AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1405380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405380 MtrunA17_Chr8g0335211 97.608 209 5 0 53 261 12 220 9.37e-155 429
Msa1405380 MtrunA17_Chr4g0033841 40.449 89 53 0 136 224 108 196 6.91e-14 68.9
Msa1405380 MtrunA17_Chr7g0214751 30.201 149 71 5 128 244 90 237 2.18e-12 65.1
Msa1405380 MtrunA17_Chr4g0052911 33.600 125 71 2 131 243 114 238 2.24e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405380 AT3G60370.1 66.805 241 65 4 25 261 13 242 1.12e-107 311
Msa1405380 AT3G60370.2 63.359 262 81 4 4 261 21 271 3.93e-107 311
Msa1405380 AT2G43560.1 39.640 111 66 1 114 224 81 190 8.93e-16 74.7
Msa1405380 AT2G43560.2 43.820 89 50 0 136 224 46 134 1.16e-15 73.2
Msa1405380 AT4G19830.1 29.932 147 70 4 136 249 83 229 2.79e-13 67.8
Msa1405380 AT5G13410.1 31.788 151 70 5 126 244 104 253 5.00e-12 64.7

Find 52 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTTCTCTAATAAAATT+TGG 0.135782 tig0023127:+87324 None:intergenic
TGGTTCTTCTTTCACAGTTT+TGG 0.207260 tig0023127:+85769 None:intergenic
AACTATATAACGCGTGATTC+GGG 0.213117 tig0023127:-87124 Msa1405380:CDS
GAAACTTGCGCTTTCTGTTT+TGG 0.240114 tig0023127:-87475 Msa1405380:CDS
TATTGACAGCACTTATTTAC+AGG 0.273970 tig0023127:-86573 Msa1405380:CDS
TACTTTCTCAGGATGTAATA+TGG 0.285948 tig0023127:+87506 None:intergenic
CTTGTTACCCATGCGAATTT+TGG 0.288794 tig0023127:+86541 None:intergenic
TACCTTCTCTAATAAAATTT+GGG 0.314007 tig0023127:+87325 None:intergenic
ATAATTATTCCTCCTGATCT+TGG 0.323150 tig0023127:-86353 Msa1405380:CDS
TAACTATATAACGCGTGATT+CGG 0.332001 tig0023127:-87125 Msa1405380:CDS
TTCCTCCTTAATACTTTCTC+AGG 0.354488 tig0023127:+87495 None:intergenic
CTTCAGCACAAATATTAGTT+AGG 0.355241 tig0023127:-85698 Msa1405380:three_prime_UTR
TACATCCTGAGAAAGTATTA+AGG 0.373534 tig0023127:-87500 Msa1405380:CDS
CACTCTTACATGGAATCCTT+TGG 0.373861 tig0023127:+87620 None:intergenic
ATAAAATTTGGGAAGTCATC+TGG 0.374287 tig0023127:+87336 None:intergenic
GGTAACAAGGCATTGGTTCC+AGG 0.384493 tig0023127:-86527 Msa1405380:intron
TCACGCGTTATATAGTTATC+TGG 0.398419 tig0023127:+87130 None:intergenic
CACTTATTTACAGGGTTCTC+CGG 0.422942 tig0023127:-86564 Msa1405380:CDS
AAAACCTGCTGACCATCCTT+TGG 0.437003 tig0023127:+87061 None:intergenic
CAGGTCACATTTCACTATGT+TGG 0.449348 tig0023127:-86617 Msa1405380:CDS
TTTGCATGAGAAGATAAAGT+TGG 0.475317 tig0023127:+87435 None:intergenic
TGTATTTATGGATAGAGTGC+AGG 0.475495 tig0023127:-87535 Msa1405380:intron
TAAATTATGATCTTGCTTCG+AGG 0.476673 tig0023127:-85672 Msa1405380:three_prime_UTR
TATGTTGGCTATAATGAATC+CGG 0.489665 tig0023127:-86602 Msa1405380:CDS
TCCTCCTGATCTTGGACCCC+CGG 0.496637 tig0023127:-86345 Msa1405380:intron
CAAAATTCGCATGGGTAACA+AGG 0.517528 tig0023127:-86540 Msa1405380:CDS
AGTGCTGTCAATACGCCGGC+CGG 0.518095 tig0023127:+86583 None:intergenic
AACATCAGAGTAAAATCCTA+TGG 0.519964 tig0023127:+85749 None:intergenic
TTGTCCAAAGGATGGTCAGC+AGG 0.523009 tig0023127:-87065 Msa1405380:intron
TCGCATGGGTAACAAGGCAT+TGG 0.532556 tig0023127:-86534 Msa1405380:CDS
AAATTCCTTTGTACAGTACA+AGG 0.543326 tig0023127:-87686 Msa1405380:CDS
CTGTACCAACTTCAAAATCT+CGG 0.552576 tig0023127:+87092 None:intergenic
TTCTCCGGCCAAAATTCGCA+TGG 0.552997 tig0023127:-86549 Msa1405380:CDS
GGAATTAGAGACATGAGAGC+AGG 0.554241 tig0023127:-86389 Msa1405380:CDS
TCTGATGTAGGATTTGAGGA+AGG 0.571358 tig0023127:-86410 Msa1405380:intron
ATTAGAGACATGAGAGCAGG+TGG 0.575545 tig0023127:-86386 Msa1405380:CDS
ATTGACAGCACTTATTTACA+GGG 0.593497 tig0023127:-86572 Msa1405380:CDS
AACTGTGAAAGAAGAACCAT+AGG 0.596337 tig0023127:-85765 Msa1405380:CDS
CTGTTGTCAATAATCGAGAA+AGG 0.598520 tig0023127:-85649 Msa1405380:three_prime_UTR
GGACAAGGACAATCAACTCA+TGG 0.598798 tig0023127:-87659 Msa1405380:CDS
ACTATATAACGCGTGATTCG+GGG 0.601130 tig0023127:-87123 Msa1405380:CDS
CTTGTCCTTGTACTGTACAA+AGG 0.610580 tig0023127:+87681 None:intergenic
CTTTGTACAGTACAAGGACA+AGG 0.612700 tig0023127:-87680 Msa1405380:CDS
ACAGGTGATTGTCCAAAGGA+TGG 0.620639 tig0023127:-87073 Msa1405380:CDS
GAAGATGGTGAAGATAAGAG+CGG 0.626564 tig0023127:+89021 None:intergenic
TCTCCGGCCAAAATTCGCAT+GGG 0.643150 tig0023127:-86548 Msa1405380:CDS
ATCCTGAGAAAGTATTAAGG+AGG 0.647507 tig0023127:-87497 Msa1405380:CDS
TGGTACAGGTGATTGTCCAA+AGG 0.660317 tig0023127:-87077 Msa1405380:CDS
AATAAGTGCTGTCAATACGC+CGG 0.677404 tig0023127:+86579 None:intergenic
TTGGCTATAATGAATCCGGC+CGG 0.687904 tig0023127:-86598 Msa1405380:CDS
ACAGTACAAGGACAAGGACA+AGG 0.711874 tig0023127:-87674 Msa1405380:CDS
CAAGGACAATCAACTCATGG+AGG 0.721666 tig0023127:-87656 Msa1405380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTAATATTTTAGTTGA+TGG - tig0023127:85850-85869 Msa1405380:intron 15.0%
!!! AAGTTAATATTTTAGTTGAT+GGG - tig0023127:85851-85870 Msa1405380:intron 15.0%
!!! TAATTTTCATCTTAATTGTT+TGG - tig0023127:87661-87680 Msa1405380:CDS 15.0%
!!! AATTTTCATCTTAATTGTTT+GGG - tig0023127:87662-87681 Msa1405380:CDS 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + tig0023127:88459-88478 None:intergenic 15.0%
!!! TCACATAATTTTTTACATTA+CGG - tig0023127:88731-88750 Msa1405380:intron 15.0%
!! AATTGAAACACATATATGTA+TGG + tig0023127:85768-85787 None:intergenic 20.0%
!!! TATTTTTTTCTTTCTTTCTG+AGG - tig0023127:85809-85828 Msa1405380:CDS 20.0%
!! TTGAAAAGTTACAACAAATT+AGG - tig0023127:86023-86042 Msa1405380:intron 20.0%
!! TGAAAAGTTACAACAAATTA+GGG - tig0023127:86024-86043 Msa1405380:intron 20.0%
!! TATAAGCAATTCTTAAGTTT+AGG - tig0023127:86322-86341 Msa1405380:intron 20.0%
!! AAACAATTCTATTTGTTTGT+TGG - tig0023127:86366-86385 Msa1405380:CDS 20.0%
!! AACAATTCTATTTGTTTGTT+GGG - tig0023127:86367-86386 Msa1405380:CDS 20.0%
!! GTAATAAATACTTTCAACAT+TGG + tig0023127:86669-86688 None:intergenic 20.0%
!! ATTTATTGAAGAGATTAGAA+GGG + tig0023127:86728-86747 None:intergenic 20.0%
!! AATTTATTGAAGAGATTAGA+AGG + tig0023127:86729-86748 None:intergenic 20.0%
!! TAACTATCATACAATGAATT+AGG + tig0023127:86830-86849 None:intergenic 20.0%
!! TTTCATTTAATATCCTTCTA+AGG - tig0023127:87090-87109 Msa1405380:CDS 20.0%
!! TTCATTTAATATCCTTCTAA+GGG - tig0023127:87091-87110 Msa1405380:CDS 20.0%
!!! GCATTTTTTGTTTGTATTTA+TGG - tig0023127:87114-87133 Msa1405380:CDS 20.0%
!!! ATTATACGGATTCATATTTT+TGG + tig0023127:87254-87273 None:intergenic 20.0%
!! TACCTTCTCTAATAAAATTT+GGG + tig0023127:87339-87358 None:intergenic 20.0%
!! TTACCTTCTCTAATAAAATT+TGG + tig0023127:87340-87359 None:intergenic 20.0%
!! AATCATGTATGAAAAAACAA+TGG + tig0023127:87366-87385 None:intergenic 20.0%
!! TAAAGAAAGAAATAGTTGAT+TGG + tig0023127:87641-87660 None:intergenic 20.0%
!! AAGAAGTTAACACAAATATT+AGG - tig0023127:87687-87706 Msa1405380:CDS 20.0%
!! TTAGCAATAATTATCAAACA+TGG + tig0023127:88394-88413 None:intergenic 20.0%
! ATATATGTATGGTATGAAAG+TGG + tig0023127:85757-85776 None:intergenic 25.0%
!! AATTTTCAGTTAAGATTGCA+GGG + tig0023127:86250-86269 None:intergenic 25.0%
!! TAATTTTCAGTTAAGATTGC+AGG + tig0023127:86251-86270 None:intergenic 25.0%
! ATAAACTATCTATCCAAACA+GGG + tig0023127:86491-86510 None:intergenic 25.0%
! AATAAACTATCTATCCAAAC+AGG + tig0023127:86492-86511 None:intergenic 25.0%
!! AAATACTTTCAACATTGGTT+GGG + tig0023127:86664-86683 None:intergenic 25.0%
! TAAATACTTTCAACATTGGT+TGG + tig0023127:86665-86684 None:intergenic 25.0%
! TTTATTGAAGAGATTAGAAG+GGG + tig0023127:86727-86746 None:intergenic 25.0%
!! ATTACAGAGCACAAAATTTT+GGG + tig0023127:86807-86826 None:intergenic 25.0%
!!! TGATAAAGCATTTCCTTTTT+TGG - tig0023127:86947-86966 Msa1405380:intron 25.0%
! AAAATAATGTCACTCTTACA+TGG + tig0023127:87054-87073 None:intergenic 25.0%
!! AGTGACATTATTTTCTTGAA+TGG - tig0023127:87060-87079 Msa1405380:intron 25.0%
! TCATTTAATATCCTTCTAAG+GGG - tig0023127:87092-87111 Msa1405380:CDS 25.0%
!! AAGACACGTTTTTCATTATA+CGG + tig0023127:87268-87287 None:intergenic 25.0%
!! TTCCCAAATTTTATTAGAGA+AGG - tig0023127:87334-87353 Msa1405380:CDS 25.0%
! AATACTACTACTTGTATGTT+TGG + tig0023127:87879-87898 None:intergenic 25.0%
!!! TAAATCTATCCTTTTTTACC+TGG + tig0023127:88155-88174 None:intergenic 25.0%
! AAAACATTGCCTATACATAA+GGG + tig0023127:88629-88648 None:intergenic 25.0%
! TAAAACATTGCCTATACATA+AGG + tig0023127:88630-88649 None:intergenic 25.0%
!! ACATGCATAGTTTAAAATTG+TGG + tig0023127:88776-88795 None:intergenic 25.0%
!! AATTTTAAACTATGCATGTG+TGG - tig0023127:88777-88796 Msa1405380:intron 25.0%
!! ATTTTAAACTATGCATGTGT+GGG - tig0023127:88778-88797 Msa1405380:intron 25.0%
!!! AATCTTGTTTTGTATTTTGC+AGG - tig0023127:88805-88824 Msa1405380:intron 25.0%
! ATTCTGATAGTTGATATGCA+AGG - tig0023127:85942-85961 Msa1405380:intron 30.0%
! ATTGTTGCTGTTAAGGTTAA+TGG - tig0023127:85999-86018 Msa1405380:intron 30.0%
ACAACAAATTAGGGTATGTT+TGG - tig0023127:86033-86052 Msa1405380:intron 30.0%
TTGACTAAAAAAGACCTGTT+CGG - tig0023127:86098-86117 Msa1405380:intron 30.0%
AAATAATCAATAAGCTCGTG+AGG + tig0023127:86138-86157 None:intergenic 30.0%
! ATTTTCAGTTAAGATTGCAG+GGG + tig0023127:86249-86268 None:intergenic 30.0%
! TTCTATTTGTTTGTTGGGAT+AGG - tig0023127:86372-86391 Msa1405380:CDS 30.0%
ATAGGACTAAGATAGTTTAG+AGG - tig0023127:86390-86409 Msa1405380:CDS 30.0%
TTCCATTGCACTATAGTTTA+GGG - tig0023127:86427-86446 Msa1405380:intron 30.0%
GAGCTATAGTGTTTAAACAA+CGG - tig0023127:86465-86484 Msa1405380:intron 30.0%
TTGTGGAAATAAGCTGAAAA+TGG - tig0023127:86602-86621 Msa1405380:CDS 30.0%
!!! CACAAAATTTTGGGTTTGTT+TGG + tig0023127:86798-86817 None:intergenic 30.0%
! GATTACAGAGCACAAAATTT+TGG + tig0023127:86808-86827 None:intergenic 30.0%
TCCATGTTTATCTAACTACT+TGG - tig0023127:86919-86938 Msa1405380:intron 30.0%
ACCAAGTAGTTAGATAAACA+TGG + tig0023127:86923-86942 None:intergenic 30.0%
! AGGAATTTTACTGCCAAAAA+AGG + tig0023127:86963-86982 None:intergenic 30.0%
AAATTCCTTTGTACAGTACA+AGG - tig0023127:86975-86994 Msa1405380:intron 30.0%
AGGCACTAATAAAAAACCAA+AGG - tig0023127:87025-87044 Msa1405380:intron 30.0%
TACTTTCTCAGGATGTAATA+TGG + tig0023127:87158-87177 None:intergenic 30.0%
!! TACATCCTGAGAAAGTATTA+AGG - tig0023127:87161-87180 Msa1405380:intron 30.0%
TTTGCATGAGAAGATAAAGT+TGG + tig0023127:87229-87248 None:intergenic 30.0%
ATAAAATTTGGGAAGTCATC+TGG + tig0023127:87328-87347 None:intergenic 30.0%
AAAACAACTGTAACACTTAC+AGG + tig0023127:87439-87458 None:intergenic 30.0%
!! GTTGTTTTGTGTCAAACTTT+TGG - tig0023127:87451-87470 Msa1405380:CDS 30.0%
! AACTTTTGGATATGATGTTC+TGG - tig0023127:87465-87484 Msa1405380:CDS 30.0%
!!! GGTTTGTTAATATGCTTTTC+AGG - tig0023127:87486-87505 Msa1405380:CDS 30.0%
TAACTATATAACGCGTGATT+CGG - tig0023127:87536-87555 Msa1405380:intron 30.0%
!!! ATTTACCGAGATTTTGAAGT+TGG - tig0023127:87564-87583 Msa1405380:intron 30.0%
! ATTTTGCAGTGAAAACAAAC+AGG + tig0023127:87756-87775 None:intergenic 30.0%
!! CTTGATGAGTTTGTTGAAAT+GGG - tig0023127:87921-87940 Msa1405380:intron 30.0%
!! TTGATGAGTTTGTTGAAATG+GGG - tig0023127:87922-87941 Msa1405380:intron 30.0%
TTTGTTGAAATGGGGAAAAT+TGG - tig0023127:87930-87949 Msa1405380:intron 30.0%
ATTGGAAATTGATGTTTGAG+TGG - tig0023127:87948-87967 Msa1405380:intron 30.0%
! TATGTTGGCTATAATGAATC+CGG - tig0023127:88059-88078 Msa1405380:intron 30.0%
TATTGACAGCACTTATTTAC+AGG - tig0023127:88088-88107 Msa1405380:intron 30.0%
ATTGACAGCACTTATTTACA+GGG - tig0023127:88089-88108 Msa1405380:intron 30.0%
AAATCCTACATCAGAAAATG+TGG + tig0023127:88246-88265 None:intergenic 30.0%
! ATTTTCTGATGTAGGATTTG+AGG - tig0023127:88247-88266 Msa1405380:intron 30.0%
ATAATTATTCCTCCTGATCT+TGG - tig0023127:88308-88327 Msa1405380:intron 30.0%
AAAGAGAATAAGAGATGTAC+CGG + tig0023127:88338-88357 None:intergenic 30.0%
AACTTATTCCGAACATATGT+CGG - tig0023127:88488-88507 Msa1405380:intron 30.0%
! ATGTCTTTGATTAGAAGTGT+CGG - tig0023127:88543-88562 Msa1405380:intron 30.0%
GTTGCTAAAAACTTATGCTA+AGG - tig0023127:88575-88594 Msa1405380:intron 30.0%
GTTTATCTTCCCTTATGTAT+AGG - tig0023127:88617-88636 Msa1405380:intron 30.0%
!! TTGTTTTGTATTTTGCAGGT+AGG - tig0023127:88809-88828 Msa1405380:intron 30.0%
TTTGAGCTGAAAAATGTTGA+AGG + tig0023127:88836-88855 None:intergenic 30.0%
AACATCAGAGTAAAATCCTA+TGG + tig0023127:88915-88934 None:intergenic 30.0%
CTTCAGCACAAATATTAGTT+AGG - tig0023127:88963-88982 Msa1405380:intron 30.0%
TAAATTATGATCTTGCTTCG+AGG - tig0023127:88989-89008 Msa1405380:CDS 30.0%
GAAGAAGAAGAAGAAGAAGA+TGG + tig0023127:85658-85677 None:intergenic 35.0%
CGAAGTTGAATTTATGTTGC+TGG - tig0023127:85903-85922 Msa1405380:intron 35.0%
! AACTCTCATTGTTGCTGTTA+AGG - tig0023127:85992-86011 Msa1405380:intron 35.0%
! TAAGATAGTTTAGAGGTGCA+GGG - tig0023127:86397-86416 Msa1405380:CDS 35.0%
GTTCCATTGCACTATAGTTT+AGG - tig0023127:86426-86445 Msa1405380:intron 35.0%
TCCATTGCACTATAGTTTAG+GGG - tig0023127:86428-86447 Msa1405380:intron 35.0%
!! GTTGTTTTCAGAAGCTATCA+TGG - tig0023127:86574-86593 Msa1405380:CDS 35.0%
AGATTAGAAGGGGTTATGTT+TGG + tig0023127:86717-86736 None:intergenic 35.0%
AACAAAAAATGCCCCTTAGA+AGG + tig0023127:87106-87125 None:intergenic 35.0%
TGTATTTATGGATAGAGTGC+AGG - tig0023127:87126-87145 Msa1405380:CDS 35.0%
!! ATCCTGAGAAAGTATTAAGG+AGG - tig0023127:87164-87183 Msa1405380:intron 35.0%
TTCCTCCTTAATACTTTCTC+AGG + tig0023127:87169-87188 None:intergenic 35.0%
TCACGCGTTATATAGTTATC+TGG + tig0023127:87534-87553 None:intergenic 35.0%
AACTATATAACGCGTGATTC+GGG - tig0023127:87537-87556 Msa1405380:intron 35.0%
CTGTACCAACTTCAAAATCT+CGG + tig0023127:87572-87591 None:intergenic 35.0%
AATTCTTCTAGACGTACGTT+TGG - tig0023127:87773-87792 Msa1405380:intron 35.0%
GAAATAAGGAAGCTACCAAT+TGG + tig0023127:87808-87827 None:intergenic 35.0%
! CAAGTAGTAGTATTTTGCAG+TGG - tig0023127:87885-87904 Msa1405380:intron 35.0%
CCATTTCAACAAACTCATCA+AGG + tig0023127:87923-87942 None:intergenic 35.0%
!! CCTTGATGAGTTTGTTGAAA+TGG - tig0023127:87920-87939 Msa1405380:intron 35.0%
TGACAAAAAGCTTTCGTCAT+TGG - tig0023127:88203-88222 Msa1405380:intron 35.0%
! TTCTCCACATTTTCTGATGT+AGG - tig0023127:88239-88258 Msa1405380:intron 35.0%
AAGAGAATAAGAGATGTACC+GGG + tig0023127:88337-88356 None:intergenic 35.0%
CTTCTAATCAAAGACATGCT+TGG + tig0023127:88540-88559 None:intergenic 35.0%
TTACATTACGGCCACAATTA+TGG - tig0023127:88743-88762 Msa1405380:intron 35.0%
! TGGTTCTTCTTTCACAGTTT+TGG + tig0023127:88895-88914 None:intergenic 35.0%
AACTGTGAAAGAAGAACCAT+AGG - tig0023127:88896-88915 Msa1405380:intron 35.0%
CTGTTGTCAATAATCGAGAA+AGG - tig0023127:89012-89031 Msa1405380:CDS 35.0%
GAAGATGGTGAAGATAAGAG+CGG + tig0023127:85643-85662 None:intergenic 40.0%
! CTAAGATAGTTTAGAGGTGC+AGG - tig0023127:86396-86415 Msa1405380:CDS 40.0%
! AAGATAGTTTAGAGGTGCAG+GGG - tig0023127:86398-86417 Msa1405380:CDS 40.0%
ACCCCTAAACTATAGTGCAA+TGG + tig0023127:86432-86451 None:intergenic 40.0%
AAGCTATCATGGAAAGCTTG+TGG - tig0023127:86585-86604 Msa1405380:CDS 40.0%
CTTGTCCTTGTACTGTACAA+AGG + tig0023127:86983-87002 None:intergenic 40.0%
CTTTGTACAGTACAAGGACA+AGG - tig0023127:86981-87000 Msa1405380:intron 40.0%
CACTCTTACATGGAATCCTT+TGG + tig0023127:87044-87063 None:intergenic 40.0%
! GAAACTTGCGCTTTCTGTTT+TGG - tig0023127:87186-87205 Msa1405380:intron 40.0%
ACTATATAACGCGTGATTCG+GGG - tig0023127:87538-87557 Msa1405380:intron 40.0%
!!! CGAGATTTTGAAGTTGGTAC+AGG - tig0023127:87570-87589 Msa1405380:intron 40.0%
GACAATTTCAGTTCTCAGTC+TGG + tig0023127:87722-87741 None:intergenic 40.0%
GTTTGGTTAGAAGCTCCAAT+TGG - tig0023127:87790-87809 Msa1405380:intron 40.0%
GCAATCTCGACGTTGAAATA+AGG + tig0023127:87822-87841 None:intergenic 40.0%
TTTCAACGTCGAGATTGCAT+TGG - tig0023127:87824-87843 Msa1405380:intron 40.0%
TTCAACGTCGAGATTGCATT+GGG - tig0023127:87825-87844 Msa1405380:intron 40.0%
ATAGTGAAATGTGACCTGCA+AGG + tig0023127:88042-88061 None:intergenic 40.0%
CAGGTCACATTTCACTATGT+TGG - tig0023127:88044-88063 Msa1405380:intron 40.0%
! AATAAGTGCTGTCAATACGC+CGG + tig0023127:88085-88104 None:intergenic 40.0%
CACTTATTTACAGGGTTCTC+CGG - tig0023127:88097-88116 Msa1405380:intron 40.0%
! CTTGTTACCCATGCGAATTT+TGG + tig0023127:88123-88142 None:intergenic 40.0%
CAAAATTCGCATGGGTAACA+AGG - tig0023127:88121-88140 Msa1405380:intron 40.0%
!! GCATTGGTTCCAGGTAAAAA+AGG - tig0023127:88143-88162 Msa1405380:intron 40.0%
TCTGATGTAGGATTTGAGGA+AGG - tig0023127:88251-88270 Msa1405380:intron 40.0%
AGAGAATAAGAGATGTACCG+GGG + tig0023127:88336-88355 None:intergenic 40.0%
GGTGTCAACATGTACATGTT+CGG + tig0023127:88438-88457 None:intergenic 40.0%
GAGAGAGAGAGAGAGTTACA+TGG + tig0023127:85706-85725 None:intergenic 45.0%
AAGTAAGTGATGGTCCGAAC+AGG + tig0023127:86115-86134 None:intergenic 45.0%
! AGATAGTTTAGAGGTGCAGG+GGG - tig0023127:86399-86418 Msa1405380:CDS 45.0%
GTTTAAACAACGGCCCTGTT+TGG - tig0023127:86475-86494 Msa1405380:intron 45.0%
ACAGTACAAGGACAAGGACA+AGG - tig0023127:86987-87006 Msa1405380:intron 45.0%
GGACAAGGACAATCAACTCA+TGG - tig0023127:87002-87021 Msa1405380:intron 45.0%
CAAGGACAATCAACTCATGG+AGG - tig0023127:87005-87024 Msa1405380:intron 45.0%
CTTACAGGAGAGACATCACA+GGG + tig0023127:87424-87443 None:intergenic 45.0%
ACTTACAGGAGAGACATCAC+AGG + tig0023127:87425-87444 None:intergenic 45.0%
TGGTACAGGTGATTGTCCAA+AGG - tig0023127:87584-87603 Msa1405380:intron 45.0%
ACAGGTGATTGTCCAAAGGA+TGG - tig0023127:87588-87607 Msa1405380:intron 45.0%
AAAACCTGCTGACCATCCTT+TGG + tig0023127:87603-87622 None:intergenic 45.0%
TACAGTATACCATGCCTTGC+AGG - tig0023127:88025-88044 Msa1405380:intron 45.0%
TTGGCTATAATGAATCCGGC+CGG - tig0023127:88063-88082 Msa1405380:intron 45.0%
!! TTACCCATGCGAATTTTGGC+CGG + tig0023127:88119-88138 None:intergenic 45.0%
GGAATTAGAGACATGAGAGC+AGG - tig0023127:88272-88291 Msa1405380:intron 45.0%
ATTAGAGACATGAGAGCAGG+TGG - tig0023127:88275-88294 Msa1405380:intron 45.0%
GAGAATAAGAGATGTACCGG+GGG + tig0023127:88335-88354 None:intergenic 45.0%
TCAAACATGGAAAGACTCGC+AGG + tig0023127:88381-88400 None:intergenic 45.0%
GTCTGACACCGACATATGTT+CGG + tig0023127:88499-88518 None:intergenic 45.0%
TTGCTTTCGCGATGTAGTTG+TGG - tig0023127:88705-88724 Msa1405380:intron 45.0%
GTGGCTCACAACCATAATTG+TGG + tig0023127:88757-88776 None:intergenic 45.0%
GCTCGTGAGGAAGTAAGTGA+TGG + tig0023127:86125-86144 None:intergenic 50.0%
TTGTCCAAAGGATGGTCAGC+AGG - tig0023127:87596-87615 Msa1405380:intron 50.0%
GAAATGTGACCTGCAAGGCA+TGG + tig0023127:88037-88056 None:intergenic 50.0%
TTCTCCGGCCAAAATTCGCA+TGG - tig0023127:88112-88131 Msa1405380:intron 50.0%
TCTCCGGCCAAAATTCGCAT+GGG - tig0023127:88113-88132 Msa1405380:intron 50.0%
TCGCATGGGTAACAAGGCAT+TGG - tig0023127:88127-88146 Msa1405380:intron 50.0%
!! GGTAACAAGGCATTGGTTCC+AGG - tig0023127:88134-88153 Msa1405380:intron 50.0%
CTCGCAGGTACAGTAGTGAA+TGG + tig0023127:88366-88385 None:intergenic 50.0%
AGTGCTGTCAATACGCCGGC+CGG + tig0023127:88081-88100 None:intergenic 60.0%
TCCTCCTGATCTTGGACCCC+CGG - tig0023127:88316-88335 Msa1405380:intron 60.0%
TGTACCGGGGGTCCAAGATC+AGG + tig0023127:88323-88342 None:intergenic 60.0%
ACCGGGGGTCCAAGATCAGG+AGG + tig0023127:88320-88339 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0023127 gene 85595 89088 85595 ID=Msa1405380;Name=Msa1405380
tig0023127 mRNA 85595 89088 85595 ID=Msa1405380-mRNA-1;Parent=Msa1405380;Name=Msa1405380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=39|1|1|1|0.83|0.85|7|142|261
tig0023127 exon 85595 85856 85595 ID=Msa1405380-mRNA-1:exon:24054;Parent=Msa1405380-mRNA-1
tig0023127 exon 86346 86422 86346 ID=Msa1405380-mRNA-1:exon:24053;Parent=Msa1405380-mRNA-1
tig0023127 exon 86528 86636 86528 ID=Msa1405380-mRNA-1:exon:24052;Parent=Msa1405380-mRNA-1
tig0023127 exon 87066 87175 87066 ID=Msa1405380-mRNA-1:exon:24051;Parent=Msa1405380-mRNA-1
tig0023127 exon 87328 87542 87328 ID=Msa1405380-mRNA-1:exon:24050;Parent=Msa1405380-mRNA-1
tig0023127 exon 87629 87710 87629 ID=Msa1405380-mRNA-1:exon:24049;Parent=Msa1405380-mRNA-1
tig0023127 exon 88977 89088 88977 ID=Msa1405380-mRNA-1:exon:24048;Parent=Msa1405380-mRNA-1
tig0023127 five_prime_UTR 89050 89088 89050 ID=Msa1405380-mRNA-1:five_prime_utr;Parent=Msa1405380-mRNA-1
tig0023127 CDS 88977 89049 88977 ID=Msa1405380-mRNA-1:cds;Parent=Msa1405380-mRNA-1
tig0023127 CDS 87629 87710 87629 ID=Msa1405380-mRNA-1:cds;Parent=Msa1405380-mRNA-1
tig0023127 CDS 87328 87542 87328 ID=Msa1405380-mRNA-1:cds;Parent=Msa1405380-mRNA-1
tig0023127 CDS 87066 87175 87066 ID=Msa1405380-mRNA-1:cds;Parent=Msa1405380-mRNA-1
tig0023127 CDS 86528 86636 86528 ID=Msa1405380-mRNA-1:cds;Parent=Msa1405380-mRNA-1
tig0023127 CDS 86346 86422 86346 ID=Msa1405380-mRNA-1:cds;Parent=Msa1405380-mRNA-1
tig0023127 CDS 85737 85856 85737 ID=Msa1405380-mRNA-1:cds;Parent=Msa1405380-mRNA-1
tig0023127 three_prime_UTR 85595 85736 85595 ID=Msa1405380-mRNA-1:three_prime_utr;Parent=Msa1405380-mRNA-1
Gene Sequence

>Msa1405380

ATGCTACCGCTCTTATCTTCACCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTCATGCAATCTTTTCCATTAAAATTCCTTTGTACAGTACAAGGACAAGGACAAGGACAATCAACTCATGGAGGCACTAATAAAAAACCAAAGGATTCCATAGTGCAGGATAACACCATATTACATCCTGAGAAAGTATTAAGGAGGAAACTTGCGCTTTCTGTTTTGGTCTCAACTTGTGTTTTTCCAACTTTATCTTCTCATGCAAAGACCAAAAATATGAATCCGTATAATGAAAAACGTGTCTTGCAACAAAACAAGAATATACAAAAACAAAACAACGCACCAGATGACTTCCCAAATTTTATTAGAGAAGGTTTTGAAGTCAAAGTAATAGCACCAGATAACTATATAACGCGTGATTCGGGGCTCATTTACCGAGATTTTGAAGTTGGTACAGGTGATTGTCCAAAGGATGGTCAGCAGGTCACATTTCACTATGTTGGCTATAATGAATCCGGCCGGCGTATTGACAGCACTTATTTACAGGGTTCTCCGGCCAAAATTCGCATGGGTAACAAGGCATTGGTTCCAGGATTTGAGGAAGGAATTAGAGACATGAGAGCAGGTGGAAAGAGAAGAATAATTATTCCTCCTGATCTTGGACCCCCGGTAGGACCTTCAACATTTTTCAGCTCAAAACAATTTGAAGTTTTTGATGTTGAATTATTAAGCATCCAAAACTGTGAAAGAAGAACCATAGGATTTTACTCTGATGTTGTATGCAATTGA

Protein sequence

>Msa1405380

MLPLLSSPSSSSSSSSSSLMQSFPLKFLCTVQGQGQGQSTHGGTNKKPKDSIVQDNTILHPEKVLRRKLALSVLVSTCVFPTLSSHAKTKNMNPYNEKRVLQQNKNIQKQNNAPDDFPNFIREGFEVKVIAPDNYITRDSGLIYRDFEVGTGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGSPAKIRMGNKALVPGFEEGIRDMRAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIGFYSDVVCN*