AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0337240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337240 MtrunA17_Chr1g0198561 88.435 294 21 1 3 283 1 294 0.0 533
Msa0337240 MtrunA17_Chr6g0450631 87.755 294 23 1 3 283 1 294 0.0 531
Msa0337240 MtrunA17_Chr2g0324401 98.113 106 2 0 178 283 1 106 1.42e-72 218
Msa0337240 MtrunA17_Chr3g0145851 40.097 207 105 7 51 240 58 262 4.31e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337240 AT3G17465.1 62.037 324 80 5 3 283 1 324 1.38e-133 381
Msa0337240 AT2G43030.1 41.520 171 97 3 72 240 92 261 1.84e-32 120

Find 97 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACTTCTTAACTTATTA+TGG 0.156094 2_4:-57212572 None:intergenic
TGGGGATGTGGATCCATTTA+TGG 0.158517 2_4:+57212154 Msa0337240:CDS
TGACTGCACTTTGGGATAAA+TGG 0.171985 2_4:+57209936 Msa0337240:CDS
TGTAGTATCTTAACAAATTT+TGG 0.194392 2_4:+57212435 Msa0337240:three_prime_UTR
TAAAGAGATAGTTCAGAAAA+TGG 0.216730 2_4:+57212185 Msa0337240:exon
CTTTAATCAGTAACCATAAA+TGG 0.233502 2_4:-57212167 None:intergenic
CCTTCACTGGTTAACTTCTA+AGG 0.234383 2_4:+57212316 Msa0337240:three_prime_UTR
GAGTTCCAATTTCTATCCTT+TGG 0.251026 2_4:+57209966 Msa0337240:CDS
AGTTCCAATTTCTATCCTTT+GGG 0.317691 2_4:+57209967 Msa0337240:CDS
CATAGAACCATGGGTTCTTC+AGG 0.322897 2_4:+57211160 Msa0337240:CDS
CTCCTGAAGCTTCCTCTTCA+TGG 0.339965 2_4:-57210264 None:intergenic
TCAACCCAAAGGATAGAAAT+TGG 0.341302 2_4:-57209971 None:intergenic
ACCCACATCAAATTTCTTGC+TGG 0.343726 2_4:-57211444 None:intergenic
TCATCTGTATCTTCATCTTC+TGG 0.348247 2_4:-57212107 None:intergenic
AAACCTCTGGTTGCTGATCT+TGG 0.349915 2_4:+57212134 Msa0337240:CDS
GCCCTAAAATGACCCACTTC+CGG 0.360298 2_4:-57210230 None:intergenic
CATACTGTCCGGGAACAAAA+TGG 0.364379 2_4:-57210340 None:intergenic
AACCTCTGGTTGCTGATCTT+GGG 0.368580 2_4:+57212135 Msa0337240:CDS
ACACCAGTTCGTTGTGAATT+CGG 0.370596 2_4:-57209893 None:intergenic
GATTGGTTGTGGACAGAAGA+AGG 0.380825 2_4:+57210190 Msa0337240:intron
CTTCTGTTTACAGGGTGTAA+TGG 0.384171 2_4:+57211087 Msa0337240:intron
CAAATAAATTAGCTTCAAAA+AGG 0.385273 2_4:-57212397 None:intergenic
AAAGAGATAGTTCAGAAAAT+GGG 0.389407 2_4:+57212186 Msa0337240:exon
AGGAATGCTTGGTCCTTGTA+AGG 0.397571 2_4:+57211180 Msa0337240:CDS
TCCCATGAAGAGGAAGCTTC+AGG 0.402123 2_4:+57210262 Msa0337240:CDS
ATGTGGAATGACTGCACTTT+GGG 0.405645 2_4:+57209928 Msa0337240:CDS
ATGCAGGTCCCAGGAGCTAC+AGG 0.423543 2_4:+57212008 Msa0337240:intron
GACTGCACTTTGGGATAAAT+GGG 0.426337 2_4:+57209937 Msa0337240:CDS
ACAAAGTTCCCTGTAGCTCC+TGG 0.431609 2_4:-57212017 None:intergenic
AACCGCGGCAGTGGCACCAC+AGG 0.433121 2_4:-57209812 None:intergenic
TCTTCTGGCACAAAGTAAGT+TGG 0.439664 2_4:-57212092 None:intergenic
GTTCGGAGGTGGAGACTATA+CGG 0.442293 2_4:+57209840 Msa0337240:CDS
GGTTGCTGATCTTGGGGATG+TGG 0.454818 2_4:+57212142 Msa0337240:CDS
AATGGACCGGTATGATTTCA+AGG 0.462175 2_4:+57211105 Msa0337240:CDS
TGATGACAACATTGTCTCTC+AGG 0.468175 2_4:+57209991 Msa0337240:CDS
GTTACTTTGAGACTTGGAAT+TGG 0.474197 2_4:+57212341 Msa0337240:three_prime_UTR
AGAAATTTGATGTGGGTGAA+AGG 0.489286 2_4:+57211450 Msa0337240:CDS
CTTCTGGCACAAAGTAAGTT+GGG 0.491443 2_4:-57212091 None:intergenic
ACCTCTGGTTGCTGATCTTG+GGG 0.494514 2_4:+57212136 Msa0337240:CDS
ACACCGAATTCACAACGAAC+TGG 0.499424 2_4:+57209890 Msa0337240:CDS
ACAGGAATCACTAAAGGAAA+AGG 0.499985 2_4:+57210371 Msa0337240:CDS
AAGGTTGTTACTTTGAGACT+TGG 0.502193 2_4:+57212335 Msa0337240:three_prime_UTR
GGACTCCATCCAACCTTACA+AGG 0.504118 2_4:-57211193 None:intergenic
TTCTTAACTTATTATGGACA+TGG 0.506757 2_4:-57212566 None:intergenic
ATGGGTTCTTCAGGAATGCT+TGG 0.507345 2_4:+57211169 Msa0337240:CDS
ACATTAAGCGATGTACCAAC+AGG 0.508189 2_4:-57210314 None:intergenic
GAGGCGTGGTTTCTCGTCTA+CGG 0.509855 2_4:+57209783 Msa0337240:CDS
TGTGATGTCAACATACTGTC+CGG 0.509894 2_4:-57210351 None:intergenic
TATGTGCTTTCGAATTCCCA+TGG 0.513084 2_4:-57211141 None:intergenic
ACACTCGACAAAGCCGGAAG+TGG 0.514154 2_4:+57210217 Msa0337240:CDS
TCCTGAAGCTTCCTCTTCAT+GGG 0.524646 2_4:-57210263 None:intergenic
TGCTTCCCACCCATTCTCCC+CGG 0.526048 2_4:-57211384 None:intergenic
TTTGATGTGGGTGAAAGGCC+AGG 0.528326 2_4:+57211455 Msa0337240:CDS
AAAATGCCGGGGAGAATGGG+TGG 0.532086 2_4:+57211378 Msa0337240:CDS
TCTTAACTTATTATGGACAT+GGG 0.538489 2_4:-57212565 None:intergenic
AATGTGGAATGACTGCACTT+TGG 0.543439 2_4:+57209927 Msa0337240:CDS
AAAGGAAGTATAGATGTCTC+AGG 0.543480 2_4:-57212068 None:intergenic
TACAGATGATATGAAACCTC+TGG 0.545460 2_4:+57212121 Msa0337240:CDS
GACATCACAGGAATCACTAA+AGG 0.546953 2_4:+57210365 Msa0337240:CDS
GGAGAAACACTCGACAAAGC+CGG 0.547066 2_4:+57210211 Msa0337240:CDS
GAGGATGCACTTCTTCCTGT+TGG 0.552055 2_4:+57210299 Msa0337240:CDS
CTCAAGGAGTTCCCATGAAG+AGG 0.552464 2_4:+57210252 Msa0337240:CDS
GTTTACAGGGTGTAATGGAC+CGG 0.553779 2_4:+57211092 Msa0337240:intron
CAAAGTTCCCTGTAGCTCCT+GGG 0.553971 2_4:-57212016 None:intergenic
GAATTCGGTGTCATCACACT+AGG 0.557489 2_4:-57209878 None:intergenic
AAGGGAGGTTCAGCATCCCA+TGG 0.557581 2_4:+57211124 Msa0337240:CDS
CACTCGACAAAGCCGGAAGT+GGG 0.558652 2_4:+57210218 Msa0337240:CDS
ATGTGCACTATGCAGGTCCC+AGG 0.560952 2_4:+57211999 Msa0337240:intron
TCCCTGTGGTGCCACTGCCG+CGG 0.562920 2_4:+57209810 Msa0337240:CDS
TGAAGCTAATTTATTTGGCA+CGG 0.569690 2_4:+57212403 Msa0337240:three_prime_UTR
ATGTGCTTTCGAATTCCCAT+GGG 0.571228 2_4:-57211140 None:intergenic
CCTTAGAAGTTAACCAGTGA+AGG 0.578996 2_4:-57212316 None:intergenic
TGAGAGGAATAGATTTCCAA+AGG 0.582356 2_4:+57212500 Msa0337240:three_prime_UTR
AACCTCCCTTGAAATCATAC+CGG 0.585348 2_4:-57211111 None:intergenic
TCAGGAGTTTCGAGTGACAG+AGG 0.587986 2_4:+57210280 Msa0337240:CDS
GTGATGTCAACATACTGTCC+GGG 0.588163 2_4:-57210350 None:intergenic
TGTTAAGATACTACACTGCA+AGG 0.596592 2_4:-57212427 None:intergenic
GATGGGGAAAATGAGTATTG+AGG 0.597201 2_4:+57212259 Msa0337240:three_prime_UTR
GGCACAAAGTAAGTTGGGAA+AGG 0.599353 2_4:-57212086 None:intergenic
GACCGGTATGATTTCAAGGG+AGG 0.601360 2_4:+57211109 Msa0337240:CDS
TCGAAAGCACATAGAACCAT+GGG 0.605881 2_4:+57211151 Msa0337240:CDS
GGACAGTATGTTGACATCAC+AGG 0.614169 2_4:+57210353 Msa0337240:CDS
AAATGCCGGGGAGAATGGGT+GGG 0.614539 2_4:+57211379 Msa0337240:CDS
AGGGAGGTTCAGCATCCCAT+GGG 0.616692 2_4:+57211125 Msa0337240:CDS
ATCCAGCAAGAAATTTGATG+TGG 0.622717 2_4:+57211442 Msa0337240:CDS
TTCGAAAGCACATAGAACCA+TGG 0.623227 2_4:+57211150 Msa0337240:CDS
AAGCATTCCTGAAGAACCCA+TGG 0.626684 2_4:-57211167 None:intergenic
ACCGCGGCAGTGGCACCACA+GGG 0.627605 2_4:-57209811 None:intergenic
TGCAGGTCCCAGGAGCTACA+GGG 0.631734 2_4:+57212009 Msa0337240:intron
ATGGACCGGTATGATTTCAA+GGG 0.635642 2_4:+57211106 Msa0337240:CDS
GGTGTTATAGCTGTAAAATG+TGG 0.647527 2_4:+57209911 Msa0337240:CDS
CAATGTTGTCATCAACCCAA+AGG 0.648583 2_4:-57209982 None:intergenic
TCGTCTACGGCAATTCCCTG+TGG 0.657376 2_4:+57209796 Msa0337240:CDS
TCCAGCAAGAAATTTGATGT+GGG 0.677547 2_4:+57211443 Msa0337240:CDS
TCCCCAAGATCAGCAACCAG+AGG 0.694021 2_4:-57212137 None:intergenic
CGGAGGTGGAGACTATACGG+AGG 0.753244 2_4:+57209843 Msa0337240:CDS
ACTGCACTTTGGGATAAATG+GGG 0.757943 2_4:+57209938 Msa0337240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAATTTATATTTAT+AGG + chr2_4:57210579-57210598 Msa0337240:intron 0.0%
!! ATATTAAAATAGATACAAAA+TGG - chr2_4:57211897-57211916 None:intergenic 10.0%
!! GTTTATAATGAATTATTAAG+CGG + chr2_4:57210088-57210107 Msa0337240:intron 15.0%
!! AAGAAAAAATACTAATCTAA+AGG - chr2_4:57211217-57211236 None:intergenic 15.0%
!! AAATATATTATCACAACTAT+AGG - chr2_4:57211328-57211347 None:intergenic 15.0%
!!! TTCTTTTATTTGAATATAGA+TGG + chr2_4:57212241-57212260 Msa0337240:three_prime_UTR 15.0%
!!! TCTTTTATTTGAATATAGAT+GGG + chr2_4:57212242-57212261 Msa0337240:three_prime_UTR 15.0%
!!! ACATGTTTGATATTTTGTTT+TGG + chr2_4:57210164-57210183 Msa0337240:intron 20.0%
!!! ATATTTTGTTTTGGTTAGAT+TGG + chr2_4:57210173-57210192 Msa0337240:intron 20.0%
!! ACAATTGAACAAATAAATAG+TGG - chr2_4:57210736-57210755 None:intergenic 20.0%
!!! TTTCCGATTTATTTACTTTT+GGG + chr2_4:57210760-57210779 Msa0337240:intron 20.0%
!!! TTTTAAAGGTAAAAAAATGC+CGG + chr2_4:57211365-57211384 Msa0337240:CDS 20.0%
!! AAAGAACAGTAAAAAATGTA+TGG + chr2_4:57211406-57211425 Msa0337240:CDS 20.0%
!! AAGAACAGTAAAAAATGTAT+GGG + chr2_4:57211407-57211426 Msa0337240:CDS 20.0%
!! AAATCGTATATAAAATTACC+TGG - chr2_4:57211476-57211495 None:intergenic 20.0%
!! ATTTATAAAATTGCAGCTAT+AGG + chr2_4:57211492-57211511 Msa0337240:intron 20.0%
!! AGGTAAATAAAATTTGAATG+AGG - chr2_4:57211649-57211668 None:intergenic 20.0%
!!! ATTCAAATTTTATTTACCTC+TGG + chr2_4:57211650-57211669 Msa0337240:intron 20.0%
!!! CTATCTTAGTTGATATTTTT+TGG - chr2_4:57211728-57211747 None:intergenic 20.0%
!! AAAATATCAACTAAGATAGT+TGG + chr2_4:57211729-57211748 Msa0337240:intron 20.0%
!! GCCAATTATTTATTAATAAC+TGG + chr2_4:57211917-57211936 Msa0337240:intron 20.0%
!! GCCAGTTATTAATAAATAAT+TGG - chr2_4:57211921-57211940 None:intergenic 20.0%
!!! CTTTTATTTGAATATAGATG+GGG + chr2_4:57212243-57212262 Msa0337240:three_prime_UTR 20.0%
!!! CAAATAAATTAGCTTCAAAA+AGG - chr2_4:57212400-57212419 None:intergenic 20.0%
!!! CTTTTTGAAGCTAATTTATT+TGG + chr2_4:57212398-57212417 Msa0337240:three_prime_UTR 20.0%
!!! TGTAGTATCTTAACAAATTT+TGG + chr2_4:57212435-57212454 Msa0337240:three_prime_UTR 20.0%
!!! ATATCACATATTTTAACCTT+TGG - chr2_4:57212519-57212538 None:intergenic 20.0%
!! TTCAACTTCTTAACTTATTA+TGG - chr2_4:57212575-57212594 None:intergenic 20.0%
! GAACTTAAAAATATACACGA+GGG - chr2_4:57210125-57210144 None:intergenic 25.0%
! TGAACTTAAAAATATACACG+AGG - chr2_4:57210126-57210145 None:intergenic 25.0%
!! ATGAGAAGTATATAGTATGA+GGG - chr2_4:57210418-57210437 None:intergenic 25.0%
!! AATGAGAAGTATATAGTATG+AGG - chr2_4:57210419-57210438 None:intergenic 25.0%
!! GTTTCCGATTTATTTACTTT+TGG + chr2_4:57210759-57210778 Msa0337240:intron 25.0%
! TTATAATCCATGTATGACTT+CGG + chr2_4:57210950-57210969 Msa0337240:intron 25.0%
! TCAAATTATCTTCTGTTTAC+AGG + chr2_4:57211078-57211097 Msa0337240:intron 25.0%
! CAAATTATCTTCTGTTTACA+GGG + chr2_4:57211079-57211098 Msa0337240:intron 25.0%
! TTTAAAGGTAAAAAAATGCC+GGG + chr2_4:57211366-57211385 Msa0337240:CDS 25.0%
! TAATAACTGGCCAAAATATT+TGG + chr2_4:57211930-57211949 Msa0337240:intron 25.0%
! CTTTAATCAGTAACCATAAA+TGG - chr2_4:57212170-57212189 None:intergenic 25.0%
! TAAAGAGATAGTTCAGAAAA+TGG + chr2_4:57212185-57212204 Msa0337240:exon 25.0%
! AAAGAGATAGTTCAGAAAAT+GGG + chr2_4:57212186-57212205 Msa0337240:exon 25.0%
!!! TCAGATTGTGATAGTTTTAA+AGG + chr2_4:57212471-57212490 Msa0337240:three_prime_UTR 25.0%
! TCTTAACTTATTATGGACAT+GGG - chr2_4:57212568-57212587 None:intergenic 25.0%
! TTCTTAACTTATTATGGACA+TGG - chr2_4:57212569-57212588 None:intergenic 25.0%
AGTTCCAATTTCTATCCTTT+GGG + chr2_4:57209967-57209986 Msa0337240:CDS 30.0%
AAGTATTATTAGACACAAGC+AGG - chr2_4:57210520-57210539 None:intergenic 30.0%
ATCCCAATTATGTAATCAAC+TGG - chr2_4:57210648-57210667 None:intergenic 30.0%
TCGCCCAAAAGTAAATAAAT+CGG - chr2_4:57210766-57210785 None:intergenic 30.0%
! CATTTTGTCGTTCAAATTTC+AGG - chr2_4:57210870-57210889 None:intergenic 30.0%
!!! TGTTGATTTTCATGCTTTCT+AGG + chr2_4:57210888-57210907 Msa0337240:intron 30.0%
!! GTTGATTTTCATGCTTTCTA+GGG + chr2_4:57210889-57210908 Msa0337240:intron 30.0%
! TTGATTTTCATGCTTTCTAG+GGG + chr2_4:57210890-57210909 Msa0337240:intron 30.0%
AGGACATAGATCTGTAAAAA+TGG - chr2_4:57211037-57211056 None:intergenic 30.0%
TTAACAGTCATGTAACTGAA+AGG - chr2_4:57211057-57211076 None:intergenic 30.0%
! TATATTTTTCCTCACTGTTC+AGG + chr2_4:57211341-57211360 Msa0337240:intron 30.0%
TTAAAGGTAAAAAAATGCCG+GGG + chr2_4:57211367-57211386 Msa0337240:CDS 30.0%
! AAGTATCCGAGTTTAAAACA+TGG + chr2_4:57211605-57211624 Msa0337240:intron 30.0%
!! TTTGAGCCATGTTTTAAACT+CGG - chr2_4:57211614-57211633 None:intergenic 30.0%
ATTTGAATGAGGATTGTTTC+AGG - chr2_4:57211638-57211657 None:intergenic 30.0%
!!! ATTTTTTGGTCTTAAACCTC+CGG - chr2_4:57211714-57211733 None:intergenic 30.0%
TACTGCAATGTGAATTAAGT+GGG - chr2_4:57211789-57211808 None:intergenic 30.0%
CGATATCATTAAGAAAACGA+TGG + chr2_4:57211860-57211879 Msa0337240:intron 30.0%
! AGCCAACATTCCAAATATTT+TGG - chr2_4:57211943-57211962 None:intergenic 30.0%
!!! AGAAAATGGGTTTTTTCGTT+AGG + chr2_4:57212199-57212218 Msa0337240:three_prime_UTR 30.0%
AAAAAATCATCCTTGGATTG+TGG - chr2_4:57212287-57212306 None:intergenic 30.0%
TCAAGTGAAAAAATCATCCT+TGG - chr2_4:57212294-57212313 None:intergenic 30.0%
TGAAGCTAATTTATTTGGCA+CGG + chr2_4:57212403-57212422 Msa0337240:three_prime_UTR 30.0%
! GGTGTTATAGCTGTAAAATG+TGG + chr2_4:57209911-57209930 Msa0337240:CDS 35.0%
GAGTTCCAATTTCTATCCTT+TGG + chr2_4:57209966-57209985 Msa0337240:CDS 35.0%
TCAACCCAAAGGATAGAAAT+TGG - chr2_4:57209974-57209993 None:intergenic 35.0%
ATTTGATCGAGAGAACGAAA+TGG - chr2_4:57210062-57210081 None:intergenic 35.0%
!!! TGTTTTGGTTAGATTGGTTG+TGG + chr2_4:57210179-57210198 Msa0337240:intron 35.0%
ACAGGAATCACTAAAGGAAA+AGG + chr2_4:57210371-57210390 Msa0337240:CDS 35.0%
! CACTAAAGGAAAAGGTTTTC+AGG + chr2_4:57210379-57210398 Msa0337240:CDS 35.0%
TTAAAACGAATTACCCCAAG+AGG + chr2_4:57210603-57210622 Msa0337240:intron 35.0%
ACGAAAAAAGCTATCCTCTT+GGG - chr2_4:57210620-57210639 None:intergenic 35.0%
TACGAAAAAAGCTATCCTCT+TGG - chr2_4:57210621-57210640 None:intergenic 35.0%
!!! AGAGGATAGCTTTTTTCGTA+AGG + chr2_4:57210621-57210640 Msa0337240:intron 35.0%
!!! GAGGATAGCTTTTTTCGTAA+GGG + chr2_4:57210622-57210641 Msa0337240:intron 35.0%
GGCCAGTTGATTACATAATT+GGG + chr2_4:57210643-57210662 Msa0337240:intron 35.0%
TTCAGTAGTTTCAACTGATC+AGG + chr2_4:57210795-57210814 Msa0337240:intron 35.0%
GGGAGGAGATAAAAGAATAA+CGG - chr2_4:57210831-57210850 None:intergenic 35.0%
TTGTCGTTCAAATTTCAGGA+GGG - chr2_4:57210866-57210885 None:intergenic 35.0%
TTTGTCGTTCAAATTTCAGG+AGG - chr2_4:57210867-57210886 None:intergenic 35.0%
! TGATTTTCATGCTTTCTAGG+GGG + chr2_4:57210891-57210910 Msa0337240:intron 35.0%
ATTTACTCGATGGAAGGTTT+CGG - chr2_4:57210994-57211013 None:intergenic 35.0%
AAACCTTCCATCGAGTAAAT+CGG + chr2_4:57210994-57211013 Msa0337240:intron 35.0%
! CTTTAAAAACCTGAACAGTG+AGG - chr2_4:57211353-57211372 None:intergenic 35.0%
!! CTCACTGTTCAGGTTTTTAA+AGG + chr2_4:57211351-57211370 Msa0337240:intron 35.0%
ATCCAGCAAGAAATTTGATG+TGG + chr2_4:57211442-57211461 Msa0337240:CDS 35.0%
TCCAGCAAGAAATTTGATGT+GGG + chr2_4:57211443-57211462 Msa0337240:CDS 35.0%
AGAAATTTGATGTGGGTGAA+AGG + chr2_4:57211450-57211469 Msa0337240:CDS 35.0%
TAAAATTGCAGCTATAGGAC+AGG + chr2_4:57211497-57211516 Msa0337240:intron 35.0%
!!! AGTTTTTTTTTTTCCCCGAG+GGG - chr2_4:57211536-57211555 None:intergenic 35.0%
!!! CAGTTTTTTTTTTTCCCCGA+GGG - chr2_4:57211537-57211556 None:intergenic 35.0%
!!! TCAGTTTTTTTTTTTCCCCG+AGG - chr2_4:57211538-57211557 None:intergenic 35.0%
! AAAAACTGATTCAACTCGAG+TGG + chr2_4:57211549-57211568 Msa0337240:intron 35.0%
GTACTGCAATGTGAATTAAG+TGG - chr2_4:57211790-57211809 None:intergenic 35.0%
! GGCCAAAATATTTGGAATGT+TGG + chr2_4:57211938-57211957 Msa0337240:intron 35.0%
!! TTTGGAATGTTGGCTTTATG+CGG + chr2_4:57211948-57211967 Msa0337240:intron 35.0%
! AAAGGAAGTATAGATGTCTC+AGG - chr2_4:57212071-57212090 None:intergenic 35.0%
TCATCTGTATCTTCATCTTC+TGG - chr2_4:57212110-57212129 None:intergenic 35.0%
TACAGATGATATGAAACCTC+TGG + chr2_4:57212121-57212140 Msa0337240:CDS 35.0%
!! AAGGTTGTTACTTTGAGACT+TGG + chr2_4:57212335-57212354 Msa0337240:three_prime_UTR 35.0%
!! GTTACTTTGAGACTTGGAAT+TGG + chr2_4:57212341-57212360 Msa0337240:three_prime_UTR 35.0%
TGTTAAGATACTACACTGCA+AGG - chr2_4:57212430-57212449 None:intergenic 35.0%
!!! GTTTTAAAGGACTACTTGAG+AGG + chr2_4:57212484-57212503 Msa0337240:three_prime_UTR 35.0%
TGAGAGGAATAGATTTCCAA+AGG + chr2_4:57212500-57212519 Msa0337240:three_prime_UTR 35.0%
ACACCAGTTCGTTGTGAATT+CGG - chr2_4:57209896-57209915 None:intergenic 40.0%
AATGTGGAATGACTGCACTT+TGG + chr2_4:57209927-57209946 Msa0337240:CDS 40.0%
ATGTGGAATGACTGCACTTT+GGG + chr2_4:57209928-57209947 Msa0337240:CDS 40.0%
!! TGACTGCACTTTGGGATAAA+TGG + chr2_4:57209936-57209955 Msa0337240:CDS 40.0%
!! GACTGCACTTTGGGATAAAT+GGG + chr2_4:57209937-57209956 Msa0337240:CDS 40.0%
!! ACTGCACTTTGGGATAAATG+GGG + chr2_4:57209938-57209957 Msa0337240:CDS 40.0%
CAATGTTGTCATCAACCCAA+AGG - chr2_4:57209985-57210004 None:intergenic 40.0%
TGATGACAACATTGTCTCTC+AGG + chr2_4:57209991-57210010 Msa0337240:CDS 40.0%
ACATTAAGCGATGTACCAAC+AGG - chr2_4:57210317-57210336 None:intergenic 40.0%
!! AATGTTCGCCATTTTGTTCC+CGG + chr2_4:57210332-57210351 Msa0337240:CDS 40.0%
TGTGATGTCAACATACTGTC+CGG - chr2_4:57210354-57210373 None:intergenic 40.0%
GACATCACAGGAATCACTAA+AGG + chr2_4:57210365-57210384 Msa0337240:CDS 40.0%
CGAAAAAAGCTATCCTCTTG+GGG - chr2_4:57210619-57210638 None:intergenic 40.0%
GGGCCAGTTGATTACATAAT+TGG + chr2_4:57210642-57210661 Msa0337240:intron 40.0%
TGTTTCGATCCACATCCAAT+TGG + chr2_4:57210674-57210693 Msa0337240:intron 40.0%
TATTACTGTTGCCGACCAAT+TGG - chr2_4:57210692-57210711 None:intergenic 40.0%
AATTGGTCGGCAACAGTAAT+AGG + chr2_4:57210691-57210710 Msa0337240:intron 40.0%
TCAGGAGGGGTCAAATAAAA+CGG - chr2_4:57210852-57210871 None:intergenic 40.0%
TGTCGTTCAAATTTCAGGAG+GGG - chr2_4:57210865-57210884 None:intergenic 40.0%
! GAAGTATCCGAAGTCATACA+TGG - chr2_4:57210960-57210979 None:intergenic 40.0%
AACCTTCCATCGAGTAAATC+GGG + chr2_4:57210995-57211014 Msa0337240:intron 40.0%
TAATTGCCCGATTTACTCGA+TGG - chr2_4:57211004-57211023 None:intergenic 40.0%
CTTCTGTTTACAGGGTGTAA+TGG + chr2_4:57211087-57211106 Msa0337240:intron 40.0%
AATGGACCGGTATGATTTCA+AGG + chr2_4:57211105-57211124 Msa0337240:CDS 40.0%
ATGGACCGGTATGATTTCAA+GGG + chr2_4:57211106-57211125 Msa0337240:CDS 40.0%
AACCTCCCTTGAAATCATAC+CGG - chr2_4:57211114-57211133 None:intergenic 40.0%
ATGTGCTTTCGAATTCCCAT+GGG - chr2_4:57211143-57211162 None:intergenic 40.0%
TATGTGCTTTCGAATTCCCA+TGG - chr2_4:57211144-57211163 None:intergenic 40.0%
! TTCGAAAGCACATAGAACCA+TGG + chr2_4:57211150-57211169 Msa0337240:CDS 40.0%
! TCGAAAGCACATAGAACCAT+GGG + chr2_4:57211151-57211170 Msa0337240:CDS 40.0%
TAAAAAAATGCCGGGGAGAA+TGG + chr2_4:57211374-57211393 Msa0337240:CDS 40.0%
AAAAAAATGCCGGGGAGAAT+GGG + chr2_4:57211375-57211394 Msa0337240:CDS 40.0%
ACCCACATCAAATTTCTTGC+TGG - chr2_4:57211447-57211466 None:intergenic 40.0%
! GGAACTATTTTGTATCCCCT+CGG + chr2_4:57211518-57211537 Msa0337240:intron 40.0%
! GAACTATTTTGTATCCCCTC+GGG + chr2_4:57211519-57211538 Msa0337240:intron 40.0%
! AACTATTTTGTATCCCCTCG+GGG + chr2_4:57211520-57211539 Msa0337240:intron 40.0%
TGGCTGAACTGTAGATTACT+AGG + chr2_4:57211670-57211689 Msa0337240:intron 40.0%
GGCTGAACTGTAGATTACTA+GGG + chr2_4:57211671-57211690 Msa0337240:intron 40.0%
!! TTGGAATGTTGGCTTTATGC+GGG + chr2_4:57211949-57211968 Msa0337240:intron 40.0%
TTGTATGATGTGCACTATGC+AGG + chr2_4:57211992-57212011 Msa0337240:intron 40.0%
CTTCTGGCACAAAGTAAGTT+GGG - chr2_4:57212094-57212113 None:intergenic 40.0%
TCTTCTGGCACAAAGTAAGT+TGG - chr2_4:57212095-57212114 None:intergenic 40.0%
! GATGGGGAAAATGAGTATTG+AGG + chr2_4:57212259-57212278 Msa0337240:three_prime_UTR 40.0%
! TATTGAGGTACCACAATCCA+AGG + chr2_4:57212274-57212293 Msa0337240:intron 40.0%
! TTTTCACTTGAGTCCTTCAC+TGG + chr2_4:57212303-57212322 Msa0337240:intron 40.0%
CCTTAGAAGTTAACCAGTGA+AGG - chr2_4:57212319-57212338 None:intergenic 40.0%
! CCTTCACTGGTTAACTTCTA+AGG + chr2_4:57212316-57212335 Msa0337240:three_prime_UTR 40.0%
!! GAATTCGGTGTCATCACACT+AGG - chr2_4:57209881-57209900 None:intergenic 45.0%
ACACCGAATTCACAACGAAC+TGG + chr2_4:57209890-57209909 Msa0337240:CDS 45.0%
TCAGGTCAAAACTCCTGAGA+AGG + chr2_4:57210009-57210028 Msa0337240:intron 45.0%
GTCAAAACTCCTGAGAAGGA+AGG + chr2_4:57210013-57210032 Msa0337240:intron 45.0%
GAACAATAGCCTTCCTTCTC+AGG - chr2_4:57210025-57210044 None:intergenic 45.0%
! GATTGGTTGTGGACAGAAGA+AGG + chr2_4:57210190-57210209 Msa0337240:intron 45.0%
TCCTGAAGCTTCCTCTTCAT+GGG - chr2_4:57210266-57210285 None:intergenic 45.0%
CATACTGTCCGGGAACAAAA+TGG - chr2_4:57210343-57210362 None:intergenic 45.0%
GTGATGTCAACATACTGTCC+GGG - chr2_4:57210353-57210372 None:intergenic 45.0%
GGACAGTATGTTGACATCAC+AGG + chr2_4:57210353-57210372 Msa0337240:CDS 45.0%
TCGATCCACATCCAATTGGT+CGG + chr2_4:57210678-57210697 Msa0337240:intron 45.0%
CAGGAGGGGTCAAATAAAAC+GGG - chr2_4:57210851-57210870 None:intergenic 45.0%
!! GTTTACAGGGTGTAATGGAC+CGG + chr2_4:57211092-57211111 Msa0337240:intron 45.0%
CATAGAACCATGGGTTCTTC+AGG + chr2_4:57211160-57211179 Msa0337240:CDS 45.0%
AAGCATTCCTGAAGAACCCA+TGG - chr2_4:57211170-57211189 None:intergenic 45.0%
ATGGGTTCTTCAGGAATGCT+TGG + chr2_4:57211169-57211188 Msa0337240:CDS 45.0%
AGGAATGCTTGGTCCTTGTA+AGG + chr2_4:57211180-57211199 Msa0337240:CDS 45.0%
ATGCTTGGTCCTTGTAAGGT+TGG + chr2_4:57211184-57211203 Msa0337240:intron 45.0%
TTGGTCCTTGTAAGGTTGGA+TGG + chr2_4:57211188-57211207 Msa0337240:intron 45.0%
GTAATCTACAGTTCAGCCAG+AGG - chr2_4:57211669-57211688 None:intergenic 45.0%
! GGCACAAAGTAAGTTGGGAA+AGG - chr2_4:57212089-57212108 None:intergenic 45.0%
AAACCTCTGGTTGCTGATCT+TGG + chr2_4:57212134-57212153 Msa0337240:CDS 45.0%
AACCTCTGGTTGCTGATCTT+GGG + chr2_4:57212135-57212154 Msa0337240:CDS 45.0%
TGGGGATGTGGATCCATTTA+TGG + chr2_4:57212154-57212173 Msa0337240:CDS 45.0%
!! TATTATTTATAAAGAAAAAA+AGG - chr2_4:57210442-57210461 None:intergenic 5.0%
!! ATAAAAAATTAAAATCATTA+TGG - chr2_4:57211755-57211774 None:intergenic 5.0%
!! GCTATGCTAGCGTTTTCGAG+AGG + chr2_4:57209764-57209783 Msa0337240:CDS 50.0%
!!! ACTGCCGCGGTTTTTGAGTT+CGG + chr2_4:57209823-57209842 Msa0337240:CDS 50.0%
ACCTCCGAACTCAAAAACCG+CGG - chr2_4:57209830-57209849 None:intergenic 50.0%
GTTCGGAGGTGGAGACTATA+CGG + chr2_4:57209840-57209859 Msa0337240:CDS 50.0%
GGAAGGCTATTGTTCTCTCC+AGG + chr2_4:57210030-57210049 Msa0337240:intron 50.0%
AGAACGAAATGGAACGCACC+TGG - chr2_4:57210051-57210070 None:intergenic 50.0%
GGAGAAACACTCGACAAAGC+CGG + chr2_4:57210211-57210230 Msa0337240:CDS 50.0%
!! AGCCGGAAGTGGGTCATTTT+AGG + chr2_4:57210228-57210247 Msa0337240:CDS 50.0%
!! GCCGGAAGTGGGTCATTTTA+GGG + chr2_4:57210229-57210248 Msa0337240:CDS 50.0%
GCCCTAAAATGACCCACTTC+CGG - chr2_4:57210233-57210252 None:intergenic 50.0%
!!! GTGGGTCATTTTAGGGCTCA+AGG + chr2_4:57210236-57210255 Msa0337240:CDS 50.0%
CTCAAGGAGTTCCCATGAAG+AGG + chr2_4:57210252-57210271 Msa0337240:CDS 50.0%
TCCCATGAAGAGGAAGCTTC+AGG + chr2_4:57210262-57210281 Msa0337240:CDS 50.0%
CTCCTGAAGCTTCCTCTTCA+TGG - chr2_4:57210267-57210286 None:intergenic 50.0%
! TCAGGAGTTTCGAGTGACAG+AGG + chr2_4:57210280-57210299 Msa0337240:CDS 50.0%
GAGGATGCACTTCTTCCTGT+TGG + chr2_4:57210299-57210318 Msa0337240:CDS 50.0%
TGTTGCCGACCAATTGGATG+TGG - chr2_4:57210686-57210705 None:intergenic 50.0%
GAGGGGTCAAATAAAACGGG+AGG - chr2_4:57210848-57210867 None:intergenic 50.0%
TGCCCGATTTACTCGATGGA+AGG - chr2_4:57211000-57211019 None:intergenic 50.0%
GACCGGTATGATTTCAAGGG+AGG + chr2_4:57211109-57211128 Msa0337240:CDS 50.0%
GGACTCCATCCAACCTTACA+AGG - chr2_4:57211196-57211215 None:intergenic 50.0%
TTTGATGTGGGTGAAAGGCC+AGG + chr2_4:57211455-57211474 Msa0337240:CDS 50.0%
TACTAGGGTTCCTTCCCTCA+CGG + chr2_4:57211686-57211705 Msa0337240:intron 50.0%
TTAAACCTCCGGTTCCGTGA+GGG - chr2_4:57211703-57211722 None:intergenic 50.0%
CAAAGTTCCCTGTAGCTCCT+GGG - chr2_4:57212019-57212038 None:intergenic 50.0%
ACAAAGTTCCCTGTAGCTCC+TGG - chr2_4:57212020-57212039 None:intergenic 50.0%
ACCTCTGGTTGCTGATCTTG+GGG + chr2_4:57212136-57212155 Msa0337240:CDS 50.0%
GAGGCGTGGTTTCTCGTCTA+CGG + chr2_4:57209783-57209802 Msa0337240:CDS 55.0%
TCGTCTACGGCAATTCCCTG+TGG + chr2_4:57209796-57209815 Msa0337240:CDS 55.0%
GAACTCAAAAACCGCGGCAG+TGG - chr2_4:57209824-57209843 None:intergenic 55.0%
!!! GCGGTTTTTGAGTTCGGAGG+TGG + chr2_4:57209829-57209848 Msa0337240:CDS 55.0%
ACACTCGACAAAGCCGGAAG+TGG + chr2_4:57210217-57210236 Msa0337240:CDS 55.0%
CACTCGACAAAGCCGGAAGT+GGG + chr2_4:57210218-57210237 Msa0337240:CDS 55.0%
AAGGGAGGTTCAGCATCCCA+TGG + chr2_4:57211124-57211143 Msa0337240:CDS 55.0%
AGGGAGGTTCAGCATCCCAT+GGG + chr2_4:57211125-57211144 Msa0337240:CDS 55.0%
AAAATGCCGGGGAGAATGGG+TGG + chr2_4:57211378-57211397 Msa0337240:CDS 55.0%
AAATGCCGGGGAGAATGGGT+GGG + chr2_4:57211379-57211398 Msa0337240:CDS 55.0%
CTTAAACCTCCGGTTCCGTG+AGG - chr2_4:57211704-57211723 None:intergenic 55.0%
ATGTGCACTATGCAGGTCCC+AGG + chr2_4:57211999-57212018 Msa0337240:intron 55.0%
TCCCCAAGATCAGCAACCAG+AGG - chr2_4:57212140-57212159 None:intergenic 55.0%
GGTTGCTGATCTTGGGGATG+TGG + chr2_4:57212142-57212161 Msa0337240:CDS 55.0%
!! GCTAGCGTTTTCGAGAGGCG+TGG + chr2_4:57209769-57209788 Msa0337240:CDS 60.0%
!!! GCCGCGGTTTTTGAGTTCGG+AGG + chr2_4:57209826-57209845 Msa0337240:CDS 60.0%
CGGAGGTGGAGACTATACGG+AGG + chr2_4:57209843-57209862 Msa0337240:CDS 60.0%
TGCTTCCCACCCATTCTCCC+CGG - chr2_4:57211387-57211406 None:intergenic 60.0%
GGTTCCTTCCCTCACGGAAC+CGG + chr2_4:57211692-57211711 Msa0337240:intron 60.0%
ATGCAGGTCCCAGGAGCTAC+AGG + chr2_4:57212008-57212027 Msa0337240:intron 60.0%
TGCAGGTCCCAGGAGCTACA+GGG + chr2_4:57212009-57212028 Msa0337240:intron 60.0%
TCCTTCCCTCACGGAACCGG+AGG + chr2_4:57211695-57211714 Msa0337240:intron 65.0%
ACCTCCGGTTCCGTGAGGGA+AGG - chr2_4:57211699-57211718 None:intergenic 65.0%
!! TCCCTGTGGTGCCACTGCCG+CGG + chr2_4:57209810-57209829 Msa0337240:CDS 70.0%
ACCGCGGCAGTGGCACCACA+GGG - chr2_4:57209814-57209833 None:intergenic 70.0%
AACCGCGGCAGTGGCACCAC+AGG - chr2_4:57209815-57209834 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 57209761 57212609 57209761 ID=Msa0337240;Name=Msa0337240
chr2_4 mRNA 57209761 57212609 57209761 ID=Msa0337240-mRNA-1;Parent=Msa0337240;Name=Msa0337240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.8|0.83|1|0.8|0.66|6|400|283
chr2_4 exon 57209761 57210012 57209761 ID=Msa0337240-mRNA-1:exon:17394;Parent=Msa0337240-mRNA-1
chr2_4 exon 57210191 57210400 57210191 ID=Msa0337240-mRNA-1:exon:17395;Parent=Msa0337240-mRNA-1
chr2_4 exon 57211100 57211201 57211100 ID=Msa0337240-mRNA-1:exon:17396;Parent=Msa0337240-mRNA-1
chr2_4 exon 57211363 57211476 57211363 ID=Msa0337240-mRNA-1:exon:17397;Parent=Msa0337240-mRNA-1
chr2_4 exon 57212014 57212290 57212014 ID=Msa0337240-mRNA-1:exon:17398;Parent=Msa0337240-mRNA-1
chr2_4 exon 57212313 57212609 57212313 ID=Msa0337240-mRNA-1:exon:17399;Parent=Msa0337240-mRNA-1
chr2_4 CDS 57209761 57210012 57209761 ID=Msa0337240-mRNA-1:cds;Parent=Msa0337240-mRNA-1
chr2_4 CDS 57210191 57210400 57210191 ID=Msa0337240-mRNA-1:cds;Parent=Msa0337240-mRNA-1
chr2_4 CDS 57211100 57211201 57211100 ID=Msa0337240-mRNA-1:cds;Parent=Msa0337240-mRNA-1
chr2_4 CDS 57211363 57211476 57211363 ID=Msa0337240-mRNA-1:cds;Parent=Msa0337240-mRNA-1
chr2_4 CDS 57212014 57212187 57212014 ID=Msa0337240-mRNA-1:cds;Parent=Msa0337240-mRNA-1
chr2_4 three_prime_UTR 57212188 57212290 57212188 ID=Msa0337240-mRNA-1:three_prime_utr;Parent=Msa0337240-mRNA-1
chr2_4 three_prime_UTR 57212313 57212609 57212313 ID=Msa0337240-mRNA-1:three_prime_utr;Parent=Msa0337240-mRNA-1
Gene Sequence

>Msa0337240

GTTGCTATGCTAGCGTTTTCGAGAGGCGTGGTTTCTCGTCTACGGCAATTCCCTGTGGTGCCACTGCCGCGGTTTTTGAGTTCGGAGGTGGAGACTATACGGAGGATTGAAGCAAAACCTAGTGTGATGACACCGAATTCACAACGAACTGGTGTTATAGCTGTAAAATGTGGAATGACTGCACTTTGGGATAAATGGGGTGCTAGAGTTCCAATTTCTATCCTTTGGGTTGATGACAACATTGTCTCTCAGATTGGTTGTGGACAGAAGAAGGAGAAACACTCGACAAAGCCGGAAGTGGGTCATTTTAGGGCTCAAGGAGTTCCCATGAAGAGGAAGCTTCAGGAGTTTCGAGTGACAGAGGATGCACTTCTTCCTGTTGGTACATCGCTTAATGTTCGCCATTTTGTTCCCGGACAGTATGTTGACATCACAGGAATCACTAAAGGAAAAGGTTTTCAGGGTGTAATGGACCGGTATGATTTCAAGGGAGGTTCAGCATCCCATGGGAATTCGAAAGCACATAGAACCATGGGTTCTTCAGGAATGCTTGGTCCTTGTAAGGTTTTTAAAGGTAAAAAAATGCCGGGGAGAATGGGTGGGAAGCAAAGAACAGTAAAAAATGTATGGGTCTACAAAATTGATCCAGCAAGAAATTTGATGTGGGTGAAAGGCCAGGTCCCAGGAGCTACAGGGAACTTTGTTTTTATAAAAGATGCAGTTTATGAAAAACCTGAGACATCTATACTTCCTTTCCCAACTTACTTTGTGCCAGAAGATGAAGATACAGATGATATGAAACCTCTGGTTGCTGATCTTGGGGATGTGGATCCATTTATGGTTACTGATTAA

Protein sequence

>Msa0337240

VAMLAFSRGVVSRLRQFPVVPLPRFLSSEVETIRRIEAKPSVMTPNSQRTGVIAVKCGMTALWDKWGARVPISILWVDDNIVSQIGCGQKKEKHSTKPEVGHFRAQGVPMKRKLQEFRVTEDALLPVGTSLNVRHFVPGQYVDITGITKGKGFQGVMDRYDFKGGSASHGNSKAHRTMGSSGMLGPCKVFKGKKMPGRMGGKQRTVKNVWVYKIDPARNLMWVKGQVPGATGNFVFIKDAVYEKPETSILPFPTYFVPEDEDTDDMKPLVADLGDVDPFMVTD*