AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130660 MtrunA17_Chr7g0276581 90.391 562 35 7 1 548 1 557 0.0 951
Msa1130660 MtrunA17_Chr8g0360611 40.000 155 88 1 80 229 60 214 8.30e-29 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130660 AT1G53800.1 48.283 495 196 11 88 545 95 566 5.24e-135 404
Msa1130660 AT1G53800.2 48.283 495 196 11 88 545 99 570 7.28e-135 404
Msa1130660 AT1G53800.3 48.283 495 196 11 88 545 99 570 7.28e-135 404
Msa1130660 AT1G53800.4 44.419 439 184 11 144 545 1 416 7.04e-100 308
Msa1130660 AT1G53250.1 42.553 141 79 1 87 227 93 231 2.06e-26 111

Find 151 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGATCGGCTTAACAATTT+TGG 0.147374 7_3:+82819363 None:intergenic
TACAAGTTCTCTGAAGATTT+TGG 0.168425 7_3:-82818648 Msa1130660:CDS
AGCTTCAGCTATAAGCTTTC+TGG 0.177934 7_3:+82818833 None:intergenic
CACTCTTGAAGAAACATTTA+TGG 0.179927 7_3:+82818293 None:intergenic
CCTTCTCTGTTCAGGGGACT+TGG 0.194217 7_3:+82820698 None:intergenic
CTCTTTAGCTAAAGCTATTT+TGG 0.200557 7_3:+82818201 None:intergenic
CTATAACTGGGCCTTGTTCT+AGG 0.249045 7_3:+82819457 None:intergenic
CAGAAGCTATTGCTGCAAAA+TGG 0.252169 7_3:-82820668 Msa1130660:CDS
ATGTATCTATATTAGTTTAT+AGG 0.252410 7_3:-82818175 Msa1130660:three_prime_UTR
ATGGGCAGTCTTGGTTTATC+TGG 0.254259 7_3:+82818538 None:intergenic
AAGAAAATCCCCTGCCTATA+AGG 0.268562 7_3:-82819332 Msa1130660:CDS
TCAGAAATGGCCCAAGTAAA+TGG 0.271344 7_3:-82818696 Msa1130660:CDS
GTTTCCCTTTGCTGATTTGA+TGG 0.273722 7_3:+82818519 None:intergenic
GGAGAGTTGTGCACTATAAC+TGG 0.300149 7_3:+82819444 None:intergenic
AAGTGATTGTTGTTGAATTT+AGG 0.317748 7_3:+82821739 None:intergenic
TTTGTACTATGTTTGAAAAC+TGG 0.330107 7_3:+82818343 None:intergenic
CGTTATCCTCTTCTCTGGTT+TGG 0.334404 7_3:-82822189 Msa1130660:five_prime_UTR
AGAATTTCTAAAGCTAATAA+AGG 0.335079 7_3:-82821610 Msa1130660:CDS
TCCCTGGAGAGACCAGTTAA+TGG 0.338872 7_3:-82818618 Msa1130660:CDS
TTGGGTGCTCTGTTGCTAAC+TGG 0.340197 7_3:+82820717 None:intergenic
CTGTTCATCCAAGGTTTCAT+AGG 0.344649 7_3:+82820794 None:intergenic
TGCTTTCTTCCTTTGTTCCA+TGG 0.347511 7_3:+82821580 None:intergenic
CTTGTAATTGAGTGTGGATA+TGG 0.349317 7_3:+82821868 None:intergenic
CCATTGGTTAGGTGAAGTTC+TGG 0.357997 7_3:+82818591 None:intergenic
TTGTATGGCTTGAGTTTGTC+TGG 0.361484 7_3:+82819243 None:intergenic
AAAATGAAGTTGACTAATCT+TGG 0.365767 7_3:-82821096 Msa1130660:CDS
ATTCACCAAAGGATCCTTAT+AGG 0.367988 7_3:+82819318 None:intergenic
GGTCTACCTTGCTTGTTGTA+TGG 0.369499 7_3:+82819228 None:intergenic
GTGTCTTTCTCTTTATTATC+CGG 0.385269 7_3:+82818063 None:intergenic
GCTGATTTGATGGGCAGTCT+TGG 0.385985 7_3:+82818529 None:intergenic
TAGATTGTGTTTCATCTTCA+AGG 0.386322 7_3:+82818451 None:intergenic
CCCTGCCTATAAGGATCCTT+TGG 0.391549 7_3:-82819323 Msa1130660:CDS
CAGAAACTTTGCAGAAGATC+AGG 0.392693 7_3:-82821457 Msa1130660:CDS
TAATTATGATGAAGCATAAT+CGG 0.403362 7_3:+82821694 None:intergenic
CGCCATTAACTGGTCTCTCC+AGG 0.404361 7_3:+82818616 None:intergenic
GTTCTTTATCATCTCTAGCT+TGG 0.409338 7_3:+82819294 None:intergenic
GCATCTAGGCAAGGCTTTGT+TGG 0.411974 7_3:-82820840 Msa1130660:CDS
ATGTTGTGCGTCCATTTACT+TGG 0.417420 7_3:+82818685 None:intergenic
TAGGCAAGGCTTTGTTGGTC+AGG 0.417991 7_3:-82820835 Msa1130660:CDS
CTTCTCTGTTCAGGGGACTT+GGG 0.418289 7_3:+82820699 None:intergenic
CGCAGCAACCTCCAGTGCCT+TGG 0.418723 7_3:+82818893 None:intergenic
TGGCTGGTCAGCTAATGATT+TGG 0.428162 7_3:+82818249 None:intergenic
AGTTCTGGAACGCCATTAAC+TGG 0.430767 7_3:+82818606 None:intergenic
ATTTAATTGCAGAAGCATCT+AGG 0.431183 7_3:-82820854 Msa1130660:CDS
TGAGAAAGCGGCCAAGGCAC+TGG 0.455747 7_3:-82818904 Msa1130660:CDS
TTTCCCTTTGCTGATTTGAT+GGG 0.456711 7_3:+82818520 None:intergenic
TAGTTTGAGCGAGGTCAATC+AGG 0.457771 7_3:-82818751 Msa1130660:CDS
TCCATGTCTACCTAGACAAT+TGG 0.461480 7_3:+82818226 None:intergenic
TTCAGTAGAATGATGATACT+TGG 0.462498 7_3:+82819486 None:intergenic
AGTTCGAAACCATTCAGAAA+TGG 0.466397 7_3:-82818709 Msa1130660:CDS
AGCAACGTTATCCTCTTCTC+TGG 0.467008 7_3:-82822194 Msa1130660:five_prime_UTR
TTACTTGGGCCATTTCTGAA+TGG 0.473231 7_3:+82818700 None:intergenic
TCAGCAAAGGGAAACAGAAC+AGG 0.475127 7_3:-82818511 Msa1130660:CDS
TGCCGCTACTGCTGCTACGA+TGG 0.479000 7_3:-82821773 Msa1130660:CDS
ACCAAAGGATCCTTATAGGC+AGG 0.479827 7_3:+82819322 None:intergenic
ACGAAGGAAGGAAGGAAGGA+AGG 0.480345 7_3:-82822218 Msa1130660:five_prime_UTR
AAGAAGCACATCCATTGGTT+AGG 0.484112 7_3:+82818580 None:intergenic
AGAAGCTATTGCTGCAAAAT+GGG 0.486163 7_3:-82820667 Msa1130660:CDS
GAGTGTGGATATGGTGGTAA+TGG 0.488360 7_3:+82821877 None:intergenic
TCAGAGAACTTGTAGAAGCT+TGG 0.494752 7_3:+82818657 None:intergenic
ATTAGAGAAGACTGAGCAAT+GGG 0.497339 7_3:+82818861 None:intergenic
TGTTTGTTTGTAACGAAGGA+AGG 0.498980 7_3:-82822230 Msa1130660:five_prime_UTR
TTGCAGAGCAGACTCTTTCA+CGG 0.513414 7_3:+82819512 None:intergenic
CGTAGCAGCAGTAGCGGCAA+CGG 0.513506 7_3:+82821777 None:intergenic
TAATGGTGGGTGGGATTCGA+TGG 0.514499 7_3:+82822163 None:intergenic
CTTCTTCTTGTAATTGAGTG+TGG 0.514520 7_3:+82821862 None:intergenic
TACGAACCAATCAAAGGCAT+GGG 0.516309 7_3:+82822017 None:intergenic
TTGGTCAGGAAGAGCTGCAA+TGG 0.516970 7_3:-82820821 Msa1130660:CDS
AGATTGTGTTTCATCTTCAA+GGG 0.528242 7_3:+82818452 None:intergenic
AGATGACTGTAGTGTCCCTT+CGG 0.529223 7_3:-82818775 Msa1130660:CDS
CTGCTTAAGCTGTTCATCCA+AGG 0.529761 7_3:+82820785 None:intergenic
TGTAACGAAGGAAGGAAGGA+AGG 0.529864 7_3:-82822222 Msa1130660:five_prime_UTR
AAAGGAAGAAAGCACAGTCC+TGG 0.530236 7_3:-82821571 Msa1130660:intron
AACTTCTCGCTCTCATCAAG+TGG 0.532485 7_3:+82821643 None:intergenic
TGTTGAAGAAAGGAAACAAA+TGG 0.535795 7_3:-82820748 Msa1130660:CDS
ATCTGGCTATTCAAACTGAA+AGG 0.537699 7_3:+82818555 None:intergenic
CTGCCCATCAAATCAGCAAA+GGG 0.542744 7_3:-82818523 Msa1130660:CDS
AGCGAACGAGCGAGAGTGAG+AGG 0.542754 7_3:+82822061 None:intergenic
TAGTTGTTTGTTTGTAACGA+AGG 0.545523 7_3:-82822234 Msa1130660:five_prime_UTR
AATGAGGCGTGGAAGGAAGA+TGG 0.548441 7_3:-82820907 Msa1130660:CDS
ATGTCTACCTAGACAATTGG+TGG 0.553934 7_3:+82818229 None:intergenic
ATGGAATTCCTATGAAACCT+TGG 0.554470 7_3:-82820802 Msa1130660:CDS
AGTATCATCATTCTACTGAA+AGG 0.554917 7_3:-82819483 Msa1130660:CDS
TGTTGTGCGTCCATTTACTT+GGG 0.559138 7_3:+82818686 None:intergenic
CTACCTAGACAATTGGTGGC+TGG 0.559723 7_3:+82818233 None:intergenic
TATGGGAAATGAGGCGTGGA+AGG 0.561411 7_3:-82820914 Msa1130660:CDS
ATTCAACAACAATCACTTGG+AGG 0.563513 7_3:-82821734 Msa1130660:CDS
GCAACGGCTTTAATGAGGAA+TGG 0.563520 7_3:+82821793 None:intergenic
TGAAGCTGAGAAAGCGGCCA+AGG 0.564202 7_3:-82818910 Msa1130660:CDS
TGAGAAAGCTATGGGAAATG+AGG 0.567042 7_3:-82820923 Msa1130660:CDS
GCGTGGAAGGAAGATGGTGC+AGG 0.567129 7_3:-82820901 Msa1130660:CDS
CTTGGATGAACAGCTTAAGC+AGG 0.568138 7_3:-82820784 Msa1130660:CDS
CTACTACTAGGAGGTGGAGG+AGG 0.571104 7_3:-82821819 Msa1130660:CDS
CTAATAAAGGAAACACTCCA+TGG 0.572287 7_3:-82821597 Msa1130660:CDS
CCTCGCTATGCAGAATCCTA+AGG 0.572868 7_3:-82821423 Msa1130660:intron
TGTTTGTAACGAAGGAAGGA+AGG 0.574556 7_3:-82822226 Msa1130660:five_prime_UTR
CAAGGCACTGGAGGTTGCTG+CGG 0.574810 7_3:-82818892 Msa1130660:CDS
TGCTGGAGTGAGAAAGCTAT+GGG 0.576084 7_3:-82820931 Msa1130660:CDS
GGTTGCTCAGTGTTGAAGAA+AGG 0.576460 7_3:-82820758 Msa1130660:CDS
CCAAGTCCCCTGAACAGAGA+AGG 0.577586 7_3:-82820698 Msa1130660:CDS
CCAAAGGATCCTTATAGGCA+GGG 0.578428 7_3:+82819323 None:intergenic
TGACCAGCCACCAATTGTCT+AGG 0.578871 7_3:-82818236 Msa1130660:three_prime_UTR
TGATGAAGCATAATCGGATG+AGG 0.579917 7_3:+82821700 None:intergenic
CTACTACTACTAGGAGGTGG+AGG 0.580642 7_3:-82821822 Msa1130660:CDS
TAAAAGTACGAACCAATCAA+AGG 0.580810 7_3:+82822011 None:intergenic
CAAAGGATCCTTATAGGCAG+GGG 0.581887 7_3:+82819324 None:intergenic
GTGCTGGAGTGAGAAAGCTA+TGG 0.583096 7_3:-82820932 Msa1130660:CDS
TGACGCAGATGAATGAATGA+AGG 0.583606 7_3:+82822133 None:intergenic
AGAAACTTTGCAGAAGATCA+GGG 0.584197 7_3:-82821456 Msa1130660:CDS
ATTGAAGACACTCGCCCACC+CGG 0.584356 7_3:+82818041 None:intergenic
AGGAGAGTTGCTGCTTTGAG+TGG 0.585215 7_3:-82820881 Msa1130660:CDS
GTACGAACCAATCAAAGGCA+TGG 0.587630 7_3:+82822016 None:intergenic
GATAATAAAGAGAAAGACAC+CGG 0.589588 7_3:-82818060 Msa1130660:three_prime_UTR
AGGTAAAGAAGCACATCCAT+TGG 0.589919 7_3:+82818575 None:intergenic
AACCATCGTAGCAGCAGTAG+CGG 0.590920 7_3:+82821771 None:intergenic
TTACTACTACTACTAGGAGG+TGG 0.592223 7_3:-82821825 Msa1130660:CDS
ACCAATTGTCTAGGTAGACA+TGG 0.592789 7_3:-82818227 Msa1130660:three_prime_UTR
TAAATTCAACAACAATCACT+TGG 0.594861 7_3:-82821737 Msa1130660:CDS
TAGCGGCAACGGCTTTAATG+AGG 0.595071 7_3:+82821788 None:intergenic
GCCATTAACTGGTCTCTCCA+GGG 0.596953 7_3:+82818617 None:intergenic
ATTGCAGAAGCATCTAGGCA+AGG 0.597944 7_3:-82820849 Msa1130660:CDS
ACCTCGCTCAAACTAACCGA+AGG 0.599556 7_3:+82818759 None:intergenic
GAGAGTTGTGCACTATAACT+GGG 0.604300 7_3:+82819445 None:intergenic
CCCTTCGGTTAGTTTGAGCG+AGG 0.606707 7_3:-82818760 Msa1130660:CDS
TATTAGAGAAGACTGAGCAA+TGG 0.606763 7_3:+82818860 None:intergenic
AACAAATGCACATTTACTGA+GGG 0.607574 7_3:-82821902 Msa1130660:CDS
GGAAACACTCCATGGAACAA+AGG 0.613565 7_3:-82821589 Msa1130660:CDS
ACTGCCCATCAAATCAGCAA+AGG 0.614011 7_3:-82818524 Msa1130660:CDS
TGATTGTTGTTGAATTTAGG+TGG 0.614725 7_3:+82821742 None:intergenic
TGGAAACCAAACCAGAGAAG+AGG 0.617338 7_3:+82822183 None:intergenic
ATGAACAGCTTAAGCAGGAG+TGG 0.618338 7_3:-82820779 Msa1130660:CDS
GATTGCTGAAGCTGAGAAAG+CGG 0.618657 7_3:-82818916 Msa1130660:CDS
TAACAAATGCACATTTACTG+AGG 0.618916 7_3:-82821903 Msa1130660:CDS
CAGAGCACAAAGAGCTTCCG+CGG 0.621196 7_3:-82819269 Msa1130660:CDS
TTGAGTTTGTCTGGTATCCG+CGG 0.621664 7_3:+82819252 None:intergenic
CTCAAGCCATACAACAAGCA+AGG 0.624160 7_3:-82819234 Msa1130660:intron
CTGAAAGGAAACCTAGAACA+AGG 0.624217 7_3:-82819468 Msa1130660:CDS
CCAGAACTTCACCTAACCAA+TGG 0.625712 7_3:-82818591 Msa1130660:CDS
AAGAAAGGAAACAAATGGCG+AGG 0.628017 7_3:-82820743 Msa1130660:CDS
GTAATTGAGTGTGGATATGG+TGG 0.636582 7_3:+82821871 None:intergenic
GAAAGCGGCCAAGGCACTGG+AGG 0.643194 7_3:-82818901 Msa1130660:CDS
ACGAACCAATCAAAGGCATG+GGG 0.643505 7_3:+82822018 None:intergenic
AGAAAGGAAACAAATGGCGA+GGG 0.644627 7_3:-82820742 Msa1130660:CDS
TCTAGCTTGGAATTCACCAA+AGG 0.650621 7_3:+82819307 None:intergenic
AAGCTATGGGAAATGAGGCG+TGG 0.656388 7_3:-82820918 Msa1130660:CDS
CCTCGCTCAAACTAACCGAA+GGG 0.662267 7_3:+82818760 None:intergenic
CCTTAGGATTCTGCATAGCG+AGG 0.673579 7_3:+82821423 None:intergenic
TAAAGAGAAAGACACCGGGT+GGG 0.687372 7_3:-82818055 Msa1130660:three_prime_UTR
ATAAAGAGAAAGACACCGGG+TGG 0.689303 7_3:-82818056 Msa1130660:three_prime_UTR
ATAATAAAGAGAAAGACACC+GGG 0.719692 7_3:-82818059 Msa1130660:three_prime_UTR
CGAACCAATCAAAGGCATGG+GGG 0.723915 7_3:+82822019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATATTAACTTTTGTTT+TGG - chr7_3:82820222-82820241 Msa1130660:intron 10.0%
!! GTTATTAAAGAAATTATATT+AGG + chr7_3:82820301-82820320 None:intergenic 10.0%
!!! TTATTTTAATTGATTTCTTT+TGG - chr7_3:82821131-82821150 Msa1130660:intron 10.0%
!!! AAATACTAAATTTCAATTTT+CGG + chr7_3:82821174-82821193 None:intergenic 10.0%
!! ACATTAAAAAGTAACAAAAA+TGG + chr7_3:82819289-82819308 None:intergenic 15.0%
!!! TATAAATTACATGTTTTAGA+TGG - chr7_3:82820481-82820500 Msa1130660:intron 15.0%
!! TATTTCATGAAAATATATAC+AGG + chr7_3:82821368-82821387 None:intergenic 15.0%
!!! ATGTATCTATATTAGTTTAT+AGG - chr7_3:82822150-82822169 Msa1130660:five_prime_UTR 15.0%
!! TAATTATGATGAAGCATAAT+CGG + chr7_3:82818634-82818653 None:intergenic 20.0%
!!! AGAATTTCTAAAGCTAATAA+AGG - chr7_3:82818715-82818734 Msa1130660:CDS 20.0%
!! AAGTATTATTAGATAAAGAG+AGG + chr7_3:82818835-82818854 None:intergenic 20.0%
!! TCTTAAATCTTAAAACAATG+AGG - chr7_3:82818972-82818991 Msa1130660:intron 20.0%
!! TTAAGATTCAAAGAAAGAAA+AGG - chr7_3:82819053-82819072 Msa1130660:intron 20.0%
!! TAAGATTCAAAGAAAGAAAA+GGG - chr7_3:82819054-82819073 Msa1130660:intron 20.0%
!!! ATGTGTTTCTAGTTAATAAT+GGG + chr7_3:82819849-82819868 None:intergenic 20.0%
!! ATCAATAGTTATGTCATTAT+TGG + chr7_3:82819955-82819974 None:intergenic 20.0%
!! AAATTATATTAGGCACTAAT+TGG + chr7_3:82820291-82820310 None:intergenic 20.0%
!! TAATTATACTAGGCATTTAT+TGG + chr7_3:82820331-82820350 None:intergenic 20.0%
!! CCTAGTATAATTAAAAAGTT+GGG - chr7_3:82820338-82820357 Msa1130660:intron 20.0%
!! ATATAAAAGAATTTACACCT+CGG + chr7_3:82820372-82820391 None:intergenic 20.0%
!! TTGTATAAACTATAAAAGAG+AGG + chr7_3:82820411-82820430 None:intergenic 20.0%
!!! CTCTTTTATAGTTTATACAA+AGG - chr7_3:82820411-82820430 Msa1130660:intron 20.0%
!!! TTTTCTGTAGGATTTTATTT+AGG - chr7_3:82820722-82820741 Msa1130660:CDS 20.0%
!!! TTTCTGTAGGATTTTATTTA+GGG - chr7_3:82820723-82820742 Msa1130660:CDS 20.0%
!! GATTTAACAGAAAAATATGT+TGG + chr7_3:82820786-82820805 None:intergenic 20.0%
!!! ACATATTTTTCTGTTAAATC+AGG - chr7_3:82820786-82820805 Msa1130660:CDS 20.0%
!!! AGATTAAATCATAAAAGTAC+AGG - chr7_3:82821308-82821327 Msa1130660:intron 20.0%
!!! GATATTATTTTCTATTGTGT+TGG - chr7_3:82822218-82822237 Msa1130660:five_prime_UTR 20.0%
!! TCTTTCTTTTTCTATTCACT+CGG + chr7_3:82818058-82818077 None:intergenic 25.0%
!!! TGAATGAAGGATTTTGATAA+TGG + chr7_3:82818182-82818201 None:intergenic 25.0%
!! AAGTGATTGTTGTTGAATTT+AGG + chr7_3:82818589-82818608 None:intergenic 25.0%
! TAAATTCAACAACAATCACT+TGG - chr7_3:82818588-82818607 Msa1130660:CDS 25.0%
! AGGAAGAAAAAGAAAAGAAT+TGG + chr7_3:82819180-82819199 None:intergenic 25.0%
! AAAATGAAGTTGACTAATCT+TGG - chr7_3:82819229-82819248 Msa1130660:intron 25.0%
! AAAAGTAACAAAAATGGTGA+TGG + chr7_3:82819283-82819302 None:intergenic 25.0%
! ATGTTAACATATACACTTAC+GGG + chr7_3:82819689-82819708 None:intergenic 25.0%
! GATGTTAACATATACACTTA+CGG + chr7_3:82819690-82819709 None:intergenic 25.0%
!!! CATGTGTTTCTAGTTAATAA+TGG + chr7_3:82819850-82819869 None:intergenic 25.0%
!!! TTTCCAGTTTTGTAAAAGAA+TGG - chr7_3:82819994-82820013 Msa1130660:intron 25.0%
! CGTATTTGCAAATTAAAAAC+AGG - chr7_3:82820107-82820126 Msa1130660:intron 25.0%
! ACTTAGATCAATTAGAATAG+AGG - chr7_3:82820179-82820198 Msa1130660:intron 25.0%
! GAAAGAATATCAACATAGAA+AGG + chr7_3:82820256-82820275 None:intergenic 25.0%
! GCCTAGTATAATTAAAAAGT+TGG - chr7_3:82820337-82820356 Msa1130660:intron 25.0%
!!! CCCAACTTTTTAATTATACT+AGG + chr7_3:82820341-82820360 None:intergenic 25.0%
! TAATTAAAAAGTTGGGTCAA+AGG - chr7_3:82820345-82820364 Msa1130660:intron 25.0%
! TATAAAAGAATTTACACCTC+GGG + chr7_3:82820371-82820390 None:intergenic 25.0%
! TGACTATTCTGATATTCATT+AGG + chr7_3:82820515-82820534 None:intergenic 25.0%
!! CAACATCCATTTTCTATATA+GGG + chr7_3:82820544-82820563 None:intergenic 25.0%
!! TCAACATCCATTTTCTATAT+AGG + chr7_3:82820545-82820564 None:intergenic 25.0%
!!! TTTTGAAATGGATTTCTTCT+TGG + chr7_3:82820905-82820924 None:intergenic 25.0%
!!! ATCAGAATCTCTTTTTGAAA+TGG + chr7_3:82820917-82820936 None:intergenic 25.0%
! ATGATCATAAAAAACCAAAG+AGG + chr7_3:82821247-82821266 None:intergenic 25.0%
!!! TCTTTGGTTTTTTATGATCA+TGG - chr7_3:82821246-82821265 Msa1130660:intron 25.0%
!! ATCTATCTTTTGTGTATCAA+TGG + chr7_3:82821534-82821553 None:intergenic 25.0%
! TTTGTACTATGTTTGAAAAC+TGG + chr7_3:82821985-82822004 None:intergenic 25.0%
TAGTTGTTTGTTTGTAACGA+AGG - chr7_3:82818091-82818110 Msa1130660:three_prime_UTR 30.0%
!!! TGAAGGATTTTGATAATGGT+GGG + chr7_3:82818178-82818197 None:intergenic 30.0%
!!! ATGAAGGATTTTGATAATGG+TGG + chr7_3:82818179-82818198 None:intergenic 30.0%
! TAAAAGTACGAACCAATCAA+AGG + chr7_3:82818317-82818336 None:intergenic 30.0%
TAACAAATGCACATTTACTG+AGG - chr7_3:82818422-82818441 Msa1130660:CDS 30.0%
AACAAATGCACATTTACTGA+GGG - chr7_3:82818423-82818442 Msa1130660:CDS 30.0%
! ATGCTTTTACTACTACTACT+AGG - chr7_3:82818494-82818513 Msa1130660:CDS 30.0%
! TGATTGTTGTTGAATTTAGG+TGG + chr7_3:82818586-82818605 None:intergenic 30.0%
! ATGATGATGATGATGATGAA+CGG - chr7_3:82818659-82818678 Msa1130660:CDS 30.0%
AAGTTAGTAAGTAAGTTACC+AGG + chr7_3:82818775-82818794 None:intergenic 30.0%
!! TAACAAAAATGGTGATGGAA+AGG + chr7_3:82819278-82819297 None:intergenic 30.0%
ATAAAGAAGGAGATTGTATG+GGG + chr7_3:82819339-82819358 None:intergenic 30.0%
CATAAAGAAGGAGATTGTAT+GGG + chr7_3:82819340-82819359 None:intergenic 30.0%
ACAAAAATGAAGATTAGTGC+TGG - chr7_3:82819377-82819396 Msa1130660:CDS 30.0%
!! ATTTAATTGCAGAAGCATCT+AGG - chr7_3:82819471-82819490 Msa1130660:CDS 30.0%
TGTTGAAGAAAGGAAACAAA+TGG - chr7_3:82819577-82819596 Msa1130660:intron 30.0%
!! GTTTCTAGTTAATAATGGGA+GGG + chr7_3:82819845-82819864 None:intergenic 30.0%
!! TGTTTCTAGTTAATAATGGG+AGG + chr7_3:82819846-82819865 None:intergenic 30.0%
! CTTTTACAAAACTGGAAAAC+AGG + chr7_3:82819992-82820011 None:intergenic 30.0%
! TCACCATTCTTTTACAAAAC+TGG + chr7_3:82820000-82820019 None:intergenic 30.0%
GCAATTACAAGAATCTGTAT+AGG + chr7_3:82820058-82820077 None:intergenic 30.0%
CAGATTCTTGTAATTGCTAA+CGG - chr7_3:82820061-82820080 Msa1130660:intron 30.0%
TATACTAGGCATTTATTGGA+CGG + chr7_3:82820327-82820346 None:intergenic 30.0%
ATAGTTTATACAAAGGTTGC+AGG - chr7_3:82820418-82820437 Msa1130660:intron 30.0%
TAGTTTATACAAAGGTTGCA+GGG - chr7_3:82820419-82820438 Msa1130660:intron 30.0%
CAAAACTTATCTAGACCATT+TGG + chr7_3:82820632-82820651 None:intergenic 30.0%
!! AGAGAGAAAAGTACCAAAAA+GGG + chr7_3:82820757-82820776 None:intergenic 30.0%
!! AAGAGAGAAAAGTACCAAAA+AGG + chr7_3:82820758-82820777 None:intergenic 30.0%
TTCAGTAGAATGATGATACT+TGG + chr7_3:82820842-82820861 None:intergenic 30.0%
AGTATCATCATTCTACTGAA+AGG - chr7_3:82820842-82820861 Msa1130660:CDS 30.0%
! GAGGTTCTTATCATTTTCTT+AGG + chr7_3:82821228-82821247 None:intergenic 30.0%
GAAAATGATAAGAACCTCTT+TGG - chr7_3:82821230-82821249 Msa1130660:intron 30.0%
!!! TTGGTTTTTTATGATCATGG+TGG - chr7_3:82821249-82821268 Msa1130660:intron 30.0%
TACAGGATAATAGTTACAGT+TGG + chr7_3:82821351-82821370 None:intergenic 30.0%
!! TACAAGTTCTCTGAAGATTT+TGG - chr7_3:82821677-82821696 Msa1130660:CDS 30.0%
AGATTGTGTTTCATCTTCAA+GGG + chr7_3:82821876-82821895 None:intergenic 30.0%
TAGATTGTGTTTCATCTTCA+AGG + chr7_3:82821877-82821896 None:intergenic 30.0%
CACTCTTGAAGAAACATTTA+TGG + chr7_3:82822035-82822054 None:intergenic 30.0%
! CTCTTTAGCTAAAGCTATTT+TGG + chr7_3:82822127-82822146 None:intergenic 30.0%
GTGTCTTTCTCTTTATTATC+CGG + chr7_3:82822265-82822284 None:intergenic 30.0%
GATAATAAAGAGAAAGACAC+CGG - chr7_3:82822265-82822284 Msa1130660:five_prime_UTR 30.0%
ATAATAAAGAGAAAGACACC+GGG - chr7_3:82822266-82822285 Msa1130660:five_prime_UTR 30.0%
TGTTTGTTTGTAACGAAGGA+AGG - chr7_3:82818095-82818114 Msa1130660:three_prime_UTR 35.0%
CTTGTAATTGAGTGTGGATA+TGG + chr7_3:82818460-82818479 None:intergenic 35.0%
CTTCTTCTTGTAATTGAGTG+TGG + chr7_3:82818466-82818485 None:intergenic 35.0%
! CTTTTACTACTACTACTAGG+AGG - chr7_3:82818497-82818516 Msa1130660:CDS 35.0%
ATTCAACAACAATCACTTGG+AGG - chr7_3:82818591-82818610 Msa1130660:CDS 35.0%
CTAATAAAGGAAACACTCCA+TGG - chr7_3:82818728-82818747 Msa1130660:CDS 35.0%
!! TGCAAAGTTTCTGGTGAAAT+AGG + chr7_3:82818861-82818880 None:intergenic 35.0%
AGAAACTTTGCAGAAGATCA+GGG - chr7_3:82818869-82818888 Msa1130660:CDS 35.0%
! TACCAAGTAGTTTGAGTTTG+AGG - chr7_3:82819093-82819112 Msa1130660:intron 35.0%
! ACCAAGTAGTTTGAGTTTGA+GGG - chr7_3:82819094-82819113 Msa1130660:intron 35.0%
! TCATTGCGAAAGGATTTGTT+AGG + chr7_3:82819200-82819219 None:intergenic 35.0%
CCATAAAGAAGGAGATTGTA+TGG + chr7_3:82819341-82819360 None:intergenic 35.0%
CCATACAATCTCCTTCTTTA+TGG - chr7_3:82819338-82819357 Msa1130660:CDS 35.0%
TACTGTGCAATCCATAAAGA+AGG + chr7_3:82819352-82819371 None:intergenic 35.0%
ATGGAATTCCTATGAAACCT+TGG - chr7_3:82819523-82819542 Msa1130660:intron 35.0%
! AATTTTCCTTCTCTGTTCAG+GGG + chr7_3:82819636-82819655 None:intergenic 35.0%
! CAATTTTCCTTCTCTGTTCA+GGG + chr7_3:82819637-82819656 None:intergenic 35.0%
AGAAGCTATTGCTGCAAAAT+GGG - chr7_3:82819658-82819677 Msa1130660:intron 35.0%
TTGTAATTGCTAACGGAAAC+AGG - chr7_3:82820068-82820087 Msa1130660:intron 35.0%
TTTGGCACAACAAAACATCA+GGG + chr7_3:82820133-82820152 None:intergenic 35.0%
ATTTGGCACAACAAAACATC+AGG + chr7_3:82820134-82820153 None:intergenic 35.0%
AAAATCTGTTGCGTGAGATT+TGG + chr7_3:82820151-82820170 None:intergenic 35.0%
AGTTTATACAAAGGTTGCAG+GGG - chr7_3:82820420-82820439 Msa1130660:intron 35.0%
! CCATTTTCTATATAGGGCAA+CGG + chr7_3:82820538-82820557 None:intergenic 35.0%
AAAATCAAAGTCCACAGACA+AGG + chr7_3:82820585-82820604 None:intergenic 35.0%
AAGTTACACGTTACACCAAA+TGG - chr7_3:82820614-82820633 Msa1130660:intron 35.0%
! TTTTTCCAGGTACAACACTT+TGG + chr7_3:82820655-82820674 None:intergenic 35.0%
!! GTACTTTGACAACTTTTTCC+AGG + chr7_3:82820668-82820687 None:intergenic 35.0%
! CTTGCAAGTTTCTTTTCTGT+AGG - chr7_3:82820710-82820729 Msa1130660:CDS 35.0%
! TTTGGTACTTTTCTCTCTTC+AGG - chr7_3:82820759-82820778 Msa1130660:CDS 35.0%
! TTTCTTTTTCTCAGCTGGAT+CGG + chr7_3:82820979-82820998 None:intergenic 35.0%
ATTCACCAAAGGATCCTTAT+AGG + chr7_3:82821010-82821029 None:intergenic 35.0%
GTTCTTTATCATCTCTAGCT+TGG + chr7_3:82821034-82821053 None:intergenic 35.0%
ATTAGAGAAGACTGAGCAAT+GGG + chr7_3:82821467-82821486 None:intergenic 35.0%
TATTAGAGAAGACTGAGCAA+TGG + chr7_3:82821468-82821487 None:intergenic 35.0%
AGTTCGAAACCATTCAGAAA+TGG - chr7_3:82821616-82821635 Msa1130660:CDS 35.0%
ATCTGGCTATTCAAACTGAA+AGG + chr7_3:82821773-82821792 None:intergenic 35.0%
!! TTTCCCTTTGCTGATTTGAT+GGG + chr7_3:82821808-82821827 None:intergenic 35.0%
!!! CCACTTTTTAGTTGCAATAG+GGG + chr7_3:82821903-82821922 None:intergenic 35.0%
!!! CCCACTTTTTAGTTGCAATA+GGG + chr7_3:82821904-82821923 None:intergenic 35.0%
CCCTATTGCAACTAAAAAGT+GGG - chr7_3:82821901-82821920 Msa1130660:CDS 35.0%
!!! ACCCACTTTTTAGTTGCAAT+AGG + chr7_3:82821905-82821924 None:intergenic 35.0%
TGTTTGTAACGAAGGAAGGA+AGG - chr7_3:82818099-82818118 Msa1130660:three_prime_UTR 40.0%
!!! GGATTTTGATAATGGTGGGT+GGG + chr7_3:82818174-82818193 None:intergenic 40.0%
!!! AGGATTTTGATAATGGTGGG+TGG + chr7_3:82818175-82818194 None:intergenic 40.0%
TGACGCAGATGAATGAATGA+AGG + chr7_3:82818195-82818214 None:intergenic 40.0%
! TACGAACCAATCAAAGGCAT+GGG + chr7_3:82818311-82818330 None:intergenic 40.0%
GTAATTGAGTGTGGATATGG+TGG + chr7_3:82818457-82818476 None:intergenic 40.0%
TTACTACTACTACTAGGAGG+TGG - chr7_3:82818500-82818519 Msa1130660:CDS 40.0%
TGATGAAGCATAATCGGATG+AGG + chr7_3:82818628-82818647 None:intergenic 40.0%
TGCTTTCTTCCTTTGTTCCA+TGG + chr7_3:82818748-82818767 None:intergenic 40.0%
CTGATCTTCTGCAAAGTTTC+TGG + chr7_3:82818870-82818889 None:intergenic 40.0%
CAGAAACTTTGCAGAAGATC+AGG - chr7_3:82818868-82818887 Msa1130660:CDS 40.0%
TGCTTACATGACATCACCTT+AGG + chr7_3:82818921-82818940 None:intergenic 40.0%
ACAATGAGGACATGCAACAA+TGG - chr7_3:82818986-82819005 Msa1130660:intron 40.0%
! CCAAGTAGTTTGAGTTTGAG+GGG - chr7_3:82819095-82819114 Msa1130660:intron 40.0%
! CAAGTAGTTTGAGTTTGAGG+GGG - chr7_3:82819096-82819115 Msa1130660:intron 40.0%
AATCCTTTCGCAATGAATGC+AGG - chr7_3:82819204-82819223 Msa1130660:intron 40.0%
GGAGATTGTATGGGGTAAAA+GGG + chr7_3:82819331-82819350 None:intergenic 40.0%
AGGAGATTGTATGGGGTAAA+AGG + chr7_3:82819332-82819351 None:intergenic 40.0%
TGAGAAAGCTATGGGAAATG+AGG - chr7_3:82819402-82819421 Msa1130660:CDS 40.0%
CTGTTCATCCAAGGTTTCAT+AGG + chr7_3:82819534-82819553 None:intergenic 40.0%
AAGAAAGGAAACAAATGGCG+AGG - chr7_3:82819582-82819601 Msa1130660:intron 40.0%
AGAAAGGAAACAAATGGCGA+GGG - chr7_3:82819583-82819602 Msa1130660:intron 40.0%
! GCAATTTTCCTTCTCTGTTC+AGG + chr7_3:82819638-82819657 None:intergenic 40.0%
CAGAAGCTATTGCTGCAAAA+TGG - chr7_3:82819657-82819676 Msa1130660:intron 40.0%
CTAGAAACACATGCAGTTTC+AGG - chr7_3:82819857-82819876 Msa1130660:intron 40.0%
CTGGATTCTCTTGCTTCTAA+AGG - chr7_3:82819883-82819902 Msa1130660:intron 40.0%
!! CTATAAAAGAGAGGAGTGCT+AGG + chr7_3:82820402-82820421 None:intergenic 40.0%
GTTTATACAAAGGTTGCAGG+GGG - chr7_3:82820421-82820440 Msa1130660:intron 40.0%
CCGTTGCCCTATATAGAAAA+TGG - chr7_3:82820535-82820554 Msa1130660:intron 40.0%
!!! TTTTGCCAAAGTGTTGTACC+TGG - chr7_3:82820647-82820666 Msa1130660:intron 40.0%
!!! TAGGGTTGTTTCTCCCTTTT+TGG - chr7_3:82820741-82820760 Msa1130660:CDS 40.0%
CTGAAAGGAAACCTAGAACA+AGG - chr7_3:82820857-82820876 Msa1130660:CDS 40.0%
GAGAGTTGTGCACTATAACT+GGG + chr7_3:82820883-82820902 None:intergenic 40.0%
!! GATCGGCTTAACAATTTTGG+AGG + chr7_3:82820962-82820981 None:intergenic 40.0%
!! CTGGATCGGCTTAACAATTT+TGG + chr7_3:82820965-82820984 None:intergenic 40.0%
! GGGATTTTCTTTTTCTCAGC+TGG + chr7_3:82820984-82821003 None:intergenic 40.0%
AAGAAAATCCCCTGCCTATA+AGG - chr7_3:82820993-82821012 Msa1130660:intron 40.0%
! TCTAGCTTGGAATTCACCAA+AGG + chr7_3:82821021-82821040 None:intergenic 40.0%
TTGTATGGCTTGAGTTTGTC+TGG + chr7_3:82821085-82821104 None:intergenic 40.0%
AGCTTCAGCTATAAGCTTTC+TGG + chr7_3:82821495-82821514 None:intergenic 40.0%
TTACTTGGGCCATTTCTGAA+TGG + chr7_3:82821628-82821647 None:intergenic 40.0%
TCAGAAATGGCCCAAGTAAA+TGG - chr7_3:82821629-82821648 Msa1130660:CDS 40.0%
TGTTGTGCGTCCATTTACTT+GGG + chr7_3:82821642-82821661 None:intergenic 40.0%
ATGTTGTGCGTCCATTTACT+TGG + chr7_3:82821643-82821662 None:intergenic 40.0%
TCAGAGAACTTGTAGAAGCT+TGG + chr7_3:82821671-82821690 None:intergenic 40.0%
!! AGATTTTGGTGAACTTTCCC+TGG - chr7_3:82821691-82821710 Msa1130660:CDS 40.0%
! AAGAAGCACATCCATTGGTT+AGG + chr7_3:82821748-82821767 None:intergenic 40.0%
! AGGTAAAGAAGCACATCCAT+TGG + chr7_3:82821753-82821772 None:intergenic 40.0%
!! GTTTCCCTTTGCTGATTTGA+TGG + chr7_3:82821809-82821828 None:intergenic 40.0%
CCCCTATTGCAACTAAAAAG+TGG - chr7_3:82821900-82821919 Msa1130660:CDS 40.0%
ATGTCTACCTAGACAATTGG+TGG + chr7_3:82822099-82822118 None:intergenic 40.0%
ACCAATTGTCTAGGTAGACA+TGG - chr7_3:82822098-82822117 Msa1130660:five_prime_UTR 40.0%
TCCATGTCTACCTAGACAAT+TGG + chr7_3:82822102-82822121 None:intergenic 40.0%
!!! GGTAGTTTTGTAGCATGTAG+TGG - chr7_3:82822239-82822258 Msa1130660:five_prime_UTR 40.0%
TGTAACGAAGGAAGGAAGGA+AGG - chr7_3:82818103-82818122 Msa1130660:three_prime_UTR 45.0%
AGCAACGTTATCCTCTTCTC+TGG - chr7_3:82818131-82818150 Msa1130660:three_prime_UTR 45.0%
CGTTATCCTCTTCTCTGGTT+TGG - chr7_3:82818136-82818155 Msa1130660:three_prime_UTR 45.0%
TGGAAACCAAACCAGAGAAG+AGG + chr7_3:82818145-82818164 None:intergenic 45.0%
! ACGAACCAATCAAAGGCATG+GGG + chr7_3:82818310-82818329 None:intergenic 45.0%
GTACGAACCAATCAAAGGCA+TGG + chr7_3:82818312-82818331 None:intergenic 45.0%
GAGTGTGGATATGGTGGTAA+TGG + chr7_3:82818451-82818470 None:intergenic 45.0%
! GCAACGGCTTTAATGAGGAA+TGG + chr7_3:82818535-82818554 None:intergenic 45.0%
AACTTCTCGCTCTCATCAAG+TGG + chr7_3:82818685-82818704 None:intergenic 45.0%
GGAAACACTCCATGGAACAA+AGG - chr7_3:82818736-82818755 Msa1130660:CDS 45.0%
! AAAGGAAGAAAGCACAGTCC+TGG - chr7_3:82818754-82818773 Msa1130660:CDS 45.0%
CCCCTCAAACTCAAACTACT+TGG + chr7_3:82819098-82819117 None:intergenic 45.0%
TGACCTGCATTCATTGCGAA+AGG + chr7_3:82819210-82819229 None:intergenic 45.0%
TGCTGGAGTGAGAAAGCTAT+GGG - chr7_3:82819394-82819413 Msa1130660:CDS 45.0%
!! ATTGCAGAAGCATCTAGGCA+AGG - chr7_3:82819476-82819495 Msa1130660:CDS 45.0%
CTGCTTAAGCTGTTCATCCA+AGG + chr7_3:82819543-82819562 None:intergenic 45.0%
CTTGGATGAACAGCTTAAGC+AGG - chr7_3:82819541-82819560 Msa1130660:intron 45.0%
ATGAACAGCTTAAGCAGGAG+TGG - chr7_3:82819546-82819565 Msa1130660:intron 45.0%
! GGTTGCTCAGTGTTGAAGAA+AGG - chr7_3:82819567-82819586 Msa1130660:intron 45.0%
! CACATGCAGTTTCAGGTAAC+TGG - chr7_3:82819864-82819883 Msa1130660:intron 45.0%
AGTGCGGTCAGAATAGTCAA+AGG - chr7_3:82820451-82820470 Msa1130660:intron 45.0%
TGTGTTTCCATCCTTGTCTG+TGG - chr7_3:82820571-82820590 Msa1130660:intron 45.0%
TCAAAGTCCACAGACAAGGA+TGG + chr7_3:82820581-82820600 None:intergenic 45.0%
TTGCAGAGCAGACTCTTTCA+CGG + chr7_3:82820816-82820835 None:intergenic 45.0%
!! CTATAACTGGGCCTTGTTCT+AGG + chr7_3:82820871-82820890 None:intergenic 45.0%
GGAGAGTTGTGCACTATAAC+TGG + chr7_3:82820884-82820903 None:intergenic 45.0%
CAAAGGATCCTTATAGGCAG+GGG + chr7_3:82821004-82821023 None:intergenic 45.0%
CCAAAGGATCCTTATAGGCA+GGG + chr7_3:82821005-82821024 None:intergenic 45.0%
ACCAAAGGATCCTTATAGGC+AGG + chr7_3:82821006-82821025 None:intergenic 45.0%
TTGAGTTTGTCTGGTATCCG+CGG + chr7_3:82821076-82821095 None:intergenic 45.0%
CTCAAGCCATACAACAAGCA+AGG - chr7_3:82821091-82821110 Msa1130660:CDS 45.0%
!! GGTCTACCTTGCTTGTTGTA+TGG + chr7_3:82821100-82821119 None:intergenic 45.0%
!! ATGGTGGATGCGATGAACAT+TGG - chr7_3:82821265-82821284 Msa1130660:intron 45.0%
GATTGCTGAAGCTGAGAAAG+CGG - chr7_3:82821409-82821428 Msa1130660:intron 45.0%
AGATGACTGTAGTGTCCCTT+CGG - chr7_3:82821550-82821569 Msa1130660:intron 45.0%
TAGTTTGAGCGAGGTCAATC+AGG - chr7_3:82821574-82821593 Msa1130660:CDS 45.0%
!! AGTTCTGGAACGCCATTAAC+TGG + chr7_3:82821722-82821741 None:intergenic 45.0%
! CCATTGGTTAGGTGAAGTTC+TGG + chr7_3:82821737-82821756 None:intergenic 45.0%
CCAGAACTTCACCTAACCAA+TGG - chr7_3:82821734-82821753 Msa1130660:CDS 45.0%
ATGGGCAGTCTTGGTTTATC+TGG + chr7_3:82821790-82821809 None:intergenic 45.0%
ACTGCCCATCAAATCAGCAA+AGG - chr7_3:82821801-82821820 Msa1130660:CDS 45.0%
CTGCCCATCAAATCAGCAAA+GGG - chr7_3:82821802-82821821 Msa1130660:CDS 45.0%
TCAGCAAAGGGAAACAGAAC+AGG - chr7_3:82821814-82821833 Msa1130660:CDS 45.0%
! GCAACTAAAAAGTGGGTTCG+CGG - chr7_3:82821908-82821927 Msa1130660:CDS 45.0%
! TGGCTGGTCAGCTAATGATT+TGG + chr7_3:82822079-82822098 None:intergenic 45.0%
! GTTTTGTAGCATGTAGTGGC+CGG - chr7_3:82822243-82822262 Msa1130660:five_prime_UTR 45.0%
ATAAAGAGAAAGACACCGGG+TGG - chr7_3:82822269-82822288 Msa1130660:five_prime_UTR 45.0%
TAAAGAGAAAGACACCGGGT+GGG - chr7_3:82822270-82822289 Msa1130660:five_prime_UTR 45.0%
!! ATTAAAATAAGTATTAAAAT+GGG + chr7_3:82821121-82821140 None:intergenic 5.0%
!! AATTAAAATAAGTATTAAAA+TGG + chr7_3:82821122-82821141 None:intergenic 5.0%
ACGAAGGAAGGAAGGAAGGA+AGG - chr7_3:82818107-82818126 Msa1130660:three_prime_UTR 50.0%
!! TAATGGTGGGTGGGATTCGA+TGG + chr7_3:82818165-82818184 None:intergenic 50.0%
! CGAACCAATCAAAGGCATGG+GGG + chr7_3:82818309-82818328 None:intergenic 50.0%
CTACTACTACTAGGAGGTGG+AGG - chr7_3:82818503-82818522 Msa1130660:CDS 50.0%
! TAGCGGCAACGGCTTTAATG+AGG + chr7_3:82818540-82818559 None:intergenic 50.0%
AACCATCGTAGCAGCAGTAG+CGG + chr7_3:82818557-82818576 None:intergenic 50.0%
CCTTAGGATTCTGCATAGCG+AGG + chr7_3:82818905-82818924 None:intergenic 50.0%
CCTCGCTATGCAGAATCCTA+AGG - chr7_3:82818902-82818921 Msa1130660:CDS 50.0%
GTGCTGGAGTGAGAAAGCTA+TGG - chr7_3:82819393-82819412 Msa1130660:CDS 50.0%
AAGCTATGGGAAATGAGGCG+TGG - chr7_3:82819407-82819426 Msa1130660:CDS 50.0%
TATGGGAAATGAGGCGTGGA+AGG - chr7_3:82819411-82819430 Msa1130660:CDS 50.0%
AATGAGGCGTGGAAGGAAGA+TGG - chr7_3:82819418-82819437 Msa1130660:CDS 50.0%
!! AGGAGAGTTGCTGCTTTGAG+TGG - chr7_3:82819444-82819463 Msa1130660:CDS 50.0%
! GCATCTAGGCAAGGCTTTGT+TGG - chr7_3:82819485-82819504 Msa1130660:CDS 50.0%
!! TAGGCAAGGCTTTGTTGGTC+AGG - chr7_3:82819490-82819509 Msa1130660:CDS 50.0%
TTGGTCAGGAAGAGCTGCAA+TGG - chr7_3:82819504-82819523 Msa1130660:CDS 50.0%
TTGGGTGCTCTGTTGCTAAC+TGG + chr7_3:82819611-82819630 None:intergenic 50.0%
CTTCTCTGTTCAGGGGACTT+GGG + chr7_3:82819629-82819648 None:intergenic 50.0%
CTAGGCATTTATTGGACGGC+AGG + chr7_3:82820323-82820342 None:intergenic 50.0%
TATACAAAGGTTGCAGGGGG+AGG - chr7_3:82820424-82820443 Msa1130660:intron 50.0%
CCCTGCCTATAAGGATCCTT+TGG - chr7_3:82821002-82821021 Msa1130660:intron 50.0%
CCTCGCTCAAACTAACCGAA+GGG + chr7_3:82821568-82821587 None:intergenic 50.0%
ACCTCGCTCAAACTAACCGA+AGG + chr7_3:82821569-82821588 None:intergenic 50.0%
TCCCTGGAGAGACCAGTTAA+TGG - chr7_3:82821707-82821726 Msa1130660:CDS 50.0%
! GCCATTAACTGGTCTCTCCA+GGG + chr7_3:82821711-82821730 None:intergenic 50.0%
!! GCTGATTTGATGGGCAGTCT+TGG + chr7_3:82821799-82821818 None:intergenic 50.0%
! CTAAAAAGTGGGTTCGCGGA+AGG - chr7_3:82821912-82821931 Msa1130660:intron 50.0%
TGACCAGCCACCAATTGTCT+AGG - chr7_3:82822089-82822108 Msa1130660:five_prime_UTR 50.0%
! CTACCTAGACAATTGGTGGC+TGG + chr7_3:82822095-82822114 None:intergenic 50.0%
TGAGCCCCCATGCCTTTGAT+TGG - chr7_3:82818302-82818321 Msa1130660:three_prime_UTR 55.0%
CTACTACTAGGAGGTGGAGG+AGG - chr7_3:82818506-82818525 Msa1130660:CDS 55.0%
GAGAGGAGAGAGAGAGAGAG+AGG + chr7_3:82818818-82818837 None:intergenic 55.0%
CCTTCTCTGTTCAGGGGACT+TGG + chr7_3:82819630-82819649 None:intergenic 55.0%
CCAAGTCCCCTGAACAGAGA+AGG - chr7_3:82819627-82819646 Msa1130660:intron 55.0%
AAAGTTGGGTCAAAGGCCCG+AGG - chr7_3:82820352-82820371 Msa1130660:intron 55.0%
CAGAGCACAAAGAGCTTCCG+CGG - chr7_3:82821056-82821075 Msa1130660:intron 55.0%
TGAAGCTGAGAAAGCGGCCA+AGG - chr7_3:82821415-82821434 Msa1130660:intron 55.0%
!! CCCTTCGGTTAGTTTGAGCG+AGG - chr7_3:82821565-82821584 Msa1130660:intron 55.0%
! CGCCATTAACTGGTCTCTCC+AGG + chr7_3:82821712-82821731 None:intergenic 55.0%
AGCGAACGAGCGAGAGTGAG+AGG + chr7_3:82818267-82818286 None:intergenic 60.0%
CGTAGCAGCAGTAGCGGCAA+CGG + chr7_3:82818551-82818570 None:intergenic 60.0%
TGCCGCTACTGCTGCTACGA+TGG - chr7_3:82818552-82818571 Msa1130660:CDS 60.0%
GCGTGGAAGGAAGATGGTGC+AGG - chr7_3:82819424-82819443 Msa1130660:CDS 60.0%
TGCAGGGGGAGGATGAAGTG+CGG - chr7_3:82820435-82820454 Msa1130660:intron 60.0%
TGAGAAAGCGGCCAAGGCAC+TGG - chr7_3:82821421-82821440 Msa1130660:intron 60.0%
!! CAAGGCACTGGAGGTTGCTG+CGG - chr7_3:82821433-82821452 Msa1130660:CDS 60.0%
!! GAAAGCGGCCAAGGCACTGG+AGG - chr7_3:82821424-82821443 Msa1130660:CDS 65.0%
CGCAGCAACCTCCAGTGCCT+TGG + chr7_3:82821435-82821454 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82818053 82822294 82818053 ID=Msa1130660;Name=Msa1130660
chr7_3 mRNA 82818053 82822294 82818053 ID=Msa1130660-mRNA-1;Parent=Msa1130660;Name=Msa1130660-mRNA-1;_AED=0.18;_eAED=0.18;_QI=258|1|1|1|1|1|7|330|548
chr7_3 exon 82818053 82818944 82818053 ID=Msa1130660-mRNA-1:exon:24542;Parent=Msa1130660-mRNA-1
chr7_3 exon 82819235 82819539 82819235 ID=Msa1130660-mRNA-1:exon:24541;Parent=Msa1130660-mRNA-1
chr7_3 exon 82820659 82820977 82820659 ID=Msa1130660-mRNA-1:exon:24540;Parent=Msa1130660-mRNA-1
chr7_3 exon 82821084 82821121 82821084 ID=Msa1130660-mRNA-1:exon:24539;Parent=Msa1130660-mRNA-1
chr7_3 exon 82821424 82821476 82821424 ID=Msa1130660-mRNA-1:exon:24538;Parent=Msa1130660-mRNA-1
chr7_3 exon 82821572 82821928 82821572 ID=Msa1130660-mRNA-1:exon:24537;Parent=Msa1130660-mRNA-1
chr7_3 exon 82822024 82822294 82822024 ID=Msa1130660-mRNA-1:exon:24536;Parent=Msa1130660-mRNA-1
chr7_3 five_prime_UTR 82822037 82822294 82822037 ID=Msa1130660-mRNA-1:five_prime_utr;Parent=Msa1130660-mRNA-1
chr7_3 CDS 82822024 82822036 82822024 ID=Msa1130660-mRNA-1:cds;Parent=Msa1130660-mRNA-1
chr7_3 CDS 82821572 82821928 82821572 ID=Msa1130660-mRNA-1:cds;Parent=Msa1130660-mRNA-1
chr7_3 CDS 82821424 82821476 82821424 ID=Msa1130660-mRNA-1:cds;Parent=Msa1130660-mRNA-1
chr7_3 CDS 82821084 82821121 82821084 ID=Msa1130660-mRNA-1:cds;Parent=Msa1130660-mRNA-1
chr7_3 CDS 82820659 82820977 82820659 ID=Msa1130660-mRNA-1:cds;Parent=Msa1130660-mRNA-1
chr7_3 CDS 82819235 82819539 82819235 ID=Msa1130660-mRNA-1:cds;Parent=Msa1130660-mRNA-1
chr7_3 CDS 82818383 82818944 82818383 ID=Msa1130660-mRNA-1:cds;Parent=Msa1130660-mRNA-1
chr7_3 three_prime_UTR 82818053 82818382 82818053 ID=Msa1130660-mRNA-1:three_prime_utr;Parent=Msa1130660-mRNA-1
Gene Sequence

>Msa1130660

ATGCCTTTGATTGAGATAACAAATGCACATTTACTGAGGGTTCCATTACCACCATATCCACACTCAATTACAAGAAGAAGAATTGACGATGCTTTTACTACTACTACTAGGAGGTGGAGGAGGTTTCCATTCCTCATTAAAGCCGTTGCCGCTACTGCTGCTACGATGGTTCAACAACCACCTAAATTCAACAACAATCACTTGGAGGAGCATCTAAATCCTCATCCGATTATGCTTCATCATAATTATGATGATGATGATGATGATGATGAACGGCCACTTGATGAGAGCGAGAAGTTGAGAAGATTGAGAATTTCTAAAGCTAATAAAGGAAACACTCCATGGAACAAAGGAAGAAAGCACAGTCCTGAAACTTTGCAGAAGATCAGGGAAAGAACACGCCTCGCTATGCAGAATCCTAAGGTCAAAATGAAGTTGACTAATCTTGGACATGCTCAAACTACAGAAACAAAAATGAAGATTAGTGCTGGAGTGAGAAAGCTATGGGAAATGAGGCGTGGAAGGAAGATGGTGCAGGAGAGTTGCTGCTTTGAGTGGCAGAATTTAATTGCAGAAGCATCTAGGCAAGGCTTTGTTGGTCAGGAAGAGCTGCAATGGAATTCCTATGAAACCTTGGATGAACAGCTTAAGCAGGAGTGGTTGCTCAGTGTTGAAGAAAGGAAACAAATGGCGAGGGCACCAGTTAGCAACAGAGCACCCAAGTCCCCTGAACAGAGAAGGAAAATTGCAGAAGCTATTGCTGCAAAATGGGCTGATCCCGATTACCGTGAAAGAGTCTGCTCTGCAATTGCCAAGTATCATCATTCTACTGAAAGGAAACCTAGAACAAGGCCCAGTTATAGTGCACAACTCTCCAAGAAGAAATCCATTTCAAAAAGAGATTCTGATACTAGCATTGTTATTAAGAGTGCCTCCAAAATTGTTAAGCCGATCCAGCTGAGAAAAAGAAAATCCCCTGCCTATAAGGATCCTTTGGTGAATTCCAAGCTAGAGATGATAAAGAACATCAGAGCACAAAGAGCTTCCGCGGATACCAGACAAACTCAAGCCATACAACAAGCAAGACTATTGATTGCTGAAGCTGAGAAAGCGGCCAAGGCACTGGAGGTTGCTGCGGCAAAGAGTCCCATTGCTCAGTCTTCTCTAATAGAAACCAGAAAGCTTATAGCTGAAGCTATTCAATCACTTGAATCCATTGATACACAAAAGATAGATGACTGTAGTGTCCCTTCGGTTAGTTTGAGCGAGGTCAATCAGGAAAACGAATCAGCATTTGAAGTTCGAAACCATTCAGAAATGGCCCAAGTAAATGGACGCACAACATTGTCACCAAGCTTCTACAAGTTCTCTGAAGATTTTGGTGAACTTTCCCTGGAGAGACCAGTTAATGGCGTTCCAGAACTTCACCTAACCAATGGATGTGCTTCTTTACCTTTCAGTTTGAATAGCCAGATAAACCAAGACTGCCCATCAAATCAGCAAAGGGAAACAGAACAGGATGAGAGCAGCGAAGACGAAACAGATCATTCACAGTCCCTTGAAGATGAAACACAATCTAGTTCCCCTATTGCAACTAAAAAGTGGGTTCGCGGAAGGCTTGTTGAAGTGAGTGAAGAGAATCAGTAA

Protein sequence

>Msa1130660

MPLIEITNAHLLRVPLPPYPHSITRRRIDDAFTTTTRRWRRFPFLIKAVAATAATMVQQPPKFNNNHLEEHLNPHPIMLHHNYDDDDDDDERPLDESEKLRRLRISKANKGNTPWNKGRKHSPETLQKIRERTRLAMQNPKVKMKLTNLGHAQTTETKMKISAGVRKLWEMRRGRKMVQESCCFEWQNLIAEASRQGFVGQEELQWNSYETLDEQLKQEWLLSVEERKQMARAPVSNRAPKSPEQRRKIAEAIAAKWADPDYRERVCSAIAKYHHSTERKPRTRPSYSAQLSKKKSISKRDSDTSIVIKSASKIVKPIQLRKRKSPAYKDPLVNSKLEMIKNIRAQRASADTRQTQAIQQARLLIAEAEKAAKALEVAAAKSPIAQSSLIETRKLIAEAIQSLESIDTQKIDDCSVPSVSLSEVNQENESAFEVRNHSEMAQVNGRTTLSPSFYKFSEDFGELSLERPVNGVPELHLTNGCASLPFSLNSQINQDCPSNQQRETEQDESSEDETDHSQSLEDETQSSSPIATKKWVRGRLVEVSEENQ*