Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896760 | XP_003620154.1 | 92.308 | 754 | 12 | 3 | 1 | 750 | 1 | 712 | 0.0 | 1404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896760 | sp|Q9SHY2|YSL7_ARATH | 67.028 | 737 | 185 | 6 | 18 | 748 | 1 | 685 | 0.0 | 1021 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896760 | G7KKB8 | 92.308 | 754 | 12 | 3 | 1 | 750 | 1 | 712 | 0.0 | 1404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029850 | Msa0896760 | 0.815502 | 8.945615e-52 | -8.615850e-47 |
| Msa0102120 | Msa0896760 | 0.823901 | 1.079249e-53 | -8.615850e-47 |
| Msa0621750 | Msa0896760 | -0.803283 | 3.753647e-49 | -8.615850e-47 |
| Msa0801740 | Msa0896760 | 0.812602 | 3.904345e-51 | -8.615850e-47 |
| Msa0169820 | Msa0896760 | 0.815987 | 6.974752e-52 | -8.615850e-47 |
| Msa0175050 | Msa0896760 | 0.806871 | 6.665226e-50 | -8.615850e-47 |
| Msa0178860 | Msa0896760 | -0.810880 | 9.250325e-51 | -8.615850e-47 |
| Msa0183010 | Msa0896760 | -0.815812 | 7.631100e-52 | -8.615850e-47 |
| Msa0230640 | Msa0896760 | -0.817152 | 3.824216e-52 | -8.615850e-47 |
| Msa0389810 | Msa0896760 | 0.819740 | 9.909942e-53 | -8.615850e-47 |
| Msa0482190 | Msa0896760 | -0.822575 | 2.201034e-53 | -8.615850e-47 |
| Msa0271580 | Msa0896760 | 0.825671 | 4.128740e-54 | -8.615850e-47 |
| Msa0271650 | Msa0896760 | 0.828496 | 8.706022e-55 | -8.615850e-47 |
| Msa0485500 | Msa0896760 | -0.821967 | 3.046496e-53 | -8.615850e-47 |
| Msa0526670 | Msa0896760 | -0.802624 | 5.135486e-49 | -8.615850e-47 |
| Msa0532810 | Msa0896760 | -0.813361 | 2.661167e-51 | -8.615850e-47 |
| Msa0574850 | Msa0896760 | 0.816030 | 6.822893e-52 | -8.615850e-47 |
| Msa0896760 | Msa0923320 | 0.891552 | 3.579691e-74 | -8.615850e-47 |
| Msa0896760 | Msa0982270 | 0.819443 | 1.158494e-52 | -8.615850e-47 |
| Msa0896760 | Msa1124540 | -0.812973 | 3.237424e-51 | -8.615850e-47 |
| Msa0896760 | Msa1225730 | -0.814896 | 1.219537e-51 | -8.615850e-47 |
| Msa0896760 | Msa1258380 | -0.824219 | 9.088216e-54 | -8.615850e-47 |
| Msa0896760 | Msa1307740 | 0.810862 | 9.335274e-51 | -8.615850e-47 |
| Msa0896760 | Msa1444250 | -0.831802 | 1.357712e-55 | -8.615850e-47 |
| Msa0896760 | Msa1451620 | -0.804652 | 1.949249e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896760 | MtrunA17_Chr6g0481821 | 92.308 | 754 | 12 | 3 | 1 | 750 | 1 | 712 | 0.0 | 1404 |
| Msa0896760 | MtrunA17_Chr5g0443261 | 68.567 | 719 | 178 | 4 | 34 | 748 | 6 | 680 | 0.0 | 980 |
| Msa0896760 | MtrunA17_Chr3g0109311 | 66.122 | 735 | 200 | 5 | 19 | 748 | 4 | 694 | 0.0 | 962 |
| Msa0896760 | MtrunA17_Chr3g0109321 | 66.712 | 739 | 188 | 6 | 16 | 750 | 6 | 690 | 0.0 | 928 |
| Msa0896760 | MtrunA17_Chr5g0443301 | 67.395 | 595 | 146 | 4 | 158 | 748 | 1 | 551 | 0.0 | 781 |
| Msa0896760 | MtrunA17_Chr7g0224611 | 53.790 | 686 | 261 | 8 | 59 | 735 | 35 | 673 | 0.0 | 746 |
| Msa0896760 | MtrunA17_Chr3g0127441 | 49.930 | 715 | 298 | 9 | 28 | 735 | 2 | 663 | 0.0 | 729 |
| Msa0896760 | MtrunA17_Chr1g0146591 | 48.401 | 719 | 311 | 8 | 31 | 738 | 6 | 675 | 0.0 | 704 |
| Msa0896760 | MtrunA17_Chr1g0146651 | 48.668 | 713 | 298 | 10 | 43 | 738 | 11 | 672 | 0.0 | 702 |
| Msa0896760 | MtrunA17_Chr3g0119981 | 48.739 | 714 | 298 | 11 | 43 | 739 | 11 | 673 | 0.0 | 701 |
| Msa0896760 | MtrunA17_Chr1g0146641 | 47.705 | 719 | 316 | 8 | 31 | 738 | 6 | 675 | 0.0 | 700 |
| Msa0896760 | MtrunA17_Chr1g0146601 | 46.917 | 746 | 344 | 14 | 27 | 739 | 25 | 751 | 0.0 | 695 |
| Msa0896760 | MtrunA17_Chr1g0189011 | 48.170 | 683 | 297 | 8 | 62 | 737 | 47 | 679 | 0.0 | 689 |
| Msa0896760 | MtrunA17_Chr5g0443291 | 72.174 | 115 | 32 | 0 | 34 | 148 | 6 | 120 | 2.01e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896760 | AT1G65730.1 | 67.028 | 737 | 185 | 6 | 18 | 748 | 1 | 685 | 0.0 | 1021 |
| Msa0896760 | AT3G17650.1 | 68.428 | 738 | 172 | 6 | 29 | 748 | 16 | 710 | 0.0 | 988 |
| Msa0896760 | AT3G17650.2 | 68.428 | 738 | 172 | 6 | 29 | 748 | 16 | 710 | 0.0 | 988 |
| Msa0896760 | AT1G48370.1 | 66.976 | 754 | 189 | 6 | 13 | 748 | 9 | 720 | 0.0 | 984 |
| Msa0896760 | AT1G48370.2 | 67.613 | 599 | 144 | 4 | 158 | 748 | 1 | 557 | 0.0 | 799 |
| Msa0896760 | AT3G27020.1 | 54.816 | 706 | 264 | 8 | 38 | 735 | 12 | 670 | 0.0 | 766 |
| Msa0896760 | AT5G41000.1 | 53.275 | 687 | 264 | 8 | 59 | 735 | 28 | 667 | 0.0 | 726 |
| Msa0896760 | AT5G53550.3 | 50.429 | 700 | 286 | 7 | 45 | 736 | 23 | 669 | 0.0 | 725 |
| Msa0896760 | AT5G53550.1 | 50.429 | 700 | 286 | 7 | 45 | 736 | 23 | 669 | 0.0 | 725 |
| Msa0896760 | AT5G53550.6 | 50.429 | 700 | 286 | 7 | 45 | 736 | 23 | 669 | 0.0 | 725 |
| Msa0896760 | AT5G53550.5 | 50.429 | 700 | 286 | 7 | 45 | 736 | 23 | 669 | 0.0 | 725 |
| Msa0896760 | AT5G53550.2 | 50.429 | 700 | 286 | 7 | 45 | 736 | 23 | 669 | 0.0 | 725 |
| Msa0896760 | AT4G24120.1 | 48.977 | 733 | 300 | 10 | 17 | 737 | 2 | 672 | 0.0 | 719 |
| Msa0896760 | AT5G24380.1 | 49.048 | 683 | 294 | 6 | 60 | 735 | 25 | 660 | 0.0 | 699 |
| Msa0896760 | AT5G41000.2 | 51.092 | 687 | 254 | 8 | 59 | 735 | 28 | 642 | 0.0 | 684 |
| Msa0896760 | AT5G53550.4 | 51.439 | 556 | 218 | 5 | 182 | 736 | 3 | 507 | 0.0 | 588 |
| Msa0896760 | AT5G41000.3 | 56.452 | 496 | 207 | 6 | 244 | 735 | 1 | 491 | 0.0 | 576 |
| Msa0896760 | AT5G45450.1 | 66.972 | 218 | 65 | 2 | 532 | 748 | 1 | 212 | 5.82e-99 | 305 |
Find 194 sgRNAs with CRISPR-Local
Find 409 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAGTGCATTGAAAATT+TGG | 0.132892 | 6_1:+87489814 | None:intergenic |
| ACTTGTGTTGTTGCTTCTTC+TGG | 0.151174 | 6_1:-87495209 | Msa0896760:CDS |
| ATGGCAATACCTTTCTATTT+AGG | 0.166528 | 6_1:-87490328 | Msa0896760:CDS |
| TAATGTCTCTGCTGGTCTTT+TGG | 0.168239 | 6_1:-87495324 | Msa0896760:CDS |
| TAATTTCACCTTGTGTCTTT+TGG | 0.182441 | 6_1:-87490576 | Msa0896760:CDS |
| GGTGCTAACTCATACCTTAT+TGG | 0.192771 | 6_1:-87491118 | Msa0896760:CDS |
| CCATTGTTGTTCCGATTATT+TGG | 0.193236 | 6_1:+87490605 | None:intergenic |
| TCCTTGGAGGAGTTCTTTCT+TGG | 0.198308 | 6_1:-87491495 | Msa0896760:CDS |
| GATAGGGTTGATACTTTCTT+AGG | 0.214363 | 6_1:-87490097 | Msa0896760:CDS |
| TCTTAGGAAATTAATTAATT+AGG | 0.217932 | 6_1:-87490081 | Msa0896760:exon |
| CAAAACTTGGACTAAGTTCT+TGG | 0.226417 | 6_1:-87495288 | Msa0896760:CDS |
| GCATGATTTGATTGTCATTT+GGG | 0.227033 | 6_1:-87489879 | Msa0896760:three_prime_UTR |
| TTTGCACCTGCTGTTGCTTC+TGG | 0.245860 | 6_1:-87490223 | Msa0896760:CDS |
| TTGCTTTGCTATATATTCTT+TGG | 0.247612 | 6_1:-87490424 | Msa0896760:CDS |
| GATTGTGGTAAACTTGATTA+AGG | 0.249504 | 6_1:-87490395 | Msa0896760:CDS |
| CCACGCTCCGATTGAGAAAA+TGG | 0.260199 | 6_1:+87490771 | None:intergenic |
| TTCAAGGAATTCAAGGTTAC+AGG | 0.260833 | 6_1:-87491402 | Msa0896760:CDS |
| GGATTTGGAAGTTACCTATT+TGG | 0.261414 | 6_1:-87492912 | Msa0896760:CDS |
| CAGTGGTTACTTTGCTAGTT+TGG | 0.282368 | 6_1:+87492009 | None:intergenic |
| GTATTCTCTTGTCTAGTAAA+AGG | 0.283358 | 6_1:+87495242 | None:intergenic |
| CCTTGGAGGAGTTCTTTCTT+GGG | 0.290700 | 6_1:-87491494 | Msa0896760:CDS |
| CTTGTATGAACAGGAGGATT+TGG | 0.291617 | 6_1:-87492927 | Msa0896760:intron |
| GTGCTAACTCATACCTTATT+GGG | 0.296695 | 6_1:-87491117 | Msa0896760:CDS |
| TGCATGATTTGATTGTCATT+TGG | 0.297920 | 6_1:-87489880 | Msa0896760:three_prime_UTR |
| GTCTTTAGATCCTTAAGATT+TGG | 0.313849 | 6_1:+87495640 | None:intergenic |
| ACATCTTCCCTCAACTAAAA+TGG | 0.319301 | 6_1:-87490900 | Msa0896760:CDS |
| ACTGATATATTAATGATATA+TGG | 0.326302 | 6_1:+87491520 | None:intergenic |
| TCTTATGGGGTTTCTTTCAA+TGG | 0.331499 | 6_1:-87491850 | Msa0896760:CDS |
| GAAGTTTGATATTGTTTGTT+TGG | 0.332768 | 6_1:-87490276 | Msa0896760:CDS |
| TGTCAAGGTCCACAAATGAT+AGG | 0.332824 | 6_1:-87490114 | Msa0896760:CDS |
| CCTACATGGTTTGCAATTAG+TGG | 0.333118 | 6_1:-87490964 | Msa0896760:CDS |
| TGATATGTGGTGATGGAATA+TGG | 0.339780 | 6_1:-87490198 | Msa0896760:CDS |
| ACAAGGATTCGGTTCTTTAC+CGG | 0.361924 | 6_1:-87490458 | Msa0896760:CDS |
| TTTCAAGCCTTCCCTTCATT+AGG | 0.370895 | 6_1:-87491800 | Msa0896760:CDS |
| GGTAAACTTGATTAAGGATT+CGG | 0.378893 | 6_1:-87490389 | Msa0896760:CDS |
| CTTTAAGAAAGAGTTGTTTC+CGG | 0.382437 | 6_1:+87490995 | None:intergenic |
| GCAATTATCCATCCCAACTT+TGG | 0.383583 | 6_1:+87492837 | None:intergenic |
| TTGACTATACAAACCCAATA+AGG | 0.387419 | 6_1:+87491104 | None:intergenic |
| TTTGTACCAATGACCCTCTC+TGG | 0.398473 | 6_1:+87491447 | None:intergenic |
| CTTATGCAAGATTTCAAAAC+CGG | 0.403681 | 6_1:-87490667 | Msa0896760:CDS |
| AAGGATTCGGTTGGTAAGGT+AGG | 0.403845 | 6_1:-87490376 | Msa0896760:CDS |
| ATAATAATGAGCATGAAGAT+AGG | 0.408695 | 6_1:-87495610 | Msa0896760:CDS |
| CTCAGTTGTGCCTCTTAGAA+AGG | 0.409163 | 6_1:-87492781 | Msa0896760:intron |
| TGTAACCTTGAATTCCTTGA+AGG | 0.413896 | 6_1:+87491404 | None:intergenic |
| CATGTTCACTCATACCAAAT+AGG | 0.417530 | 6_1:+87492898 | None:intergenic |
| CACATGTCAATGGCAAAATA+AGG | 0.417542 | 6_1:+87490304 | None:intergenic |
| AAGTTTGATATTGTTTGTTT+GGG | 0.419735 | 6_1:-87490275 | Msa0896760:CDS |
| GTTGCTTCTGGTTTGATATG+TGG | 0.420440 | 6_1:-87490211 | Msa0896760:CDS |
| GGAAATTAATTAATTAGGCT+TGG | 0.421123 | 6_1:-87490076 | Msa0896760:exon |
| GACAAGAACTTCATGCAAAT+AGG | 0.424104 | 6_1:+87490133 | None:intergenic |
| AGCAACCTTCAAGGAATTCA+AGG | 0.431775 | 6_1:-87491409 | Msa0896760:CDS |
| TAGATCCTTAAGATTTGGTT+CGG | 0.435918 | 6_1:+87495645 | None:intergenic |
| GGTCTTAACCCTCCGATTCA+AGG | 0.439010 | 6_1:-87489788 | None:intergenic |
| CAGGAAGCAAGTGAAATTGT+TGG | 0.441495 | 6_1:-87491894 | Msa0896760:CDS |
| ACATGGATCGTGGTGAAGCC+AGG | 0.443249 | 6_1:+87490635 | None:intergenic |
| GATATTGTTTGTTTGGGAAA+AGG | 0.445126 | 6_1:-87490269 | Msa0896760:CDS |
| AAATTCTCATTCCCTTGAAT+CGG | 0.446696 | 6_1:+87489776 | None:intergenic |
| ACTAGTGTCTGAGGATTGAT+TGG | 0.448515 | 6_1:+87492872 | None:intergenic |
| TTCTCAATCGGAGCGTGGGC+TGG | 0.448663 | 6_1:-87490766 | Msa0896760:CDS |
| CAAATAATCGGAACAACAAT+GGG | 0.448813 | 6_1:-87490604 | Msa0896760:CDS |
| TACCGCAACATGGCAATACT+TGG | 0.450255 | 6_1:-87490484 | Msa0896760:CDS |
| TATACAGCTGCTGATGGGTG+TGG | 0.451437 | 6_1:-87491824 | Msa0896760:CDS |
| AGGAAGCAAGTGAAATTGTT+GGG | 0.453448 | 6_1:-87491893 | Msa0896760:CDS |
| AAGTTTCATTTCATAATCCT+TGG | 0.456411 | 6_1:-87495673 | Msa0896760:five_prime_UTR |
| GATGGTACAGATTTCAAGCT+TGG | 0.457975 | 6_1:+87492342 | None:intergenic |
| TAGAAACCAGAGAGGGTCAT+TGG | 0.461241 | 6_1:-87491453 | Msa0896760:CDS |
| ATGCTAAGGTTGGAGCAATC+AGG | 0.465083 | 6_1:+87490857 | None:intergenic |
| GTTAGTACATTGGTGGTCGT+TGG | 0.467908 | 6_1:+87492309 | None:intergenic |
| ATTCTTTGGCGCGGCGATTG+TGG | 0.470507 | 6_1:-87490410 | Msa0896760:CDS |
| AGTATCCGAACCAAATCTTA+AGG | 0.471370 | 6_1:-87495650 | Msa0896760:five_prime_UTR |
| CCTTCACTTAATGTCTCTGC+TGG | 0.473944 | 6_1:-87495332 | Msa0896760:CDS |
| AGCACTTATTAGTACCATCA+TGG | 0.474614 | 6_1:-87495454 | Msa0896760:CDS |
| TTCTACACTTTATATTGGTG+TGG | 0.475325 | 6_1:-87491554 | Msa0896760:CDS |
| TGGTCTATACAACTTTGTTA+AGG | 0.481791 | 6_1:-87491139 | Msa0896760:CDS |
| TGAATTCCTTGAAGGTTGCT+AGG | 0.484410 | 6_1:+87491412 | None:intergenic |
| TATATAGTATAGTTGTACTT+TGG | 0.485185 | 6_1:+87495710 | None:intergenic |
| TACACAATTGCGTAGGGCGC+AGG | 0.485555 | 6_1:+87490505 | None:intergenic |
| AGTATCAACCCTATCATTTG+TGG | 0.485819 | 6_1:+87490105 | None:intergenic |
| ATGTTTGTGAGCCAAATAAT+CGG | 0.487642 | 6_1:-87490616 | Msa0896760:CDS |
| GGAGAGTCTTGATCCGCAAC+AGG | 0.487808 | 6_1:+87491051 | None:intergenic |
| CTTGGAGGAGTTCTTTCTTG+GGG | 0.488944 | 6_1:-87491493 | Msa0896760:CDS |
| AGGATTCGGTTGGTAAGGTA+GGG | 0.489321 | 6_1:-87490375 | Msa0896760:CDS |
| ATACTTGGAGTACAAGGATT+CGG | 0.491748 | 6_1:-87490469 | Msa0896760:CDS |
| ATGAAACTTAATCTTACTAC+TGG | 0.492220 | 6_1:-87495362 | Msa0896760:CDS |
| CCAAATAATCGGAACAACAA+TGG | 0.495641 | 6_1:-87490605 | Msa0896760:CDS |
| AATATATCAGTTCTCCTTGG+AGG | 0.502394 | 6_1:-87491508 | Msa0896760:CDS |
| ATTAATATATCAGTTCTCCT+TGG | 0.503428 | 6_1:-87491511 | Msa0896760:CDS |
| GATTATTTGGCTCACAAACA+TGG | 0.504020 | 6_1:+87490618 | None:intergenic |
| GATTAAGGATTCGGTTGGTA+AGG | 0.506556 | 6_1:-87490380 | Msa0896760:CDS |
| CTTGGTCCTAGCAACCTTCA+AGG | 0.508132 | 6_1:-87491418 | Msa0896760:CDS |
| AGCTTGAAATCTGTACCATC+TGG | 0.508270 | 6_1:-87492339 | Msa0896760:CDS |
| AAAGGTATTGCCATAGCCAT+TGG | 0.509985 | 6_1:+87490337 | None:intergenic |
| CATTCCACTTCCAATGGCTA+TGG | 0.510484 | 6_1:-87490347 | Msa0896760:CDS |
| CTTGAAGGTTGCTAGGACCA+AGG | 0.511896 | 6_1:+87491419 | None:intergenic |
| ATAGCCATAGCCATGATCCT+TGG | 0.513227 | 6_1:-87491165 | Msa0896760:CDS |
| TCTACACTTTATATTGGTGT+GGG | 0.513632 | 6_1:-87491553 | Msa0896760:CDS |
| CATCTGCCCTTCGTTTGTCC+CGG | 0.515709 | 6_1:+87491079 | None:intergenic |
| CAAAGCAAGAGGCAGTTATC+CGG | 0.520774 | 6_1:+87490439 | None:intergenic |
| AAAAGAGCAAGTATTGAAGC+AGG | 0.521563 | 6_1:+87490169 | None:intergenic |
| GTGCTGACTGCATGACTATG+TGG | 0.522898 | 6_1:+87492512 | None:intergenic |
| TGAGCAGTTGCAGTACCGCT+TGG | 0.523247 | 6_1:+87492064 | None:intergenic |
| TTCTCATTCCCTTGAATCGG+AGG | 0.523317 | 6_1:+87489779 | None:intergenic |
| ATTGCCATAGCCATTGGAAG+TGG | 0.525116 | 6_1:+87490343 | None:intergenic |
| AAATAAGGTCCTAAATAGAA+AGG | 0.525642 | 6_1:+87490319 | None:intergenic |
| ACTTCCAACACACATGTCAA+TGG | 0.526506 | 6_1:+87490294 | None:intergenic |
| TTCTTTCTTGGGGAGTAATG+TGG | 0.528506 | 6_1:-87491483 | Msa0896760:CDS |
| TAGACCATCTCCAAGGATCA+TGG | 0.531309 | 6_1:+87491155 | None:intergenic |
| TGGGTTTGTATAGTCAACTC+CGG | 0.531616 | 6_1:-87491098 | Msa0896760:CDS |
| GTCTTAACCCTCCGATTCAA+GGG | 0.535458 | 6_1:-87489787 | None:intergenic |
| ATCTCCAAGGATCATGGCTA+TGG | 0.539270 | 6_1:+87491161 | None:intergenic |
| TGAAGCCAGGGTAAGGTAGC+CGG | 0.539696 | 6_1:+87490648 | None:intergenic |
| ATTGAAAATTTGGTGTTCAG+AGG | 0.539867 | 6_1:+87489824 | None:intergenic |
| TGGTTCTATACAGCTGCTGA+TGG | 0.540404 | 6_1:-87491830 | Msa0896760:CDS |
| CTTAAAATCACTAGTGTCTG+AGG | 0.541585 | 6_1:+87492863 | None:intergenic |
| CGCAATTGTGTACCGCAACA+TGG | 0.541936 | 6_1:-87490494 | Msa0896760:CDS |
| CCCTCTCTGGTTTCTATGAG+AGG | 0.542261 | 6_1:+87491460 | None:intergenic |
| TTTGCTAGTTTGGCTCCTTG+AGG | 0.542951 | 6_1:+87492019 | None:intergenic |
| TATGCTTTGAGTCCTAATGA+AGG | 0.546514 | 6_1:+87491788 | None:intergenic |
| TAGTGGATATGTTGCTATTG+CGG | 0.546634 | 6_1:-87490947 | Msa0896760:CDS |
| TTTGCATGAAGTTCTTGTCA+AGG | 0.546663 | 6_1:-87490129 | Msa0896760:CDS |
| ACTGTTTGATCTTGATCCCA+CGG | 0.549124 | 6_1:+87492481 | None:intergenic |
| ATGGCAATACTTGGAGTACA+AGG | 0.550661 | 6_1:-87490475 | Msa0896760:CDS |
| TTAAGGATCCAAAGTTGGGA+TGG | 0.551545 | 6_1:-87492845 | Msa0896760:CDS |
| CAAAACCGGCTACCTTACCC+TGG | 0.553851 | 6_1:-87490653 | Msa0896760:CDS |
| TAATAATGAGCATGAAGATA+GGG | 0.554096 | 6_1:-87495609 | Msa0896760:CDS |
| ATCGTGGTGAAGCCAGGGTA+AGG | 0.556646 | 6_1:+87490641 | None:intergenic |
| GCGTGGGCTGGTGCATCACA+TGG | 0.556664 | 6_1:-87490754 | Msa0896760:CDS |
| GTTTGGCTCCTTGAGGAGTG+TGG | 0.557065 | 6_1:+87492026 | None:intergenic |
| TCTGGTTTGATATGTGGTGA+TGG | 0.557129 | 6_1:-87490205 | Msa0896760:CDS |
| TGGTCCCTAGCATCAACCTA+TGG | 0.558055 | 6_1:-87490802 | Msa0896760:CDS |
| GCATTGCAAAATGCTAAGGT+TGG | 0.558181 | 6_1:+87490847 | None:intergenic |
| GTCAAGGTCCACAAATGATA+GGG | 0.560228 | 6_1:-87490113 | Msa0896760:CDS |
| CATGATTTGATTGTCATTTG+GGG | 0.561390 | 6_1:-87489878 | Msa0896760:three_prime_UTR |
| AACAGTTTCCACACTCCTCA+AGG | 0.563240 | 6_1:-87492034 | Msa0896760:CDS |
| ATGGTTGTGGACTAACAGAT+TGG | 0.563504 | 6_1:-87490822 | Msa0896760:CDS |
| CCACTAATTGCAAACCATGT+AGG | 0.563777 | 6_1:+87490964 | None:intergenic |
| AACAAAGAGGTTCTAGTACA+AGG | 0.565986 | 6_1:-87495517 | Msa0896760:CDS |
| GGGTTTGTATAGTCAACTCC+GGG | 0.567231 | 6_1:-87491097 | Msa0896760:CDS |
| GAGATTCATTCCACTTCCAA+TGG | 0.567537 | 6_1:-87490353 | Msa0896760:CDS |
| TCACGTTGTTAGTACATTGG+TGG | 0.567665 | 6_1:+87492302 | None:intergenic |
| GGAAAAGGTTGACAAGGCTA+AGG | 0.569505 | 6_1:-87490254 | Msa0896760:CDS |
| GGCAGATGCTCTACCTGTTG+CGG | 0.571689 | 6_1:-87491064 | Msa0896760:CDS |
| GTTAACTGATTCCTCCATGA+TGG | 0.571809 | 6_1:+87495440 | None:intergenic |
| TTTGCCATTGACATGTGTGT+TGG | 0.573547 | 6_1:-87490298 | Msa0896760:CDS |
| AGAATATATAGCAAAGCAAG+AGG | 0.574745 | 6_1:+87490428 | None:intergenic |
| ATCTGTTAGTCCACAACCAT+AGG | 0.575557 | 6_1:+87490825 | None:intergenic |
| GTCAACTCCGGGACAAACGA+AGG | 0.575818 | 6_1:-87491086 | Msa0896760:CDS |
| CATAAATTGTCACAACAAAG+AGG | 0.576106 | 6_1:-87495530 | Msa0896760:CDS |
| CATGGATCGTGGTGAAGCCA+GGG | 0.577970 | 6_1:+87490636 | None:intergenic |
| TTAAAGATCAGATTCCTACA+TGG | 0.584073 | 6_1:-87490978 | Msa0896760:CDS |
| ATAGGCATTGCAAAATGCTA+AGG | 0.584698 | 6_1:+87490843 | None:intergenic |
| GGTTCTATACAGCTGCTGAT+GGG | 0.586315 | 6_1:-87491829 | Msa0896760:CDS |
| GATTTGGTTCGGATACTCCA+AGG | 0.587238 | 6_1:+87495656 | None:intergenic |
| GATGTTCATCATGACTCCGC+AGG | 0.591634 | 6_1:+87490708 | None:intergenic |
| TTTGAGTCCTAATGAAGGGA+AGG | 0.592188 | 6_1:+87491793 | None:intergenic |
| CTTGCTAGTCTTGCAGCCTG+CGG | 0.595048 | 6_1:-87490724 | Msa0896760:CDS |
| AACTTGATTAAGGATTCGGT+TGG | 0.598409 | 6_1:-87490385 | Msa0896760:CDS |
| ACACAATTGCGTAGGGCGCA+GGG | 0.599414 | 6_1:+87490506 | None:intergenic |
| TCTCATTCCCTTGAATCGGA+GGG | 0.600484 | 6_1:+87489780 | None:intergenic |
| TCAAGGAATTCAAGGTTACA+GGG | 0.602818 | 6_1:-87491401 | Msa0896760:intron |
| GTAAGATAACTCAGGACTCG+AGG | 0.605381 | 6_1:+87491029 | None:intergenic |
| GTTGCGGTACACAATTGCGT+AGG | 0.606009 | 6_1:+87490498 | None:intergenic |
| ATGCTTTGAGTCCTAATGAA+GGG | 0.608080 | 6_1:+87491789 | None:intergenic |
| TACAAAGCATTTCCTGACCT+AGG | 0.612341 | 6_1:-87490547 | Msa0896760:CDS |
| ATCAAACCAGAAGCAACAGC+AGG | 0.613290 | 6_1:+87490217 | None:intergenic |
| AAGAACTTCATGCAAATAGG+AGG | 0.617407 | 6_1:+87490136 | None:intergenic |
| TTGCTATATATTCTTTGGCG+CGG | 0.619642 | 6_1:-87490419 | Msa0896760:CDS |
| CTCCAAGTATTGCCATGTTG+CGG | 0.619735 | 6_1:+87490482 | None:intergenic |
| TGCTGACTGCATGACTATGT+GGG | 0.621460 | 6_1:+87492513 | None:intergenic |
| CCCAAGAAAGAACTCCTCCA+AGG | 0.622090 | 6_1:+87491494 | None:intergenic |
| ATAGCCATGATCCTTGGAGA+TGG | 0.623397 | 6_1:-87491159 | Msa0896760:CDS |
| GAAGATAGGGTAGTTGACAA+TGG | 0.624032 | 6_1:-87495596 | Msa0896760:CDS |
| TGTTTGGGAAAAGGTTGACA+AGG | 0.624033 | 6_1:-87490260 | Msa0896760:CDS |
| TTGCGGTACACAATTGCGTA+GGG | 0.624590 | 6_1:+87490499 | None:intergenic |
| GTCGTTGGATCGATACCAGA+TGG | 0.625849 | 6_1:+87492324 | None:intergenic |
| TGATCATCGTAAGATAACTC+AGG | 0.626341 | 6_1:+87491021 | None:intergenic |
| TAAGATAACTCAGGACTCGA+GGG | 0.628178 | 6_1:+87491030 | None:intergenic |
| TTTAGTTGAGGGAAGATGTG+CGG | 0.628491 | 6_1:+87490904 | None:intergenic |
| GTCAGCACAACGGTAACCGT+GGG | 0.636529 | 6_1:-87492497 | Msa0896760:CDS |
| AGTCAGCACAACGGTAACCG+TGG | 0.639351 | 6_1:-87492498 | Msa0896760:CDS |
| TATCTTACGATGATCAGCGC+CGG | 0.641527 | 6_1:-87491014 | Msa0896760:CDS |
| TCAACTCCGGGACAAACGAA+GGG | 0.644762 | 6_1:-87491085 | Msa0896760:CDS |
| CCAGCAGAGACATTAAGTGA+AGG | 0.650274 | 6_1:+87495332 | None:intergenic |
| AGGGAAGATGTGCGGCAATG+TGG | 0.666147 | 6_1:+87490912 | None:intergenic |
| ATCTTAAGGATCTAAAGACA+TGG | 0.673015 | 6_1:-87495636 | Msa0896760:exon |
| AGTTGTATAGACCATCTCCA+AGG | 0.673257 | 6_1:+87491148 | None:intergenic |
| TAGAAAATCCAAAAGACACA+AGG | 0.677007 | 6_1:+87490568 | None:intergenic |
| TTCAAATTAACATATCCAAG+CGG | 0.681654 | 6_1:-87492079 | Msa0896760:CDS |
| TGGCTCACAAACATGGATCG+TGG | 0.685246 | 6_1:+87490625 | None:intergenic |
| TGGGCTGGTGCATCACATGG+TGG | 0.687327 | 6_1:-87490751 | Msa0896760:CDS |
| GCCTCTCATAGAAACCAGAG+AGG | 0.722428 | 6_1:-87491461 | Msa0896760:CDS |
| CCTCTCATAGAAACCAGAGA+GGG | 0.726173 | 6_1:-87491460 | Msa0896760:CDS |
| ACTTATTAGTACCATCATGG+AGG | 0.730761 | 6_1:-87495451 | Msa0896760:CDS |
| TAGTCATGCAGTCAGCACAA+CGG | 0.731668 | 6_1:-87492507 | Msa0896760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTGTAATTAATAGTT+TGG | - | chr6_1:87491452-87491471 | Msa0896760:CDS | 10.0% |
| !! | ATCATAGTTATTAAAAATAT+AGG | - | chr6_1:87492408-87492427 | Msa0896760:intron | 10.0% |
| !! | ATCTAAATTTATTTATTTGT+AGG | - | chr6_1:87493908-87493927 | Msa0896760:intron | 10.0% |
| !! | AAAAAAAAAAATGCTTATCA+TGG | + | chr6_1:87490421-87490440 | None:intergenic | 15.0% |
| !! | ATAATCAAATCATAGTAATA+AGG | + | chr6_1:87490478-87490497 | None:intergenic | 15.0% |
| !!! | TAGTAATTTTGAAAATGATA+AGG | - | chr6_1:87490767-87490786 | Msa0896760:CDS | 15.0% |
| !! | TAATTCTTCAAAGAAAATTA+GGG | - | chr6_1:87490900-87490919 | Msa0896760:CDS | 15.0% |
| !!! | TTAATTTTTCTGAATATGAT+AGG | - | chr6_1:87491365-87491384 | Msa0896760:intron | 15.0% |
| !! | TTAATATATATTGCTATGTA+GGG | + | chr6_1:87491802-87491821 | None:intergenic | 15.0% |
| !! | ATTAATATATATTGCTATGT+AGG | + | chr6_1:87491803-87491822 | None:intergenic | 15.0% |
| !! | ATAGCAATATATATTAATGA+GGG | - | chr6_1:87491805-87491824 | Msa0896760:CDS | 15.0% |
| !! | ACAATTAATTTCATCAAATT+AGG | + | chr6_1:87492546-87492565 | None:intergenic | 15.0% |
| !! | ACTAGAATAATTTGAAAAAA+TGG | + | chr6_1:87493273-87493292 | None:intergenic | 15.0% |
| !! | AATCTATACTTATATAGAAA+TGG | - | chr6_1:87493803-87493822 | Msa0896760:intron | 15.0% |
| !! | TATTTGTCTCATTATAATTT+GGG | - | chr6_1:87493879-87493898 | Msa0896760:intron | 15.0% |
| !! | ACTGATATATTAATGATATA+TGG | + | chr6_1:87493982-87494001 | None:intergenic | 15.0% |
| !!! | TAATTAATCGTACTTTTTTA+AGG | - | chr6_1:87494261-87494280 | Msa0896760:intron | 15.0% |
| !! | TCTTAGGAAATTAATTAATT+AGG | - | chr6_1:87495418-87495437 | Msa0896760:CDS | 15.0% |
| !!! | ATTTGAAATAAAGATGTTTT+AGG | + | chr6_1:87495649-87495668 | None:intergenic | 15.0% |
| !! | TATATAGTATAGTTGTACTT+TGG | + | chr6_1:87489792-87489811 | None:intergenic | 20.0% |
| !! | ATCATGATATCATAGTAAAA+AGG | + | chr6_1:87490378-87490397 | None:intergenic | 20.0% |
| !! | CTAATTCTTCAAAGAAAATT+AGG | - | chr6_1:87490899-87490918 | Msa0896760:CDS | 20.0% |
| !! | ATCTTATGAAAACAGTTAAT+AGG | - | chr6_1:87490987-87491006 | Msa0896760:CDS | 20.0% |
| !!! | AATCTGTATTTTTCAAAGTA+TGG | + | chr6_1:87491261-87491280 | None:intergenic | 20.0% |
| !!! | AGATTTTTCTATATTTTCCA+TGG | - | chr6_1:87491276-87491295 | Msa0896760:intron | 20.0% |
| !!! | ACATAAATTTTCAAAGTTCT+TGG | + | chr6_1:87491313-87491332 | None:intergenic | 20.0% |
| !!! | AAGAACTTTGAAAATTTATG+TGG | - | chr6_1:87491312-87491331 | Msa0896760:intron | 20.0% |
| !! | AAATTAAATACTGTCCAAAT+TGG | + | chr6_1:87491352-87491371 | None:intergenic | 20.0% |
| !!! | AGAGTAGTTTTAATTATTAG+TGG | + | chr6_1:87491433-87491452 | None:intergenic | 20.0% |
| !! | CATAGCAATATATATTAATG+AGG | - | chr6_1:87491804-87491823 | Msa0896760:CDS | 20.0% |
| !!! | TACAAAGTATTGTCAAATAA+TGG | - | chr6_1:87492110-87492129 | Msa0896760:intron | 20.0% |
| !!! | ATATTTTATACCTTTCTAAG+AGG | + | chr6_1:87492731-87492750 | None:intergenic | 20.0% |
| !! | GGGCTAAAAAAAAATTTATT+AGG | + | chr6_1:87492799-87492818 | None:intergenic | 20.0% |
| !! | AAGTAATTTCATATAGGATT+TGG | + | chr6_1:87493250-87493269 | None:intergenic | 20.0% |
| !! | AAATGGAAGTAATTTCATAT+AGG | + | chr6_1:87493256-87493275 | None:intergenic | 20.0% |
| !! | TTATCTACATACATTAACAT+AGG | + | chr6_1:87493389-87493408 | None:intergenic | 20.0% |
| !! | ATGTTAATGTATGTAGATAA+TGG | - | chr6_1:87493389-87493408 | Msa0896760:intron | 20.0% |
| !! | TGAATAAGTTTGATTGAAAA+TGG | + | chr6_1:87493762-87493781 | None:intergenic | 20.0% |
| !! | CTATTTGTCTCATTATAATT+TGG | - | chr6_1:87493878-87493897 | Msa0896760:intron | 20.0% |
| !! | ATTTGTCTCATTATAATTTG+GGG | - | chr6_1:87493880-87493899 | Msa0896760:intron | 20.0% |
| !!! | GATTTTTCTACACTTTATAT+TGG | - | chr6_1:87493940-87493959 | Msa0896760:intron | 20.0% |
| !! | AAGTTTGATATTGTTTGTTT+GGG | - | chr6_1:87495224-87495243 | Msa0896760:CDS | 20.0% |
| !!! | AGAAAAAGTATTGTTTTTGT+TGG | - | chr6_1:87495557-87495576 | Msa0896760:CDS | 20.0% |
| ! | AAGTTTCATTTCATAATCCT+TGG | - | chr6_1:87489826-87489845 | Msa0896760:three_prime_UTR | 25.0% |
| ! | ATAATAATGAGCATGAAGAT+AGG | - | chr6_1:87489889-87489908 | Msa0896760:three_prime_UTR | 25.0% |
| ! | TAATAATGAGCATGAAGATA+GGG | - | chr6_1:87489890-87489909 | Msa0896760:three_prime_UTR | 25.0% |
| ! | ATGAAACTTAATCTTACTAC+TGG | - | chr6_1:87490137-87490156 | Msa0896760:CDS | 25.0% |
| !! | GATTTTTCTTTGTCAAAACT+TGG | - | chr6_1:87490198-87490217 | Msa0896760:CDS | 25.0% |
| ! | ATCACTTGAATTTAATCACT+TGG | - | chr6_1:87490722-87490741 | Msa0896760:CDS | 25.0% |
| !! | TAAGGAATAGTCAAGATTTT+CGG | - | chr6_1:87490785-87490804 | Msa0896760:CDS | 25.0% |
| ! | ATACTTATCTCCAACAAATT+AGG | + | chr6_1:87490837-87490856 | None:intergenic | 25.0% |
| !! | AGATAAGTATTTGAGATAAG+AGG | - | chr6_1:87490847-87490866 | Msa0896760:CDS | 25.0% |
| !! | GATAAGTATTTGAGATAAGA+GGG | - | chr6_1:87490848-87490867 | Msa0896760:CDS | 25.0% |
| !! | ATAAGTATTTGAGATAAGAG+GGG | - | chr6_1:87490849-87490868 | Msa0896760:CDS | 25.0% |
| ! | GTATTTACACTATAAGAACT+TGG | - | chr6_1:87491071-87491090 | Msa0896760:CDS | 25.0% |
| ! | CTGTATTTATTAGTCCAATT+TGG | - | chr6_1:87491335-87491354 | Msa0896760:intron | 25.0% |
| ! | AAGTCAAATTATACTACCTT+TGG | - | chr6_1:87491405-87491424 | Msa0896760:CDS | 25.0% |
| ! | TCTTATCACTTATATGTTTG+TGG | + | chr6_1:87491730-87491749 | None:intergenic | 25.0% |
| ! | TTGAACAGGAAAAAATATCT+TGG | - | chr6_1:87491953-87491972 | Msa0896760:intron | 25.0% |
| ! | GTATTACAAACTGTTTAATC+TGG | - | chr6_1:87491982-87492001 | Msa0896760:intron | 25.0% |
| ! | TTTGATGTTATACATGTGAA+AGG | - | chr6_1:87492464-87492483 | Msa0896760:intron | 25.0% |
| ! | TTTCCAAGATTGAAGAAAAA+GGG | + | chr6_1:87492819-87492838 | None:intergenic | 25.0% |
| !! | TTTTCCAAGATTGAAGAAAA+AGG | + | chr6_1:87492820-87492839 | None:intergenic | 25.0% |
| ! | ATTGAAATCAACCAAGTAAT+TGG | + | chr6_1:87493116-87493135 | None:intergenic | 25.0% |
| ! | ACATAGGCAAAATTTAATCA+AGG | + | chr6_1:87493373-87493392 | None:intergenic | 25.0% |
| ! | TTCAAATTAACATATCCAAG+CGG | - | chr6_1:87493420-87493439 | Msa0896760:intron | 25.0% |
| ! | CTTATAGTAAACTTTGAGTA+TGG | + | chr6_1:87493518-87493537 | None:intergenic | 25.0% |
| !!! | TCTTCAGTTTTAGTTTCTTA+TGG | - | chr6_1:87493634-87493653 | Msa0896760:intron | 25.0% |
| !!! | CTTCAGTTTTAGTTTCTTAT+GGG | - | chr6_1:87493635-87493654 | Msa0896760:intron | 25.0% |
| !!! | TTCAGTTTTAGTTTCTTATG+GGG | - | chr6_1:87493636-87493655 | Msa0896760:intron | 25.0% |
| ! | AGACAAATAGTTTAAACGAA+GGG | + | chr6_1:87493868-87493887 | None:intergenic | 25.0% |
| ! | ATTAATATATCAGTTCTCCT+TGG | - | chr6_1:87493988-87494007 | Msa0896760:intron | 25.0% |
| !!! | TGTAATACCATTTTAGTTGA+GGG | + | chr6_1:87494609-87494628 | None:intergenic | 25.0% |
| !!! | ATGTAATACCATTTTAGTTG+AGG | + | chr6_1:87494610-87494629 | None:intergenic | 25.0% |
| !! | TTGCTTTGCTATATATTCTT+TGG | - | chr6_1:87495075-87495094 | Msa0896760:intron | 25.0% |
| ! | AAATAAGGTCCTAAATAGAA+AGG | + | chr6_1:87495183-87495202 | None:intergenic | 25.0% |
| ! | GAAGTTTGATATTGTTTGTT+TGG | - | chr6_1:87495223-87495242 | Msa0896760:CDS | 25.0% |
| ! | GGAAATTAATTAATTAGGCT+TGG | - | chr6_1:87495423-87495442 | Msa0896760:CDS | 25.0% |
| ! | AACAAAGTGCATTGAAAATT+TGG | + | chr6_1:87495688-87495707 | None:intergenic | 25.0% |
| !!! | TTTTCAATGCACTTTGTTTT+AGG | - | chr6_1:87495690-87495709 | Msa0896760:five_prime_UTR | 25.0% |
| ! | TAGATCCTTAAGATTTGGTT+CGG | + | chr6_1:87489857-87489876 | None:intergenic | 30.0% |
| GTCTTTAGATCCTTAAGATT+TGG | + | chr6_1:87489862-87489881 | None:intergenic | 30.0% | |
| ATCTTAAGGATCTAAAGACA+TGG | - | chr6_1:87489863-87489882 | Msa0896760:three_prime_UTR | 30.0% | |
| CATAAATTGTCACAACAAAG+AGG | - | chr6_1:87489969-87489988 | Msa0896760:three_prime_UTR | 30.0% | |
| GTATTCTCTTGTCTAGTAAA+AGG | + | chr6_1:87490260-87490279 | None:intergenic | 30.0% | |
| ! | TTCTTTTCTCATAAAACAGG+AGG | + | chr6_1:87490593-87490612 | None:intergenic | 30.0% |
| ! | CAGTTCTTTTCTCATAAAAC+AGG | + | chr6_1:87490596-87490615 | None:intergenic | 30.0% |
| AGAAAAGAACTGTTGTATTC+TGG | - | chr6_1:87490604-87490623 | Msa0896760:CDS | 30.0% | |
| ! | TCTACAGTATCCTAATTTGT+TGG | - | chr6_1:87490824-87490843 | Msa0896760:CDS | 30.0% |
| AAAGAAAATTAGGGCATGTT+TGG | - | chr6_1:87490909-87490928 | Msa0896760:CDS | 30.0% | |
| TAGTCAAATATGTACTACTG+TGG | - | chr6_1:87491117-87491136 | Msa0896760:CDS | 30.0% | |
| GTTATCATTATTTCACTGTC+TGG | - | chr6_1:87491177-87491196 | Msa0896760:intron | 30.0% | |
| !!! | TTTTTCCTGTTTCTATTCCA+AGG | + | chr6_1:87491213-87491232 | None:intergenic | 30.0% |
| TTAATTATTAGTGGCTCCAA+AGG | + | chr6_1:87491424-87491443 | None:intergenic | 30.0% | |
| ATGTATGATGTAACCCATTT+GGG | - | chr6_1:87491476-87491495 | Msa0896760:CDS | 30.0% | |
| TCAAATTAGTCCACCAAAAT+TGG | + | chr6_1:87491585-87491604 | None:intergenic | 30.0% | |
| TAGAGAAGAAAAAATCGTTG+TGG | + | chr6_1:87491691-87491710 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCTCTACGTATCT+CGG | - | chr6_1:87491698-87491717 | Msa0896760:intron | 30.0% |
| !! | GGATTTATTTTCAGTGGAAA+TGG | + | chr6_1:87491924-87491943 | None:intergenic | 30.0% |
| TTGTCAAATAATGGCTATAG+TGG | - | chr6_1:87492119-87492138 | Msa0896760:intron | 30.0% | |
| ! | TCCTAAGTACTGTCAAATAA+TGG | - | chr6_1:87492307-87492326 | Msa0896760:intron | 30.0% |
| !! | TGATTTTAAGGATCCAAAGT+TGG | - | chr6_1:87492649-87492668 | Msa0896760:intron | 30.0% |
| !! | GATTTTAAGGATCCAAAGTT+GGG | - | chr6_1:87492650-87492669 | Msa0896760:intron | 30.0% |
| !!! | TCTCTTTGTTGTTAGCTTTT+TGG | - | chr6_1:87492688-87492707 | Msa0896760:intron | 30.0% |
| !!! | CTCTTTGTTGTTAGCTTTTT+GGG | - | chr6_1:87492689-87492708 | Msa0896760:intron | 30.0% |
| AATCCAATAATCACATGTGT+CGG | + | chr6_1:87492944-87492963 | None:intergenic | 30.0% | |
| ACACATGTGATTATTGGATT+TGG | - | chr6_1:87492944-87492963 | Msa0896760:intron | 30.0% | |
| GAGACAAATAGTTTAAACGA+AGG | + | chr6_1:87493869-87493888 | None:intergenic | 30.0% | |
| TTCTACACTTTATATTGGTG+TGG | - | chr6_1:87493945-87493964 | Msa0896760:intron | 30.0% | |
| TCTACACTTTATATTGGTGT+GGG | - | chr6_1:87493946-87493965 | Msa0896760:intron | 30.0% | |
| GATTAATTACATTCAGTGGA+TGG | + | chr6_1:87494250-87494269 | None:intergenic | 30.0% | |
| GTACGATTAATTACATTCAG+TGG | + | chr6_1:87494254-87494273 | None:intergenic | 30.0% | |
| GTAAGGTGAAGCAAATTAAA+GGG | + | chr6_1:87494291-87494310 | None:intergenic | 30.0% | |
| TGTAAGGTGAAGCAAATTAA+AGG | + | chr6_1:87494292-87494311 | None:intergenic | 30.0% | |
| TGGTCTATACAACTTTGTTA+AGG | - | chr6_1:87494360-87494379 | Msa0896760:intron | 30.0% | |
| TTGACTATACAAACCCAATA+AGG | + | chr6_1:87494398-87494417 | None:intergenic | 30.0% | |
| ! | CTTTAAGAAAGAGTTGTTTC+CGG | + | chr6_1:87494507-87494526 | None:intergenic | 30.0% |
| TTAAAGATCAGATTCCTACA+TGG | - | chr6_1:87494521-87494540 | Msa0896760:intron | 30.0% | |
| !! | AAACTAGCCATTTTCTCAAT+CGG | - | chr6_1:87494721-87494740 | Msa0896760:intron | 30.0% |
| CTTATGCAAGATTTCAAAAC+CGG | - | chr6_1:87494832-87494851 | Msa0896760:intron | 30.0% | |
| ATGTTTGTGAGCCAAATAAT+CGG | - | chr6_1:87494883-87494902 | Msa0896760:intron | 30.0% | |
| CAAATAATCGGAACAACAAT+GGG | - | chr6_1:87494895-87494914 | Msa0896760:intron | 30.0% | |
| ! | TAATTTCACCTTGTGTCTTT+TGG | - | chr6_1:87494923-87494942 | Msa0896760:intron | 30.0% |
| TAGAAAATCCAAAAGACACA+AGG | + | chr6_1:87494934-87494953 | None:intergenic | 30.0% | |
| !! | ATTGACTTTTATGTGTTCCT+AGG | + | chr6_1:87494972-87494991 | None:intergenic | 30.0% |
| AGAATATATAGCAAAGCAAG+AGG | + | chr6_1:87495074-87495093 | None:intergenic | 30.0% | |
| GATTGTGGTAAACTTGATTA+AGG | - | chr6_1:87495104-87495123 | Msa0896760:intron | 30.0% | |
| GGTAAACTTGATTAAGGATT+CGG | - | chr6_1:87495110-87495129 | Msa0896760:intron | 30.0% | |
| ATGGCAATACCTTTCTATTT+AGG | - | chr6_1:87495171-87495190 | Msa0896760:intron | 30.0% | |
| GATATTGTTTGTTTGGGAAA+AGG | - | chr6_1:87495230-87495249 | Msa0896760:CDS | 30.0% | |
| TGCATGATTTGATTGTCATT+TGG | - | chr6_1:87495619-87495638 | Msa0896760:CDS | 30.0% | |
| ! | GCATGATTTGATTGTCATTT+GGG | - | chr6_1:87495620-87495639 | Msa0896760:CDS | 30.0% |
| ! | CATGATTTGATTGTCATTTG+GGG | - | chr6_1:87495621-87495640 | Msa0896760:exon | 30.0% |
| !! | ATTGAAAATTTGGTGTTCAG+AGG | + | chr6_1:87495678-87495697 | None:intergenic | 30.0% |
| AGTATCCGAACCAAATCTTA+AGG | - | chr6_1:87489849-87489868 | Msa0896760:three_prime_UTR | 35.0% | |
| !!! | AGTTGACAATGGTTTTGAGT+TGG | - | chr6_1:87489914-87489933 | Msa0896760:three_prime_UTR | 35.0% |
| ! | AACAAAGAGGTTCTAGTACA+AGG | - | chr6_1:87489982-87490001 | Msa0896760:three_prime_UTR | 35.0% |
| AGCACTTATTAGTACCATCA+TGG | - | chr6_1:87490045-87490064 | Msa0896760:three_prime_UTR | 35.0% | |
| ACTTATTAGTACCATCATGG+AGG | - | chr6_1:87490048-87490067 | Msa0896760:three_prime_UTR | 35.0% | |
| CAAAACTTGGACTAAGTTCT+TGG | - | chr6_1:87490211-87490230 | Msa0896760:CDS | 35.0% | |
| !!! | TCTTCTGGAATTGCTTTTAG+TGG | - | chr6_1:87490305-87490324 | Msa0896760:CDS | 35.0% |
| ! | TTTTGACCGTAAGTAAAGTC+TGG | - | chr6_1:87490628-87490647 | Msa0896760:CDS | 35.0% |
| CATTGACCAGACTTTACTTA+CGG | + | chr6_1:87490637-87490656 | None:intergenic | 35.0% | |
| TTTCTGTCAGGATTAGAACT+CGG | - | chr6_1:87490661-87490680 | Msa0896760:CDS | 35.0% | |
| ! | GGTTGTCTCGAAGTATTTAT+CGG | - | chr6_1:87490683-87490702 | Msa0896760:CDS | 35.0% |
| AAATTAGGGCATGTTTGGAT+TGG | - | chr6_1:87490914-87490933 | Msa0896760:CDS | 35.0% | |
| GTAGTACATATTTGACTAGC+TGG | + | chr6_1:87491115-87491134 | None:intergenic | 35.0% | |
| ! | TGTCTGGAATATATGAACCT+TGG | - | chr6_1:87491193-87491212 | Msa0896760:intron | 35.0% |
| ATGAACCTTGGAATAGAAAC+AGG | - | chr6_1:87491205-87491224 | Msa0896760:intron | 35.0% | |
| CTGAATATGATAGGAGTAGA+AGG | - | chr6_1:87491374-87491393 | Msa0896760:intron | 35.0% | |
| CATGTATGATGTAACCCATT+TGG | - | chr6_1:87491475-87491494 | Msa0896760:CDS | 35.0% | |
| AATCGAACTAAGACCTAAAG+AGG | + | chr6_1:87491552-87491571 | None:intergenic | 35.0% | |
| AGAAGAAAAAATCGTTGTGG+CGG | + | chr6_1:87491688-87491707 | None:intergenic | 35.0% | |
| TGGAAACAAATTCCCTCATA+AGG | + | chr6_1:87491904-87491923 | None:intergenic | 35.0% | |
| TCCACTGAAAATAAATCCTG+TGG | - | chr6_1:87491926-87491945 | Msa0896760:intron | 35.0% | |
| !! | TCCACAGGATTTATTTTCAG+TGG | + | chr6_1:87491930-87491949 | None:intergenic | 35.0% |
| ! | CTATTTGACAACACTGACTA+TGG | + | chr6_1:87492021-87492040 | None:intergenic | 35.0% |
| TAGTCAGTGTTGTCAAATAG+CGG | - | chr6_1:87492021-87492040 | Msa0896760:CDS | 35.0% | |
| GCCATTATTTGACAGTACTT+AGG | + | chr6_1:87492311-87492330 | None:intergenic | 35.0% | |
| ATGATCAATGTTGTCAATCG+CGG | + | chr6_1:87492393-87492412 | None:intergenic | 35.0% | |
| TGTGATTCACTTGTATGAAC+AGG | - | chr6_1:87492563-87492582 | Msa0896760:intron | 35.0% | |
| GGATTTGGAAGTTACCTATT+TGG | - | chr6_1:87492587-87492606 | Msa0896760:intron | 35.0% | |
| CATGTTCACTCATACCAAAT+AGG | + | chr6_1:87492604-87492623 | None:intergenic | 35.0% | |
| CTTAAAATCACTAGTGTCTG+AGG | + | chr6_1:87492639-87492658 | None:intergenic | 35.0% | |
| ! | CTCAGACACTAGTGATTTTA+AGG | - | chr6_1:87492637-87492656 | Msa0896760:intron | 35.0% |
| ! | TAGCCCTTTTTCTTCAATCT+TGG | - | chr6_1:87492813-87492832 | Msa0896760:CDS | 35.0% |
| TAGTCACGTTGTTAGTACAT+TGG | + | chr6_1:87493203-87493222 | None:intergenic | 35.0% | |
| AAACTTTGAGTATGGTACAG+TGG | + | chr6_1:87493510-87493529 | None:intergenic | 35.0% | |
| !! | TTTTCCTTGTCTACTTTTCC+AGG | - | chr6_1:87493586-87493605 | Msa0896760:intron | 35.0% |
| AGGAAGCAAGTGAAATTGTT+GGG | - | chr6_1:87493606-87493625 | Msa0896760:intron | 35.0% | |
| TCTTATGGGGTTTCTTTCAA+TGG | - | chr6_1:87493649-87493668 | Msa0896760:intron | 35.0% | |
| ! | ATGCTTTGAGTCCTAATGAA+GGG | + | chr6_1:87493713-87493732 | None:intergenic | 35.0% |
| ! | TATGCTTTGAGTCCTAATGA+AGG | + | chr6_1:87493714-87493733 | None:intergenic | 35.0% |
| AATATATCAGTTCTCCTTGG+AGG | - | chr6_1:87493991-87494010 | Msa0896760:intron | 35.0% | |
| TGTAACCTTGAATTCCTTGA+AGG | + | chr6_1:87494098-87494117 | None:intergenic | 35.0% | |
| TTCAAGGAATTCAAGGTTAC+AGG | - | chr6_1:87494097-87494116 | Msa0896760:intron | 35.0% | |
| TCAAGGAATTCAAGGTTACA+GGG | - | chr6_1:87494098-87494117 | Msa0896760:intron | 35.0% | |
| TGTGTTCAAATATGCAGTAG+AGG | + | chr6_1:87494152-87494171 | None:intergenic | 35.0% | |
| AAATCGTGCTTGACTGTATT+CGG | - | chr6_1:87494175-87494194 | Msa0896760:intron | 35.0% | |
| TAAATACCTGCAGAACTCAA+TGG | + | chr6_1:87494315-87494334 | None:intergenic | 35.0% | |
| GTGCTAACTCATACCTTATT+GGG | - | chr6_1:87494382-87494401 | Msa0896760:intron | 35.0% | |
| TGATCATCGTAAGATAACTC+AGG | + | chr6_1:87494481-87494500 | None:intergenic | 35.0% | |
| ! | TAGTGGATATGTTGCTATTG+CGG | - | chr6_1:87494552-87494571 | Msa0896760:intron | 35.0% |
| ACATCTTCCCTCAACTAAAA+TGG | - | chr6_1:87494599-87494618 | Msa0896760:intron | 35.0% | |
| ! | ATAGGCATTGCAAAATGCTA+AGG | + | chr6_1:87494659-87494678 | None:intergenic | 35.0% |
| ! | TTAGCATTTTGCAATGCCTA+TGG | - | chr6_1:87494658-87494677 | Msa0896760:intron | 35.0% |
| !!! | TTTTCCATAGGTTGATGCTA+GGG | + | chr6_1:87494704-87494723 | None:intergenic | 35.0% |
| !!! | GAAAATGGCTAGTTTTCCAT+AGG | + | chr6_1:87494716-87494735 | None:intergenic | 35.0% |
| ! | GATTATTTGGCTCACAAACA+TGG | + | chr6_1:87494884-87494903 | None:intergenic | 35.0% |
| ! | CCATTGTTGTTCCGATTATT+TGG | + | chr6_1:87494897-87494916 | None:intergenic | 35.0% |
| CCAAATAATCGGAACAACAA+TGG | - | chr6_1:87494894-87494913 | Msa0896760:intron | 35.0% | |
| ATACTTGGAGTACAAGGATT+CGG | - | chr6_1:87495030-87495049 | Msa0896760:intron | 35.0% | |
| TTGCTATATATTCTTTGGCG+CGG | - | chr6_1:87495080-87495099 | Msa0896760:intron | 35.0% | |
| ! | AACTTGATTAAGGATTCGGT+TGG | - | chr6_1:87495114-87495133 | Msa0896760:intron | 35.0% |
| CACATGTCAATGGCAAAATA+AGG | + | chr6_1:87495198-87495217 | None:intergenic | 35.0% | |
| !! | TGATATGTGGTGATGGAATA+TGG | - | chr6_1:87495301-87495320 | Msa0896760:CDS | 35.0% |
| !! | AAAAGAGCAAGTATTGAAGC+AGG | + | chr6_1:87495333-87495352 | None:intergenic | 35.0% |
| ! | GCTTCAATACTTGCTCTTTT+TGG | - | chr6_1:87495333-87495352 | Msa0896760:CDS | 35.0% |
| AAGAACTTCATGCAAATAGG+AGG | + | chr6_1:87495366-87495385 | None:intergenic | 35.0% | |
| GACAAGAACTTCATGCAAAT+AGG | + | chr6_1:87495369-87495388 | None:intergenic | 35.0% | |
| TTTGCATGAAGTTCTTGTCA+AGG | - | chr6_1:87495370-87495389 | Msa0896760:CDS | 35.0% | |
| AGTATCAACCCTATCATTTG+TGG | + | chr6_1:87495397-87495416 | None:intergenic | 35.0% | |
| !! | GATAGGGTTGATACTTTCTT+AGG | - | chr6_1:87495402-87495421 | Msa0896760:CDS | 35.0% |
| GAAGATAGGGTAGTTGACAA+TGG | - | chr6_1:87489903-87489922 | Msa0896760:three_prime_UTR | 40.0% | |
| ! | GTTAACTGATTCCTCCATGA+TGG | + | chr6_1:87490062-87490081 | None:intergenic | 40.0% |
| !!! | TAATGTCTCTGCTGGTCTTT+TGG | - | chr6_1:87490175-87490194 | Msa0896760:CDS | 40.0% |
| !!! | AATGTCTCTGCTGGTCTTTT+GGG | - | chr6_1:87490176-87490195 | Msa0896760:CDS | 40.0% |
| ! | ACTTGTGTTGTTGCTTCTTC+TGG | - | chr6_1:87490290-87490309 | Msa0896760:CDS | 40.0% |
| !! | GGTCAATGATTGTTTCTGTC+AGG | - | chr6_1:87490649-87490668 | Msa0896760:CDS | 40.0% |
| TTCTGTCAGGATTAGAACTC+GGG | - | chr6_1:87490662-87490681 | Msa0896760:CDS | 40.0% | |
| TCTTGGTATAAGCTGAACCA+TGG | + | chr6_1:87491296-87491315 | None:intergenic | 40.0% | |
| AACTAAGACCTAAAGAGGAG+CGG | + | chr6_1:87491547-87491566 | None:intergenic | 40.0% | |
| ATTGCTATGTAGGGCTATGA+GGG | + | chr6_1:87491793-87491812 | None:intergenic | 40.0% | |
| TATTGCTATGTAGGGCTATG+AGG | + | chr6_1:87491794-87491813 | None:intergenic | 40.0% | |
| ! | GTGTTGCTGTAATCATCTTG+AGG | - | chr6_1:87491827-87491846 | Msa0896760:CDS | 40.0% |
| TTGCTGTAATCATCTTGAGG+AGG | - | chr6_1:87491830-87491849 | Msa0896760:CDS | 40.0% | |
| AAATTCCCTCATAAGGCAAC+CGG | + | chr6_1:87491897-87491916 | None:intergenic | 40.0% | |
| TAGCGACGCAATATCAATCT+AGG | - | chr6_1:87492047-87492066 | Msa0896760:CDS | 40.0% | |
| AGCGACGCAATATCAATCTA+GGG | - | chr6_1:87492048-87492067 | Msa0896760:CDS | 40.0% | |
| ! | CAATCTAGGGTAGCAGAATT+TGG | - | chr6_1:87492061-87492080 | Msa0896760:CDS | 40.0% |
| CAAAGCATGTAGCGAAACAA+TGG | + | chr6_1:87492087-87492106 | None:intergenic | 40.0% | |
| GCAATAGCACTCTAGTATAG+CGG | - | chr6_1:87492339-87492358 | Msa0896760:CDS | 40.0% | |
| GATTCACTTGTATGAACAGG+AGG | - | chr6_1:87492566-87492585 | Msa0896760:intron | 40.0% | |
| CTTGTATGAACAGGAGGATT+TGG | - | chr6_1:87492572-87492591 | Msa0896760:intron | 40.0% | |
| ACTAGTGTCTGAGGATTGAT+TGG | + | chr6_1:87492630-87492649 | None:intergenic | 40.0% | |
| TTAAGGATCCAAAGTTGGGA+TGG | - | chr6_1:87492654-87492673 | Msa0896760:intron | 40.0% | |
| GCAATTATCCATCCCAACTT+TGG | + | chr6_1:87492665-87492684 | None:intergenic | 40.0% | |
| TGTCTGAAAGCAATACGTGT+TGG | + | chr6_1:87492908-87492927 | None:intergenic | 40.0% | |
| ACACCGACACATGTGATTAT+TGG | - | chr6_1:87492938-87492957 | Msa0896760:intron | 40.0% | |
| ACTGTTTGATCTTGATCCCA+CGG | + | chr6_1:87493021-87493040 | None:intergenic | 40.0% | |
| ! | TTTTGCAAGTGTTAACCCTC+CGG | - | chr6_1:87493060-87493079 | Msa0896760:intron | 40.0% |
| ACCACTTGAGTCCAATTACT+TGG | - | chr6_1:87493102-87493121 | Msa0896760:intron | 40.0% | |
| ACCAAGTAATTGGACTCAAG+TGG | + | chr6_1:87493106-87493125 | None:intergenic | 40.0% | |
| GATGGTACAGATTTCAAGCT+TGG | + | chr6_1:87493160-87493179 | None:intergenic | 40.0% | |
| AGCTTGAAATCTGTACCATC+TGG | - | chr6_1:87493160-87493179 | Msa0896760:intron | 40.0% | |
| TCACGTTGTTAGTACATTGG+TGG | + | chr6_1:87493200-87493219 | None:intergenic | 40.0% | |
| GTACTAACAACGTGACTATG+TGG | - | chr6_1:87493205-87493224 | Msa0896760:intron | 40.0% | |
| TAACAACGTGACTATGTGGA+TGG | - | chr6_1:87493209-87493228 | Msa0896760:intron | 40.0% | |
| CATCGACACATACACGAATA+CGG | + | chr6_1:87493317-87493336 | None:intergenic | 40.0% | |
| ! | CAGTGGTTACTTTGCTAGTT+TGG | + | chr6_1:87493493-87493512 | None:intergenic | 40.0% |
| CAACAATTTCACTTGCTTCC+TGG | + | chr6_1:87493607-87493626 | None:intergenic | 40.0% | |
| CAGGAAGCAAGTGAAATTGT+TGG | - | chr6_1:87493605-87493624 | Msa0896760:intron | 40.0% | |
| TTTCAAGCCTTCCCTTCATT+AGG | - | chr6_1:87493699-87493718 | Msa0896760:intron | 40.0% | |
| TTTGAGTCCTAATGAAGGGA+AGG | + | chr6_1:87493709-87493728 | None:intergenic | 40.0% | |
| TTCTTTCTTGGGGAGTAATG+TGG | - | chr6_1:87494016-87494035 | Msa0896760:intron | 40.0% | |
| GAGGGTCATTGGTACAAAAA+AGG | - | chr6_1:87494057-87494076 | Msa0896760:intron | 40.0% | |
| CATTGGTACAAAAAAGGCCT+TGG | - | chr6_1:87494063-87494082 | Msa0896760:intron | 40.0% | |
| TGAATTCCTTGAAGGTTGCT+AGG | + | chr6_1:87494090-87494109 | None:intergenic | 40.0% | |
| AGCAACCTTCAAGGAATTCA+AGG | - | chr6_1:87494090-87494109 | Msa0896760:intron | 40.0% | |
| AGTTGTATAGACCATCTCCA+AGG | + | chr6_1:87494354-87494373 | None:intergenic | 40.0% | |
| GGTGCTAACTCATACCTTAT+TGG | - | chr6_1:87494381-87494400 | Msa0896760:intron | 40.0% | |
| TGGGTTTGTATAGTCAACTC+CGG | - | chr6_1:87494401-87494420 | Msa0896760:intron | 40.0% | |
| TAAGATAACTCAGGACTCGA+GGG | + | chr6_1:87494472-87494491 | None:intergenic | 40.0% | |
| CCACTAATTGCAAACCATGT+AGG | + | chr6_1:87494538-87494557 | None:intergenic | 40.0% | |
| ! | CCTACATGGTTTGCAATTAG+TGG | - | chr6_1:87494535-87494554 | Msa0896760:intron | 40.0% |
| TTTAGTTGAGGGAAGATGTG+CGG | + | chr6_1:87494598-87494617 | None:intergenic | 40.0% | |
| GCATTGCAAAATGCTAAGGT+TGG | + | chr6_1:87494655-87494674 | None:intergenic | 40.0% | |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr6_1:87494664-87494683 | Msa0896760:intron | 40.0% |
| ATCTGTTAGTCCACAACCAT+AGG | + | chr6_1:87494677-87494696 | None:intergenic | 40.0% | |
| ! | ATGGTTGTGGACTAACAGAT+TGG | - | chr6_1:87494677-87494696 | Msa0896760:intron | 40.0% |
| !!! | GTTTTCCATAGGTTGATGCT+AGG | + | chr6_1:87494705-87494724 | None:intergenic | 40.0% |
| ! | TACAAAGCATTTCCTGACCT+AGG | - | chr6_1:87494952-87494971 | Msa0896760:intron | 40.0% |
| ! | CTTTTATGTGTTCCTAGGTC+AGG | + | chr6_1:87494967-87494986 | None:intergenic | 40.0% |
| ATGGCAATACTTGGAGTACA+AGG | - | chr6_1:87495024-87495043 | Msa0896760:intron | 40.0% | |
| ! | ACAAGGATTCGGTTCTTTAC+CGG | - | chr6_1:87495041-87495060 | Msa0896760:intron | 40.0% |
| ! | GATTAAGGATTCGGTTGGTA+AGG | - | chr6_1:87495119-87495138 | Msa0896760:intron | 40.0% |
| GAGATTCATTCCACTTCCAA+TGG | - | chr6_1:87495146-87495165 | Msa0896760:intron | 40.0% | |
| !! | AAAGGTATTGCCATAGCCAT+TGG | + | chr6_1:87495165-87495184 | None:intergenic | 40.0% |
| TTTGCCATTGACATGTGTGT+TGG | - | chr6_1:87495201-87495220 | Msa0896760:CDS | 40.0% | |
| ACTTCCAACACACATGTCAA+TGG | + | chr6_1:87495208-87495227 | None:intergenic | 40.0% | |
| TGTTTGGGAAAAGGTTGACA+AGG | - | chr6_1:87495239-87495258 | Msa0896760:CDS | 40.0% | |
| !! | GTTGCTTCTGGTTTGATATG+TGG | - | chr6_1:87495288-87495307 | Msa0896760:CDS | 40.0% |
| ! | TCTGGTTTGATATGTGGTGA+TGG | - | chr6_1:87495294-87495313 | Msa0896760:CDS | 40.0% |
| TGTCAAGGTCCACAAATGAT+AGG | - | chr6_1:87495385-87495404 | Msa0896760:CDS | 40.0% | |
| GTCAAGGTCCACAAATGATA+GGG | - | chr6_1:87495386-87495405 | Msa0896760:CDS | 40.0% | |
| !! | GATTTGGTTCGGATACTCCA+AGG | + | chr6_1:87489846-87489865 | None:intergenic | 45.0% |
| CCAGCAGAGACATTAAGTGA+AGG | + | chr6_1:87490170-87490189 | None:intergenic | 45.0% | |
| CCTTCACTTAATGTCTCTGC+TGG | - | chr6_1:87490167-87490186 | Msa0896760:CDS | 45.0% | |
| ! | GAGGGGTTTAGTGTTGAACT+TGG | - | chr6_1:87490866-87490885 | Msa0896760:CDS | 45.0% |
| !! | GTAACCCATTTGGGTTGATC+CGG | - | chr6_1:87491485-87491504 | Msa0896760:CDS | 45.0% |
| ACAACCGGATCAACCCAAAT+GGG | + | chr6_1:87491492-87491511 | None:intergenic | 45.0% | |
| !! | ATTCTCCGTGGTGCCAATTT+TGG | - | chr6_1:87491569-87491588 | Msa0896760:CDS | 45.0% |
| TTCTTCTCTACGTATCTCGG+CGG | - | chr6_1:87491701-87491720 | Msa0896760:intron | 45.0% | |
| TGGGTCAAGACATTGGGTTT+AGG | + | chr6_1:87491755-87491774 | None:intergenic | 45.0% | |
| ! | CTAGGTTGGGTCAAGACATT+GGG | + | chr6_1:87491761-87491780 | None:intergenic | 45.0% |
| ! | ACTAGGTTGGGTCAAGACAT+TGG | + | chr6_1:87491762-87491781 | None:intergenic | 45.0% |
| TTGCTATGTAGGGCTATGAG+GGG | + | chr6_1:87491792-87491811 | None:intergenic | 45.0% | |
| CTGTAATCATCTTGAGGAGG+AGG | - | chr6_1:87491833-87491852 | Msa0896760:CDS | 45.0% | |
| TTGGTATCACATATCTGCCC+CGG | - | chr6_1:87491875-87491894 | Msa0896760:CDS | 45.0% | |
| AATTCCCTCATAAGGCAACC+GGG | + | chr6_1:87491896-87491915 | None:intergenic | 45.0% | |
| !! | AATCCTGTGGAGCTTTGAAC+AGG | - | chr6_1:87491939-87491958 | Msa0896760:intron | 45.0% |
| TTTCCTGTTCAAAGCTCCAC+AGG | + | chr6_1:87491945-87491964 | None:intergenic | 45.0% | |
| ! | ATGTTGTCAATCGCGGATTG+AGG | + | chr6_1:87492386-87492405 | None:intergenic | 45.0% |
| CTCAGTTGTGCCTCTTAGAA+AGG | - | chr6_1:87492718-87492737 | Msa0896760:intron | 45.0% | |
| GCGCATTCAATCGGAAATGT+CGG | + | chr6_1:87492876-87492895 | None:intergenic | 45.0% | |
| ! | TATGTGGGATTACTGACTGC+AGG | + | chr6_1:87492974-87492993 | None:intergenic | 45.0% |
| ! | TGCTGACTGCATGACTATGT+GGG | + | chr6_1:87492989-87493008 | None:intergenic | 45.0% |
| TAGTCATGCAGTCAGCACAA+CGG | - | chr6_1:87492992-87493011 | Msa0896760:intron | 45.0% | |
| TAATGAGCTCCACCAATGAC+CGG | + | chr6_1:87493082-87493101 | None:intergenic | 45.0% | |
| ! | GTTAGTACATTGGTGGTCGT+TGG | + | chr6_1:87493193-87493212 | None:intergenic | 45.0% |
| AACAGTTTCCACACTCCTCA+AGG | - | chr6_1:87493465-87493484 | Msa0896760:intron | 45.0% | |
| ! | TTTGCTAGTTTGGCTCCTTG+AGG | + | chr6_1:87493483-87493502 | None:intergenic | 45.0% |
| GCTTCCTGGAAAAGTAGACA+AGG | + | chr6_1:87493593-87493612 | None:intergenic | 45.0% | |
| ! | TGGTTCTATACAGCTGCTGA+TGG | - | chr6_1:87493669-87493688 | Msa0896760:intron | 45.0% |
| GGTTCTATACAGCTGCTGAT+GGG | - | chr6_1:87493670-87493689 | Msa0896760:intron | 45.0% | |
| TCCTTGGAGGAGTTCTTTCT+TGG | - | chr6_1:87494004-87494023 | Msa0896760:intron | 45.0% | |
| CCTTGGAGGAGTTCTTTCTT+GGG | - | chr6_1:87494005-87494024 | Msa0896760:intron | 45.0% | |
| CTTGGAGGAGTTCTTTCTTG+GGG | - | chr6_1:87494006-87494025 | Msa0896760:intron | 45.0% | |
| CCTCTCATAGAAACCAGAGA+GGG | - | chr6_1:87494039-87494058 | Msa0896760:intron | 45.0% | |
| TAGAAACCAGAGAGGGTCAT+TGG | - | chr6_1:87494046-87494065 | Msa0896760:intron | 45.0% | |
| TTTGTACCAATGACCCTCTC+TGG | + | chr6_1:87494055-87494074 | None:intergenic | 45.0% | |
| CTGCAGAACTCAATGGTGTA+AGG | + | chr6_1:87494308-87494327 | None:intergenic | 45.0% | |
| CTTACACCATTGAGTTCTGC+AGG | - | chr6_1:87494306-87494325 | Msa0896760:intron | 45.0% | |
| ATAGCCATAGCCATGATCCT+TGG | - | chr6_1:87494334-87494353 | Msa0896760:intron | 45.0% | |
| ATCTCCAAGGATCATGGCTA+TGG | + | chr6_1:87494341-87494360 | None:intergenic | 45.0% | |
| ATAGCCATGATCCTTGGAGA+TGG | - | chr6_1:87494340-87494359 | Msa0896760:intron | 45.0% | |
| TAGACCATCTCCAAGGATCA+TGG | + | chr6_1:87494347-87494366 | None:intergenic | 45.0% | |
| GGGTTTGTATAGTCAACTCC+GGG | - | chr6_1:87494402-87494421 | Msa0896760:intron | 45.0% | |
| GTAAGATAACTCAGGACTCG+AGG | + | chr6_1:87494473-87494492 | None:intergenic | 45.0% | |
| TATCTTACGATGATCAGCGC+CGG | - | chr6_1:87494485-87494504 | Msa0896760:intron | 45.0% | |
| ATGCTAAGGTTGGAGCAATC+AGG | + | chr6_1:87494645-87494664 | None:intergenic | 45.0% | |
| ! | CATTTTCTCAATCGGAGCGT+GGG | - | chr6_1:87494729-87494748 | Msa0896760:intron | 45.0% |
| TTGCGGTACACAATTGCGTA+GGG | + | chr6_1:87495003-87495022 | None:intergenic | 45.0% | |
| TACCGCAACATGGCAATACT+TGG | - | chr6_1:87495015-87495034 | Msa0896760:intron | 45.0% | |
| ! | CTCCAAGTATTGCCATGTTG+CGG | + | chr6_1:87495020-87495039 | None:intergenic | 45.0% |
| CAAAGCAAGAGGCAGTTATC+CGG | + | chr6_1:87495063-87495082 | None:intergenic | 45.0% | |
| !! | AAGGATTCGGTTGGTAAGGT+AGG | - | chr6_1:87495123-87495142 | Msa0896760:intron | 45.0% |
| !! | AGGATTCGGTTGGTAAGGTA+GGG | - | chr6_1:87495124-87495143 | Msa0896760:intron | 45.0% |
| CATTCCACTTCCAATGGCTA+TGG | - | chr6_1:87495152-87495171 | Msa0896760:intron | 45.0% | |
| ATTGCCATAGCCATTGGAAG+TGG | + | chr6_1:87495159-87495178 | None:intergenic | 45.0% | |
| GGAAAAGGTTGACAAGGCTA+AGG | - | chr6_1:87495245-87495264 | Msa0896760:CDS | 45.0% | |
| ATCAAACCAGAAGCAACAGC+AGG | + | chr6_1:87495285-87495304 | None:intergenic | 45.0% | |
| CACAACCGGATCAACCCAAA+TGG | + | chr6_1:87491493-87491512 | None:intergenic | 50.0% | |
| !! | TTGGGTTGATCCGGTTGTGT+TGG | - | chr6_1:87491494-87491513 | Msa0896760:CDS | 50.0% |
| GGTCTTAGTTCGATTCTCCG+TGG | - | chr6_1:87491557-87491576 | Msa0896760:CDS | 50.0% | |
| GTCCACCAAAATTGGCACCA+CGG | + | chr6_1:87491577-87491596 | None:intergenic | 50.0% | |
| AGATGTCAACGTGACACAGC+TGG | - | chr6_1:87491635-87491654 | Msa0896760:intron | 50.0% | |
| GATGTCAACGTGACACAGCT+GGG | - | chr6_1:87491636-87491655 | Msa0896760:intron | 50.0% | |
| ATGTCAACGTGACACAGCTG+GGG | - | chr6_1:87491637-87491656 | Msa0896760:intron | 50.0% | |
| TGTCTTGACCCAACCTAGTG+AGG | - | chr6_1:87491763-87491782 | Msa0896760:intron | 50.0% | |
| TGCTATGTAGGGCTATGAGG+GGG | + | chr6_1:87491791-87491810 | None:intergenic | 50.0% | |
| ATTCCCTCATAAGGCAACCG+GGG | + | chr6_1:87491895-87491914 | None:intergenic | 50.0% | |
| TTTCCGATTGAATGCGCGTC+TGG | - | chr6_1:87492879-87492898 | Msa0896760:CDS | 50.0% | |
| ACACCAGACGCGCATTCAAT+CGG | + | chr6_1:87492885-87492904 | None:intergenic | 50.0% | |
| !! | GTGCTGACTGCATGACTATG+TGG | + | chr6_1:87492990-87493009 | None:intergenic | 50.0% |
| AGTGTTAACCCTCCGGTCAT+TGG | - | chr6_1:87493067-87493086 | Msa0896760:intron | 50.0% | |
| GTCGTTGGATCGATACCAGA+TGG | + | chr6_1:87493178-87493197 | None:intergenic | 50.0% | |
| ! | TATACAGCTGCTGATGGGTG+TGG | - | chr6_1:87493675-87493694 | Msa0896760:intron | 50.0% |
| CCCAAGAAAGAACTCCTCCA+AGG | + | chr6_1:87494008-87494027 | None:intergenic | 50.0% | |
| GCCTCTCATAGAAACCAGAG+AGG | - | chr6_1:87494038-87494057 | Msa0896760:intron | 50.0% | |
| ! | CCCTCTCTGGTTTCTATGAG+AGG | + | chr6_1:87494042-87494061 | None:intergenic | 50.0% |
| CTTGAAGGTTGCTAGGACCA+AGG | + | chr6_1:87494083-87494102 | None:intergenic | 50.0% | |
| CTTGGTCCTAGCAACCTTCA+AGG | - | chr6_1:87494081-87494100 | Msa0896760:intron | 50.0% | |
| TCGTGCTTGACTGTATTCGG+TGG | - | chr6_1:87494178-87494197 | Msa0896760:intron | 50.0% | |
| ! | GCTTGACTGTATTCGGTGGA+TGG | - | chr6_1:87494182-87494201 | Msa0896760:intron | 50.0% |
| TCAACTCCGGGACAAACGAA+GGG | - | chr6_1:87494414-87494433 | Msa0896760:intron | 50.0% | |
| TGGTCCCTAGCATCAACCTA+TGG | - | chr6_1:87494697-87494716 | Msa0896760:intron | 50.0% | |
| CCACGCTCCGATTGAGAAAA+TGG | + | chr6_1:87494731-87494750 | None:intergenic | 50.0% | |
| ! | CCATTTTCTCAATCGGAGCG+TGG | - | chr6_1:87494728-87494747 | Msa0896760:intron | 50.0% |
| GATGTTCATCATGACTCCGC+AGG | + | chr6_1:87494794-87494813 | None:intergenic | 50.0% | |
| TGGCTCACAAACATGGATCG+TGG | + | chr6_1:87494877-87494896 | None:intergenic | 50.0% | |
| GTTGCGGTACACAATTGCGT+AGG | + | chr6_1:87495004-87495023 | None:intergenic | 50.0% | |
| CGCAATTGTGTACCGCAACA+TGG | - | chr6_1:87495005-87495024 | Msa0896760:intron | 50.0% | |
| ! | TTTGCACCTGCTGTTGCTTC+TGG | - | chr6_1:87495276-87495295 | Msa0896760:CDS | 50.0% |
| !! | TCCGGTTGTGTTGGCTTGCT+TGG | - | chr6_1:87491503-87491522 | Msa0896760:CDS | 55.0% |
| CCCAAGCAAGCCAACACAAC+CGG | + | chr6_1:87491507-87491526 | None:intergenic | 55.0% | |
| !! | CCGGTTGTGTTGGCTTGCTT+GGG | - | chr6_1:87491504-87491523 | Msa0896760:CDS | 55.0% |
| !! | TGTTGGCTTGCTTGGGACCT+TGG | - | chr6_1:87491511-87491530 | Msa0896760:CDS | 55.0% |
| AGTGTGCTCCGCTCCTCTTT+AGG | - | chr6_1:87491536-87491555 | Msa0896760:CDS | 55.0% | |
| !! | CTCCGTGGTGCCAATTTTGG+TGG | - | chr6_1:87491572-87491591 | Msa0896760:CDS | 55.0% |
| TCATCTTGAGGAGGAGGACC+CGG | - | chr6_1:87491839-87491858 | Msa0896760:CDS | 55.0% | |
| AGTCAGCACAACGGTAACCG+TGG | - | chr6_1:87493001-87493020 | Msa0896760:intron | 55.0% | |
| GTCAGCACAACGGTAACCGT+GGG | - | chr6_1:87493002-87493021 | Msa0896760:intron | 55.0% | |
| GTTAACCCTCCGGTCATTGG+TGG | - | chr6_1:87493070-87493089 | Msa0896760:intron | 55.0% | |
| TGAGCAGTTGCAGTACCGCT+TGG | + | chr6_1:87493438-87493457 | None:intergenic | 55.0% | |
| ! | GTTTGGCTCCTTGAGGAGTG+TGG | + | chr6_1:87493476-87493495 | None:intergenic | 55.0% |
| GTCAACTCCGGGACAAACGA+AGG | - | chr6_1:87494413-87494432 | Msa0896760:intron | 55.0% | |
| CATCTGCCCTTCGTTTGTCC+CGG | + | chr6_1:87494423-87494442 | None:intergenic | 55.0% | |
| GGCAGATGCTCTACCTGTTG+CGG | - | chr6_1:87494435-87494454 | Msa0896760:intron | 55.0% | |
| GGAGAGTCTTGATCCGCAAC+AGG | + | chr6_1:87494451-87494470 | None:intergenic | 55.0% | |
| AGGGAAGATGTGCGGCAATG+TGG | + | chr6_1:87494590-87494609 | None:intergenic | 55.0% | |
| CAAAACCGGCTACCTTACCC+TGG | - | chr6_1:87494846-87494865 | Msa0896760:intron | 55.0% | |
| TGAAGCCAGGGTAAGGTAGC+CGG | + | chr6_1:87494854-87494873 | None:intergenic | 55.0% | |
| ATCGTGGTGAAGCCAGGGTA+AGG | + | chr6_1:87494861-87494880 | None:intergenic | 55.0% | |
| CATGGATCGTGGTGAAGCCA+GGG | + | chr6_1:87494866-87494885 | None:intergenic | 55.0% | |
| ACATGGATCGTGGTGAAGCC+AGG | + | chr6_1:87494867-87494886 | None:intergenic | 55.0% | |
| ACACAATTGCGTAGGGCGCA+GGG | + | chr6_1:87494996-87495015 | None:intergenic | 55.0% | |
| TACACAATTGCGTAGGGCGC+AGG | + | chr6_1:87494997-87495016 | None:intergenic | 55.0% | |
| ATTCTTTGGCGCGGCGATTG+TGG | - | chr6_1:87495089-87495108 | Msa0896760:intron | 55.0% | |
| TCAACGTGACACAGCTGGGG+CGG | - | chr6_1:87491640-87491659 | Msa0896760:intron | 60.0% | |
| AGGGGGAGCCTCACTAGGTT+GGG | + | chr6_1:87491774-87491793 | None:intergenic | 60.0% | |
| CTATGAGGGGGAGCCTCACT+AGG | + | chr6_1:87491779-87491798 | None:intergenic | 60.0% | |
| TACCAAGCCACCTACCCTGC+CGG | + | chr6_1:87491861-87491880 | None:intergenic | 60.0% | |
| TCTGCCCCGGTTGCCTTATG+AGG | - | chr6_1:87491888-87491907 | Msa0896760:CDS | 60.0% | |
| CTGCCCCGGTTGCCTTATGA+GGG | - | chr6_1:87491889-87491908 | Msa0896760:CDS | 60.0% | |
| GAGCTCCACCAATGACCGGA+GGG | + | chr6_1:87493078-87493097 | None:intergenic | 60.0% | |
| TGAGCTCCACCAATGACCGG+AGG | + | chr6_1:87493079-87493098 | None:intergenic | 60.0% | |
| TTCTCAATCGGAGCGTGGGC+TGG | - | chr6_1:87494733-87494752 | Msa0896760:intron | 60.0% | |
| !! | TGGGCTGGTGCATCACATGG+TGG | - | chr6_1:87494748-87494767 | Msa0896760:intron | 60.0% |
| GGAGCGGAGCACACTGTCCA+AGG | + | chr6_1:87491531-87491550 | None:intergenic | 65.0% | |
| CAACGTGACACAGCTGGGGC+GGG | - | chr6_1:87491641-87491660 | Msa0896760:intron | 65.0% | |
| GAGGGGGAGCCTCACTAGGT+TGG | + | chr6_1:87491775-87491794 | None:intergenic | 65.0% | |
| TTGAGGAGGAGGACCCGGCA+GGG | - | chr6_1:87491844-87491863 | Msa0896760:CDS | 65.0% | |
| ACCAAGCCACCTACCCTGCC+GGG | + | chr6_1:87491860-87491879 | None:intergenic | 65.0% | |
| !! | GCGTGGGCTGGTGCATCACA+TGG | - | chr6_1:87494745-87494764 | Msa0896760:intron | 65.0% |
| CTTGAGGAGGAGGACCCGGC+AGG | - | chr6_1:87491843-87491862 | Msa0896760:CDS | 70.0% | |
| ACCCGGCAGGGTAGGTGGCT+TGG | - | chr6_1:87491856-87491875 | Msa0896760:CDS | 70.0% | |
| GGAGGAGGACCCGGCAGGGT+AGG | - | chr6_1:87491848-87491867 | Msa0896760:CDS | 75.0% | |
| GGAGGACCCGGCAGGGTAGG+TGG | - | chr6_1:87491851-87491870 | Msa0896760:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 87489789 | 87495732 | 87489789 | ID=Msa0896760;Name=Msa0896760 |
| chr6_1 | mRNA | 87489789 | 87495732 | 87489789 | ID=Msa0896760-mRNA-1;Parent=Msa0896760;Name=Msa0896760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=93|0.57|0.75|0.75|1|1|8|301|750 |
| chr6_1 | exon | 87489789 | 87491193 | 87489789 | ID=Msa0896760-mRNA-1:exon:14812;Parent=Msa0896760-mRNA-1 |
| chr6_1 | exon | 87491402 | 87491591 | 87491402 | ID=Msa0896760-mRNA-1:exon:14811;Parent=Msa0896760-mRNA-1 |
| chr6_1 | exon | 87491779 | 87491913 | 87491779 | ID=Msa0896760-mRNA-1:exon:14810;Parent=Msa0896760-mRNA-1 |
| chr6_1 | exon | 87492019 | 87492116 | 87492019 | ID=Msa0896760-mRNA-1:exon:14809;Parent=Msa0896760-mRNA-1 |
| chr6_1 | exon | 87492317 | 87492381 | 87492317 | ID=Msa0896760-mRNA-1:exon:14808;Parent=Msa0896760-mRNA-1 |
| chr6_1 | exon | 87492483 | 87492543 | 87492483 | ID=Msa0896760-mRNA-1:exon:14807;Parent=Msa0896760-mRNA-1 |
| chr6_1 | exon | 87492782 | 87492936 | 87492782 | ID=Msa0896760-mRNA-1:exon:14806;Parent=Msa0896760-mRNA-1 |
| chr6_1 | exon | 87495195 | 87495732 | 87495195 | ID=Msa0896760-mRNA-1:exon:14805;Parent=Msa0896760-mRNA-1 |
| chr6_1 | five_prime_UTR | 87495640 | 87495732 | 87495640 | ID=Msa0896760-mRNA-1:five_prime_utr;Parent=Msa0896760-mRNA-1 |
| chr6_1 | CDS | 87495195 | 87495639 | 87495195 | ID=Msa0896760-mRNA-1:cds;Parent=Msa0896760-mRNA-1 |
| chr6_1 | CDS | 87492782 | 87492936 | 87492782 | ID=Msa0896760-mRNA-1:cds;Parent=Msa0896760-mRNA-1 |
| chr6_1 | CDS | 87492483 | 87492543 | 87492483 | ID=Msa0896760-mRNA-1:cds;Parent=Msa0896760-mRNA-1 |
| chr6_1 | CDS | 87492317 | 87492381 | 87492317 | ID=Msa0896760-mRNA-1:cds;Parent=Msa0896760-mRNA-1 |
| chr6_1 | CDS | 87492019 | 87492116 | 87492019 | ID=Msa0896760-mRNA-1:cds;Parent=Msa0896760-mRNA-1 |
| chr6_1 | CDS | 87491779 | 87491913 | 87491779 | ID=Msa0896760-mRNA-1:cds;Parent=Msa0896760-mRNA-1 |
| chr6_1 | CDS | 87491402 | 87491591 | 87491402 | ID=Msa0896760-mRNA-1:cds;Parent=Msa0896760-mRNA-1 |
| chr6_1 | CDS | 87490090 | 87491193 | 87490090 | ID=Msa0896760-mRNA-1:cds;Parent=Msa0896760-mRNA-1 |
| chr6_1 | three_prime_UTR | 87489789 | 87490089 | 87489789 | ID=Msa0896760-mRNA-1:three_prime_utr;Parent=Msa0896760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
