AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0813630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813630 MtrunA17_Chr5g0431451 81.075 428 49 4 1 424 1 400 0.0 666
Msa0813630 MtrunA17_Chr7g0214541 34.160 363 179 13 67 418 49 362 2.37e-42 153
Msa0813630 MtrunA17_Chr8g0365721 31.232 349 193 9 58 400 60 367 7.08e-42 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813630 AT1G07010.1 55.711 429 143 7 1 423 1 388 1.67e-154 442
Msa0813630 AT1G07010.2 55.245 429 141 8 1 423 1 384 2.48e-150 432
Msa0813630 AT1G07010.3 53.864 440 145 10 1 423 1 399 1.48e-145 420
Msa0813630 AT1G18480.1 33.811 349 183 11 76 417 56 363 9.18e-47 166

Find 145 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAACATTGGCCAATTTAT+TGG 0.187565 5_3:-44651197 Msa0813630:three_prime_UTR
TTCTGCTTTGTCTAGGTAAA+TGG 0.194308 5_3:-44654756 Msa0813630:intron
TTACCTCTGGTCTTGAATTA+AGG 0.203062 5_3:+44652826 None:intergenic
TTGAAACCTATTGTTGTTAT+TGG 0.210496 5_3:-44656834 Msa0813630:CDS
CTCAAACTGTTGGGGTAAAT+TGG 0.237790 5_3:-44653117 Msa0813630:intron
GAAAGGTGGAGCTGTGTTTC+AGG 0.243774 5_3:-44655296 Msa0813630:intron
GATTTCAGATATGTTGATTC+TGG 0.255499 5_3:-44654705 Msa0813630:CDS
AAGAATAAATGTGGGAAAAT+AGG 0.260313 5_3:-44650970 Msa0813630:three_prime_UTR
TGATGAATGTAGTGATTTCT+TGG 0.278304 5_3:-44654676 Msa0813630:CDS
TCGACGGCTATCCAATAAAT+TGG 0.309617 5_3:+44651186 None:intergenic
ATTGAAAGCAAGGTGAAAAT+AGG 0.318303 5_3:-44650999 Msa0813630:three_prime_UTR
TCATTTGCTTGCATCAAATC+TGG 0.334433 5_3:-44650839 Msa0813630:three_prime_UTR
TTCACTGTATCTGTCCGTTT+TGG 0.334866 5_3:+44652676 None:intergenic
CAGAAAATGAAGAGACAAAA+AGG 0.343519 5_3:+44653801 None:intergenic
AAGAGACTCACCCGATTTGA+TGG 0.345881 5_3:-44653639 Msa0813630:CDS
TAGTGGCAATGAAAGGAATT+TGG 0.346079 5_3:+44653699 None:intergenic
TTGCCCGATCAATCCTCTTT+CGG 0.346959 5_3:-44654250 Msa0813630:CDS
GAAATCCCCTTCCACATTCA+TGG 0.358343 5_3:+44654722 None:intergenic
ACGATAAAGCTAGAGTTATA+AGG 0.381232 5_3:-44652700 Msa0813630:CDS
CCTGTCCTTGCTGCGATCAT+TGG 0.382520 5_3:-44655335 Msa0813630:CDS
CTTTCGGCCTGGTGGGCCAC+TGG 0.385890 5_3:-44654234 Msa0813630:CDS
GATGGATTATGAGGCTAAAC+AGG 0.389943 5_3:-44653621 Msa0813630:intron
ATGTAAACACCAACTAATAT+TGG 0.393817 5_3:-44650809 Msa0813630:three_prime_UTR
AACAAAGTCAAGAAGTCATT+GGG 0.395929 5_3:-44654571 Msa0813630:CDS
AAATAAATAATGGAGTAACT+TGG 0.396916 5_3:+44650873 None:intergenic
AAAATAACGAGAAAATTTAG+AGG 0.397855 5_3:+44657085 None:intergenic
CAATTTACCCCAACAGTTTG+AGG 0.402208 5_3:+44653118 None:intergenic
GACATACTCCTCAAACTGTT+GGG 0.404387 5_3:-44653126 Msa0813630:CDS
AGACAAACAAATGATGTAAC+AGG 0.406354 5_3:-44652628 Msa0813630:intron
GGGGTTATGACAGTGTTGTT+TGG 0.412400 5_3:-44653676 Msa0813630:CDS
GGGTCACCAATAACAACAAT+AGG 0.412558 5_3:+44656828 None:intergenic
TGCCAAGATGGGTCTGCTGC+TGG 0.415396 5_3:+44651114 None:intergenic
CTTCCACATTCATGGTCTCA+TGG 0.416944 5_3:+44654730 None:intergenic
AATTAAGAACCAATATTAGT+TGG 0.423047 5_3:+44650800 None:intergenic
ATGACAGTGTTGTTTGGAAT+CGG 0.427904 5_3:-44653670 Msa0813630:CDS
ACCCGATTTGATGGATTATG+AGG 0.428181 5_3:-44653630 Msa0813630:CDS
CACTGGCGTGTGAGCTTGCA+AGG 0.436226 5_3:-44654217 Msa0813630:CDS
TTTCTCTAATTTCAGAAGCC+TGG 0.442448 5_3:-44653839 Msa0813630:intron
AGCTAGATATGCACTTGAAA+TGG 0.443839 5_3:-44655875 Msa0813630:CDS
TCAATAATTCTGAAGATGAC+TGG 0.446589 5_3:-44654647 Msa0813630:CDS
GGAAGAAACATTTACCGGTT+GGG 0.451567 5_3:-44654625 Msa0813630:CDS
GTAAATACAATTGTAGCATA+TGG 0.452563 5_3:-44652878 Msa0813630:CDS
CGAGGATGAGGGTGAGAAGA+TGG 0.453112 5_3:+44656960 None:intergenic
GAGGTGTTGTTACGAGGATG+AGG 0.453517 5_3:+44656948 None:intergenic
TTGCAGAATTGCGGGCATAC+AGG 0.453904 5_3:-44651227 Msa0813630:intron
GAACAAAGTCAAGAAGTCAT+TGG 0.454433 5_3:-44654572 Msa0813630:CDS
ATGTGGGAAAATAGGAAAGA+TGG 0.454557 5_3:-44650962 Msa0813630:three_prime_UTR
GGACAGATACAGTGAACTTC+AGG 0.454584 5_3:-44652669 Msa0813630:CDS
AGCCTCATAATCCATCAAAT+CGG 0.455449 5_3:+44653628 None:intergenic
CTCCAGCAGCAGACCCATCT+TGG 0.459002 5_3:-44651116 Msa0813630:three_prime_UTR
TGTGGGAAAATAGGAAAGAT+GGG 0.461804 5_3:-44650961 Msa0813630:three_prime_UTR
ATAAATCAAAATACATAGAA+TGG 0.465272 5_3:-44657018 Msa0813630:exon
GACTGGGAAGAAACATTTAC+CGG 0.465497 5_3:-44654630 Msa0813630:CDS
AATCCTTTGAACTGCCAAGA+TGG 0.468867 5_3:+44651102 None:intergenic
CGATCAATCCTCTTTCGGCC+TGG 0.470126 5_3:-44654245 Msa0813630:CDS
GCTGGTGTGTTGAGCTCTGA+TGG 0.477454 5_3:-44655853 Msa0813630:CDS
TGAGTAGTTGGAGATTTACA+TGG 0.480831 5_3:-44655910 Msa0813630:intron
CAAGAAGTCATTGGGGACCT+TGG 0.485464 5_3:-44654563 Msa0813630:CDS
GCCTCATAATCCATCAAATC+GGG 0.487018 5_3:+44653629 None:intergenic
CTCAGATACATCAACCCAAC+CGG 0.488269 5_3:+44654611 None:intergenic
CCTGGTCGCACTATTCTCGC+TGG 0.489201 5_3:-44656786 Msa0813630:intron
AGCATATGGCGCGTAGATGT+TGG 0.492916 5_3:-44652864 Msa0813630:CDS
ATTATTAGGACAGAGACAAA+AGG 0.495750 5_3:-44654279 Msa0813630:intron
TAATCTTATAACAAATTGCT+TGG 0.498829 5_3:-44657139 Msa0813630:five_prime_UTR
CAATCCTCTTTCGGCCTGGT+GGG 0.501687 5_3:-44654241 Msa0813630:CDS
TATTAGGTGTTGATTCAACT+TGG 0.506397 5_3:-44655394 Msa0813630:intron
AAATTCCTTTCATTGCCACT+AGG 0.509689 5_3:-44653697 Msa0813630:CDS
GTGGCCCACCAGGCCGAAAG+AGG 0.510742 5_3:+44654237 None:intergenic
GTCGACTTATTCTAGTCACT+TGG 0.512508 5_3:-44651168 Msa0813630:three_prime_UTR
TCAATCCTCTTTCGGCCTGG+TGG 0.518213 5_3:-44654242 Msa0813630:CDS
AAGGCATGGTGTTGCACTCA+AGG 0.519563 5_3:-44654198 Msa0813630:CDS
GGACATACTCCTCAAACTGT+TGG 0.520775 5_3:-44653127 Msa0813630:CDS
AATAAATAATGGAGTAACTT+GGG 0.521681 5_3:+44650874 None:intergenic
ATCCTTTGAACTGCCAAGAT+GGG 0.522578 5_3:+44651103 None:intergenic
CCAATGATCGCAGCAAGGAC+AGG 0.523343 5_3:+44655335 None:intergenic
TTGCACTCAAGGTTAATGAC+TGG 0.526498 5_3:-44654187 Msa0813630:CDS
TATAACAAATTGCTTGGCTG+AGG 0.528207 5_3:-44657133 Msa0813630:five_prime_UTR
CAGGCCGAAAGAGGATTGAT+CGG 0.532500 5_3:+44654246 None:intergenic
AATACCTTCACTAAATTCCA+AGG 0.532662 5_3:+44654546 None:intergenic
GACCCATCTTGGCAGTTCAA+AGG 0.534840 5_3:-44651105 Msa0813630:three_prime_UTR
GGGAAGAAACATTTACCGGT+TGG 0.536242 5_3:-44654626 Msa0813630:CDS
CAATAATTCTGAAGATGACT+GGG 0.536582 5_3:-44654646 Msa0813630:CDS
TGATGCTAAGGCAATGGTGG+TGG 0.540164 5_3:-44653149 Msa0813630:CDS
AATTCCTTTCATTGCCACTA+GGG 0.544604 5_3:-44653696 Msa0813630:CDS
AGGTGTTGTTACGAGGATGA+GGG 0.544767 5_3:+44656949 None:intergenic
TTGCAGCGTTTCTTCAAGAA+CGG 0.547457 5_3:+44653177 None:intergenic
AATGACTGGGTCTTCTGTCA+TGG 0.548088 5_3:-44654173 Msa0813630:CDS
AGGCCGAAAGAGGATTGATC+GGG 0.552133 5_3:+44654247 None:intergenic
CCAGGAGCAGAAACAAAAGT+TGG 0.553258 5_3:+44656804 None:intergenic
TGAGACCATGAATGTGGAAG+GGG 0.554110 5_3:-44654727 Msa0813630:CDS
TTCAGATATGTTGATTCTGG+AGG 0.554414 5_3:-44654702 Msa0813630:CDS
TAGAGTTATAAGGACCAAAA+CGG 0.555374 5_3:-44652690 Msa0813630:CDS
GAAAGAGAGGTGTTGTTACG+AGG 0.555547 5_3:+44656942 None:intergenic
GCTGCAAGCAGTTGATGCTA+AGG 0.559445 5_3:-44653161 Msa0813630:CDS
AGGATGCACAAGAATAAATG+TGG 0.560856 5_3:-44650979 Msa0813630:three_prime_UTR
ACTGACCGTGGTGAGGAAGA+AGG 0.565272 5_3:+44654147 None:intergenic
GCTCTGATGGTCAAGACTTG+TGG 0.566662 5_3:-44655840 Msa0813630:CDS
TCACACGCCAGTGGCCCACC+AGG 0.567392 5_3:+44654227 None:intergenic
TGCACTCAAGGTTAATGACT+GGG 0.567545 5_3:-44654186 Msa0813630:CDS
ATAGTACTGTCATTCTCACT+TGG 0.567957 5_3:+44653722 None:intergenic
GGAGCAGAAACAAAAGTTGG+AGG 0.570280 5_3:+44656807 None:intergenic
TTATTAGGACAGAGACAAAA+GGG 0.571241 5_3:-44654278 Msa0813630:intron
AGATATGCACTTGAAATGGC+TGG 0.572444 5_3:-44655871 Msa0813630:CDS
GATGGTCAAGACTTGTGGAC+TGG 0.574733 5_3:-44655835 Msa0813630:CDS
GCGTGTGAGCTTGCAAGGCA+TGG 0.576777 5_3:-44654212 Msa0813630:CDS
CATGAGACCATGAATGTGGA+AGG 0.579915 5_3:-44654729 Msa0813630:CDS
TGACATGAAAATTGAAAGCA+AGG 0.585172 5_3:-44651009 Msa0813630:three_prime_UTR
TCTTGAATTAAGGACTCCAC+TGG 0.588049 5_3:+44652836 None:intergenic
GGGACCTTGGAATTTAGTGA+AGG 0.593234 5_3:-44654550 Msa0813630:intron
TAACCCCTAGTGGCAATGAA+AGG 0.595768 5_3:+44653692 None:intergenic
CCAGCGAGAATAGTGCGACC+AGG 0.596339 5_3:+44656786 None:intergenic
ACAGGAGTAAAGAGCAACAT+TGG 0.596602 5_3:-44651209 Msa0813630:three_prime_UTR
GATAAACAAGCGAAATCGAA+AGG 0.596790 5_3:-44655313 Msa0813630:CDS
ATTCCTTTCATTGCCACTAG+GGG 0.605294 5_3:-44653695 Msa0813630:CDS
GGAAAATAGGAAAGATGGGG+AGG 0.607721 5_3:-44650957 Msa0813630:three_prime_UTR
GGGTGAGAAGATGGTGAGAG+TGG 0.608294 5_3:+44656969 None:intergenic
TAGTGATACAATTTGAACAC+AGG 0.609169 5_3:-44651063 Msa0813630:three_prime_UTR
ATGAGACCATGAATGTGGAA+GGG 0.617703 5_3:-44654728 Msa0813630:CDS
GAGCAGAAACAAAAGTTGGA+GGG 0.628318 5_3:+44656808 None:intergenic
ACATACTCCTCAAACTGTTG+GGG 0.629092 5_3:-44653125 Msa0813630:CDS
GGGTTGATGTATCTGAGAAG+TGG 0.629338 5_3:-44654605 Msa0813630:CDS
GGCGGCCTTCTTCCTCACCA+CGG 0.632687 5_3:-44654152 Msa0813630:intron
GGATGCACAAGAATAAATGT+GGG 0.634758 5_3:-44650978 Msa0813630:three_prime_UTR
CTTGCAAGCTCACACGCCAG+TGG 0.635650 5_3:+44654218 None:intergenic
TTTATCCAATGATCGCAGCA+AGG 0.638421 5_3:+44655330 None:intergenic
GTAAAATACTGACCGTGGTG+AGG 0.638720 5_3:+44654140 None:intergenic
AGGATGAAGATAATATTACC+AGG 0.651850 5_3:+44653821 None:intergenic
TAGTTGCGTATGGTTTAGAG+CGG 0.656501 5_3:-44653778 Msa0813630:CDS
AGCAGTTGATGCTAAGGCAA+TGG 0.660163 5_3:-44653155 Msa0813630:CDS
CTTGGAGATATATTAGATCG+AGG 0.662741 5_3:-44655376 Msa0813630:CDS
GATGCTAAGGCAATGGTGGT+GGG 0.662923 5_3:-44653148 Msa0813630:CDS
GGTCAAGACTTGTGGACTGG+TGG 0.662970 5_3:-44655832 Msa0813630:CDS
AACACTGTCATAACCCCTAG+TGG 0.665651 5_3:+44653682 None:intergenic
AAACCATGAGACCATGAATG+TGG 0.677540 5_3:-44654733 Msa0813630:CDS
AAACAAGCGAAATCGAAAGG+TGG 0.681777 5_3:-44655310 Msa0813630:CDS
AGTCCTTAATTCAAGACCAG+AGG 0.683122 5_3:-44652829 Msa0813630:intron
CAGATACAGTGAACTTCAGG+CGG 0.688619 5_3:-44652666 Msa0813630:CDS
GACTGGGTCTTCTGTCATGG+CGG 0.692152 5_3:-44654170 Msa0813630:CDS
GTAGATGTTGGAATGTCCAG+TGG 0.693208 5_3:-44652852 Msa0813630:CDS
GAAAATAGGAAAGATGGGGA+GGG 0.694803 5_3:-44650956 Msa0813630:three_prime_UTR
GTGGGAAAATAGGAAAGATG+GGG 0.695193 5_3:-44650960 Msa0813630:three_prime_UTR
AGTTGATGCTAAGGCAATGG+TGG 0.697830 5_3:-44653152 Msa0813630:CDS
AAGTGACTAGAATAAGTCGA+CGG 0.712795 5_3:+44651170 None:intergenic
TGAACAAAGAAGTGTCTGAG+TGG 0.728833 5_3:-44653754 Msa0813630:CDS
ACAAAGTCAAGAAGTCATTG+GGG 0.742521 5_3:-44654570 Msa0813630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATAATTTTTTTAAATTT+TGG - chr5_3:44655694-44655713 Msa0813630:intron 0.0%
!!! CATATTAATTCTTTTTTTTA+AGG - chr5_3:44651548-44651567 Msa0813630:intron 10.0%
!!! CTATTTAATTTAGATAAAAA+TGG + chr5_3:44653068-44653087 None:intergenic 10.0%
!!! TTCAATTAATTTTCAATAAA+TGG - chr5_3:44653133-44653152 Msa0813630:CDS 10.0%
!!! TAATTTTTTTAAATTTTGGT+TGG - chr5_3:44655698-44655717 Msa0813630:intron 10.0%
!!! AATTTTTTTAAATTTTGGTT+GGG - chr5_3:44655699-44655718 Msa0813630:intron 10.0%
!!! AAGATAAAATTAAATTGTTT+TGG - chr5_3:44656033-44656052 Msa0813630:intron 10.0%
!! GTTCATAAAAAAATAAATAA+TGG + chr5_3:44657052-44657071 None:intergenic 10.0%
!! ATAAATCAAAATACATAGAA+TGG - chr5_3:44650894-44650913 Msa0813630:three_prime_UTR 15.0%
!! AAATAAGCAAAATTAAGATA+TGG + chr5_3:44651169-44651188 None:intergenic 15.0%
!!! TCTTAATTTTGCTTATTTTT+TGG - chr5_3:44651171-44651190 Msa0813630:three_prime_UTR 15.0%
!! CAAATAATTCATTTCAAAAA+AGG + chr5_3:44652728-44652747 None:intergenic 15.0%
!! AAACTTCATAATAATAACAT+GGG + chr5_3:44653045-44653064 None:intergenic 15.0%
!! TCTAAGCTAAAAATATTATA+TGG - chr5_3:44654410-44654429 Msa0813630:intron 15.0%
!! TAATCTTATAACAAATTGCT+TGG - chr5_3:44650773-44650792 Msa0813630:three_prime_UTR 20.0%
!! AAAATAACGAGAAAATTTAG+AGG + chr5_3:44650830-44650849 None:intergenic 20.0%
!! TATTAGTGTATTAAAATCAC+AGG + chr5_3:44651882-44651901 None:intergenic 20.0%
!! GAAACTTCATAATAATAACA+TGG + chr5_3:44653046-44653065 None:intergenic 20.0%
!! TTGAATTAGGAATTTATTCT+TGG + chr5_3:44653434-44653453 None:intergenic 20.0%
!! ATTCCTAATTCAAACTAATT+TGG - chr5_3:44653441-44653460 Msa0813630:intron 20.0%
!!! AATATTTTTAGCTTAGACAA+GGG + chr5_3:44654407-44654426 None:intergenic 20.0%
!!! TAATATTTTTAGCTTAGACA+AGG + chr5_3:44654408-44654427 None:intergenic 20.0%
!! AATAATGAAAAGTTACAGAA+AGG + chr5_3:44654525-44654544 None:intergenic 20.0%
!! TTAAGTCAACAAATTTAACA+TGG - chr5_3:44654543-44654562 Msa0813630:intron 20.0%
!! AACAAATTTAACATGGTATA+GGG - chr5_3:44654550-44654569 Msa0813630:intron 20.0%
!! AACTCAATAATTCAATATTC+AGG - chr5_3:44654706-44654725 Msa0813630:CDS 20.0%
!!! TTTTTCTTTAGTATAGATTG+TGG + chr5_3:44654872-44654891 None:intergenic 20.0%
!! GATTTATAATGTAAAGATTG+TGG + chr5_3:44654898-44654917 None:intergenic 20.0%
!!! TTTTCATTGGAAATATACAT+TGG - chr5_3:44655380-44655399 Msa0813630:CDS 20.0%
!!! AATAAATAATGGAGTAACTT+GGG + chr5_3:44657041-44657060 None:intergenic 20.0%
!!! AAATAAATAATGGAGTAACT+TGG + chr5_3:44657042-44657061 None:intergenic 20.0%
!! AATTAAGAACCAATATTAGT+TGG + chr5_3:44657115-44657134 None:intergenic 20.0%
!! TCAATCTTTTCGTAGTAAAT+GGG - chr5_3:44650851-44650870 Msa0813630:three_prime_UTR 25.0%
!!! AAGTACTTGATGATGTTTTA+AGG + chr5_3:44651059-44651078 None:intergenic 25.0%
!! TTGAAACCTATTGTTGTTAT+TGG - chr5_3:44651078-44651097 Msa0813630:three_prime_UTR 25.0%
! TATAAACTATTATCTCAGCT+TGG - chr5_3:44651634-44651653 Msa0813630:intron 25.0%
! CTAGTATTGTGTTAGAAATA+TGG - chr5_3:44651690-44651709 Msa0813630:intron 25.0%
! TTGTGTTAGAAATATGGAAT+TGG - chr5_3:44651696-44651715 Msa0813630:intron 25.0%
! ACAAGTGATTAAAATTTCTG+TGG - chr5_3:44651844-44651863 Msa0813630:intron 25.0%
!!! ATTTTTTTCTTCTGAGTAGT+TGG - chr5_3:44651990-44652009 Msa0813630:intron 25.0%
! AGTACTATAAACAGTAAGAA+TGG + chr5_3:44652355-44652374 None:intergenic 25.0%
! TTGAATCAACACCTAATATA+CGG + chr5_3:44652516-44652535 None:intergenic 25.0%
! TTAAGGAAATAAGCTGAAAA+TGG + chr5_3:44652820-44652839 None:intergenic 25.0%
!! GTCTTTAACATTTGGTAATT+AGG + chr5_3:44652967-44652986 None:intergenic 25.0%
! CTATTGTTGTCTTTAACATT+TGG + chr5_3:44652975-44652994 None:intergenic 25.0%
!! TTGCCAAATTAGTTTGAATT+AGG + chr5_3:44653447-44653466 None:intergenic 25.0%
! TCATGTTAAACAAAACCAAA+AGG + chr5_3:44653801-44653820 None:intergenic 25.0%
! TCACTATCTTGAATTGTATT+TGG - chr5_3:44653869-44653888 Msa0813630:intron 25.0%
! AATCAATTCAAGATACAGAT+GGG + chr5_3:44654009-44654028 None:intergenic 25.0%
!! TGATTCAACAAATTTGAAAC+AGG + chr5_3:44654049-44654068 None:intergenic 25.0%
! TTGTACAGTATGTGATTAAT+AGG - chr5_3:44654337-44654356 Msa0813630:intron 25.0%
! CAACAAATTTAACATGGTAT+AGG - chr5_3:44654549-44654568 Msa0813630:intron 25.0%
! AATAATTCCAAGAATGCTTA+AGG + chr5_3:44654836-44654855 None:intergenic 25.0%
! GTAAATACAATTGTAGCATA+TGG - chr5_3:44655034-44655053 Msa0813630:intron 25.0%
! CAATGAAAAGAACTTTCTTT+CGG + chr5_3:44655369-44655388 None:intergenic 25.0%
! TGAAACATTCCATCTAATAA+AGG - chr5_3:44655427-44655446 Msa0813630:intron 25.0%
! GAAACATTCCATCTAATAAA+GGG - chr5_3:44655428-44655447 Msa0813630:intron 25.0%
!! TGATTGATTTCTGTATATCA+TGG - chr5_3:44655612-44655631 Msa0813630:intron 25.0%
! AAAGATAGTGCAATAACAAA+AGG - chr5_3:44655658-44655677 Msa0813630:intron 25.0%
!! GATGGCTTCTAAAAAATAAA+TGG + chr5_3:44655756-44655775 None:intergenic 25.0%
!!! GTTGTTTCCATAAACTATTT+TGG - chr5_3:44655899-44655918 Msa0813630:CDS 25.0%
! AAGTTCTCCAAAATAGTTTA+TGG + chr5_3:44655909-44655928 None:intergenic 25.0%
! GAACTTATAAAAACAGCTAA+TGG + chr5_3:44655966-44655985 None:intergenic 25.0%
!!! GTTGTTTCCATAAACTATTT+TGG - chr5_3:44655899-44655918 Msa0813630:CDS 25.0%
! AAGTTCTCCAAAATAGTTTA+TGG + chr5_3:44655909-44655928 None:intergenic 25.0%
!!! AAGCTTTTTTCAGCTTAATT+TGG + chr5_3:44656101-44656120 None:intergenic 25.0%
! GAACTTATAAAAACAGCTAA+TGG + chr5_3:44655966-44655985 None:intergenic 25.0%
!!! TAAGTTTTGTGATACTGTTT+TGG + chr5_3:44656158-44656177 None:intergenic 25.0%
! TTGTTCTTGAAACAAAATCA+TGG + chr5_3:44656246-44656265 None:intergenic 25.0%
!!! GTTTTTCCAAACTGTTTTTA+CGG + chr5_3:44656282-44656301 None:intergenic 25.0%
! TTTGGACCAATATTGTTAAA+TGG - chr5_3:44656369-44656388 Msa0813630:intron 25.0%
!!! TTTATGTTTTTGCAGAATTG+CGG - chr5_3:44656676-44656695 Msa0813630:intron 25.0%
! AAGAATAAATGTGGGAAAAT+AGG - chr5_3:44656942-44656961 Msa0813630:CDS 25.0%
! ATGTAAACACCAACTAATAT+TGG - chr5_3:44657103-44657122 Msa0813630:five_prime_UTR 25.0%
! CTCAATCTTTTCGTAGTAAA+TGG - chr5_3:44650850-44650869 Msa0813630:three_prime_UTR 30.0%
GCAAAATTAAGATATGGAAG+AGG + chr5_3:44651163-44651182 None:intergenic 30.0%
TAGCATAACTTTGACATCAT+AGG + chr5_3:44651317-44651336 None:intergenic 30.0%
AAAAAAAAGTTCTGCAACAG+CGG + chr5_3:44651491-44651510 None:intergenic 30.0%
!!! TTACTGTTAGCTGTTTTTGT+TGG - chr5_3:44651745-44651764 Msa0813630:intron 30.0%
ATGCTTACTGTCTTTCAAAA+TGG - chr5_3:44652112-44652131 Msa0813630:intron 30.0%
!! TACAAAGTGTTGTGAAATAG+CGG - chr5_3:44652247-44652266 Msa0813630:intron 30.0%
ACTATAAACAGTAAGAATGG+AGG + chr5_3:44652352-44652371 None:intergenic 30.0%
!! TTACTTTTCCTCCGTATATT+AGG - chr5_3:44652502-44652521 Msa0813630:intron 30.0%
!! TATTAGGTGTTGATTCAACT+TGG - chr5_3:44652518-44652537 Msa0813630:intron 30.0%
!! TGTTTCAGGTTTGTAATTTG+TGG - chr5_3:44652630-44652649 Msa0813630:three_prime_UTR 30.0%
ATTAAAGCTGCTATCTCTAA+GGG - chr5_3:44652702-44652721 Msa0813630:CDS 30.0%
AGTTTCACAAATGTATACTC+TGG + chr5_3:44652761-44652780 None:intergenic 30.0%
TTAAGATGTTTAGCCAAACA+AGG - chr5_3:44652941-44652960 Msa0813630:intron 30.0%
!! GATTTCAGATATGTTGATTC+TGG - chr5_3:44653207-44653226 Msa0813630:intron 30.0%
TGATGAATGTAGTGATTTCT+TGG - chr5_3:44653236-44653255 Msa0813630:intron 30.0%
! TCAATAATTCTGAAGATGAC+TGG - chr5_3:44653265-44653284 Msa0813630:intron 30.0%
! CAATAATTCTGAAGATGACT+GGG - chr5_3:44653266-44653285 Msa0813630:intron 30.0%
AACAAAGTCAAGAAGTCATT+GGG - chr5_3:44653341-44653360 Msa0813630:intron 30.0%
AATACCTTCACTAAATTCCA+AGG + chr5_3:44653369-44653388 None:intergenic 30.0%
GGGTCATATAGACAAAATTT+CGG - chr5_3:44653525-44653544 Msa0813630:intron 30.0%
! GATGAAGTTTTCCGATTATT+AGG - chr5_3:44653619-44653638 Msa0813630:intron 30.0%
TTTGTCTCTGTCCTAATAAT+CGG + chr5_3:44653633-44653652 None:intergenic 30.0%
ATTATTAGGACAGAGACAAA+AGG - chr5_3:44653633-44653652 Msa0813630:CDS 30.0%
TTATTAGGACAGAGACAAAA+GGG - chr5_3:44653634-44653653 Msa0813630:CDS 30.0%
! TCAGTATTTTACTGTCCTTT+TGG - chr5_3:44653783-44653802 Msa0813630:CDS 30.0%
ATCAATTCAAGATACAGATG+GGG + chr5_3:44654008-44654027 None:intergenic 30.0%
CAATCAATTCAAGATACAGA+TGG + chr5_3:44654010-44654029 None:intergenic 30.0%
AGGATGAAGATAATATTACC+AGG + chr5_3:44654094-44654113 None:intergenic 30.0%
CAGAAAATGAAGAGACAAAA+AGG + chr5_3:44654114-44654133 None:intergenic 30.0%
ACAGTATGTGATTAATAGGA+AGG - chr5_3:44654341-44654360 Msa0813630:intron 30.0%
!! ATTAATAGGAAGGTATTGTG+CGG - chr5_3:44654351-44654370 Msa0813630:intron 30.0%
AATGAAAAGTTACAGAAAGG+TGG + chr5_3:44654522-44654541 None:intergenic 30.0%
GCTACAATTGTATTTACTGT+AGG + chr5_3:44655031-44655050 None:intergenic 30.0%
CTGTAAACTACAATAACTAC+TGG + chr5_3:44655152-44655171 None:intergenic 30.0%
ACGATAAAGCTAGAGTTATA+AGG - chr5_3:44655212-44655231 Msa0813630:intron 30.0%
TAGAGTTATAAGGACCAAAA+CGG - chr5_3:44655222-44655241 Msa0813630:intron 30.0%
AGACAAACAAATGATGTAAC+AGG - chr5_3:44655284-44655303 Msa0813630:intron 30.0%
! CGAAAGAAAGTTCTTTTCAT+TGG - chr5_3:44655367-44655386 Msa0813630:CDS 30.0%
ATTGCATTACTGTCAAACTA+TGG - chr5_3:44655528-44655547 Msa0813630:intron 30.0%
TTGCATTACTGTCAAACTAT+GGG - chr5_3:44655529-44655548 Msa0813630:intron 30.0%
CATTATTGAATTTCGCTGAT+TGG + chr5_3:44655568-44655587 None:intergenic 30.0%
TATCATGGAATTTCATCGAA+TGG - chr5_3:44655627-44655646 Msa0813630:intron 30.0%
!!! ATTTTGGTTGGGTTTTCAAT+AGG - chr5_3:44655710-44655729 Msa0813630:intron 30.0%
!! AATGGATTAAATGATGTCAC+TGG + chr5_3:44655738-44655757 None:intergenic 30.0%
!!! ACTGTTTTTACGGTTCAATT+TGG + chr5_3:44656272-44656291 None:intergenic 30.0%
ATTGAACCGTAAAAACAGTT+TGG - chr5_3:44656273-44656292 Msa0813630:intron 30.0%
AGGATAAACCATGAATTGTT+CGG + chr5_3:44656304-44656323 None:intergenic 30.0%
!! TTATGTTTTTGCAGAATTGC+GGG - chr5_3:44656677-44656696 Msa0813630:intron 30.0%
TAGTGATACAATTTGAACAC+AGG - chr5_3:44656849-44656868 Msa0813630:CDS 30.0%
! TCAATTTTCATGTCATTCAC+AGG + chr5_3:44656898-44656917 None:intergenic 30.0%
TGACATGAAAATTGAAAGCA+AGG - chr5_3:44656903-44656922 Msa0813630:CDS 30.0%
ATTGAAAGCAAGGTGAAAAT+AGG - chr5_3:44656913-44656932 Msa0813630:CDS 30.0%
TATAACAAATTGCTTGGCTG+AGG - chr5_3:44650779-44650798 Msa0813630:three_prime_UTR 35.0%
AGAAGAAGAAGAAGAAAGAG+AGG + chr5_3:44650986-44651005 None:intergenic 35.0%
TGATACTATCACAATTGCAG+TGG - chr5_3:44651439-44651458 Msa0813630:intron 35.0%
AAAAAAAGTTCTGCAACAGC+GGG + chr5_3:44651490-44651509 None:intergenic 35.0%
TTTAACCCAGGGAATTATCA+AGG + chr5_3:44651589-44651608 None:intergenic 35.0%
TAACACAATACTAGACAGAG+AGG + chr5_3:44651684-44651703 None:intergenic 35.0%
TGAGTAGTTGGAGATTTACA+TGG - chr5_3:44652002-44652021 Msa0813630:intron 35.0%
AGCTAGATATGCACTTGAAA+TGG - chr5_3:44652037-44652056 Msa0813630:intron 35.0%
AATCAACACCTAATATACGG+AGG + chr5_3:44652513-44652532 None:intergenic 35.0%
CTTGGAGATATATTAGATCG+AGG - chr5_3:44652536-44652555 Msa0813630:intron 35.0%
GATAAACAAGCGAAATCGAA+AGG - chr5_3:44652599-44652618 Msa0813630:intron 35.0%
CATTAAAGCTGCTATCTCTA+AGG - chr5_3:44652701-44652720 Msa0813630:CDS 35.0%
GCTGAAAATGGACATATCAT+AGG + chr5_3:44652808-44652827 None:intergenic 35.0%
CTTATTTCCTTAAACTCTCC+AGG - chr5_3:44652827-44652846 Msa0813630:intron 35.0%
!! TTTGGTAATTAGGCCTTGTT+TGG + chr5_3:44652957-44652976 None:intergenic 35.0%
CAACATAATGCGTAATGAGT+AGG + chr5_3:44653016-44653035 None:intergenic 35.0%
! TAAATGGTTCTGCTTTGTCT+AGG - chr5_3:44653149-44653168 Msa0813630:CDS 35.0%
TTCTGCTTTGTCTAGGTAAA+TGG - chr5_3:44653156-44653175 Msa0813630:CDS 35.0%
!! TTCAGATATGTTGATTCTGG+AGG - chr5_3:44653210-44653229 Msa0813630:intron 35.0%
GAACAAAGTCAAGAAGTCAT+TGG - chr5_3:44653340-44653359 Msa0813630:intron 35.0%
ACAAAGTCAAGAAGTCATTG+GGG - chr5_3:44653342-44653361 Msa0813630:intron 35.0%
!! TTATTCCAGCACGTTGATTT+GGG + chr5_3:44653499-44653518 None:intergenic 35.0%
TCCTTCACTAGAATTAACTG+CGG - chr5_3:44653934-44653953 Msa0813630:intron 35.0%
!! TGTTTTGAGCTAAGGGTAAA+AGG + chr5_3:44653970-44653989 None:intergenic 35.0%
!! AGGCTTCTGAAATTAGAGAA+AGG + chr5_3:44654074-44654093 None:intergenic 35.0%
TTTCTCTAATTTCAGAAGCC+TGG - chr5_3:44654073-44654092 Msa0813630:intron 35.0%
! TCATTTTCTGTAGTTGCGTA+TGG - chr5_3:44654124-44654143 Msa0813630:intron 35.0%
ATAGTACTGTCATTCTCACT+TGG + chr5_3:44654193-44654212 None:intergenic 35.0%
TAGTGGCAATGAAAGGAATT+TGG + chr5_3:44654216-44654235 None:intergenic 35.0%
AAATTCCTTTCATTGCCACT+AGG - chr5_3:44654215-44654234 Msa0813630:CDS 35.0%
AATTCCTTTCATTGCCACTA+GGG - chr5_3:44654216-44654235 Msa0813630:CDS 35.0%
!! ATGACAGTGTTGTTTGGAAT+CGG - chr5_3:44654242-44654261 Msa0813630:CDS 35.0%
AGCCTCATAATCCATCAAAT+CGG + chr5_3:44654287-44654306 None:intergenic 35.0%
CAATACAAGTCATACTGAGA+CGG + chr5_3:44654675-44654694 None:intergenic 35.0%
GACATTTCCTTAAGCATTCT+TGG - chr5_3:44654826-44654845 Msa0813630:intron 35.0%
!!! AAATGCCAGATGCTTTTTCT+AGG - chr5_3:44654949-44654968 Msa0813630:intron 35.0%
!! TTACCTCTGGTCTTGAATTA+AGG + chr5_3:44655089-44655108 None:intergenic 35.0%
!! CGTCTATAATTTCTAGAACC+TGG + chr5_3:44655195-44655214 None:intergenic 35.0%
!! TAGAAGCACCCTTTATTAGA+TGG + chr5_3:44655439-44655458 None:intergenic 35.0%
ATCCTTTGATCTGTTATAGC+CGG - chr5_3:44655480-44655499 Msa0813630:intron 35.0%
TTAAAGGCAGAATGGCATAA+AGG - chr5_3:44655503-44655522 Msa0813630:intron 35.0%
TTGAAACAGGGCTTAAATGA+TGG + chr5_3:44655774-44655793 None:intergenic 35.0%
!! TTTCTGCAGTTTTTCAACGA+GGG + chr5_3:44655801-44655820 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr5_3:44656193-44656212 Msa0813630:intron 35.0%
TTGTACAAGTTATCCCACTA+GGG + chr5_3:44656219-44656238 None:intergenic 35.0%
TGGAAAAACCGAACAATTCA+TGG - chr5_3:44656293-44656312 Msa0813630:intron 35.0%
TGGTTTATCCTGAACTAAAC+TGG - chr5_3:44656313-44656332 Msa0813630:intron 35.0%
! CCTTAAAACCAGTTTAGTTC+AGG + chr5_3:44656324-44656343 None:intergenic 35.0%
!!! CCTGAACTAAACTGGTTTTA+AGG - chr5_3:44656321-44656340 Msa0813630:intron 35.0%
GGACCAATATTGTTAAATGG+AGG - chr5_3:44656372-44656391 Msa0813630:intron 35.0%
TGGCCTCCATTTAACAATAT+TGG + chr5_3:44656378-44656397 None:intergenic 35.0%
ATATTGTTAAATGGAGGCCA+TGG - chr5_3:44656378-44656397 Msa0813630:intron 35.0%
TCTCCATAGGAAATTTGTGA+AGG - chr5_3:44656416-44656435 Msa0813630:intron 35.0%
CTCCATAGGAAATTTGTGAA+GGG - chr5_3:44656417-44656436 Msa0813630:intron 35.0%
ATCCCTTCACAAATTTCCTA+TGG + chr5_3:44656422-44656441 None:intergenic 35.0%
!!! CAACACTGTTTTGACTAAAC+AGG - chr5_3:44656526-44656545 Msa0813630:intron 35.0%
AGCAACATTGGCCAATTTAT+TGG - chr5_3:44656715-44656734 Msa0813630:intron 35.0%
AAGTGACTAGAATAAGTCGA+CGG + chr5_3:44656745-44656764 None:intergenic 35.0%
AGGATGCACAAGAATAAATG+TGG - chr5_3:44656933-44656952 Msa0813630:CDS 35.0%
GGATGCACAAGAATAAATGT+GGG - chr5_3:44656934-44656953 Msa0813630:CDS 35.0%
ATGTGGGAAAATAGGAAAGA+TGG - chr5_3:44656950-44656969 Msa0813630:CDS 35.0%
TGTGGGAAAATAGGAAAGAT+GGG - chr5_3:44656951-44656970 Msa0813630:CDS 35.0%
TCATTTGCTTGCATCAAATC+TGG - chr5_3:44657073-44657092 Msa0813630:five_prime_UTR 35.0%
GGGTCACCAATAACAACAAT+AGG + chr5_3:44651087-44651106 None:intergenic 40.0%
GAGCAGAAACAAAAGTTGGA+GGG + chr5_3:44651107-44651126 None:intergenic 40.0%
AAGATTCGCGAGCACATTTA+TGG + chr5_3:44651388-44651407 None:intergenic 40.0%
TTAAACCTTTGACGCGAATG+AGG - chr5_3:44651509-44651528 Msa0813630:intron 40.0%
! TTCAGTTCAGCTTTAACCCA+GGG + chr5_3:44651600-44651619 None:intergenic 40.0%
AGATATGCACTTGAAATGGC+TGG - chr5_3:44652041-44652060 Msa0813630:intron 40.0%
AATATAGCACAGTAGCGTTG+CGG - chr5_3:44652271-44652290 Msa0813630:intron 40.0%
TGCAATCTGTGATTGAACAC+TGG - chr5_3:44652317-44652336 Msa0813630:intron 40.0%
GCAATCTGTGATTGAACACT+GGG - chr5_3:44652318-44652337 Msa0813630:intron 40.0%
CAATCTGTGATTGAACACTG+GGG - chr5_3:44652319-44652338 Msa0813630:intron 40.0%
ACAGTAAGAATGGAGGCTAA+TGG + chr5_3:44652345-44652364 None:intergenic 40.0%
TTTATCCAATGATCGCAGCA+AGG + chr5_3:44652585-44652604 None:intergenic 40.0%
AAACAAGCGAAATCGAAAGG+TGG - chr5_3:44652602-44652621 Msa0813630:intron 40.0%
AAGCTATCCTGGAGAGTTTA+AGG + chr5_3:44652837-44652856 None:intergenic 40.0%
TAAACTCTCCAGGATAGCTT+AGG - chr5_3:44652837-44652856 Msa0813630:CDS 40.0%
ACAACAATAGTACACCGCTA+AGG - chr5_3:44652985-44653004 Msa0813630:intron 40.0%
ATGAGTAGGCATATCCTTAG+CGG + chr5_3:44653002-44653021 None:intergenic 40.0%
AAACCATGAGACCATGAATG+TGG - chr5_3:44653179-44653198 Msa0813630:CDS 40.0%
ATGAGACCATGAATGTGGAA+GGG - chr5_3:44653184-44653203 Msa0813630:CDS 40.0%
GACTGGGAAGAAACATTTAC+CGG - chr5_3:44653282-44653301 Msa0813630:intron 40.0%
! GGAAGAAACATTTACCGGTT+GGG - chr5_3:44653287-44653306 Msa0813630:intron 40.0%
!! AGCACGTTGATTTGGGAATT+AGG + chr5_3:44653492-44653511 None:intergenic 40.0%
TAATTCCCAAATCAACGTGC+TGG - chr5_3:44653491-44653510 Msa0813630:intron 40.0%
! CTTATTCCAGCACGTTGATT+TGG + chr5_3:44653500-44653519 None:intergenic 40.0%
CAACGTGCTGGAATAAGTTA+CGG - chr5_3:44653503-44653522 Msa0813630:intron 40.0%
AACGTGCTGGAATAAGTTAC+GGG - chr5_3:44653504-44653523 Msa0813630:intron 40.0%
TTGCACTCAAGGTTAATGAC+TGG - chr5_3:44653725-44653744 Msa0813630:CDS 40.0%
TGCACTCAAGGTTAATGACT+GGG - chr5_3:44653726-44653745 Msa0813630:CDS 40.0%
ACCGCAGTTAATTCTAGTGA+AGG + chr5_3:44653938-44653957 None:intergenic 40.0%
!! GCTCAACTGTTTTGAGCTAA+GGG + chr5_3:44653977-44653996 None:intergenic 40.0%
!! AGCTCAACTGTTTTGAGCTA+AGG + chr5_3:44653978-44653997 None:intergenic 40.0%
TAGTTGCGTATGGTTTAGAG+CGG - chr5_3:44654134-44654153 Msa0813630:intron 40.0%
!! TGAACAAAGAAGTGTCTGAG+TGG - chr5_3:44654158-44654177 Msa0813630:CDS 40.0%
ATTCCTTTCATTGCCACTAG+GGG - chr5_3:44654217-44654236 Msa0813630:CDS 40.0%
!! ACCCGATTTGATGGATTATG+AGG - chr5_3:44654282-44654301 Msa0813630:intron 40.0%
GCCTCATAATCCATCAAATC+GGG + chr5_3:44654286-44654305 None:intergenic 40.0%
!! GATGGATTATGAGGCTAAAC+AGG - chr5_3:44654291-44654310 Msa0813630:intron 40.0%
! TTTAGCTTAGACAAGGGAGA+GGG + chr5_3:44654401-44654420 None:intergenic 40.0%
!!! TTTTAGCTTAGACAAGGGAG+AGG + chr5_3:44654402-44654421 None:intergenic 40.0%
!!! AGTCACGAAGCTAGTTTTCA+GGG + chr5_3:44654499-44654518 None:intergenic 40.0%
TTGCAGCGTTTCTTCAAGAA+CGG + chr5_3:44654738-44654757 None:intergenic 40.0%
GACATACTCCTCAAACTGTT+GGG - chr5_3:44654786-44654805 Msa0813630:intron 40.0%
ACATACTCCTCAAACTGTTG+GGG - chr5_3:44654787-44654806 Msa0813630:intron 40.0%
CAATTTACCCCAACAGTTTG+AGG + chr5_3:44654797-44654816 None:intergenic 40.0%
CTCAAACTGTTGGGGTAAAT+TGG - chr5_3:44654795-44654814 Msa0813630:intron 40.0%
!! ACTGACCTAGAAAAAGCATC+TGG + chr5_3:44654957-44654976 None:intergenic 40.0%
CTAGGTCAGTTAGTGCTTTA+TGG - chr5_3:44654967-44654986 Msa0813630:intron 40.0%
GTCAGTTAGTGCTTTATGGA+TGG - chr5_3:44654971-44654990 Msa0813630:intron 40.0%
TCTTGAATTAAGGACTCCAC+TGG + chr5_3:44655079-44655098 None:intergenic 40.0%
AGTCCTTAATTCAAGACCAG+AGG - chr5_3:44655083-44655102 Msa0813630:intron 40.0%
CAAGACCAGAGGTAAATCAA+AGG - chr5_3:44655094-44655113 Msa0813630:intron 40.0%
GTGTTGTGTTCTTATTCTCC+AGG - chr5_3:44655174-44655193 Msa0813630:intron 40.0%
! TTCACTGTATCTGTCCGTTT+TGG + chr5_3:44655239-44655258 None:intergenic 40.0%
AACCGGCTATAACAGATCAA+AGG + chr5_3:44655485-44655504 None:intergenic 40.0%
GATCTGTTATAGCCGGTTAA+AGG - chr5_3:44655487-44655506 Msa0813630:intron 40.0%
TATGCCATTCTGCCTTTAAC+CGG + chr5_3:44655502-44655521 None:intergenic 40.0%
AACGAGGGCTTATTGAAACA+GGG + chr5_3:44655786-44655805 None:intergenic 40.0%
!! CTTTCTGCAGTTTTTCAACG+AGG + chr5_3:44655802-44655821 None:intergenic 40.0%
GTTGTACAAGTTATCCCACT+AGG + chr5_3:44656220-44656239 None:intergenic 40.0%
! GTCCAAAAAAGCACATAACC+CGG + chr5_3:44656356-44656375 None:intergenic 40.0%
GGTTATTTGACAGTCTCCAT+AGG - chr5_3:44656403-44656422 Msa0813630:intron 40.0%
GCTGCAATGGTGTGTTTATT+GGG - chr5_3:44656464-44656483 Msa0813630:intron 40.0%
CTGCAATGGTGTGTTTATTG+GGG - chr5_3:44656465-44656484 Msa0813630:intron 40.0%
! AGAAACAGTTCGGTTCGTAA+AGG + chr5_3:44656579-44656598 None:intergenic 40.0%
! CGGTTAGTCAAGAAACAGTT+CGG + chr5_3:44656589-44656608 None:intergenic 40.0%
ACAGGAGTAAAGAGCAACAT+TGG - chr5_3:44656703-44656722 Msa0813630:intron 40.0%
TCGACGGCTATCCAATAAAT+TGG + chr5_3:44656729-44656748 None:intergenic 40.0%
! GTCGACTTATTCTAGTCACT+TGG - chr5_3:44656744-44656763 Msa0813630:intron 40.0%
ATCCTTTGAACTGCCAAGAT+GGG + chr5_3:44656812-44656831 None:intergenic 40.0%
AATCCTTTGAACTGCCAAGA+TGG + chr5_3:44656813-44656832 None:intergenic 40.0%
GTGGGAAAATAGGAAAGATG+GGG - chr5_3:44656952-44656971 Msa0813630:CDS 40.0%
GAAAATAGGAAAGATGGGGA+GGG - chr5_3:44656956-44656975 Msa0813630:CDS 40.0%
!! AGGTGTTGTTACGAGGATGA+GGG + chr5_3:44650966-44650985 None:intergenic 45.0%
!! GAAAGAGAGGTGTTGTTACG+AGG + chr5_3:44650973-44650992 None:intergenic 45.0%
GGAGCAGAAACAAAAGTTGG+AGG + chr5_3:44651108-44651127 None:intergenic 45.0%
CCAGGAGCAGAAACAAAAGT+TGG + chr5_3:44651111-44651130 None:intergenic 45.0%
!!! CCAACTTTTGTTTCTGCTCC+TGG - chr5_3:44651108-44651127 Msa0813630:three_prime_UTR 45.0%
AGCAACTATGCGCAATAGCA+AGG + chr5_3:44651286-44651305 None:intergenic 45.0%
TTGATCCTCATTCGCGTCAA+AGG + chr5_3:44651517-44651536 None:intergenic 45.0%
TGACGCGAATGAGGATCAAA+TGG - chr5_3:44651518-44651537 Msa0813630:intron 45.0%
! GTGCTCCTTGATAATTCCCT+GGG - chr5_3:44651581-44651600 Msa0813630:intron 45.0%
! CTTCAGTTCAGCTTTAACCC+AGG + chr5_3:44651601-44651620 None:intergenic 45.0%
TTGCGTTTCCTAAGCTATCC+TGG + chr5_3:44652848-44652867 None:intergenic 45.0%
CTTCCACATTCATGGTCTCA+TGG + chr5_3:44653185-44653204 None:intergenic 45.0%
CATGAGACCATGAATGTGGA+AGG - chr5_3:44653183-44653202 Msa0813630:CDS 45.0%
TGAGACCATGAATGTGGAAG+GGG - chr5_3:44653185-44653204 Msa0813630:CDS 45.0%
GAAATCCCCTTCCACATTCA+TGG + chr5_3:44653193-44653212 None:intergenic 45.0%
GGGAAGAAACATTTACCGGT+TGG - chr5_3:44653286-44653305 Msa0813630:intron 45.0%
CTCAGATACATCAACCCAAC+CGG + chr5_3:44653304-44653323 None:intergenic 45.0%
!! GGGTTGATGTATCTGAGAAG+TGG - chr5_3:44653307-44653326 Msa0813630:intron 45.0%
GGGACCTTGGAATTTAGTGA+AGG - chr5_3:44653362-44653381 Msa0813630:intron 45.0%
ACGTGCTGGAATAAGTTACG+GGG - chr5_3:44653505-44653524 Msa0813630:intron 45.0%
TTGCCCGATCAATCCTCTTT+CGG - chr5_3:44653662-44653681 Msa0813630:CDS 45.0%
AATGACTGGGTCTTCTGTCA+TGG - chr5_3:44653739-44653758 Msa0813630:CDS 45.0%
GTAAAATACTGACCGTGGTG+AGG + chr5_3:44653775-44653794 None:intergenic 45.0%
GGACAGTAAAATACTGACCG+TGG + chr5_3:44653780-44653799 None:intergenic 45.0%
TAACCCCTAGTGGCAATGAA+AGG + chr5_3:44654223-44654242 None:intergenic 45.0%
AACACTGTCATAACCCCTAG+TGG + chr5_3:44654233-44654252 None:intergenic 45.0%
! GGGGTTATGACAGTGTTGTT+TGG - chr5_3:44654236-44654255 Msa0813630:CDS 45.0%
! AAGAGACTCACCCGATTTGA+TGG - chr5_3:44654273-44654292 Msa0813630:CDS 45.0%
!!! CGAAGCTAGTTTTCAGGGAA+AGG + chr5_3:44654494-44654513 None:intergenic 45.0%
!!! GAGTCACGAAGCTAGTTTTC+AGG + chr5_3:44654500-44654519 None:intergenic 45.0%
GGACATACTCCTCAAACTGT+TGG - chr5_3:44654785-44654804 Msa0813630:intron 45.0%
GTAGATGTTGGAATGTCCAG+TGG - chr5_3:44655060-44655079 Msa0813630:intron 45.0%
GGACAGATACAGTGAACTTC+AGG - chr5_3:44655243-44655262 Msa0813630:intron 45.0%
CAGATACAGTGAACTTCAGG+CGG - chr5_3:44655246-44655265 Msa0813630:intron 45.0%
ATAGCCGGTTAAAGGCAGAA+TGG - chr5_3:44655495-44655514 Msa0813630:intron 45.0%
CAACGAGGGCTTATTGAAAC+AGG + chr5_3:44655787-44655806 None:intergenic 45.0%
!!! GGTTTTAAGGTTCAGTGCAC+CGG - chr5_3:44656334-44656353 Msa0813630:intron 45.0%
!!! GTTTTAAGGTTCAGTGCACC+GGG - chr5_3:44656335-44656354 Msa0813630:intron 45.0%
!!! CACCGGGTTATGTGCTTTTT+TGG - chr5_3:44656351-44656370 Msa0813630:intron 45.0%
TTGTTAAATGGAGGCCATGG+CGG - chr5_3:44656381-44656400 Msa0813630:intron 45.0%
GGCTGCAATGGTGTGTTTAT+TGG - chr5_3:44656463-44656482 Msa0813630:intron 45.0%
GTGTTGTGAGTTGTCGATGA+CGG + chr5_3:44656512-44656531 None:intergenic 45.0%
GGAAAATAGGAAAGATGGGG+AGG - chr5_3:44656955-44656974 Msa0813630:CDS 45.0%
! TGCTTGGCTGAGGAGCTTTT+TGG - chr5_3:44650789-44650808 Msa0813630:three_prime_UTR 50.0%
! GCTTGGCTGAGGAGCTTTTT+GGG - chr5_3:44650790-44650809 Msa0813630:three_prime_UTR 50.0%
!! GAGGTGTTGTTACGAGGATG+AGG + chr5_3:44650967-44650986 None:intergenic 50.0%
! CGTGCTCCTTGATAATTCCC+TGG - chr5_3:44651580-44651599 Msa0813630:intron 50.0%
GCTCTGATGGTCAAGACTTG+TGG - chr5_3:44652072-44652091 Msa0813630:intron 50.0%
GATGGTCAAGACTTGTGGAC+TGG - chr5_3:44652077-44652096 Msa0813630:intron 50.0%
GAAAGGTGGAGCTGTGTTTC+AGG - chr5_3:44652616-44652635 Msa0813630:intron 50.0%
CAAGAAGTCATTGGGGACCT+TGG - chr5_3:44653349-44653368 Msa0813630:intron 50.0%
AGGCCGAAAGAGGATTGATC+GGG + chr5_3:44653668-44653687 None:intergenic 50.0%
CAGGCCGAAAGAGGATTGAT+CGG + chr5_3:44653669-44653688 None:intergenic 50.0%
!! AAGGCATGGTGTTGCACTCA+AGG - chr5_3:44653714-44653733 Msa0813630:CDS 50.0%
AGCATATGGCGCGTAGATGT+TGG - chr5_3:44655048-44655067 Msa0813630:intron 50.0%
! GCAGGCCTTTGATTTACCTC+TGG + chr5_3:44655102-44655121 None:intergenic 50.0%
GAACATGTGCAGACTCATGC+AGG + chr5_3:44655120-44655139 None:intergenic 50.0%
CAATCCAAACAGGCCCTAGT+GGG - chr5_3:44656203-44656222 Msa0813630:intron 50.0%
TTATCCCACTAGGGCCTGTT+TGG + chr5_3:44656210-44656229 None:intergenic 50.0%
TGTTAAATGGAGGCCATGGC+GGG - chr5_3:44656382-44656401 Msa0813630:intron 50.0%
GACTGTCAAATAACCCGCCA+TGG + chr5_3:44656398-44656417 None:intergenic 50.0%
CACACCATTGCAGCCTATGA+TGG + chr5_3:44656458-44656477 None:intergenic 50.0%
!! CGATGACGGATGGTGGAATA+TGG + chr5_3:44656498-44656517 None:intergenic 50.0%
!! TGTGAGTTGTCGATGACGGA+TGG + chr5_3:44656508-44656527 None:intergenic 50.0%
AGACACAAGCCAAGCCTATG+GGG + chr5_3:44656618-44656637 None:intergenic 50.0%
CAGACACAAGCCAAGCCTAT+GGG + chr5_3:44656619-44656638 None:intergenic 50.0%
ACAGACACAAGCCAAGCCTA+TGG + chr5_3:44656620-44656639 None:intergenic 50.0%
! TGGCTTGTGTCTGTAGTACG+TGG - chr5_3:44656626-44656645 Msa0813630:intron 50.0%
TTGCAGAATTGCGGGCATAC+AGG - chr5_3:44656685-44656704 Msa0813630:intron 50.0%
GACCCATCTTGGCAGTTCAA+AGG - chr5_3:44656807-44656826 Msa0813630:CDS 50.0%
GGGTGAGAAGATGGTGAGAG+TGG + chr5_3:44650946-44650965 None:intergenic 55.0%
CGAGGATGAGGGTGAGAAGA+TGG + chr5_3:44650955-44650974 None:intergenic 55.0%
! GCTGGTGTGTTGAGCTCTGA+TGG - chr5_3:44652059-44652078 Msa0813630:intron 55.0%
!! GGTCAAGACTTGTGGACTGG+TGG - chr5_3:44652080-44652099 Msa0813630:intron 55.0%
CCAATGATCGCAGCAAGGAC+AGG + chr5_3:44652580-44652599 None:intergenic 55.0%
CCTGTCCTTGCTGCGATCAT+TGG - chr5_3:44652577-44652596 Msa0813630:intron 55.0%
CGATCAATCCTCTTTCGGCC+TGG - chr5_3:44653667-44653686 Msa0813630:CDS 55.0%
TCAATCCTCTTTCGGCCTGG+TGG - chr5_3:44653670-44653689 Msa0813630:CDS 55.0%
CAATCCTCTTTCGGCCTGGT+GGG - chr5_3:44653671-44653690 Msa0813630:CDS 55.0%
GACTGGGTCTTCTGTCATGG+CGG - chr5_3:44653742-44653761 Msa0813630:CDS 55.0%
ACTGACCGTGGTGAGGAAGA+AGG + chr5_3:44653768-44653787 None:intergenic 55.0%
CCACTAGGGCCTGTTTGGAT+TGG + chr5_3:44656205-44656224 None:intergenic 55.0%
CCAATCCAAACAGGCCCTAG+TGG - chr5_3:44656202-44656221 Msa0813630:intron 55.0%
TTGTGAAGGGATGCCTGCCA+TGG - chr5_3:44656430-44656449 Msa0813630:intron 55.0%
TGCAGCCTATGATGGCACCA+TGG + chr5_3:44656450-44656469 None:intergenic 55.0%
! GGTGCCATCATAGGCTGCAA+TGG - chr5_3:44656451-44656470 Msa0813630:intron 55.0%
!! GAGTTGTCGATGACGGATGG+TGG + chr5_3:44656505-44656524 None:intergenic 55.0%
ACTAACCGAGATGCCCCCAT+AGG - chr5_3:44656601-44656620 Msa0813630:intron 55.0%
GACACAAGCCAAGCCTATGG+GGG + chr5_3:44656617-44656636 None:intergenic 55.0%
CCAGCGAGAATAGTGCGACC+AGG + chr5_3:44651129-44651148 None:intergenic 60.0%
CCTGGTCGCACTATTCTCGC+TGG - chr5_3:44651126-44651145 Msa0813630:three_prime_UTR 60.0%
CTTGCAAGCTCACACGCCAG+TGG + chr5_3:44653697-44653716 None:intergenic 60.0%
CACTGGCGTGTGAGCTTGCA+AGG - chr5_3:44653695-44653714 Msa0813630:CDS 60.0%
GCGTGTGAGCTTGCAAGGCA+TGG - chr5_3:44653700-44653719 Msa0813630:CDS 60.0%
TGTCAGTGCAGCGTCGTGTC+TGG + chr5_3:44654465-44654484 None:intergenic 60.0%
!! GCCTGCCATGGTGCCATCAT+AGG - chr5_3:44656442-44656461 Msa0813630:intron 60.0%
GCCTATGATGGCACCATGGC+AGG + chr5_3:44656446-44656465 None:intergenic 60.0%
!! CCAAGCCTATGGGGGCATCT+CGG + chr5_3:44656609-44656628 None:intergenic 60.0%
CTCCAGCAGCAGACCCATCT+TGG - chr5_3:44656796-44656815 Msa0813630:CDS 60.0%
TGCCAAGATGGGTCTGCTGC+TGG + chr5_3:44656801-44656820 None:intergenic 60.0%
GGCGGCCTTCTTCCTCACCA+CGG - chr5_3:44653760-44653779 Msa0813630:CDS 65.0%
CCGAGATGCCCCCATAGGCT+TGG - chr5_3:44656606-44656625 Msa0813630:intron 65.0%
GTGGCCCACCAGGCCGAAAG+AGG + chr5_3:44653678-44653697 None:intergenic 70.0%
! CTTTCGGCCTGGTGGGCCAC+TGG - chr5_3:44653678-44653697 Msa0813630:CDS 70.0%
TCACACGCCAGTGGCCCACC+AGG + chr5_3:44653688-44653707 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 44650770 44657164 44650770 ID=Msa0813630;Name=Msa0813630
chr5_3 mRNA 44650770 44657164 44650770 ID=Msa0813630-mRNA-1;Parent=Msa0813630;Name=Msa0813630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=143|0.88|0.8|1|0.88|0.8|10|497|424
chr5_3 exon 44650770 44651243 44650770 ID=Msa0813630-mRNA-1:exon:13753;Parent=Msa0813630-mRNA-1
chr5_3 exon 44652629 44652738 44652629 ID=Msa0813630-mRNA-1:exon:13752;Parent=Msa0813630-mRNA-1
chr5_3 exon 44652830 44652899 44652830 ID=Msa0813630-mRNA-1:exon:13751;Parent=Msa0813630-mRNA-1
chr5_3 exon 44653118 44653206 44653118 ID=Msa0813630-mRNA-1:exon:13750;Parent=Msa0813630-mRNA-1
chr5_3 exon 44653622 44653846 44653622 ID=Msa0813630-mRNA-1:exon:13749;Parent=Msa0813630-mRNA-1
chr5_3 exon 44654153 44654293 44654153 ID=Msa0813630-mRNA-1:exon:13748;Parent=Msa0813630-mRNA-1
chr5_3 exon 44654551 44654763 44654551 ID=Msa0813630-mRNA-1:exon:13747;Parent=Msa0813630-mRNA-1
chr5_3 exon 44655297 44655410 44655297 ID=Msa0813630-mRNA-1:exon:13746;Parent=Msa0813630-mRNA-1
chr5_3 exon 44655825 44655925 44655825 ID=Msa0813630-mRNA-1:exon:13745;Parent=Msa0813630-mRNA-1
chr5_3 exon 44656787 44657164 44656787 ID=Msa0813630-mRNA-1:exon:13744;Parent=Msa0813630-mRNA-1
chr5_3 five_prime_UTR 44657022 44657164 44657022 ID=Msa0813630-mRNA-1:five_prime_utr;Parent=Msa0813630-mRNA-1
chr5_3 CDS 44656787 44657021 44656787 ID=Msa0813630-mRNA-1:cds;Parent=Msa0813630-mRNA-1
chr5_3 CDS 44655825 44655925 44655825 ID=Msa0813630-mRNA-1:cds;Parent=Msa0813630-mRNA-1
chr5_3 CDS 44655297 44655410 44655297 ID=Msa0813630-mRNA-1:cds;Parent=Msa0813630-mRNA-1
chr5_3 CDS 44654551 44654763 44654551 ID=Msa0813630-mRNA-1:cds;Parent=Msa0813630-mRNA-1
chr5_3 CDS 44654153 44654293 44654153 ID=Msa0813630-mRNA-1:cds;Parent=Msa0813630-mRNA-1
chr5_3 CDS 44653622 44653846 44653622 ID=Msa0813630-mRNA-1:cds;Parent=Msa0813630-mRNA-1
chr5_3 CDS 44653118 44653206 44653118 ID=Msa0813630-mRNA-1:cds;Parent=Msa0813630-mRNA-1
chr5_3 CDS 44652830 44652899 44652830 ID=Msa0813630-mRNA-1:cds;Parent=Msa0813630-mRNA-1
chr5_3 CDS 44652652 44652738 44652652 ID=Msa0813630-mRNA-1:cds;Parent=Msa0813630-mRNA-1
chr5_3 three_prime_UTR 44652629 44652651 44652629 ID=Msa0813630-mRNA-1:three_prime_utr;Parent=Msa0813630-mRNA-1
chr5_3 three_prime_UTR 44650770 44651243 44650770 ID=Msa0813630-mRNA-1:three_prime_utr;Parent=Msa0813630-mRNA-1
Gene Sequence

>Msa0813630

ATGGCATCTCTATGTATGAACTCAACAGTACCACTCTCACCATCTTCTCACCCTCATCCTCGTAACAACACCTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGCTTGTTGATAACAACATCAACAATAATCACAATAGCCTTAAAACATCATCAAGTACTTTGAAACCTATTGTTGTTATTGGTGACCCTCCAACTTTTGTTTCTGCTCCTGGTCGCACTATTCTCGCTGTTGGAGATTTACATGGAGATCTTAAGCAAGCTAGATATGCACTTGAAATGGCTGGTGTGTTGAGCTCTGATGGTCAAGACTTGTGGACTGGTGGCGAAAATGTGTTGATTCAACTTGGAGATATATTAGATCGAGGTGAAGATGAAATTGCTATCCTGTCCTTGCTGCGATCATTGGATAAACAAGCGAAATCGAAAGGTGGAGCTGTGTTTCAGGTAAATGGAAACCATGAGACCATGAATGTGGAAGGGGATTTCAGATATGTTGATTCTGGAGGATTTGATGAATGTAGTGATTTCTTGGAATATATCAATAATTCTGAAGATGACTGGGAAGAAACATTTACCGGTTGGGTTGATGTATCTGAGAAGTGGAAAGAAGATCGAACAAAGTCAAGAAGTCATTGGGGACCTTGGAATTTAGTGAAGGACAGAGACAAAAGGGAGTCATTGCCCGATCAATCCTCTTTCGGCCTGGTGGGCCACTGGCGTGTGAGCTTGCAAGGCATGGTGTTGCACTCAAGGTTAATGACTGGGTCTTCTGTCATGGCGGCCTTCTTCCTCACCACGAAGCCTGGTAATATTATCTTCATCCTTTTTGTCTCTTCATTTTCTGTAGTTGCGTATGGTTTAGAGCGGATGAACAAAGAAGTGTCTGAGTGGATGAGAGATCCAAGTGAGAATGACAGTACTATCCAAATTCCTTTCATTGCCACTAGGGGTTATGACAGTGTTGTTTGGAATCGGTTATACTCAAGAGACTCACCCGATTTGATGGATTATGAGGCTAAACAGGTATGTTCCGTTCTTGAAGAAACGCTGCAAGCAGTTGATGCTAAGGCAATGGTGGTGGGACATACTCCTCAAACTGTTGGGGTAAATTGTAAATACAATTGTAGCATATGGCGCGTAGATGTTGGAATGTCCAGTGGAGTCCTTAATTCAAGACCAGAGGTTCTAGAAATTATAGACGATAAAGCTAGAGTTATAAGGACCAAAACGGACAGATACAGTGAACTTCAGGCGGCTGCATATACATAA

Protein sequence

>Msa0813630

MASLCMNSTVPLSPSSHPHPRNNTSLSSSSSSSSSLLVDNNINNNHNSLKTSSSTLKPIVVIGDPPTFVSAPGRTILAVGDLHGDLKQARYALEMAGVLSSDGQDLWTGGENVLIQLGDILDRGEDEIAILSLLRSLDKQAKSKGGAVFQVNGNHETMNVEGDFRYVDSGGFDECSDFLEYINNSEDDWEETFTGWVDVSEKWKEDRTKSRSHWGPWNLVKDRDKRESLPDQSSFGLVGHWRVSLQGMVLHSRLMTGSSVMAAFFLTTKPGNIIFILFVSSFSVVAYGLERMNKEVSEWMRDPSENDSTIQIPFIATRGYDSVVWNRLYSRDSPDLMDYEAKQVCSVLEETLQAVDAKAMVVGHTPQTVGVNCKYNCSIWRVDVGMSSGVLNSRPEVLEIIDDKARVIRTKTDRYSELQAAAYT*