AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0932840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932840 MtrunA17_Chr6g0450161 97.630 211 5 0 1 211 394 604 1.35e-147 423
Msa0932840 MtrunA17_Chr4g0039781 87.204 211 26 1 1 210 400 610 1.44e-130 380
Msa0932840 MtrunA17_Chr5g0404291 77.404 208 44 2 1 207 419 624 1.18e-104 314
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932840 AT3G03060.1 84.762 210 31 1 1 209 417 626 2.84e-126 370
Msa0932840 AT5G16930.1 84.286 210 32 1 1 209 429 638 6.45e-126 370
Msa0932840 AT2G18330.1 76.526 213 43 4 1 206 416 628 4.09e-102 308
Msa0932840 AT4G36580.1 72.512 211 54 2 1 207 413 623 3.65e-96 293

Find 68 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGTGAAATCTTATTTA+AGG 0.116790 6_3:-1131477 Msa0932840:three_prime_UTR
CCTGATTGATGGGAAGATTT+TGG 0.174586 6_3:-1131507 Msa0932840:three_prime_UTR
TGAGGGAAGTTTCTATATTT+TGG 0.177683 6_3:-1131339 Msa0932840:three_prime_UTR
CATATATATTATTGTTACTA+TGG 0.276822 6_3:+1131302 None:intergenic
CCACAAAAGATAGAGATTAA+AGG 0.293367 6_3:-1131834 Msa0932840:CDS
TAAACCCCTATTGGACTTCT+TGG 0.299729 6_3:+1132375 None:intergenic
GTCCTAGAATTTCCCTTGCC+TGG 0.304734 6_3:-1131957 Msa0932840:CDS
CCCTTAACCACGATAATTCA+TGG 0.309996 6_3:-1131366 Msa0932840:three_prime_UTR
CCGTGAAGTCGTAGATTATA+AGG 0.320677 6_3:-1131676 Msa0932840:CDS
GCATCAACAAAGAATAAAAT+TGG 0.330618 6_3:-1131646 Msa0932840:CDS
CCCCAGGCAAGGGAAATTCT+AGG 0.335721 6_3:+1131955 None:intergenic
CAGTTTCGCTATTTCCCTTC+CGG 0.338361 6_3:+1131761 None:intergenic
CTTTATGTAACACTTGATTC+AGG 0.344017 6_3:-1131423 Msa0932840:three_prime_UTR
ACCATGAATTATCGTGGTTA+AGG 0.365020 6_3:+1131365 None:intergenic
CAAGCTGGATCAAGAAAATC+TGG 0.381037 6_3:-1131882 Msa0932840:CDS
CATTGTTTGTTCCTGATTGA+TGG 0.384253 6_3:-1131518 Msa0932840:three_prime_UTR
TGTCAGCAATCTTCTAATGT+AGG 0.407721 6_3:-1131568 Msa0932840:three_prime_UTR
TCCTAGAATTTCCCTTGCCT+GGG 0.409654 6_3:-1131956 Msa0932840:CDS
ATTGGGCCAAGAAGTCCAAT+AGG 0.417609 6_3:-1132381 Msa0932840:CDS
GATACACGAGTTGTTTGATT+GGG 0.423129 6_3:-1132398 Msa0932840:CDS
CCATGAATTATCGTGGTTAA+GGG 0.432002 6_3:+1131366 None:intergenic
ATTTCCCTTGCCTGGGGAAG+AGG 0.433738 6_3:-1131949 Msa0932840:CDS
AGTGTCCAAGCTGCCGTGTA+TGG 0.437138 6_3:-1131732 Msa0932840:CDS
GTCAGCAATCTTCTAATGTA+GGG 0.444887 6_3:-1131567 Msa0932840:three_prime_UTR
TTGGGCCAAGAAGTCCAATA+GGG 0.448894 6_3:-1132380 Msa0932840:CDS
CCAAAATCTTCCCATCAATC+AGG 0.450108 6_3:+1131507 None:intergenic
TAAGGACTATGTCTTTAGAT+TGG 0.453660 6_3:+1132039 None:intergenic
CCTTATAATCTACGACTTCA+CGG 0.459640 6_3:+1131676 None:intergenic
AGATACACGAGTTGTTTGAT+TGG 0.464111 6_3:-1132399 Msa0932840:CDS
GACGGTTCGTCGCAAGGGTA+AGG 0.467778 6_3:+1132021 None:intergenic
ATTGAGCGATGATATCATAA+AGG 0.472275 6_3:-1131811 Msa0932840:CDS
ACGATAATTCATGGTGATTG+AGG 0.478951 6_3:-1131357 Msa0932840:three_prime_UTR
CACCAGGACGGTTCGTCGCA+AGG 0.481372 6_3:+1132015 None:intergenic
CGCTTCCATACACGGCAGCT+TGG 0.482291 6_3:+1131727 None:intergenic
CGATAATTCATGGTGATTGA+GGG 0.488534 6_3:-1131356 Msa0932840:three_prime_UTR
TGTTGCTCCACTCGGATCAC+AGG 0.494047 6_3:-1132431 Msa0932840:CDS
AATGCCCTTCTCTTTCGTAC+TGG 0.505763 6_3:-1132065 Msa0932840:CDS
CGCTCCTCTTCCCCAGGCAA+GGG 0.507955 6_3:+1131945 None:intergenic
GCAATCTTCTAATGTAGGGC+TGG 0.510520 6_3:-1131563 Msa0932840:three_prime_UTR
AACAATGATAAAAGCATGCT+CGG 0.514020 6_3:+1131534 None:intergenic
ACCCTTGCGACGAACCGTCC+TGG 0.519465 6_3:-1132017 Msa0932840:CDS
GACAAGTACATAGCTCAAGC+TGG 0.523738 6_3:-1131897 Msa0932840:CDS
ACGCTCCTCTTCCCCAGGCA+AGG 0.527101 6_3:+1131944 None:intergenic
CTTGAGCTATGTACTTGTCT+AGG 0.530944 6_3:+1131901 None:intergenic
TTGGATTATGCATTGATGAC+TGG 0.537644 6_3:-1132460 None:intergenic
TTCCCTTCCGGAAAATCCAT+CGG 0.538043 6_3:+1131773 None:intergenic
ACCAGGACGGTTCGTCGCAA+GGG 0.541165 6_3:+1132016 None:intergenic
TTAAAACGCTCCTCTTCCCC+AGG 0.548339 6_3:+1131939 None:intergenic
ATTGTTTGTTCCTGATTGAT+GGG 0.555780 6_3:-1131517 Msa0932840:three_prime_UTR
GGAGGAGATGTTGCTCCACT+CGG 0.565757 6_3:-1132439 Msa0932840:CDS
ATTCTAGGACCTCATCAATA+CGG 0.565931 6_3:+1131970 None:intergenic
GGTCTGCTACAGCTGAATCA+AGG 0.566819 6_3:+1131991 None:intergenic
TCAAGTGTTACATAAAGTCA+TGG 0.577090 6_3:+1131429 None:intergenic
ACAGTTGTCGCTTCCATACA+CGG 0.583469 6_3:+1131719 None:intergenic
GGTCACCAGTACGAAAGAGA+AGG 0.606869 6_3:+1132060 None:intergenic
GTCACCAGTACGAAAGAGAA+GGG 0.611997 6_3:+1132061 None:intergenic
CACGGAACAAGCTTGCGTCA+AGG 0.619585 6_3:+1131694 None:intergenic
GAAGCCGCAGCTAAAACCGA+TGG 0.622294 6_3:-1131789 Msa0932840:CDS
ACAGCTGAATCAAGGTCACC+AGG 0.637144 6_3:+1131999 None:intergenic
AAGGGAAATAGCGAAACTGA+TGG 0.642775 6_3:-1131757 Msa0932840:CDS
CCTAGAATTTCCCTTGCCTG+GGG 0.646412 6_3:-1131955 Msa0932840:CDS
GTTACAGCCTGTGATCCGAG+TGG 0.647718 6_3:+1132424 None:intergenic
CTGAATCAAGGTCACCAGGA+CGG 0.653067 6_3:+1132003 None:intergenic
TCAATCACCATGAATTATCG+TGG 0.662698 6_3:+1131359 None:intergenic
TGTAGCAGACCGTATTGATG+AGG 0.665500 6_3:-1131979 Msa0932840:CDS
TGGGCCAAGAAGTCCAATAG+GGG 0.667815 6_3:-1132379 Msa0932840:CDS
GATTATGCATTGATGACTGG+AGG 0.668224 6_3:-1132457 None:intergenic
TAAAGCTTAGTTAGTGCACG+AGG 0.699195 6_3:-1131613 Msa0932840:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATATATGAAAAGCA+TGG + chr6_3:1131450-1131469 None:intergenic 15.0%
!!! TTATAGTGAAATCTTATTTA+AGG - chr6_3:1132263-1132282 Msa0932840:intron 15.0%
!! CATATATATTATTGTTACTA+TGG + chr6_3:1132441-1132460 None:intergenic 15.0%
!! ATAATAATATATGAAAAGCA+TGG + chr6_3:1131450-1131469 None:intergenic 15.0%
!!! TTATAGTGAAATCTTATTTA+AGG - chr6_3:1132263-1132282 Msa0932840:intron 15.0%
!! CATATATATTATTGTTACTA+TGG + chr6_3:1132441-1132460 None:intergenic 15.0%
!! AATATATGAAAAGCATGGAA+TGG + chr6_3:1131445-1131464 None:intergenic 25.0%
! TCATATATTATTATCCGACT+CGG - chr6_3:1131456-1131475 Msa0932840:three_prime_UTR 25.0%
! AAAAGTAATGAAATTGCATC+TGG + chr6_3:1131514-1131533 None:intergenic 25.0%
!! CTTTAATCTCTATCTTTTGT+GGG + chr6_3:1131908-1131927 None:intergenic 25.0%
! GCATCAACAAAGAATAAAAT+TGG - chr6_3:1132094-1132113 Msa0932840:CDS 25.0%
!! AATATATGAAAAGCATGGAA+TGG + chr6_3:1131445-1131464 None:intergenic 25.0%
! TCATATATTATTATCCGACT+CGG - chr6_3:1131456-1131475 Msa0932840:three_prime_UTR 25.0%
! AAAAGTAATGAAATTGCATC+TGG + chr6_3:1131514-1131533 None:intergenic 25.0%
!! CTTTAATCTCTATCTTTTGT+GGG + chr6_3:1131908-1131927 None:intergenic 25.0%
! GCATCAACAAAGAATAAAAT+TGG - chr6_3:1132094-1132113 Msa0932840:CDS 25.0%
!! TGCAACTTTTACTCACTTTT+TGG + chr6_3:1131553-1131572 None:intergenic 30.0%
TGAGAATTGTCTGAGAAAAT+TGG - chr6_3:1131596-1131615 Msa0932840:three_prime_UTR 30.0%
GAGAATTGTCTGAGAAAATT+GGG - chr6_3:1131597-1131616 Msa0932840:three_prime_UTR 30.0%
TAAGGACTATGTCTTTAGAT+TGG + chr6_3:1131704-1131723 None:intergenic 30.0%
! CCTTTAATCTCTATCTTTTG+TGG + chr6_3:1131909-1131928 None:intergenic 30.0%
CCACAAAAGATAGAGATTAA+AGG - chr6_3:1131906-1131925 Msa0932840:CDS 30.0%
ATTGAGCGATGATATCATAA+AGG - chr6_3:1131929-1131948 Msa0932840:CDS 30.0%
! AACAATGATAAAAGCATGCT+CGG + chr6_3:1132209-1132228 None:intergenic 30.0%
ATTGTTTGTTCCTGATTGAT+GGG - chr6_3:1132223-1132242 Msa0932840:intron 30.0%
TCAAGTGTTACATAAAGTCA+TGG + chr6_3:1132314-1132333 None:intergenic 30.0%
CTTTATGTAACACTTGATTC+AGG - chr6_3:1132317-1132336 Msa0932840:intron 30.0%
! TGAGGGAAGTTTCTATATTT+TGG - chr6_3:1132401-1132420 Msa0932840:CDS 30.0%
!! TGCAACTTTTACTCACTTTT+TGG + chr6_3:1131553-1131572 None:intergenic 30.0%
TGAGAATTGTCTGAGAAAAT+TGG - chr6_3:1131596-1131615 Msa0932840:three_prime_UTR 30.0%
GAGAATTGTCTGAGAAAATT+GGG - chr6_3:1131597-1131616 Msa0932840:three_prime_UTR 30.0%
TAAGGACTATGTCTTTAGAT+TGG + chr6_3:1131704-1131723 None:intergenic 30.0%
! CCTTTAATCTCTATCTTTTG+TGG + chr6_3:1131909-1131928 None:intergenic 30.0%
CCACAAAAGATAGAGATTAA+AGG - chr6_3:1131906-1131925 Msa0932840:CDS 30.0%
ATTGAGCGATGATATCATAA+AGG - chr6_3:1131929-1131948 Msa0932840:CDS 30.0%
! AACAATGATAAAAGCATGCT+CGG + chr6_3:1132209-1132228 None:intergenic 30.0%
ATTGTTTGTTCCTGATTGAT+GGG - chr6_3:1132223-1132242 Msa0932840:intron 30.0%
TCAAGTGTTACATAAAGTCA+TGG + chr6_3:1132314-1132333 None:intergenic 30.0%
CTTTATGTAACACTTGATTC+AGG - chr6_3:1132317-1132336 Msa0932840:intron 30.0%
! TGAGGGAAGTTTCTATATTT+TGG - chr6_3:1132401-1132420 Msa0932840:CDS 30.0%
AGATACACGAGTTGTTTGAT+TGG - chr6_3:1131341-1131360 Msa0932840:three_prime_UTR 35.0%
GATACACGAGTTGTTTGATT+GGG - chr6_3:1131342-1131361 Msa0932840:three_prime_UTR 35.0%
AAAAAGCAGTAAACCCCTAT+TGG + chr6_3:1131377-1131396 None:intergenic 35.0%
! GAAAATTGGGTGAATTTTGC+AGG - chr6_3:1131610-1131629 Msa0932840:exon 35.0%
!! ATTCTAGGACCTCATCAATA+CGG + chr6_3:1131773-1131792 None:intergenic 35.0%
CCTTATAATCTACGACTTCA+CGG + chr6_3:1132067-1132086 None:intergenic 35.0%
TGTCAGCAATCTTCTAATGT+AGG - chr6_3:1132172-1132191 Msa0932840:intron 35.0%
GTCAGCAATCTTCTAATGTA+GGG - chr6_3:1132173-1132192 Msa0932840:intron 35.0%
CATTGTTTGTTCCTGATTGA+TGG - chr6_3:1132222-1132241 Msa0932840:intron 35.0%
CCATGAATTATCGTGGTTAA+GGG + chr6_3:1132377-1132396 None:intergenic 35.0%
ACCATGAATTATCGTGGTTA+AGG + chr6_3:1132378-1132397 None:intergenic 35.0%
TCAATCACCATGAATTATCG+TGG + chr6_3:1132384-1132403 None:intergenic 35.0%
ACGATAATTCATGGTGATTG+AGG - chr6_3:1132383-1132402 Msa0932840:CDS 35.0%
CGATAATTCATGGTGATTGA+GGG - chr6_3:1132384-1132403 Msa0932840:CDS 35.0%
AGATACACGAGTTGTTTGAT+TGG - chr6_3:1131341-1131360 Msa0932840:three_prime_UTR 35.0%
GATACACGAGTTGTTTGATT+GGG - chr6_3:1131342-1131361 Msa0932840:three_prime_UTR 35.0%
AAAAAGCAGTAAACCCCTAT+TGG + chr6_3:1131377-1131396 None:intergenic 35.0%
! GAAAATTGGGTGAATTTTGC+AGG - chr6_3:1131610-1131629 Msa0932840:exon 35.0%
!! ATTCTAGGACCTCATCAATA+CGG + chr6_3:1131773-1131792 None:intergenic 35.0%
CCTTATAATCTACGACTTCA+CGG + chr6_3:1132067-1132086 None:intergenic 35.0%
TGTCAGCAATCTTCTAATGT+AGG - chr6_3:1132172-1132191 Msa0932840:intron 35.0%
GTCAGCAATCTTCTAATGTA+GGG - chr6_3:1132173-1132192 Msa0932840:intron 35.0%
CATTGTTTGTTCCTGATTGA+TGG - chr6_3:1132222-1132241 Msa0932840:intron 35.0%
CCATGAATTATCGTGGTTAA+GGG + chr6_3:1132377-1132396 None:intergenic 35.0%
ACCATGAATTATCGTGGTTA+AGG + chr6_3:1132378-1132397 None:intergenic 35.0%
TCAATCACCATGAATTATCG+TGG + chr6_3:1132384-1132403 None:intergenic 35.0%
ACGATAATTCATGGTGATTG+AGG - chr6_3:1132383-1132402 Msa0932840:CDS 35.0%
CGATAATTCATGGTGATTGA+GGG - chr6_3:1132384-1132403 Msa0932840:CDS 35.0%
TAAACCCCTATTGGACTTCT+TGG + chr6_3:1131368-1131387 None:intergenic 40.0%
! AATTGGGTGAATTTTGCAGG+CGG - chr6_3:1131613-1131632 Msa0932840:exon 40.0%
CTTGAGCTATGTACTTGTCT+AGG + chr6_3:1131842-1131861 None:intergenic 40.0%
CAAGCTGGATCAAGAAAATC+TGG - chr6_3:1131858-1131877 Msa0932840:CDS 40.0%
!!! AAATCCATCGGTTTTAGCTG+CGG + chr6_3:1131958-1131977 None:intergenic 40.0%
!! GCTAAAACCGATGGATTTTC+CGG - chr6_3:1131960-1131979 Msa0932840:CDS 40.0%
AAGGGAAATAGCGAAACTGA+TGG - chr6_3:1131983-1132002 Msa0932840:CDS 40.0%
CCGTGAAGTCGTAGATTATA+AGG - chr6_3:1132064-1132083 Msa0932840:CDS 40.0%
TAAAGCTTAGTTAGTGCACG+AGG - chr6_3:1132127-1132146 Msa0932840:intron 40.0%
CCAAAATCTTCCCATCAATC+AGG + chr6_3:1132236-1132255 None:intergenic 40.0%
! CCTGATTGATGGGAAGATTT+TGG - chr6_3:1132233-1132252 Msa0932840:intron 40.0%
CCCTTAACCACGATAATTCA+TGG - chr6_3:1132374-1132393 Msa0932840:CDS 40.0%
TAAACCCCTATTGGACTTCT+TGG + chr6_3:1131368-1131387 None:intergenic 40.0%
! AATTGGGTGAATTTTGCAGG+CGG - chr6_3:1131613-1131632 Msa0932840:exon 40.0%
CTTGAGCTATGTACTTGTCT+AGG + chr6_3:1131842-1131861 None:intergenic 40.0%
CAAGCTGGATCAAGAAAATC+TGG - chr6_3:1131858-1131877 Msa0932840:CDS 40.0%
!!! AAATCCATCGGTTTTAGCTG+CGG + chr6_3:1131958-1131977 None:intergenic 40.0%
!! GCTAAAACCGATGGATTTTC+CGG - chr6_3:1131960-1131979 Msa0932840:CDS 40.0%
AAGGGAAATAGCGAAACTGA+TGG - chr6_3:1131983-1132002 Msa0932840:CDS 40.0%
CCGTGAAGTCGTAGATTATA+AGG - chr6_3:1132064-1132083 Msa0932840:CDS 40.0%
TAAAGCTTAGTTAGTGCACG+AGG - chr6_3:1132127-1132146 Msa0932840:intron 40.0%
CCAAAATCTTCCCATCAATC+AGG + chr6_3:1132236-1132255 None:intergenic 40.0%
! CCTGATTGATGGGAAGATTT+TGG - chr6_3:1132233-1132252 Msa0932840:intron 40.0%
CCCTTAACCACGATAATTCA+TGG - chr6_3:1132374-1132393 Msa0932840:CDS 40.0%
ATTGGGCCAAGAAGTCCAAT+AGG - chr6_3:1131359-1131378 Msa0932840:three_prime_UTR 45.0%
TTGGGCCAAGAAGTCCAATA+GGG - chr6_3:1131360-1131379 Msa0932840:three_prime_UTR 45.0%
!! ATTATCCGACTCGGTTCTTG+TGG - chr6_3:1131465-1131484 Msa0932840:three_prime_UTR 45.0%
AATGCCCTTCTCTTTCGTAC+TGG - chr6_3:1131675-1131694 Msa0932840:CDS 45.0%
GTCACCAGTACGAAAGAGAA+GGG + chr6_3:1131682-1131701 None:intergenic 45.0%
! TGTAGCAGACCGTATTGATG+AGG - chr6_3:1131761-1131780 Msa0932840:CDS 45.0%
TCCTAGAATTTCCCTTGCCT+GGG - chr6_3:1131784-1131803 Msa0932840:CDS 45.0%
GACAAGTACATAGCTCAAGC+TGG - chr6_3:1131843-1131862 Msa0932840:CDS 45.0%
!! AAACCGATGGATTTTCCGGA+AGG - chr6_3:1131964-1131983 Msa0932840:CDS 45.0%
!! AACCGATGGATTTTCCGGAA+GGG - chr6_3:1131965-1131984 Msa0932840:CDS 45.0%
TTCCCTTCCGGAAAATCCAT+CGG + chr6_3:1131970-1131989 None:intergenic 45.0%
! CAGTTTCGCTATTTCCCTTC+CGG + chr6_3:1131982-1132001 None:intergenic 45.0%
! ACAGTTGTCGCTTCCATACA+CGG + chr6_3:1132024-1132043 None:intergenic 45.0%
GCAATCTTCTAATGTAGGGC+TGG - chr6_3:1132177-1132196 Msa0932840:intron 45.0%
ATTGGGCCAAGAAGTCCAAT+AGG - chr6_3:1131359-1131378 Msa0932840:three_prime_UTR 45.0%
TTGGGCCAAGAAGTCCAATA+GGG - chr6_3:1131360-1131379 Msa0932840:three_prime_UTR 45.0%
!! ATTATCCGACTCGGTTCTTG+TGG - chr6_3:1131465-1131484 Msa0932840:three_prime_UTR 45.0%
AATGCCCTTCTCTTTCGTAC+TGG - chr6_3:1131675-1131694 Msa0932840:CDS 45.0%
GTCACCAGTACGAAAGAGAA+GGG + chr6_3:1131682-1131701 None:intergenic 45.0%
! TGTAGCAGACCGTATTGATG+AGG - chr6_3:1131761-1131780 Msa0932840:CDS 45.0%
TCCTAGAATTTCCCTTGCCT+GGG - chr6_3:1131784-1131803 Msa0932840:CDS 45.0%
GACAAGTACATAGCTCAAGC+TGG - chr6_3:1131843-1131862 Msa0932840:CDS 45.0%
!! AAACCGATGGATTTTCCGGA+AGG - chr6_3:1131964-1131983 Msa0932840:CDS 45.0%
!! AACCGATGGATTTTCCGGAA+GGG - chr6_3:1131965-1131984 Msa0932840:CDS 45.0%
TTCCCTTCCGGAAAATCCAT+CGG + chr6_3:1131970-1131989 None:intergenic 45.0%
! CAGTTTCGCTATTTCCCTTC+CGG + chr6_3:1131982-1132001 None:intergenic 45.0%
! ACAGTTGTCGCTTCCATACA+CGG + chr6_3:1132024-1132043 None:intergenic 45.0%
GCAATCTTCTAATGTAGGGC+TGG - chr6_3:1132177-1132196 Msa0932840:intron 45.0%
TGGGCCAAGAAGTCCAATAG+GGG - chr6_3:1131361-1131380 Msa0932840:three_prime_UTR 50.0%
TGATGCCACAAGAACCGAGT+CGG + chr6_3:1131473-1131492 None:intergenic 50.0%
GGTCACCAGTACGAAAGAGA+AGG + chr6_3:1131683-1131702 None:intergenic 50.0%
CTGAATCAAGGTCACCAGGA+CGG + chr6_3:1131740-1131759 None:intergenic 50.0%
ACAGCTGAATCAAGGTCACC+AGG + chr6_3:1131744-1131763 None:intergenic 50.0%
GGTCTGCTACAGCTGAATCA+AGG + chr6_3:1131752-1131771 None:intergenic 50.0%
GTCCTAGAATTTCCCTTGCC+TGG - chr6_3:1131783-1131802 Msa0932840:CDS 50.0%
CCTAGAATTTCCCTTGCCTG+GGG - chr6_3:1131785-1131804 Msa0932840:CDS 50.0%
TTAAAACGCTCCTCTTCCCC+AGG + chr6_3:1131804-1131823 None:intergenic 50.0%
AGCAACATCTCCTCCAGTCA+TGG + chr6_3:1131296-1131315 None:intergenic 50.0%
TGGGCCAAGAAGTCCAATAG+GGG - chr6_3:1131361-1131380 Msa0932840:three_prime_UTR 50.0%
TGATGCCACAAGAACCGAGT+CGG + chr6_3:1131473-1131492 None:intergenic 50.0%
GGTCACCAGTACGAAAGAGA+AGG + chr6_3:1131683-1131702 None:intergenic 50.0%
CTGAATCAAGGTCACCAGGA+CGG + chr6_3:1131740-1131759 None:intergenic 50.0%
ACAGCTGAATCAAGGTCACC+AGG + chr6_3:1131744-1131763 None:intergenic 50.0%
GGTCTGCTACAGCTGAATCA+AGG + chr6_3:1131752-1131771 None:intergenic 50.0%
GTCCTAGAATTTCCCTTGCC+TGG - chr6_3:1131783-1131802 Msa0932840:CDS 50.0%
CCTAGAATTTCCCTTGCCTG+GGG - chr6_3:1131785-1131804 Msa0932840:CDS 50.0%
TTAAAACGCTCCTCTTCCCC+AGG + chr6_3:1131804-1131823 None:intergenic 50.0%
GGAGGAGATGTTGCTCCACT+CGG - chr6_3:1131301-1131320 Msa0932840:three_prime_UTR 55.0%
TGTTGCTCCACTCGGATCAC+AGG - chr6_3:1131309-1131328 Msa0932840:three_prime_UTR 55.0%
GTTACAGCCTGTGATCCGAG+TGG + chr6_3:1131319-1131338 None:intergenic 55.0%
CCCCAGGCAAGGGAAATTCT+AGG + chr6_3:1131788-1131807 None:intergenic 55.0%
ATTTCCCTTGCCTGGGGAAG+AGG - chr6_3:1131791-1131810 Msa0932840:CDS 55.0%
GAAGCCGCAGCTAAAACCGA+TGG - chr6_3:1131951-1131970 Msa0932840:CDS 55.0%
AGTGTCCAAGCTGCCGTGTA+TGG - chr6_3:1132008-1132027 Msa0932840:CDS 55.0%
CACGGAACAAGCTTGCGTCA+AGG + chr6_3:1132049-1132068 None:intergenic 55.0%
GGAGGAGATGTTGCTCCACT+CGG - chr6_3:1131301-1131320 Msa0932840:three_prime_UTR 55.0%
TGTTGCTCCACTCGGATCAC+AGG - chr6_3:1131309-1131328 Msa0932840:three_prime_UTR 55.0%
GTTACAGCCTGTGATCCGAG+TGG + chr6_3:1131319-1131338 None:intergenic 55.0%
CCCCAGGCAAGGGAAATTCT+AGG + chr6_3:1131788-1131807 None:intergenic 55.0%
ATTTCCCTTGCCTGGGGAAG+AGG - chr6_3:1131791-1131810 Msa0932840:CDS 55.0%
GAAGCCGCAGCTAAAACCGA+TGG - chr6_3:1131951-1131970 Msa0932840:CDS 55.0%
AGTGTCCAAGCTGCCGTGTA+TGG - chr6_3:1132008-1132027 Msa0932840:CDS 55.0%
CACGGAACAAGCTTGCGTCA+AGG + chr6_3:1132049-1132068 None:intergenic 55.0%
GACGGTTCGTCGCAAGGGTA+AGG + chr6_3:1131722-1131741 None:intergenic 60.0%
ACCAGGACGGTTCGTCGCAA+GGG + chr6_3:1131727-1131746 None:intergenic 60.0%
CGCTTCCATACACGGCAGCT+TGG + chr6_3:1132016-1132035 None:intergenic 60.0%
GACGGTTCGTCGCAAGGGTA+AGG + chr6_3:1131722-1131741 None:intergenic 60.0%
ACCAGGACGGTTCGTCGCAA+GGG + chr6_3:1131727-1131746 None:intergenic 60.0%
CGCTTCCATACACGGCAGCT+TGG + chr6_3:1132016-1132035 None:intergenic 60.0%
ACCCTTGCGACGAACCGTCC+TGG - chr6_3:1131723-1131742 Msa0932840:CDS 65.0%
CACCAGGACGGTTCGTCGCA+AGG + chr6_3:1131728-1131747 None:intergenic 65.0%
CGCTCCTCTTCCCCAGGCAA+GGG + chr6_3:1131798-1131817 None:intergenic 65.0%
ACGCTCCTCTTCCCCAGGCA+AGG + chr6_3:1131799-1131818 None:intergenic 65.0%
ACCCTTGCGACGAACCGTCC+TGG - chr6_3:1131723-1131742 Msa0932840:CDS 65.0%
CACCAGGACGGTTCGTCGCA+AGG + chr6_3:1131728-1131747 None:intergenic 65.0%
CGCTCCTCTTCCCCAGGCAA+GGG + chr6_3:1131798-1131817 None:intergenic 65.0%
ACGCTCCTCTTCCCCAGGCA+AGG + chr6_3:1131799-1131818 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 1131295 1132467 1131295 ID=Msa0932840;Name=Msa0932840
chr6_3 mRNA 1131295 1132467 1131295 ID=Msa0932840-mRNA-1;Parent=Msa0932840;Name=Msa0932840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|2|331|211
chr6_3 exon 1131295 1132130 1131295 ID=Msa0932840-mRNA-1:exon:463;Parent=Msa0932840-mRNA-1
chr6_3 exon 1132337 1132467 1132337 ID=Msa0932840-mRNA-1:exon:462;Parent=Msa0932840-mRNA-1
chr6_3 CDS 1132337 1132467 1132337 ID=Msa0932840-mRNA-1:cds;Parent=Msa0932840-mRNA-1
chr6_3 CDS 1131626 1132130 1131626 ID=Msa0932840-mRNA-1:cds;Parent=Msa0932840-mRNA-1
chr6_3 three_prime_UTR 1131295 1131625 1131295 ID=Msa0932840-mRNA-1:three_prime_utr;Parent=Msa0932840-mRNA-1
Gene Sequence

>Msa0932840

ATGACTGGAGGAGATGTTGCTCCACTCGGATCACAGGCTGTAACAAAGATACACGAGTTGTTTGATTGGGCCAAGAAGTCCAATAGGGGTTTACTGCTTTTTATTGACGAAGCTGATGCATTTCTATGCGAGCGGAACAAGACGTATATGAGTGAAGCACAAAGAAGTGCACTAAATGCCCTTCTCTTTCGTACTGGTGACCAATCTAAAGACATAGTCCTTACCCTTGCGACGAACCGTCCTGGTGACCTTGATTCAGCTGTAGCAGACCGTATTGATGAGGTCCTAGAATTTCCCTTGCCTGGGGAAGAGGAGCGTTTTAAACTTCTTAAGCTCTACCTAGACAAGTACATAGCTCAAGCTGGATCAAGAAAATCTGGTTTATTATCATTGTTCAAAGCAAGCCCACAAAAGATAGAGATTAAAGGATTGAGCGATGATATCATAAAGGAAGCCGCAGCTAAAACCGATGGATTTTCCGGAAGGGAAATAGCGAAACTGATGGCAAGTGTCCAAGCTGCCGTGTATGGAAGCGACAACTGTATCCTTGACGCAAGCTTGTTCCGTGAAGTCGTAGATTATAAGGTTGCTGAGCATCAACAAAGAATAAAATTGGCAGCTTCTGATAAAGCTTAG
Protein sequence

>Msa0932840

MTGGDVAPLGSQAVTKIHELFDWAKKSNRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLTLATNRPGDLDSAVADRIDEVLEFPLPGEEERFKLLKLYLDKYIAQAGSRKSGLLSLFKASPQKIEIKGLSDDIIKEAAAKTDGFSGREIAKLMASVQAAVYGSDNCILDASLFREVVDYKVAEHQQRIKLAASDKA*