AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1226880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1226880 MtrunA17_Chr8g0335211 96.970 198 6 0 53 250 12 209 1.64e-144 403
Msa1226880 MtrunA17_Chr4g0033841 40.449 89 53 0 136 224 108 196 6.11e-14 68.9
Msa1226880 MtrunA17_Chr7g0214751 30.201 149 71 5 128 244 90 237 2.15e-12 65.1
Msa1226880 MtrunA17_Chr4g0052911 33.600 125 71 2 131 243 114 238 1.63e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1226880 AT3G60370.1 65.939 229 64 3 25 250 13 230 1.08e-100 293
Msa1226880 AT3G60370.2 65.939 229 64 3 25 250 42 259 3.39e-100 293
Msa1226880 AT2G43560.1 39.640 111 66 1 114 224 81 190 7.16e-16 74.7
Msa1226880 AT2G43560.2 43.820 89 50 0 136 224 46 134 8.72e-16 73.2
Msa1226880 AT4G19830.1 29.932 147 70 4 136 249 83 229 2.73e-13 67.8
Msa1226880 AT5G13410.1 31.788 151 70 5 126 244 104 253 5.18e-12 64.3

Find 51 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTTCTCTAATAAAATT+TGG 0.135782 8_2:+1878863 None:intergenic
AACTATATAACGCGTGATTC+GGG 0.213117 8_2:-1878663 Msa1226880:CDS
ATGGTCTTCTTTCACAGTTT+TGG 0.228450 8_2:+1877310 None:intergenic
GAAACTTGCGCTTTCTGTTT+TGG 0.240114 8_2:-1879014 Msa1226880:CDS
TATTGACAGCACTTATTTAC+AGG 0.273970 8_2:-1878113 Msa1226880:CDS
TACTTTCTCAGGATGTAATA+TGG 0.285948 8_2:+1879045 None:intergenic
CTTGTTACCCATGCGAATTT+TGG 0.288794 8_2:+1878081 None:intergenic
TACCTTCTCTAATAAAATTT+GGG 0.314007 8_2:+1878864 None:intergenic
ATAATTATTCCTCCTGATCT+TGG 0.323150 8_2:-1877893 Msa1226880:CDS
TAACTATATAACGCGTGATT+CGG 0.332001 8_2:-1878664 Msa1226880:CDS
TTCCTCCTTAATACTTTCTC+AGG 0.354488 8_2:+1879034 None:intergenic
CTTCAGCACAAATATTAGTT+AGG 0.355241 8_2:-1877240 Msa1226880:three_prime_UTR
TACATCCTGAGAAAGTATTA+AGG 0.373534 8_2:-1879039 Msa1226880:CDS
CACTCTTACATGGAATCCTT+TGG 0.373861 8_2:+1879159 None:intergenic
ATAAAATTTGGGAAGTCATC+TGG 0.374287 8_2:+1878875 None:intergenic
GGTAACAAGGCATTGGTTCC+AGG 0.384493 8_2:-1878067 Msa1226880:intron
TCACGCGTTATATAGTTATC+TGG 0.398419 8_2:+1878669 None:intergenic
CACTTATTTACAGGGTTCTC+CGG 0.422942 8_2:-1878104 Msa1226880:CDS
AAAACCTGCTGACCATCCTT+TGG 0.437003 8_2:+1878600 None:intergenic
CAGGTCACATTTCACTATGT+TGG 0.449348 8_2:-1878157 Msa1226880:CDS
TGTATTTATGGATAGAGTGC+AGG 0.475495 8_2:-1879074 Msa1226880:intron
TAAATTATGATGTTGCTTCG+AGG 0.479880 8_2:-1877214 Msa1226880:three_prime_UTR
TATGTTGGCTATAATGAATC+CGG 0.489665 8_2:-1878142 Msa1226880:CDS
TCCTCCTGATCTTGGACCCC+CGG 0.496637 8_2:-1877885 Msa1226880:intron
AACATCAGAGTAAAATCCTA+TGG 0.517482 8_2:+1877291 None:intergenic
CAAAATTCGCATGGGTAACA+AGG 0.517528 8_2:-1878080 Msa1226880:CDS
AGTGCTGTCAATACGCCGGC+CGG 0.518095 8_2:+1878123 None:intergenic
TTGTCCAAAGGATGGTCAGC+AGG 0.523009 8_2:-1878604 Msa1226880:intron
TCGCATGGGTAACAAGGCAT+TGG 0.532556 8_2:-1878074 Msa1226880:CDS
AAATTCCTTTGTACAGTACA+AGG 0.543326 8_2:-1879225 Msa1226880:CDS
CTGTACCAACTTCAAAATCT+CGG 0.552576 8_2:+1878631 None:intergenic
TTCTCCGGCCAAAATTCGCA+TGG 0.552997 8_2:-1878089 Msa1226880:CDS
GGAATTAGAGACATGAGAGC+AGG 0.554241 8_2:-1877929 Msa1226880:CDS
TCTGATGTAGGATTTGAGGA+AGG 0.571358 8_2:-1877950 Msa1226880:intron
ATTAGAGACATGAGAGCAGG+TGG 0.575545 8_2:-1877926 Msa1226880:CDS
AAACTGTGAAAGAAGACCAT+AGG 0.582967 8_2:-1877307 Msa1226880:exon
ATTGACAGCACTTATTTACA+GGG 0.593497 8_2:-1878112 Msa1226880:CDS
CTGTTGTCAATAATCGAGAA+AGG 0.598520 8_2:-1877191 Msa1226880:three_prime_UTR
GGACAAGGACAATCAACTCA+TGG 0.598798 8_2:-1879198 Msa1226880:CDS
ACTATATAACGCGTGATTCG+GGG 0.601130 8_2:-1878662 Msa1226880:CDS
CTTGTCCTTGTACTGTACAA+AGG 0.610580 8_2:+1879220 None:intergenic
CTTTGTACAGTACAAGGACA+AGG 0.612700 8_2:-1879219 Msa1226880:CDS
ACAGGTGATTGTCCAAAGGA+TGG 0.620639 8_2:-1878612 Msa1226880:CDS
GAAGATGGTGAAGATAAGAG+CGG 0.626564 8_2:+1880564 None:intergenic
TCTCCGGCCAAAATTCGCAT+GGG 0.643150 8_2:-1878088 Msa1226880:CDS
ATCCTGAGAAAGTATTAAGG+AGG 0.647507 8_2:-1879036 Msa1226880:CDS
TGGTACAGGTGATTGTCCAA+AGG 0.660317 8_2:-1878616 Msa1226880:CDS
AATAAGTGCTGTCAATACGC+CGG 0.677404 8_2:+1878119 None:intergenic
TTGGCTATAATGAATCCGGC+CGG 0.687904 8_2:-1878138 Msa1226880:CDS
ACAGTACAAGGACAAGGACA+AGG 0.711874 8_2:-1879213 Msa1226880:CDS
CAAGGACAATCAACTCATGG+AGG 0.721666 8_2:-1879195 Msa1226880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTAATATTTTAGTTGA+TGG - chr8_2:1877396-1877415 Msa1226880:intron 15.0%
!!! AAGTTAATATTTTAGTTGAT+GGG - chr8_2:1877397-1877416 Msa1226880:intron 15.0%
!! TCAAAAAACAAAATAATAAC+TGG - chr8_2:1878302-1878321 Msa1226880:intron 15.0%
!!! TAATTTTCATCTTAATTGTT+TGG - chr8_2:1879207-1879226 Msa1226880:CDS 15.0%
!!! AATTTTCATCTTAATTGTTT+GGG - chr8_2:1879208-1879227 Msa1226880:CDS 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr8_2:1880004-1880023 None:intergenic 15.0%
!!! TCACATAATTTTTTACATTA+CGG - chr8_2:1880276-1880295 Msa1226880:intron 15.0%
!! TTGAAACACATATATATGTA+TGG + chr8_2:1877312-1877331 None:intergenic 20.0%
!!! TATTTTTTTCTTTCTTTCTG+AGG - chr8_2:1877355-1877374 Msa1226880:CDS 20.0%
!! TTGAAAAGTTACAACAAATT+AGG - chr8_2:1877569-1877588 Msa1226880:intron 20.0%
!! TGAAAAGTTACAACAAATTA+GGG - chr8_2:1877570-1877589 Msa1226880:intron 20.0%
!! TATAAGCAATTCTTAAGTTT+AGG - chr8_2:1877868-1877887 Msa1226880:intron 20.0%
!! AAACAATTCTATTTGTTTGT+TGG - chr8_2:1877912-1877931 Msa1226880:CDS 20.0%
!! AACAATTCTATTTGTTTGTT+GGG - chr8_2:1877913-1877932 Msa1226880:CDS 20.0%
!! AATTTATTGAAGAGATTAGA+AGG + chr8_2:1878275-1878294 None:intergenic 20.0%
!!! ATTACAGAGTACAAAATTTT+GGG + chr8_2:1878353-1878372 None:intergenic 20.0%
!! TAACTATCATACAATGAATT+AGG + chr8_2:1878376-1878395 None:intergenic 20.0%
!! TTTCATTTAATATCCTTCTA+AGG - chr8_2:1878636-1878655 Msa1226880:CDS 20.0%
!! TTCATTTAATATCCTTCTAA+GGG - chr8_2:1878637-1878656 Msa1226880:CDS 20.0%
!!! GCATTTTTTGTTTGTATTTA+TGG - chr8_2:1878660-1878679 Msa1226880:CDS 20.0%
!!! ATTATACGGATTCATATTTT+TGG + chr8_2:1878800-1878819 None:intergenic 20.0%
!! TACCTTCTCTAATAAAATTT+GGG + chr8_2:1878885-1878904 None:intergenic 20.0%
!! TTACCTTCTCTAATAAAATT+TGG + chr8_2:1878886-1878905 None:intergenic 20.0%
!! AATCATGTATGAAAAAACAA+TGG + chr8_2:1878912-1878931 None:intergenic 20.0%
!! TAAAGAAAGAAATAGTTGAT+TGG + chr8_2:1879187-1879206 None:intergenic 20.0%
!! AAGAAGTTAACACAAATATT+AGG - chr8_2:1879233-1879252 Msa1226880:intron 20.0%
!! TTAGCAATAATTATCAAACA+TGG + chr8_2:1879939-1879958 None:intergenic 20.0%
! ATATATGTATGGTATGAAAG+TGG + chr8_2:1877301-1877320 None:intergenic 25.0%
!! AATTTTCAGTTAAGATTGCA+GGG + chr8_2:1877796-1877815 None:intergenic 25.0%
!! TAATTTTCAGTTAAGATTGC+AGG + chr8_2:1877797-1877816 None:intergenic 25.0%
! ATAAACTATCTATCCAAACA+GGG + chr8_2:1878037-1878056 None:intergenic 25.0%
! AATAAACTATCTATCCAAAC+AGG + chr8_2:1878038-1878057 None:intergenic 25.0%
! GTAATAAACACTTTCAACAT+TGG + chr8_2:1878215-1878234 None:intergenic 25.0%
!!! TACAAAATTTTGGGTTTGTT+TGG + chr8_2:1878344-1878363 None:intergenic 25.0%
!! GATTACAGAGTACAAAATTT+TGG + chr8_2:1878354-1878373 None:intergenic 25.0%
!!! TGATAAAGCATTTCCTTTTT+TGG - chr8_2:1878493-1878512 Msa1226880:intron 25.0%
! AAAATAATGTCACTCTTACA+TGG + chr8_2:1878600-1878619 None:intergenic 25.0%
!! AGTGACATTATTTTCTTGAA+TGG - chr8_2:1878606-1878625 Msa1226880:CDS 25.0%
! TCATTTAATATCCTTCTAAG+GGG - chr8_2:1878638-1878657 Msa1226880:CDS 25.0%
!! AAGACACGTTTTTCATTATA+CGG + chr8_2:1878814-1878833 None:intergenic 25.0%
!! TTCCCAAATTTTATTAGAGA+AGG - chr8_2:1878880-1878899 Msa1226880:CDS 25.0%
! AATACTACTACTTGTATGTT+TGG + chr8_2:1879425-1879444 None:intergenic 25.0%
!!! TAAATCTATCCTTTTTTACC+TGG + chr8_2:1879700-1879719 None:intergenic 25.0%
! AAAACATTGCCTATACATAA+GGG + chr8_2:1880174-1880193 None:intergenic 25.0%
! TAAAACATTGCCTATACATA+AGG + chr8_2:1880175-1880194 None:intergenic 25.0%
!! ACATGCATAGTTTAAAATTG+TGG + chr8_2:1880321-1880340 None:intergenic 25.0%
!! AATTTTAAACTATGCATGTG+TGG - chr8_2:1880322-1880341 Msa1226880:intron 25.0%
!!! AATCTTGTTTTGTATTTTGC+AGG - chr8_2:1880349-1880368 Msa1226880:intron 25.0%
! ATTCTGATAGTTGATATGCA+AGG - chr8_2:1877488-1877507 Msa1226880:intron 30.0%
! ATTGTTGCTGTTAAGGTTAA+TGG - chr8_2:1877545-1877564 Msa1226880:intron 30.0%
ACAACAAATTAGGGTATGTT+TGG - chr8_2:1877579-1877598 Msa1226880:intron 30.0%
TTGACTAAAAAAGACCTGTT+CGG - chr8_2:1877644-1877663 Msa1226880:intron 30.0%
AAATAATCAATAAGCTCGTG+AGG + chr8_2:1877684-1877703 None:intergenic 30.0%
! ATTTTCAGTTAAGATTGCAG+GGG + chr8_2:1877795-1877814 None:intergenic 30.0%
! TTCTATTTGTTTGTTGGGAT+AGG - chr8_2:1877918-1877937 Msa1226880:CDS 30.0%
ATAGGACTAAGATAGTTTAG+AGG - chr8_2:1877936-1877955 Msa1226880:CDS 30.0%
TTCCATTGCACTATAGTTTA+GGG - chr8_2:1877973-1877992 Msa1226880:intron 30.0%
GACCTATAGTGTTTAAACAA+CGG - chr8_2:1878011-1878030 Msa1226880:intron 30.0%
TTGTGGAAATAAGCTGAAAA+TGG - chr8_2:1878148-1878167 Msa1226880:CDS 30.0%
! AAACACTTTCAACATTGGTT+GGG + chr8_2:1878210-1878229 None:intergenic 30.0%
TAAACACTTTCAACATTGGT+TGG + chr8_2:1878211-1878230 None:intergenic 30.0%
TGCATGTTTATCTAACTACT+TGG - chr8_2:1878465-1878484 Msa1226880:intron 30.0%
! AGGAATTTTACTGCCAAAAA+AGG + chr8_2:1878509-1878528 None:intergenic 30.0%
AAATTCCTTTGTACAGTACA+AGG - chr8_2:1878521-1878540 Msa1226880:intron 30.0%
AGGCACTAATAAAAAACCAA+AGG - chr8_2:1878571-1878590 Msa1226880:intron 30.0%
TACTTTCTCAGGATGTAATA+TGG + chr8_2:1878704-1878723 None:intergenic 30.0%
!! TACATCCTGAGAAAGTATTA+AGG - chr8_2:1878707-1878726 Msa1226880:intron 30.0%
ATAAAATTTGGGAAGTCATC+TGG + chr8_2:1878874-1878893 None:intergenic 30.0%
AAAACAACTGTAACACTTAC+AGG + chr8_2:1878985-1879004 None:intergenic 30.0%
!! GTTGTTTTGTGTCAAACTTT+TGG - chr8_2:1878997-1879016 Msa1226880:CDS 30.0%
! AACTTTTGGATATGATGTTC+TGG - chr8_2:1879011-1879030 Msa1226880:CDS 30.0%
!!! GGTTTGTTAATATGCTTTTC+AGG - chr8_2:1879032-1879051 Msa1226880:CDS 30.0%
TAACTATATAACGCGTGATT+CGG - chr8_2:1879082-1879101 Msa1226880:intron 30.0%
!!! ATTTACCGAGATTTTGAAGT+TGG - chr8_2:1879110-1879129 Msa1226880:intron 30.0%
! ATTTTGCAGTGAAAACAAAC+AGG + chr8_2:1879302-1879321 None:intergenic 30.0%
!! CTTGATGAGTTTGTTGAAAT+GGG - chr8_2:1879467-1879486 Msa1226880:intron 30.0%
!! TTGATGAGTTTGTTGAAATG+GGG - chr8_2:1879468-1879487 Msa1226880:intron 30.0%
TTTGTTGAAATGGGGAAAAT+TGG - chr8_2:1879476-1879495 Msa1226880:intron 30.0%
ATTGGAAATTGATGTTTGAG+CGG - chr8_2:1879494-1879513 Msa1226880:intron 30.0%
! TATGTTGGCTATAATGAATC+CGG - chr8_2:1879604-1879623 Msa1226880:intron 30.0%
TATTGACAGCACTTATTTAC+AGG - chr8_2:1879633-1879652 Msa1226880:intron 30.0%
ATTGACAGCACTTATTTACA+GGG - chr8_2:1879634-1879653 Msa1226880:intron 30.0%
AAATCCTACATCAGAAAATG+TGG + chr8_2:1879791-1879810 None:intergenic 30.0%
! ATTTTCTGATGTAGGATTTG+AGG - chr8_2:1879792-1879811 Msa1226880:intron 30.0%
ATAATTATTCCTCCTGATCT+TGG - chr8_2:1879853-1879872 Msa1226880:intron 30.0%
AAAGAGAATAAGAGATGTAC+CGG + chr8_2:1879883-1879902 None:intergenic 30.0%
AACTTATTCCGAACATATGT+CGG - chr8_2:1880033-1880052 Msa1226880:intron 30.0%
! ATGTCTTTGATTAGAAGTGT+CGG - chr8_2:1880088-1880107 Msa1226880:intron 30.0%
GTTGCTAAAAACTTATGCTA+AGG - chr8_2:1880120-1880139 Msa1226880:intron 30.0%
GTTTATCTTCCCTTATGTAT+AGG - chr8_2:1880162-1880181 Msa1226880:intron 30.0%
!! TTGTTTTGTATTTTGCAGGT+AGG - chr8_2:1880353-1880372 Msa1226880:intron 30.0%
TTTGAGCTGAAAAATGTTGA+AGG + chr8_2:1880380-1880399 None:intergenic 30.0%
AACATCAGAGTAAAATCCTA+TGG + chr8_2:1880458-1880477 None:intergenic 30.0%
CTTCAGCACAAATATTAGTT+AGG - chr8_2:1880506-1880525 Msa1226880:intron 30.0%
! TAAATTATGATGTTGCTTCG+AGG - chr8_2:1880532-1880551 Msa1226880:CDS 30.0%
GAAGAAGAAGAAGAAGAAGA+TGG + chr8_2:1877200-1877219 None:intergenic 35.0%
CGAAGTTGAATTTATGTTGC+TGG - chr8_2:1877449-1877468 Msa1226880:intron 35.0%
! AACTCTCATTGTTGCTGTTA+AGG - chr8_2:1877538-1877557 Msa1226880:intron 35.0%
! TAAGATAGTTTAGAGGTGCA+GGG - chr8_2:1877943-1877962 Msa1226880:CDS 35.0%
GTTCCATTGCACTATAGTTT+AGG - chr8_2:1877972-1877991 Msa1226880:intron 35.0%
TCCATTGCACTATAGTTTAG+GGG - chr8_2:1877974-1877993 Msa1226880:intron 35.0%
!! GTTGTTTTCAGAAGCTATCA+TGG - chr8_2:1878120-1878139 Msa1226880:CDS 35.0%
!! AGATTAGAAGGCGTTATGTT+TGG + chr8_2:1878263-1878282 None:intergenic 35.0%
AACAAAAAATGCCCCTTAGA+AGG + chr8_2:1878652-1878671 None:intergenic 35.0%
TGTATTTATGGATAGAGTGC+AGG - chr8_2:1878672-1878691 Msa1226880:CDS 35.0%
!! ATCCTGAGAAAGTATTAAGG+AGG - chr8_2:1878710-1878729 Msa1226880:intron 35.0%
TTCCTCCTTAATACTTTCTC+AGG + chr8_2:1878715-1878734 None:intergenic 35.0%
TCACGCGTTATATAGTTATC+TGG + chr8_2:1879080-1879099 None:intergenic 35.0%
AACTATATAACGCGTGATTC+GGG - chr8_2:1879083-1879102 Msa1226880:intron 35.0%
CTGTACCAACTTCAAAATCT+CGG + chr8_2:1879118-1879137 None:intergenic 35.0%
AATTCTTCTAGACGTACGTT+TGG - chr8_2:1879319-1879338 Msa1226880:intron 35.0%
GAAATAAGGAAGCTACCAAT+TGG + chr8_2:1879354-1879373 None:intergenic 35.0%
! CAAGTAGTAGTATTTTGCAG+TGG - chr8_2:1879431-1879450 Msa1226880:intron 35.0%
CCATTTCAACAAACTCATCA+AGG + chr8_2:1879469-1879488 None:intergenic 35.0%
!! CCTTGATGAGTTTGTTGAAA+TGG - chr8_2:1879466-1879485 Msa1226880:intron 35.0%
TGACAAAAAGCTTTCGTCAT+TGG - chr8_2:1879748-1879767 Msa1226880:intron 35.0%
! TTCTCCACATTTTCTGATGT+AGG - chr8_2:1879784-1879803 Msa1226880:intron 35.0%
AAGAGAATAAGAGATGTACC+GGG + chr8_2:1879882-1879901 None:intergenic 35.0%
CTTCTAATCAAAGACATGCT+TGG + chr8_2:1880085-1880104 None:intergenic 35.0%
TTACATTACGGCCACAATTA+TGG - chr8_2:1880288-1880307 Msa1226880:intron 35.0%
! ATGGTCTTCTTTCACAGTTT+TGG + chr8_2:1880439-1880458 None:intergenic 35.0%
AAACTGTGAAAGAAGACCAT+AGG - chr8_2:1880439-1880458 Msa1226880:intron 35.0%
CTGTTGTCAATAATCGAGAA+AGG - chr8_2:1880555-1880574 Msa1226880:CDS 35.0%
GAAGATGGTGAAGATAAGAG+CGG + chr8_2:1877185-1877204 None:intergenic 40.0%
! CTAAGATAGTTTAGAGGTGC+AGG - chr8_2:1877942-1877961 Msa1226880:CDS 40.0%
! AAGATAGTTTAGAGGTGCAG+GGG - chr8_2:1877944-1877963 Msa1226880:intron 40.0%
ACCCCTAAACTATAGTGCAA+TGG + chr8_2:1877978-1877997 None:intergenic 40.0%
GGCCGTTGTTTAAACACTAT+AGG + chr8_2:1878016-1878035 None:intergenic 40.0%
AAGCTATCATGGAAAGCTTG+TGG - chr8_2:1878131-1878150 Msa1226880:CDS 40.0%
CTTGTCCTTGTACTGTACAA+AGG + chr8_2:1878529-1878548 None:intergenic 40.0%
CTTTGTACAGTACAAGGACA+AGG - chr8_2:1878527-1878546 Msa1226880:intron 40.0%
CACTCTTACATGGAATCCTT+TGG + chr8_2:1878590-1878609 None:intergenic 40.0%
! GAAACTTGCGCTTTCTGTTT+TGG - chr8_2:1878732-1878751 Msa1226880:intron 40.0%
ACTATATAACGCGTGATTCG+GGG - chr8_2:1879084-1879103 Msa1226880:intron 40.0%
!!! CGAGATTTTGAAGTTGGTAC+AGG - chr8_2:1879116-1879135 Msa1226880:intron 40.0%
GACAATTTCAGTTCTCAGTC+TGG + chr8_2:1879268-1879287 None:intergenic 40.0%
GTTTGGTTAGAAGCTCCAAT+TGG - chr8_2:1879336-1879355 Msa1226880:intron 40.0%
GCAATCTCGACGTTGAAATA+AGG + chr8_2:1879368-1879387 None:intergenic 40.0%
TTTCAACGTCGAGATTGCAT+TGG - chr8_2:1879370-1879389 Msa1226880:intron 40.0%
TTCAACGTCGAGATTGCATT+GGG - chr8_2:1879371-1879390 Msa1226880:intron 40.0%
ATAGTGAAATGTGACCTGCA+AGG + chr8_2:1879587-1879606 None:intergenic 40.0%
CAGGTCACATTTCACTATGT+TGG - chr8_2:1879589-1879608 Msa1226880:intron 40.0%
! AATAAGTGCTGTCAATACGC+CGG + chr8_2:1879630-1879649 None:intergenic 40.0%
CACTTATTTACAGGGTTCTC+CGG - chr8_2:1879642-1879661 Msa1226880:intron 40.0%
! CTTGTTACCCATGCGAATTT+TGG + chr8_2:1879668-1879687 None:intergenic 40.0%
CAAAATTCGCATGGGTAACA+AGG - chr8_2:1879666-1879685 Msa1226880:intron 40.0%
!! GCATTGGTTCCAGGTAAAAA+AGG - chr8_2:1879688-1879707 Msa1226880:intron 40.0%
TCTGATGTAGGATTTGAGGA+AGG - chr8_2:1879796-1879815 Msa1226880:intron 40.0%
AGAGAATAAGAGATGTACCG+GGG + chr8_2:1879881-1879900 None:intergenic 40.0%
GGTGTCAACATGTACATGTT+CGG + chr8_2:1879983-1880002 None:intergenic 40.0%
GAGAGAGAGAGAGAGTTACA+TGG + chr8_2:1877248-1877267 None:intergenic 45.0%
AAGTAAGTGATGGTCCGAAC+AGG + chr8_2:1877661-1877680 None:intergenic 45.0%
! AGATAGTTTAGAGGTGCAGG+GGG - chr8_2:1877945-1877964 Msa1226880:intron 45.0%
GTTTAAACAACGGCCCTGTT+TGG - chr8_2:1878021-1878040 Msa1226880:intron 45.0%
ACAGTACAAGGACAAGGACA+AGG - chr8_2:1878533-1878552 Msa1226880:intron 45.0%
GGACAAGGACAATCAACTCA+TGG - chr8_2:1878548-1878567 Msa1226880:intron 45.0%
CAAGGACAATCAACTCATGG+AGG - chr8_2:1878551-1878570 Msa1226880:intron 45.0%
CTTACAGGAGAGACATCACA+GGG + chr8_2:1878970-1878989 None:intergenic 45.0%
ACTTACAGGAGAGACATCAC+AGG + chr8_2:1878971-1878990 None:intergenic 45.0%
TGGTACAGGTGATTGTCCAA+AGG - chr8_2:1879130-1879149 Msa1226880:intron 45.0%
ACAGGTGATTGTCCAAAGGA+TGG - chr8_2:1879134-1879153 Msa1226880:intron 45.0%
AAAACCTGCTGACCATCCTT+TGG + chr8_2:1879149-1879168 None:intergenic 45.0%
TACAGTATACCATGCCTTGC+AGG - chr8_2:1879570-1879589 Msa1226880:intron 45.0%
TTGGCTATAATGAATCCGGC+CGG - chr8_2:1879608-1879627 Msa1226880:intron 45.0%
!! TTACCCATGCGAATTTTGGC+CGG + chr8_2:1879664-1879683 None:intergenic 45.0%
GGAATTAGAGACATGAGAGC+AGG - chr8_2:1879817-1879836 Msa1226880:intron 45.0%
ATTAGAGACATGAGAGCAGG+TGG - chr8_2:1879820-1879839 Msa1226880:intron 45.0%
GAGAATAAGAGATGTACCGG+GGG + chr8_2:1879880-1879899 None:intergenic 45.0%
TCAAACATGGAAAGACTCGC+AGG + chr8_2:1879926-1879945 None:intergenic 45.0%
GTCTGACACCGACATATGTT+CGG + chr8_2:1880044-1880063 None:intergenic 45.0%
TTGCTTTCGCGATGTAGTTG+TGG - chr8_2:1880250-1880269 Msa1226880:intron 45.0%
GTGGCTCACAACCATAATTG+TGG + chr8_2:1880302-1880321 None:intergenic 45.0%
GCTCGTGAGGAAGTAAGTGA+TGG + chr8_2:1877671-1877690 None:intergenic 50.0%
TTGTCCAAAGGATGGTCAGC+AGG - chr8_2:1879142-1879161 Msa1226880:intron 50.0%
GAAATGTGACCTGCAAGGCA+TGG + chr8_2:1879582-1879601 None:intergenic 50.0%
TTCTCCGGCCAAAATTCGCA+TGG - chr8_2:1879657-1879676 Msa1226880:intron 50.0%
TCTCCGGCCAAAATTCGCAT+GGG - chr8_2:1879658-1879677 Msa1226880:intron 50.0%
TCGCATGGGTAACAAGGCAT+TGG - chr8_2:1879672-1879691 Msa1226880:intron 50.0%
!! GGTAACAAGGCATTGGTTCC+AGG - chr8_2:1879679-1879698 Msa1226880:intron 50.0%
CTCGCAGGTACAGTAGTGAA+TGG + chr8_2:1879911-1879930 None:intergenic 50.0%
AGTGCTGTCAATACGCCGGC+CGG + chr8_2:1879626-1879645 None:intergenic 60.0%
TCCTCCTGATCTTGGACCCC+CGG - chr8_2:1879861-1879880 Msa1226880:intron 60.0%
TGTACCGGGGGTCCAAGATC+AGG + chr8_2:1879868-1879887 None:intergenic 60.0%
ACCGGGGGTCCAAGATCAGG+AGG + chr8_2:1879865-1879884 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 1877137 1880631 1877137 ID=Msa1226880;Name=Msa1226880
chr8_2 mRNA 1877137 1880631 1877137 ID=Msa1226880-mRNA-1;Parent=Msa1226880;Name=Msa1226880-mRNA-1;_AED=0.10;_eAED=0.10;_QI=39|1|1|1|0.83|0.85|7|171|251
chr8_2 exon 1877137 1877397 1877137 ID=Msa1226880-mRNA-1:exon:441;Parent=Msa1226880-mRNA-1
chr8_2 exon 1877886 1877962 1877886 ID=Msa1226880-mRNA-1:exon:440;Parent=Msa1226880-mRNA-1
chr8_2 exon 1878068 1878176 1878068 ID=Msa1226880-mRNA-1:exon:439;Parent=Msa1226880-mRNA-1
chr8_2 exon 1878605 1878714 1878605 ID=Msa1226880-mRNA-1:exon:438;Parent=Msa1226880-mRNA-1
chr8_2 exon 1878867 1879081 1878867 ID=Msa1226880-mRNA-1:exon:437;Parent=Msa1226880-mRNA-1
chr8_2 exon 1879168 1879249 1879168 ID=Msa1226880-mRNA-1:exon:436;Parent=Msa1226880-mRNA-1
chr8_2 exon 1880520 1880631 1880520 ID=Msa1226880-mRNA-1:exon:435;Parent=Msa1226880-mRNA-1
chr8_2 five_prime_UTR 1880593 1880631 1880593 ID=Msa1226880-mRNA-1:five_prime_utr;Parent=Msa1226880-mRNA-1
chr8_2 CDS 1880520 1880592 1880520 ID=Msa1226880-mRNA-1:cds;Parent=Msa1226880-mRNA-1
chr8_2 CDS 1879168 1879249 1879168 ID=Msa1226880-mRNA-1:cds;Parent=Msa1226880-mRNA-1
chr8_2 CDS 1878867 1879081 1878867 ID=Msa1226880-mRNA-1:cds;Parent=Msa1226880-mRNA-1
chr8_2 CDS 1878605 1878714 1878605 ID=Msa1226880-mRNA-1:cds;Parent=Msa1226880-mRNA-1
chr8_2 CDS 1878068 1878176 1878068 ID=Msa1226880-mRNA-1:cds;Parent=Msa1226880-mRNA-1
chr8_2 CDS 1877886 1877962 1877886 ID=Msa1226880-mRNA-1:cds;Parent=Msa1226880-mRNA-1
chr8_2 CDS 1877308 1877397 1877308 ID=Msa1226880-mRNA-1:cds;Parent=Msa1226880-mRNA-1
chr8_2 three_prime_UTR 1877137 1877307 1877137 ID=Msa1226880-mRNA-1:three_prime_utr;Parent=Msa1226880-mRNA-1
Gene Sequence

>Msa1226880

ATGCTACCGCTCTTATCTTCACCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTCATGCAATCTTTTCCATTAAAATTCCTTTGTACAGTACAAGGACAAGGACAAGGACAATCAACTCATGGAGGCACTAATAAAAAACCAAAGGATTCCATAGTGCAGGATAACACCATATTACATCCTGAGAAAGTATTAAGGAGGAAACTTGCGCTTTCTGTTTTGGTCTCAACTTGTGTTTTTTCAACTTTATCTTCTCATGCAAAGACCAAAAATATGAATCCGTATAATGAAAAACGTGTCTTGCAACAAAACAAGAATATACAAAAACAAAACAACGCACCAGATGACTTCCCAAATTTTATTAGAGAAGGTTTTGAAGTCAAAGTAATAGCACCAGATAACTATATAACGCGTGATTCGGGGCTCATTTACCGAGATTTTGAAGTTGGTACAGGTGATTGTCCAAAGGATGGTCAGCAGGTCACATTTCACTATGTTGGCTATAATGAATCCGGCCGGCGTATTGACAGCACTTATTTACAGGGTTCTCCGGCCAAAATTCGCATGGGTAACAAGGCATTGGTTCCAGGATTTGAGGAAGGAATTAGAGACATGAGAGCAGGTGGAAAGAGAAGAATAATTATTCCTCCTGATCTTGGACCCCCGGTAGGACCTTCAACATTTTTCAGCTCAAAACAATTTGAAGTTTTTGATGTTGAATTATTAAGCATCCAAAACTGTGAAAGAAGACCATAG

Protein sequence

>Msa1226880

MLPLLSSPSSSSSSSSSSLMQSFPLKFLCTVQGQGQGQSTHGGTNKKPKDSIVQDNTILHPEKVLRRKLALSVLVSTCVFSTLSSHAKTKNMNPYNEKRVLQQNKNIQKQNNAPDDFPNFIREGFEVKVIAPDNYITRDSGLIYRDFEVGTGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGSPAKIRMGNKALVPGFEEGIRDMRAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELLSIQNCERRP*