAA+GGG + tig0010967:72517-72536 Msa1349640:CDS 50.0%
! AATGCTCGATGCATTGGCGA+CGG + tig0010967:73090-73109 Msa1349640:three_prime_UTR 50.0%
CCTGGTACGTCCATTGTTGT+TGG - tig0010967:71290-71309 None:intergenic 50.0%
CCAACAACAATGGACGTACC+AGG + tig0010967:71287-71306 Msa1349640:CDS 50.0%
!!! GTGAGGCCTATTTTGGGATC+AGG - tig0010967:71451-71470 None:intergenic 50.0%
TAGAGGTAGGGTTCAAGCAG+AGG + tig0010967:71474-71493 Msa1349640:CDS 50.0%
AGGGTTCAAGCAGAGGAATG+TGG + tig0010967:71481-71500 Msa1349640:CDS 50.0%
CTGGATTCAGAGAAGAGCCT+CGG + tig0010967:71635-71654 Msa1349640:CDS 50.0%
TCAGCCGCAGATTCACCATT+TGG - tig0010967:71875-71894 None:intergenic 50.0%
CCCCAGCGTGACTATAATTG+AGG - tig0010967:72187-72206 None:intergenic 50.0%
!! GCTGGGGATTGCAGTTTTGT+AGG + tig0010967:72200-72219 Msa1349640:intron 50.0%
TCAAAATTCTTCTCCCCGGG+TGG - tig0010967:72388-72407 None:intergenic 50.0%
AGGCGAGCTTGTCATGGAAA+AGG + tig0010967:72516-72535 Msa1349640:CDS 50.0%
GGCGAGCTTGTCATGGAAAA+GGG + tig0010967:72517-72536 Msa1349640:CDS 50.0%
! AATGCTCGATGCATTGGCGA+CGG + tig0010967:73090-73109 Msa1349640:three_prime_UTR 50.0%
TGGAGAGAGTGAAGGGAACG+TGG + tig0010967:71402-71421 Msa1349640:CDS 55.0%
ATTGGACGGTATCAGCCACC+CGG + tig0010967:72370-72389 Msa1349640:CDS 55.0%
CAATGGAGGCGAGCTTGTCA+TGG + tig0010967:72510-72529 Msa1349640:CDS 55.0%
TGGAGAGAGTGAAGGGAACG+TGG + tig0010967:71402-71421 Msa1349640:CDS 55.0%
ATTGGACGGTATCAGCCACC+CGG + tig0010967:72370-72389 Msa1349640:CDS 55.0%
CAATGGAGGCGAGCTTGTCA+TGG + tig0010967:72510-72529 Msa1349640:CDS 55.0%
TTGGACGGTATCAGCCACCC+GGG + tig0010967:72371-72390 Msa1349640:CDS 60.0%
TTGGACGGTATCAGCCACCC+GGG + tig0010967:72371-72390 Msa1349640:CDS 60.0%
TGGACGGTATCAGCCACCCG+GGG + tig0010967:72372-72391 Msa1349640:CDS 65.0%
TGGACGGTATCAGCCACCCG+GGG + tig0010967:72372-72391 Msa1349640:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0010967 gene 71077 73334 71077 ID=Msa1349640;Name=Msa1349640
tig0010967 mRNA 71077 73334 71077 ID=Msa1349640-mRNA-1;Parent=Msa1349640;Name=Msa1349640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=56|1|1|1|1|1|5|279|354
tig0010967 exon 71077 71676 71077 ID=Msa1349640-mRNA-1:exon:7004;Parent=Msa1349640-mRNA-1
tig0010967 exon 71795 71914 71795 ID=Msa1349640-mRNA-1:exon:7005;Parent=Msa1349640-mRNA-1
tig0010967 exon 72338 72551 72338 ID=Msa1349640-mRNA-1:exon:7006;Parent=Msa1349640-mRNA-1
tig0010967 exon 72769 72849 72769 ID=Msa1349640-mRNA-1:exon:7007;Parent=Msa1349640-mRNA-1
tig0010967 exon 72950 73334 72950 ID=Msa1349640-mRNA-1:exon:7008;Parent=Msa1349640-mRNA-1
tig0010967 five_prime_UTR 71077 71132 71077 ID=Msa1349640-mRNA-1:five_prime_utr;Parent=Msa1349640-mRNA-1
tig0010967 CDS 71133 71676 71133 ID=Msa1349640-mRNA-1:cds;Parent=Msa1349640-mRNA-1
tig0010967 CDS 71795 71914 71795 ID=Msa1349640-mRNA-1:cds;Parent=Msa1349640-mRNA-1
tig0010967 CDS 72338 72551 72338 ID=Msa1349640-mRNA-1:cds;Parent=Msa1349640-mRNA-1
tig0010967 CDS 72769 72849 72769 ID=Msa1349640-mRNA-1:cds;Parent=Msa1349640-mRNA-1
tig0010967 CDS 72950 73055 72950 ID=Msa1349640-mRNA-1:cds;Parent=Msa1349640-mRNA-1
tig0010967 three_prime_UTR 73056 73334 73056 ID=Msa1349640-mRNA-1:three_prime_utr;Parent=Msa1349640-mRNA-1
Gene Sequence

>Msa1349640

ATGGGCATTGCCATAACATCACTACCACTCTCAGTATCTCAACAGAAACATCTTAAAATCAAACCCAACACTAAGTCGAATTATTCTAAGACTAACAACACATACTTACTAATCCAATGTTGTCACAGCCAAAAAGACCCTGTAGATTCACTAACCAACAACAATGGACGTACCAGGTTTCCAGAGAAAAATCCTCTGATAAACCCTTTACTAGCCTCCAACGTTGATGTAGTACCTCCAAGGCCTAGAAGAATAATTCTTGTTAGACATGGAGAGAGTGAAGGGAACGTGGATGAGAGTGTTTACACAAGGGTACCTGATCCCAAAATAGGCCTCACAAATAGAGGTAGGGTTCAAGCAGAGGAATGTGGACAAAGAATCAAGAACATGATTGAAAACGATGGTGATGAAAATTGGCAACTCTACTTTTATGTGTCTCCATATAGAAGGACTCTTGAAACTTTGCAAAGCTTAGCTCGTCCCTTTGAACGTTCAAGAATTGCTGGATTCAGAGAAGAGCCTCGGATTAGAGAACAAGATTTCGGGAATTTTCAAAATAGAGAGTTGATGAAAGTTGAAAAAGCGCAACGCCATCTTTATGGTCGTTTCTTTTACCGATTTCCAAATGGTGAATCTGCGGCTGATGTATACGATAGAATCACAGGATTTAGAGAAACACTAAGAGCAGATATTAATATTGGACGGTATCAGCCACCCGGGGAGAAGAATTTTGATGTGAACTTGGTCATCGTGTCACATGGTTTAACGCTTAGAGTTTTTCTTATGAGATGGTATAAATGGACGGTTGAACAATTCGAGGGTCTCAACAATTTTGGCAATGGAGGCGAGCTTGTCATGGAAAAGGGTTATGGTGGAAGGTATAGCTTATCAATGCATCATGATGAACAAGAGTTAAGACAGTTTGGATTGACTGATGAAATGCTGATTGATCAAGAATGGCATAAATTTGCAAGGCCTGCTGATCTGAATTACGACTGTCCAATGGTGAATTCCTTCTTTCCTCATCTTCATGAAGAAGCAAACAGAAGCCAACAAAAAGGGTAG

Protein sequence

>Msa1349640

MGIAITSLPLSVSQQKHLKIKPNTKSNYSKTNNTYLLIQCCHSQKDPVDSLTNNNGRTRFPEKNPLINPLLASNVDVVPPRPRRIILVRHGESEGNVDESVYTRVPDPKIGLTNRGRVQAEECGQRIKNMIENDGDENWQLYFYVSPYRRTLETLQSLARPFERSRIAGFREEPRIREQDFGNFQNRELMKVEKAQRHLYGRFFYRFPNGESAADVYDRITGFRETLRADINIGRYQPPGEKNFDVNLVIVSHGLTLRVFLMRWYKWTVEQFEGLNNFGNGGELVMEKGYGGRYSLSMHHDEQELRQFGLTDEMLIDQEWHKFARPADLNYDCPMVNSFFPHLHEEANRSQQKG*