Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403420 | XP_003604201.1 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 4.76e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403420 | sp|Q8W487|YB95_ARATH | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 7.30e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403420 | G7JD84 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 2.27e-145 | 414 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa1403420 | 0.834532 | 2.839428e-56 | -8.615850e-47 |
| Msa0025730 | Msa1403420 | 0.803030 | 4.235130e-49 | -8.615850e-47 |
| Msa0027260 | Msa1403420 | 0.809666 | 1.690349e-50 | -8.615850e-47 |
| Msa0029270 | Msa1403420 | 0.809472 | 1.860193e-50 | -8.615850e-47 |
| Msa0030200 | Msa1403420 | 0.813335 | 2.696998e-51 | -8.615850e-47 |
| Msa0032580 | Msa1403420 | 0.830662 | 2.588851e-55 | -8.615850e-47 |
| Msa0033130 | Msa1403420 | 0.829952 | 3.859424e-55 | -8.615850e-47 |
| Msa0033950 | Msa1403420 | 0.823270 | 1.516364e-53 | -8.615850e-47 |
| Msa0034030 | Msa1403420 | 0.812950 | 3.275335e-51 | -8.615850e-47 |
| Msa0043660 | Msa1403420 | 0.844226 | 8.619012e-59 | -8.615850e-47 |
| Msa0048550 | Msa1403420 | 0.821719 | 3.477734e-53 | -8.615850e-47 |
| Msa0054480 | Msa1403420 | 0.820161 | 7.937616e-53 | -8.615850e-47 |
| Msa0055180 | Msa1403420 | 0.812543 | 4.020474e-51 | -8.615850e-47 |
| Msa0061080 | Msa1403420 | 0.822091 | 2.850727e-53 | -8.615850e-47 |
| Msa0063530 | Msa1403420 | 0.814467 | 1.517961e-51 | -8.615850e-47 |
| Msa0067630 | Msa1403420 | 0.814154 | 1.779759e-51 | -8.615850e-47 |
| Msa0070700 | Msa1403420 | 0.838811 | 2.304115e-57 | -8.615850e-47 |
| Msa0079820 | Msa1403420 | 0.826139 | 3.195569e-54 | -8.615850e-47 |
| Msa0105620 | Msa1403420 | 0.832020 | 1.199496e-55 | -8.615850e-47 |
| Msa0115130 | Msa1403420 | 0.806581 | 7.672957e-50 | -8.615850e-47 |
| Msa0115400 | Msa1403420 | 0.805940 | 1.047416e-49 | -8.615850e-47 |
| Msa0118590 | Msa1403420 | 0.829618 | 4.654246e-55 | -8.615850e-47 |
| Msa1358250 | Msa1403420 | 0.851898 | 6.574804e-61 | -8.615850e-47 |
| Msa1384190 | Msa1403420 | 0.822782 | 1.970491e-53 | -8.615850e-47 |
| Msa1384880 | Msa1403420 | 0.803347 | 3.640629e-49 | -8.615850e-47 |
| Msa1392780 | Msa1403420 | 0.849854 | 2.475421e-60 | -8.615850e-47 |
| Msa1394290 | Msa1403420 | 0.810388 | 1.181753e-50 | -8.615850e-47 |
| Msa1400220 | Msa1403420 | 0.816563 | 5.185314e-52 | -8.615850e-47 |
| Msa1400580 | Msa1403420 | 0.802197 | 6.289664e-49 | -8.615850e-47 |
| Msa1403420 | Msa1406570 | 0.802054 | 6.728336e-49 | -8.615850e-47 |
| Msa1403420 | Msa1419870 | 0.811273 | 7.601608e-51 | -8.615850e-47 |
| Msa1403420 | Msa1429120 | 0.822750 | 2.004039e-53 | -8.615850e-47 |
| Msa1403420 | Msa1430120 | 0.806492 | 8.014191e-50 | -8.615850e-47 |
| Msa1403420 | Msa1457920 | 0.837649 | 4.589196e-57 | -8.615850e-47 |
| Msa1403420 | Msa1460740 | 0.806532 | 7.860428e-50 | -8.615850e-47 |
| Msa0625680 | Msa1403420 | 0.828366 | 9.357462e-55 | -8.615850e-47 |
| Msa0643560 | Msa1403420 | 0.802821 | 4.676350e-49 | -8.615850e-47 |
| Msa0649020 | Msa1403420 | 0.806449 | 8.180752e-50 | -8.615850e-47 |
| Msa0660490 | Msa1403420 | 0.883791 | 3.327085e-71 | -8.615850e-47 |
| Msa0685140 | Msa1403420 | 0.818751 | 1.664319e-52 | -8.615850e-47 |
| Msa0689260 | Msa1403420 | 0.853573 | 2.184969e-61 | -8.615850e-47 |
| Msa0692830 | Msa1403420 | 0.802298 | 5.994269e-49 | -8.615850e-47 |
| Msa0692950 | Msa1403420 | 0.808024 | 3.793876e-50 | -8.615850e-47 |
| Msa0709040 | Msa1403420 | 0.804200 | 2.421252e-49 | -8.615850e-47 |
| Msa0711780 | Msa1403420 | 0.825411 | 4.757478e-54 | -8.615850e-47 |
| Msa0715650 | Msa1403420 | 0.805333 | 1.404521e-49 | -8.615850e-47 |
| Msa0715700 | Msa1403420 | 0.839442 | 1.580400e-57 | -8.615850e-47 |
| Msa0719420 | Msa1403420 | 0.807550 | 4.786101e-50 | -8.615850e-47 |
| Msa0754380 | Msa1403420 | 0.832659 | 8.334569e-56 | -8.615850e-47 |
| Msa0772480 | Msa1403420 | 0.812683 | 3.748038e-51 | -8.615850e-47 |
| Msa0789680 | Msa1403420 | 0.811959 | 5.392907e-51 | -8.615850e-47 |
| Msa0793800 | Msa1403420 | 0.844298 | 8.244624e-59 | -8.615850e-47 |
| Msa0794670 | Msa1403420 | 0.814071 | 1.857243e-51 | -8.615850e-47 |
| Msa0798440 | Msa1403420 | 0.811649 | 6.298141e-51 | -8.615850e-47 |
| Msa0802410 | Msa1403420 | 0.814016 | 1.909535e-51 | -8.615850e-47 |
| Msa0830540 | Msa1403420 | 0.802576 | 5.254339e-49 | -8.615850e-47 |
| Msa0831530 | Msa1403420 | 0.824741 | 6.849949e-54 | -8.615850e-47 |
| Msa0123360 | Msa1403420 | 0.823222 | 1.555373e-53 | -8.615850e-47 |
| Msa0127050 | Msa1403420 | 0.805226 | 1.478859e-49 | -8.615850e-47 |
| Msa0137550 | Msa1403420 | 0.857305 | 1.787295e-62 | -8.615850e-47 |
| Msa0139350 | Msa1403420 | 0.832252 | 1.051335e-55 | -8.615850e-47 |
| Msa0144370 | Msa1403420 | 0.847893 | 8.665575e-60 | -8.615850e-47 |
| Msa0145730 | Msa1403420 | 0.803496 | 3.390938e-49 | -8.615850e-47 |
| Msa0150820 | Msa1403420 | 0.810877 | 9.262494e-51 | -8.615850e-47 |
| Msa0159170 | Msa1403420 | 0.853166 | 2.860236e-61 | -8.615850e-47 |
| Msa0159340 | Msa1403420 | 0.805266 | 1.450627e-49 | -8.615850e-47 |
| Msa0160550 | Msa1403420 | 0.828424 | 9.062232e-55 | -8.615850e-47 |
| Msa0165660 | Msa1403420 | 0.856482 | 3.122714e-62 | -8.615850e-47 |
| Msa0168230 | Msa1403420 | 0.844533 | 7.128579e-59 | -8.615850e-47 |
| Msa0169310 | Msa1403420 | 0.803336 | 3.659832e-49 | -8.615850e-47 |
| Msa0170200 | Msa1403420 | 0.808057 | 3.733146e-50 | -8.615850e-47 |
| Msa0172970 | Msa1403420 | 0.828958 | 6.728655e-55 | -8.615850e-47 |
| Msa0187120 | Msa1403420 | 0.827471 | 1.536168e-54 | -8.615850e-47 |
| Msa0189300 | Msa1403420 | 0.800864 | 1.179989e-48 | -8.615850e-47 |
| Msa0220720 | Msa1403420 | 0.873245 | 1.707600e-67 | -8.615850e-47 |
| Msa1224810 | Msa1403420 | 0.828970 | 6.686580e-55 | -8.615850e-47 |
| Msa1245930 | Msa1403420 | 0.804868 | 1.757261e-49 | -8.615850e-47 |
| Msa1259060 | Msa1403420 | 0.802057 | 6.720333e-49 | -8.615850e-47 |
| Msa1260320 | Msa1403420 | 0.834746 | 2.507385e-56 | -8.615850e-47 |
| Msa1263750 | Msa1403420 | 0.804464 | 2.133879e-49 | -8.615850e-47 |
| Msa1333010 | Msa1403420 | 0.820062 | 8.364541e-53 | -8.615850e-47 |
| Msa0385580 | Msa1403420 | 0.806859 | 6.702369e-50 | -8.615850e-47 |
| Msa0388700 | Msa1403420 | 0.818168 | 2.256161e-52 | -8.615850e-47 |
| Msa0397540 | Msa1403420 | 0.802752 | 4.832011e-49 | -8.615850e-47 |
| Msa0398810 | Msa1403420 | 0.813703 | 2.237874e-51 | -8.615850e-47 |
| Msa0402650 | Msa1403420 | 0.825793 | 3.862820e-54 | -8.615850e-47 |
| Msa0402790 | Msa1403420 | 0.831228 | 1.879577e-55 | -8.615850e-47 |
| Msa0428060 | Msa1403420 | 0.803938 | 2.745282e-49 | -8.615850e-47 |
| Msa0449210 | Msa1403420 | 0.858433 | 8.263912e-63 | -8.615850e-47 |
| Msa0482130 | Msa1403420 | 0.824875 | 6.367595e-54 | -8.615850e-47 |
| Msa0989540 | Msa1403420 | 0.805913 | 1.060898e-49 | -8.615850e-47 |
| Msa1009820 | Msa1403420 | 0.856485 | 3.116704e-62 | -8.615850e-47 |
| Msa1051200 | Msa1403420 | 0.872915 | 2.202221e-67 | -8.615850e-47 |
| Msa1081930 | Msa1403420 | 0.804469 | 2.127771e-49 | -8.615850e-47 |
| Msa1082810 | Msa1403420 | 0.810344 | 1.207931e-50 | -8.615850e-47 |
| Msa1097920 | Msa1403420 | 0.800980 | 1.117085e-48 | -8.615850e-47 |
| Msa1106700 | Msa1403420 | 0.803894 | 2.803819e-49 | -8.615850e-47 |
| Msa0262050 | Msa1403420 | 0.835353 | 1.762680e-56 | -8.615850e-47 |
| Msa0262310 | Msa1403420 | 0.806836 | 6.779284e-50 | -8.615850e-47 |
| Msa0279700 | Msa1403420 | 0.809054 | 2.287176e-50 | -8.615850e-47 |
| Msa0299870 | Msa1403420 | 0.859639 | 3.598957e-63 | -8.615850e-47 |
| Msa0309750 | Msa1403420 | 0.834908 | 2.283258e-56 | -8.615850e-47 |
| Msa0325590 | Msa1403420 | 0.813349 | 2.677615e-51 | -8.615850e-47 |
| Msa0337240 | Msa1403420 | 0.872094 | 4.141305e-67 | -8.615850e-47 |
| Msa0345350 | Msa1403420 | 0.802975 | 4.346331e-49 | -8.615850e-47 |
| Msa0351990 | Msa1403420 | 0.800375 | 1.484499e-48 | -8.615850e-47 |
| Msa1137700 | Msa1403420 | 0.862108 | 6.398473e-64 | -8.615850e-47 |
| Msa1138880 | Msa1403420 | 0.816523 | 5.292729e-52 | -8.615850e-47 |
| Msa1153060 | Msa1403420 | 0.840566 | 8.051806e-58 | -8.615850e-47 |
| Msa1160590 | Msa1403420 | 0.822089 | 2.855115e-53 | -8.615850e-47 |
| Msa1174470 | Msa1403420 | 0.803123 | 4.051232e-49 | -8.615850e-47 |
| Msa1181250 | Msa1403420 | 0.828498 | 8.696268e-55 | -8.615850e-47 |
| Msa1181330 | Msa1403420 | 0.824545 | 7.617809e-54 | -8.615850e-47 |
| Msa1209260 | Msa1403420 | 0.819728 | 9.973879e-53 | -8.615850e-47 |
| Msa1218730 | Msa1403420 | 0.803132 | 4.033319e-49 | -8.615850e-47 |
| Msa0493410 | Msa1403420 | 0.856743 | 2.617195e-62 | -8.615850e-47 |
| Msa0497210 | Msa1403420 | 0.817144 | 3.839409e-52 | -8.615850e-47 |
| Msa0497490 | Msa1403420 | 0.823768 | 1.159552e-53 | -8.615850e-47 |
| Msa0516260 | Msa1403420 | 0.815406 | 9.398639e-52 | -8.615850e-47 |
| Msa0529830 | Msa1403420 | 0.898358 | 5.738504e-77 | -8.615850e-47 |
| Msa0542090 | Msa1403420 | 0.844208 | 8.716122e-59 | -8.615850e-47 |
| Msa0542130 | Msa1403420 | 0.842684 | 2.225362e-58 | -8.615850e-47 |
| Msa0566100 | Msa1403420 | 0.820882 | 5.423486e-53 | -8.615850e-47 |
| Msa0585510 | Msa1403420 | 0.986285 | 2.787149e-166 | -8.615850e-47 |
| Msa0869130 | Msa1403420 | 0.807799 | 4.236936e-50 | -8.615850e-47 |
| Msa0876800 | Msa1403420 | 0.808996 | 2.353508e-50 | -8.615850e-47 |
| Msa0932840 | Msa1403420 | 0.810803 | 9.611168e-51 | -8.615850e-47 |
| Msa0945440 | Msa1403420 | 0.821572 | 3.759315e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403420 | MtrunA17_Chr4g0001071 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 4.38e-149 | 414 |
| Msa1403420 | MtrunA17_Chr1g0149801 | 44.503 | 191 | 102 | 4 | 45 | 233 | 45 | 233 | 2.24e-56 | 179 |
| Msa1403420 | MtrunA17_Chr5g0435861 | 38.506 | 174 | 91 | 4 | 74 | 232 | 82 | 254 | 1.14e-29 | 111 |
| Msa1403420 | MtrunA17_Chr7g0239661 | 33.175 | 211 | 127 | 5 | 33 | 233 | 48 | 254 | 4.74e-29 | 109 |
| Msa1403420 | MtrunA17_Chr5g0444341 | 25.434 | 173 | 111 | 6 | 69 | 234 | 54 | 215 | 1.24e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403420 | AT1G15870.1 | 52.653 | 245 | 102 | 5 | 1 | 234 | 1 | 242 | 6.23e-85 | 253 |
| Msa1403420 | AT1G80720.2 | 53.252 | 246 | 99 | 7 | 1 | 234 | 1 | 242 | 5.91e-81 | 243 |
| Msa1403420 | AT1G80720.1 | 58.763 | 194 | 74 | 4 | 43 | 234 | 1 | 190 | 2.70e-75 | 226 |
| Msa1403420 | AT4G31930.1 | 39.496 | 238 | 135 | 6 | 1 | 233 | 1 | 234 | 1.07e-51 | 167 |
| Msa1403420 | AT2G39795.1 | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 7.42e-27 | 104 |
| Msa1403420 | AT3G55605.1 | 34.146 | 164 | 96 | 3 | 80 | 233 | 97 | 258 | 1.74e-25 | 100 |
| Msa1403420 | AT5G02050.1 | 29.952 | 207 | 130 | 6 | 41 | 233 | 62 | 267 | 2.64e-24 | 97.8 |
| Msa1403420 | AT5G05990.1 | 27.976 | 168 | 106 | 2 | 80 | 232 | 91 | 258 | 7.98e-20 | 85.9 |
| Msa1403420 | AT2G39790.1 | 27.149 | 221 | 146 | 6 | 18 | 232 | 28 | 239 | 1.48e-17 | 79.3 |
| Msa1403420 | AT4G32605.1 | 31.183 | 93 | 59 | 2 | 146 | 233 | 127 | 219 | 9.68e-13 | 65.9 |
Find 71 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTGACCATATTGTATTTA+TGG | 0.150777 | tig0022956:-32157 | Msa1403420:three_prime_UTR |
| ACTTAGAAGATTCTACTTAT+TGG | 0.210228 | tig0022956:-31939 | Msa1403420:three_prime_UTR |
| TTGGGAGATGTAAGTTCTTC+TGG | 0.225637 | tig0022956:+35591 | None:intergenic |
| CGAAAGCTTCTTTGCGCATT+TGG | 0.227889 | tig0022956:+35572 | None:intergenic |
| CTTGGAGATATTGACAATTA+AGG | 0.236484 | tig0022956:+32858 | None:intergenic |
| ATTTGCCAATGAAAACATTA+AGG | 0.265158 | tig0022956:-32968 | Msa1403420:CDS |
| AATGGGAATTTGGTTGATTA+GGG | 0.289613 | tig0022956:+35663 | None:intergenic |
| GAATGGGAATTTGGTTGATT+AGG | 0.302269 | tig0022956:+35662 | None:intergenic |
| CGGACAGTATAGTGATAAAA+AGG | 0.337671 | tig0022956:-32795 | Msa1403420:CDS |
| TTAGAAGTAGAAATTGTATA+AGG | 0.337923 | tig0022956:-32188 | Msa1403420:three_prime_UTR |
| GGATAGTCTTTACGATTTCT+TGG | 0.338117 | tig0022956:-32441 | Msa1403420:CDS |
| GTTGTTGTTGAATGGGAATT+TGG | 0.349399 | tig0022956:+35653 | None:intergenic |
| GTTGAAGCCACCATGTTTGA+TGG | 0.365174 | tig0022956:-32946 | Msa1403420:CDS |
| TTTACGATTTCTTGGAAGTA+AGG | 0.369810 | tig0022956:-32433 | Msa1403420:CDS |
| GTTGATTCTTTACAGGGAAC+TGG | 0.376425 | tig0022956:-32477 | Msa1403420:intron |
| GAAAGCTTCTTTGCGCATTT+GGG | 0.378478 | tig0022956:+35573 | None:intergenic |
| GGAACTGGATGATGAGTTGC+AGG | 0.401530 | tig0022956:-32462 | Msa1403420:CDS |
| TAGATTGATTCATTTCCATT+TGG | 0.404110 | tig0022956:-35765 | Msa1403420:five_prime_UTR |
| AATCATGTGCTCTGCTTGGC+CGG | 0.413847 | tig0022956:-32815 | Msa1403420:CDS |
| AGAAATTGTATAAGGTAAGT+AGG | 0.421027 | tig0022956:-32180 | Msa1403420:three_prime_UTR |
| AATTTCATTACGAAGAAGTC+TGG | 0.426508 | tig0022956:+35537 | None:intergenic |
| TTCGGTTCATTTGTGGTGGA+TGG | 0.428242 | tig0022956:-33027 | Msa1403420:CDS |
| TGACAAGTTCGGTTCATTTG+TGG | 0.433809 | tig0022956:-33034 | Msa1403420:CDS |
| CTGTTCTGTCAATTAAATCA+AGG | 0.444750 | tig0022956:+31882 | None:intergenic |
| GCATAGTCGTTGTTGTTGAA+TGG | 0.459987 | tig0022956:+35645 | None:intergenic |
| CACGCGTTTCTCTTTGGGAA+AGG | 0.466093 | tig0022956:+32117 | None:intergenic |
| CTGGAGATGATTTGAGAAGA+AGG | 0.473022 | tig0022956:+35610 | None:intergenic |
| TTGCAGCCTACTGACAAGTT+CGG | 0.474006 | tig0022956:-33045 | Msa1403420:intron |
| AATGTAATCCATCGCTCACC+GGG | 0.484386 | tig0022956:+33000 | None:intergenic |
| AAGTAAACTTACTCAAAGTC+AGG | 0.487021 | tig0022956:+32724 | None:intergenic |
| ACTGAAGTCTATTTCAAAGA+AGG | 0.490124 | tig0022956:-32240 | Msa1403420:three_prime_UTR |
| CAATGTAATCCATCGCTCAC+CGG | 0.493071 | tig0022956:+32999 | None:intergenic |
| TAGGATTTATAATAACCAAA+TGG | 0.496644 | tig0022956:+35750 | None:intergenic |
| CTCAAAGTCAGGACCAGCAT+AGG | 0.500380 | tig0022956:+32735 | None:intergenic |
| CATAGTCGTTGTTGTTGAAT+GGG | 0.501011 | tig0022956:+35646 | None:intergenic |
| CAAGGGAGATGGTCATGTGC+TGG | 0.502080 | tig0022956:-32839 | Msa1403420:CDS |
| CAGCACATGACCATCTCCCT+TGG | 0.512206 | tig0022956:+32840 | None:intergenic |
| AACAGAGATCATAGGATGGA+TGG | 0.515569 | tig0022956:-32354 | Msa1403420:CDS |
| AAGGAGAAAACAGAGATCAT+AGG | 0.519039 | tig0022956:-32362 | Msa1403420:CDS |
| GTCAATATCTCCAAGGGAGA+TGG | 0.521988 | tig0022956:-32850 | Msa1403420:CDS |
| TTACGATTTCTTGGAAGTAA+GGG | 0.523724 | tig0022956:-32432 | Msa1403420:CDS |
| TGGAAATCATGTGCTCTGCT+TGG | 0.524404 | tig0022956:-32819 | Msa1403420:CDS |
| CGGAACAAACGTGCCATTGG+AGG | 0.526107 | tig0022956:+35700 | None:intergenic |
| GAACGGAACAAACGTGCCAT+TGG | 0.527520 | tig0022956:+35697 | None:intergenic |
| CAAGTTCGGTTCATTTGTGG+TGG | 0.534990 | tig0022956:-33031 | Msa1403420:CDS |
| AAAATACTTACAGGATTGGA+AGG | 0.538098 | tig0022956:+35490 | None:intergenic |
| TACAGGATTGGAAGGAGAAG+AGG | 0.540707 | tig0022956:+35498 | None:intergenic |
| ATGATTTGAGAAGAAGGAGA+AGG | 0.541837 | tig0022956:+35616 | None:intergenic |
| ATGACAGCTGAGCCCTATGC+TGG | 0.544341 | tig0022956:-32748 | Msa1403420:CDS |
| ATGGCCGACCCGGTGAGCGA+TGG | 0.552023 | tig0022956:-33008 | Msa1403420:CDS |
| TTTGTGGTGGATGGCCGACC+CGG | 0.552350 | tig0022956:-33018 | Msa1403420:CDS |
| GCGTTTCTCTTTGGGAAAGG+AGG | 0.557838 | tig0022956:+32120 | None:intergenic |
| CTTAATTGTCAATATCTCCA+AGG | 0.564925 | tig0022956:-32857 | Msa1403420:CDS |
| TCAAAGTCAGGACCAGCATA+GGG | 0.570818 | tig0022956:+32736 | None:intergenic |
| TTAATTGTCAATATCTCCAA+GGG | 0.571494 | tig0022956:-32856 | Msa1403420:CDS |
| TACGATTTCTTGGAAGTAAG+GGG | 0.573631 | tig0022956:-32431 | Msa1403420:CDS |
| GGAACAAACGTGCCATTGGA+GGG | 0.575445 | tig0022956:+35701 | None:intergenic |
| ACAAAAGAGATATGATCTCA+TGG | 0.581216 | tig0022956:+32264 | None:intergenic |
| GTTTAGAATCAGAGACAACA+AGG | 0.600086 | tig0022956:+35723 | None:intergenic |
| AATTTCTACTTCTAAAGCAG+TGG | 0.605411 | tig0022956:+32196 | None:intergenic |
| TAATCCATCGCTCACCGGGT+CGG | 0.605600 | tig0022956:+33004 | None:intergenic |
| AGAAAACAGAGATCATAGGA+TGG | 0.614854 | tig0022956:-32358 | Msa1403420:CDS |
| AGGAACAGCTCCATCAAACA+TGG | 0.627059 | tig0022956:+32936 | None:intergenic |
| GATCATAGGATGGATGGAGA+AGG | 0.628625 | tig0022956:-32348 | Msa1403420:CDS |
| TCTGATTCTAAACCCTCCAA+TGG | 0.634226 | tig0022956:-35713 | Msa1403420:exon |
| TAGATAACTGAGTCACAGCA+TGG | 0.638949 | tig0022956:+31855 | None:intergenic |
| AATGAACCGAACTTGTCAGT+AGG | 0.644093 | tig0022956:+33039 | None:intergenic |
| ATGCGCAAAGAAGCTTTCGA+AGG | 0.659024 | tig0022956:-35568 | Msa1403420:CDS |
| TTTAGAATCAGAGACAACAA+GGG | 0.691321 | tig0022956:+35724 | None:intergenic |
| AACAGCTCCATCAAACATGG+TGG | 0.722000 | tig0022956:+32939 | None:intergenic |
| GCATCAGTACATGAAACACA+AGG | 0.733324 | tig0022956:-32381 | Msa1403420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTGATTTTTTAAAATTA+AGG | - | tig0022956:32743-32762 | Msa1403420:CDS | 10.0% |
| !!! | AGAACTTTTTACTTTTTTTA+AGG | - | tig0022956:32236-32255 | Msa1403420:three_prime_UTR | 15.0% |
| !! | AAGATGAAATAAAGTTAAAT+TGG | - | tig0022956:32454-32473 | Msa1403420:CDS | 15.0% |
| !!! | ATATAAAGAATCTTTTTGAT+TGG | + | tig0022956:32966-32985 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGTTATAGACA+TGG | - | tig0022956:32979-32998 | Msa1403420:CDS | 15.0% |
| !!! | CAACTTAATTTTTTAAAATC+AGG | + | tig0022956:33295-33314 | None:intergenic | 15.0% |
| !!! | AACTTTATTTTTCAAAATCA+GGG | + | tig0022956:33604-33623 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAAATAAAGTTGT+GGG | - | tig0022956:33606-33625 | Msa1403420:intron | 15.0% |
| !! | TAGGATTTATAATAACCAAA+TGG | + | tig0022956:31863-31882 | None:intergenic | 20.0% |
| !! | AAAAAAAATACTTACAGGAT+TGG | + | tig0022956:32127-32146 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAAAATACTTAC+AGG | + | tig0022956:32132-32151 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTTAAGGTAGTT+TGG | - | tig0022956:32244-32263 | Msa1403420:three_prime_UTR | 20.0% |
| !! | TTTGGTATAACTTAAGAAAA+CGG | + | tig0022956:32580-32599 | None:intergenic | 20.0% |
| !!! | CTGATTTTTTAAAATTAAGG+TGG | - | tig0022956:32746-32765 | Msa1403420:CDS | 20.0% |
| !!! | AGTTAAACTGTTTTTTGTAT+AGG | - | tig0022956:32799-32818 | Msa1403420:CDS | 20.0% |
| !!! | AATTTTTTAAAATCAGGCAT+GGG | + | tig0022956:33289-33308 | None:intergenic | 20.0% |
| !!! | TAATTTTTTAAAATCAGGCA+TGG | + | tig0022956:33290-33309 | None:intergenic | 20.0% |
| !!! | CAACTTTATTTTTCAAAATC+AGG | + | tig0022956:33605-33624 | None:intergenic | 20.0% |
| !!! | GATTTTGAAAAATAAAGTTG+TGG | - | tig0022956:33605-33624 | Msa1403420:intron | 20.0% |
| !!! | TTTAGCTTTTTCCTAAATAT+CGG | - | tig0022956:33650-33669 | Msa1403420:intron | 20.0% |
| !!! | TAGAATATTTAGAGTTTGTT+TGG | - | tig0022956:33685-33704 | Msa1403420:intron | 20.0% |
| !!! | TTTTTTTATCAAGGTAGAAA+GGG | - | tig0022956:33814-33833 | Msa1403420:intron | 20.0% |
| !!! | TAATTTTACAAAATCAGGTA+TGG | + | tig0022956:33851-33870 | None:intergenic | 20.0% |
| !!! | CAACTTAATTTTACAAAATC+AGG | + | tig0022956:33856-33875 | None:intergenic | 20.0% |
| !!! | CCAAAATAGTATATTTTCAT+CGG | + | tig0022956:34071-34090 | None:intergenic | 20.0% |
| !! | GTACAATCAATTTCAAAATA+CGG | + | tig0022956:34115-34134 | None:intergenic | 20.0% |
| !!! | ATGGTGTTTTTATTTCTAAA+AGG | - | tig0022956:34379-34398 | Msa1403420:intron | 20.0% |
| !!! | ACTATTGCATAATAGAATTT+TGG | - | tig0022956:35071-35090 | Msa1403420:intron | 20.0% |
| !! | TTAGAAGTAGAAATTGTATA+AGG | - | tig0022956:35422-35441 | Msa1403420:intron | 20.0% |
| !! | CAAAAACCATAAATACAATA+TGG | + | tig0022956:35462-35481 | None:intergenic | 20.0% |
| !!! | GATTTTAATTTCCCTGTTTT+TGG | - | tig0022956:32352-32371 | Msa1403420:CDS | 25.0% |
| ! | AAGTTGTTTATCCAAAAACA+GGG | + | tig0022956:32366-32385 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCCAAAAAC+AGG | + | tig0022956:32367-32386 | None:intergenic | 25.0% |
| !! | TGGATAAACAACTTAATTTG+TGG | - | tig0022956:32372-32391 | Msa1403420:CDS | 25.0% |
| ! | ATAAGCAATTGGAAATTGTT+TGG | + | tig0022956:32598-32617 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTAC+TGG | + | tig0022956:32622-32641 | None:intergenic | 25.0% |
| ! | TGTCTATAACAAAAGATGAA+GGG | + | tig0022956:32658-32677 | None:intergenic | 25.0% |
| ! | ATGTCTATAACAAAAGATGA+AGG | + | tig0022956:32659-32678 | None:intergenic | 25.0% |
| ! | AAACATCTTGTGTAAAAAAC+AGG | - | tig0022956:33142-33161 | Msa1403420:intron | 25.0% |
| ! | AACATCTTGTGTAAAAAACA+GGG | - | tig0022956:33143-33162 | Msa1403420:intron | 25.0% |
| ! | TAAGACTCTGTTTGAATAAA+GGG | + | tig0022956:33208-33227 | None:intergenic | 25.0% |
| !!! | AACTTAACTTGCTATAGATA+TGG | - | tig0022956:33495-33514 | Msa1403420:intron | 25.0% |
| ! | ATTCAGATTAAGACAATAGT+TGG | + | tig0022956:33562-33581 | None:intergenic | 25.0% |
| !! | GTCTTAATCTGAATGTTTTT+AGG | - | tig0022956:33568-33587 | Msa1403420:intron | 25.0% |
| !!! | TTAGCTTTTTCCTAAATATC+GGG | - | tig0022956:33651-33670 | Msa1403420:intron | 25.0% |
| ! | AGTTGAAATTGAATGGATAA+TGG | - | tig0022956:33790-33809 | Msa1403420:intron | 25.0% |
| !!! | GATAATGGCTTTTTTTATCA+AGG | - | tig0022956:33805-33824 | Msa1403420:intron | 25.0% |
| !!! | CTTTTTTTATCAAGGTAGAA+AGG | - | tig0022956:33813-33832 | Msa1403420:intron | 25.0% |
| !! | CCGATGAAAATATACTATTT+TGG | - | tig0022956:34068-34087 | Msa1403420:intron | 25.0% |
| ! | TCAAAATACGGTTATAAAAG+TGG | + | tig0022956:34103-34122 | None:intergenic | 25.0% |
| ! | TAGTTAGAACTAGAGTTAAA+GGG | + | tig0022956:34154-34173 | None:intergenic | 25.0% |
| ! | TTAGTTAGAACTAGAGTTAA+AGG | + | tig0022956:34155-34174 | None:intergenic | 25.0% |
| !!! | TTGAAGACTTGATATTTTGA+TGG | - | tig0022956:34346-34365 | Msa1403420:intron | 25.0% |
| ! | TCTTGTAGACATGAATAATT+AGG | - | tig0022956:34529-34548 | Msa1403420:intron | 25.0% |
| ! | CTTGTAGACATGAATAATTA+GGG | - | tig0022956:34530-34549 | Msa1403420:intron | 25.0% |
| ! | ATTTGCCAATGAAAACATTA+AGG | - | tig0022956:34642-34661 | Msa1403420:intron | 25.0% |
| !! | TTCAACCTTAATGTTTTCAT+TGG | + | tig0022956:34650-34669 | None:intergenic | 25.0% |
| ! | TTAATTGTCAATATCTCCAA+GGG | - | tig0022956:34754-34773 | Msa1403420:intron | 25.0% |
| ! | TGATACCATTTGTTCAAATT+CGG | + | tig0022956:34994-35013 | None:intergenic | 25.0% |
| ! | TGTAAAGAATCAACATTAAG+AGG | + | tig0022956:35127-35146 | None:intergenic | 25.0% |
| !!! | TCTTAATGTTGATTCTTTAC+AGG | - | tig0022956:35126-35145 | Msa1403420:intron | 25.0% |
| !!! | CTTAATGTTGATTCTTTACA+GGG | - | tig0022956:35127-35146 | Msa1403420:intron | 25.0% |
| ! | AGAAATTGTATAAGGTAAGT+AGG | - | tig0022956:35430-35449 | Msa1403420:intron | 25.0% |
| ! | AAGTGACCATATTGTATTTA+TGG | - | tig0022956:35453-35472 | Msa1403420:intron | 25.0% |
| !! | ATGTCAGAAACTATCTTTTA+TGG | - | tig0022956:35521-35540 | Msa1403420:CDS | 25.0% |
| !! | TTTTATGGAAGGTTTATTCT+CGG | - | tig0022956:35536-35555 | Msa1403420:CDS | 25.0% |
| ! | ACTTAGAAGATTCTACTTAT+TGG | - | tig0022956:35671-35690 | Msa1403420:CDS | 25.0% |
| ! | TTTAGAATCAGAGACAACAA+GGG | + | tig0022956:31889-31908 | None:intergenic | 30.0% |
| ! | TTTGGTTGATTAGGGTTTTT+CGG | + | tig0022956:31942-31961 | None:intergenic | 30.0% |
| AATGGGAATTTGGTTGATTA+GGG | + | tig0022956:31950-31969 | None:intergenic | 30.0% | |
| AATTTCATTACGAAGAAGTC+TGG | + | tig0022956:32076-32095 | None:intergenic | 30.0% | |
| AAAATACTTACAGGATTGGA+AGG | + | tig0022956:32123-32142 | None:intergenic | 30.0% | |
| !! | TTCTCTTGTTGTTTGTGTAA+TGG | - | tig0022956:32147-32166 | Msa1403420:three_prime_UTR | 30.0% |
| !! | TCTCTTGTTGTTTGTGTAAT+GGG | - | tig0022956:32148-32167 | Msa1403420:three_prime_UTR | 30.0% |
| !!! | TGTGTAATGGGTTTTTGTTA+TGG | - | tig0022956:32160-32179 | Msa1403420:three_prime_UTR | 30.0% |
| !!! | GTGTAATGGGTTTTTGTTAT+GGG | - | tig0022956:32161-32180 | Msa1403420:three_prime_UTR | 30.0% |
| !! | GGTTTTTGTTATGGGAAAAT+GGG | - | tig0022956:32169-32188 | Msa1403420:three_prime_UTR | 30.0% |
| CTTTGTTCTTGTTAGAATCA+TGG | - | tig0022956:32205-32224 | Msa1403420:three_prime_UTR | 30.0% | |
| ! | CTGTTTTCATAAGCTCAAAA+CGG | - | tig0022956:32496-32515 | Msa1403420:intron | 30.0% |
| TATCTACTGGTATAAGCAAT+TGG | + | tig0022956:32609-32628 | None:intergenic | 30.0% | |
| ATTCAGATGAAGACAATGTT+AGG | + | tig0022956:32705-32724 | None:intergenic | 30.0% | |
| ATTCAAACAGAGTCTTAAAG+TGG | - | tig0022956:33056-33075 | Msa1403420:intron | 30.0% | |
| TTCAAACAGAGTCTTAAAGT+GGG | - | tig0022956:33057-33076 | Msa1403420:intron | 30.0% | |
| ! | TTTTTACACAAGATGTTTCC+AGG | + | tig0022956:33140-33159 | None:intergenic | 30.0% |
| ACATCTTGTGTAAAAAACAG+GGG | - | tig0022956:33144-33163 | Msa1403420:intron | 30.0% | |
| CTAAGACTCTGTTTGAATAA+AGG | + | tig0022956:33209-33228 | None:intergenic | 30.0% | |
| CTTCTTCCTAAAATGTGTTT+AGG | - | tig0022956:33258-33277 | Msa1403420:intron | 30.0% | |
| AGTTATGAAACCCGATATTT+AGG | + | tig0022956:33664-33683 | None:intergenic | 30.0% | |
| TTTGTTTGGATAAACTGTTG+TGG | - | tig0022956:33699-33718 | Msa1403420:intron | 30.0% | |
| TCTCAGAAGTTGAAATTGAA+TGG | - | tig0022956:33783-33802 | Msa1403420:intron | 30.0% | |
| TAGTTTCTTCCCAATAATCA+GGG | - | tig0022956:33903-33922 | Msa1403420:intron | 30.0% | |
| CTTAATTGTGTAAACTGTTG+TGG | - | tig0022956:34021-34040 | Msa1403420:intron | 30.0% | |
| !!! | CCAAGTTTGTTTTAGATTCT+AGG | + | tig0022956:34297-34316 | None:intergenic | 30.0% |
| ! | CCTAGAATCTAAAACAAACT+TGG | - | tig0022956:34294-34313 | Msa1403420:intron | 30.0% |
| !! | TTTTGATGGCAATAAGTCAA+TGG | - | tig0022956:34360-34379 | Msa1403420:intron | 30.0% |
| !!! | ATTCTCTAGCTTTTTTCAGT+TGG | - | tig0022956:34490-34509 | Msa1403420:intron | 30.0% |
| !!! | AGCTTTTTTCAGTTGGATTT+TGG | - | tig0022956:34497-34516 | Msa1403420:intron | 30.0% |
| CTTGGAGATATTGACAATTA+AGG | + | tig0022956:34755-34774 | None:intergenic | 30.0% | |
| CTTAATTGTCAATATCTCCA+AGG | - | tig0022956:34753-34772 | Msa1403420:intron | 30.0% | |
| ! | CTTTTTATCACTATACTGTC+CGG | + | tig0022956:34817-34836 | None:intergenic | 30.0% |
| AAGTAAACTTACTCAAAGTC+AGG | + | tig0022956:34889-34908 | None:intergenic | 30.0% | |
| TGATTGTAAGCAAACAAGTA+GGG | + | tig0022956:34924-34943 | None:intergenic | 30.0% | |
| AATAGCCGAATTTGAACAAA+TGG | - | tig0022956:34986-35005 | Msa1403420:intron | 30.0% | |
| ATGCGCTATTTAGTACAAAA+TGG | - | tig0022956:35028-35047 | Msa1403420:intron | 30.0% | |
| ! | TACAAAATGGTGTCAAATAG+AGG | - | tig0022956:35041-35060 | Msa1403420:intron | 30.0% |
| TTTACGATTTCTTGGAAGTA+AGG | - | tig0022956:35177-35196 | Msa1403420:intron | 30.0% | |
| TTACGATTTCTTGGAAGTAA+GGG | - | tig0022956:35178-35197 | Msa1403420:intron | 30.0% | |
| ACAAAAGAGATATGATCTCA+TGG | + | tig0022956:35349-35368 | None:intergenic | 30.0% | |
| ACTGAAGTCTATTTCAAAGA+AGG | - | tig0022956:35370-35389 | Msa1403420:intron | 30.0% | |
| !! | AATTTCTACTTCTAAAGCAG+TGG | + | tig0022956:35417-35436 | None:intergenic | 30.0% |
| ! | CAGAAACTATCTTTTATGGA+AGG | - | tig0022956:35525-35544 | Msa1403420:CDS | 30.0% |
| CTGTTCTGTCAATTAAATCA+AGG | + | tig0022956:35731-35750 | None:intergenic | 30.0% | |
| ! | GTTTAGAATCAGAGACAACA+AGG | + | tig0022956:31890-31909 | None:intergenic | 35.0% |
| GAATGGGAATTTGGTTGATT+AGG | + | tig0022956:31951-31970 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTGAATGGGAATT+TGG | + | tig0022956:31960-31979 | None:intergenic | 35.0% |
| ! | CATAGTCGTTGTTGTTGAAT+GGG | + | tig0022956:31967-31986 | None:intergenic | 35.0% |
| ATGATTTGAGAAGAAGGAGA+AGG | + | tig0022956:31997-32016 | None:intergenic | 35.0% | |
| !! | GGGTTTTTGTTATGGGAAAA+TGG | - | tig0022956:32168-32187 | Msa1403420:three_prime_UTR | 35.0% |
| TTGCATAAGCTAAACTCTCT+TGG | - | tig0022956:32292-32311 | Msa1403420:three_prime_UTR | 35.0% | |
| ATAAGCTAAACTCTCTTGGA+TGG | - | tig0022956:32296-32315 | Msa1403420:three_prime_UTR | 35.0% | |
| TCATAAGCTCAAAACGGTTT+AGG | - | tig0022956:32502-32521 | Msa1403420:intron | 35.0% | |
| ! | ATAAGCACTTGGAGACTTTT+TGG | + | tig0022956:32920-32939 | None:intergenic | 35.0% |
| TATCTACCAACATAAGCACT+TGG | + | tig0022956:32931-32950 | None:intergenic | 35.0% | |
| ! | GAAGCTCCTAAACACATTTT+AGG | + | tig0022956:33267-33286 | None:intergenic | 35.0% |
| ! | TTTAGCTTCTTCCTACAATC+AGG | - | tig0022956:33339-33358 | Msa1403420:intron | 35.0% |
| TAGCTATGAAACCTGATTGT+AGG | + | tig0022956:33353-33372 | None:intergenic | 35.0% | |
| CAGGTTTCATAGCTACAAAA+TGG | - | tig0022956:33358-33377 | Msa1403420:intron | 35.0% | |
| ! | TACAAAATGGTTAGCTAGTG+CGG | - | tig0022956:33371-33390 | Msa1403420:intron | 35.0% |
| TTATCAAGGTAGAAAGGGTA+AGG | - | tig0022956:33819-33838 | Msa1403420:intron | 35.0% | |
| GTAGTTTCTTCCCAATAATC+AGG | - | tig0022956:33902-33921 | Msa1403420:intron | 35.0% | |
| AGTTTCTTCCCAATAATCAG+GGG | - | tig0022956:33904-33923 | Msa1403420:intron | 35.0% | |
| ! | CTAGTTTGTGTAAACTGTTG+TGG | - | tig0022956:33950-33969 | Msa1403420:intron | 35.0% |
| GTAAAGACAAACAGTGCATT+TGG | + | tig0022956:34326-34345 | None:intergenic | 35.0% | |
| TCTTTGCAACTAGTATCGTT+TGG | - | tig0022956:34463-34482 | Msa1403420:intron | 35.0% | |
| CTTTGCAACTAGTATCGTTT+GGG | - | tig0022956:34464-34483 | Msa1403420:intron | 35.0% | |
| TTTGCAACTAGTATCGTTTG+GGG | - | tig0022956:34465-34484 | Msa1403420:intron | 35.0% | |
| CGGACAGTATAGTGATAAAA+AGG | - | tig0022956:34815-34834 | Msa1403420:intron | 35.0% | |
| CTGATTGTAAGCAAACAAGT+AGG | + | tig0022956:34925-34944 | None:intergenic | 35.0% | |
| TTGTACTAAATAGCGCATCA+CGG | + | tig0022956:35026-35045 | None:intergenic | 35.0% | |
| GGATAGTCTTTACGATTTCT+TGG | - | tig0022956:35169-35188 | Msa1403420:intron | 35.0% | |
| TACGATTTCTTGGAAGTAAG+GGG | - | tig0022956:35179-35198 | Msa1403420:intron | 35.0% | |
| AAGGAGAAAACAGAGATCAT+AGG | - | tig0022956:35248-35267 | Msa1403420:intron | 35.0% | |
| AGAAAACAGAGATCATAGGA+TGG | - | tig0022956:35252-35271 | Msa1403420:intron | 35.0% | |
| ! | TCAGAGACAACAAGGGTTTT+AGG | + | tig0022956:31882-31901 | None:intergenic | 40.0% |
| TCTGATTCTAAACCCTCCAA+TGG | - | tig0022956:31897-31916 | Msa1403420:three_prime_UTR | 40.0% | |
| !! | TTAGGGTTTTTCGGAGAGAA+CGG | + | tig0022956:31933-31952 | None:intergenic | 40.0% |
| ! | GCATAGTCGTTGTTGTTGAA+TGG | + | tig0022956:31968-31987 | None:intergenic | 40.0% |
| CTGGAGATGATTTGAGAAGA+AGG | + | tig0022956:32003-32022 | None:intergenic | 40.0% | |
| TTGGGAGATGTAAGTTCTTC+TGG | + | tig0022956:32022-32041 | None:intergenic | 40.0% | |
| GAAAGCTTCTTTGCGCATTT+GGG | + | tig0022956:32040-32059 | None:intergenic | 40.0% | |
| AAGTCTCCAAGTGCTTATGT+TGG | - | tig0022956:32922-32941 | Msa1403420:CDS | 40.0% | |
| CTTGTGTAAAAAACAGGGGA+AGG | - | tig0022956:33148-33167 | Msa1403420:intron | 40.0% | |
| CAATACACCAATTAGTGCAC+CGG | - | tig0022956:33178-33197 | Msa1403420:intron | 40.0% | |
| AATACACCAATTAGTGCACC+GGG | - | tig0022956:33179-33198 | Msa1403420:intron | 40.0% | |
| AATGAACCGAACTTGTCAGT+AGG | + | tig0022956:34574-34593 | None:intergenic | 40.0% | |
| TGACAAGTTCGGTTCATTTG+TGG | - | tig0022956:34576-34595 | Msa1403420:intron | 40.0% | |
| ! | GTTGATTCTTTACAGGGAAC+TGG | - | tig0022956:35133-35152 | Msa1403420:intron | 40.0% |
| GCATCAGTACATGAAACACA+AGG | - | tig0022956:35229-35248 | Msa1403420:intron | 40.0% | |
| AACAGAGATCATAGGATGGA+TGG | - | tig0022956:35256-35275 | Msa1403420:intron | 40.0% | |
| ! | GTTTTCACGCGTTTCTCTTT+GGG | + | tig0022956:35501-35520 | None:intergenic | 40.0% |
| ! | TGTTTTCACGCGTTTCTCTT+TGG | + | tig0022956:35502-35521 | None:intergenic | 40.0% |
| TAGATAACTGAGTCACAGCA+TGG | + | tig0022956:35758-35777 | None:intergenic | 40.0% | |
| CGAAAGCTTCTTTGCGCATT+TGG | + | tig0022956:32041-32060 | None:intergenic | 45.0% | |
| ATGCGCAAAGAAGCTTTCGA+AGG | - | tig0022956:32042-32061 | Msa1403420:three_prime_UTR | 45.0% | |
| TACAGGATTGGAAGGAGAAG+AGG | + | tig0022956:32115-32134 | None:intergenic | 45.0% | |
| GAGTCTTAAAGTGGGAACCT+TGG | - | tig0022956:33065-33084 | Msa1403420:intron | 45.0% | |
| ! | CTTGTTGTCACGTGACTGAA+AGG | - | tig0022956:33100-33119 | Msa1403420:intron | 45.0% |
| TGTTTGAATAAAGGGCAGCC+CGG | + | tig0022956:33200-33219 | None:intergenic | 45.0% | |
| TTCCCAATAATCAGGGGTCA+TGG | - | tig0022956:33910-33929 | Msa1403420:intron | 45.0% | |
| AGCCATGACCCCTGATTATT+GGG | + | tig0022956:33915-33934 | None:intergenic | 45.0% | |
| TTGCAGCCTACTGACAAGTT+CGG | - | tig0022956:34565-34584 | Msa1403420:intron | 45.0% | |
| CAAGTTCGGTTCATTTGTGG+TGG | - | tig0022956:34579-34598 | Msa1403420:intron | 45.0% | |
| ! | TTCGGTTCATTTGTGGTGGA+TGG | - | tig0022956:34583-34602 | Msa1403420:intron | 45.0% |
| AATGTAATCCATCGCTCACC+GGG | + | tig0022956:34613-34632 | None:intergenic | 45.0% | |
| CAATGTAATCCATCGCTCAC+CGG | + | tig0022956:34614-34633 | None:intergenic | 45.0% | |
| GTTGAAGCCACCATGTTTGA+TGG | - | tig0022956:34664-34683 | Msa1403420:intron | 45.0% | |
| AACAGCTCCATCAAACATGG+TGG | + | tig0022956:34674-34693 | None:intergenic | 45.0% | |
| AGGAACAGCTCCATCAAACA+TGG | + | tig0022956:34677-34696 | None:intergenic | 45.0% | |
| GTTCCTGCTCCGAAAAAAAG+CGG | - | tig0022956:34691-34710 | Msa1403420:intron | 45.0% | |
| GTCAATATCTCCAAGGGAGA+TGG | - | tig0022956:34760-34779 | Msa1403420:intron | 45.0% | |
| TGGAAATCATGTGCTCTGCT+TGG | - | tig0022956:34791-34810 | Msa1403420:intron | 45.0% | |
| TCAAAGTCAGGACCAGCATA+GGG | + | tig0022956:34877-34896 | None:intergenic | 45.0% | |
| GATCATAGGATGGATGGAGA+AGG | - | tig0022956:35262-35281 | Msa1403420:intron | 45.0% | |
| ! | GGAACAAACGTGCCATTGGA+GGG | + | tig0022956:31912-31931 | None:intergenic | 50.0% |
| GAACGGAACAAACGTGCCAT+TGG | + | tig0022956:31916-31935 | None:intergenic | 50.0% | |
| ACAAGTTTACCGTTGCGCCA+AGG | + | tig0022956:33085-33104 | None:intergenic | 50.0% | |
| CAGCCATGACCCCTGATTAT+TGG | + | tig0022956:33916-33935 | None:intergenic | 50.0% | |
| TCCGAAAAAAAGCGGTGGTG+TGG | - | tig0022956:34699-34718 | Msa1403420:intron | 50.0% | |
| !!! | GCCACACCACCGCTTTTTTT+CGG | + | tig0022956:34703-34722 | None:intergenic | 50.0% |
| AATCATGTGCTCTGCTTGGC+CGG | - | tig0022956:34795-34814 | Msa1403420:intron | 50.0% | |
| CTCAAAGTCAGGACCAGCAT+AGG | + | tig0022956:34878-34897 | None:intergenic | 50.0% | |
| GGAACTGGATGATGAGTTGC+AGG | - | tig0022956:35148-35167 | Msa1403420:intron | 50.0% | |
| ! | GCGTTTCTCTTTGGGAAAGG+AGG | + | tig0022956:35493-35512 | None:intergenic | 50.0% |
| ! | CACGCGTTTCTCTTTGGGAA+AGG | + | tig0022956:35496-35515 | None:intergenic | 50.0% |
| ! | CGGAACAAACGTGCCATTGG+AGG | + | tig0022956:31913-31932 | None:intergenic | 55.0% |
| AAGTGGGAACCTTGGCGCAA+CGG | - | tig0022956:33073-33092 | Msa1403420:intron | 55.0% | |
| CACGTGACTGAAAGGTCACG+AGG | - | tig0022956:33108-33127 | Msa1403420:intron | 55.0% | |
| AAGGTCACGAGGTCAAGTCC+TGG | - | tig0022956:33119-33138 | Msa1403420:intron | 55.0% | |
| TAATCCATCGCTCACCGGGT+CGG | + | tig0022956:34609-34628 | None:intergenic | 55.0% | |
| !!! | CCACCGCTTTTTTTCGGAGC+AGG | + | tig0022956:34697-34716 | None:intergenic | 55.0% |
| CCTGCTCCGAAAAAAAGCGG+TGG | - | tig0022956:34694-34713 | Msa1403420:intron | 55.0% | |
| CAGCACATGACCATCTCCCT+TGG | + | tig0022956:34773-34792 | None:intergenic | 55.0% | |
| CAAGGGAGATGGTCATGTGC+TGG | - | tig0022956:34771-34790 | Msa1403420:intron | 55.0% | |
| ATGACAGCTGAGCCCTATGC+TGG | - | tig0022956:34862-34881 | Msa1403420:intron | 55.0% | |
| !! | TTTGTGGTGGATGGCCGACC+CGG | - | tig0022956:34592-34611 | Msa1403420:intron | 60.0% |
| GGGCAGCCCGGTGCACTAAT+TGG | + | tig0022956:33188-33207 | None:intergenic | 65.0% | |
| ATGGCCGACCCGGTGAGCGA+TGG | - | tig0022956:34602-34621 | Msa1403420:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022956 | gene | 31847 | 35785 | 31847 | ID=Msa1403420;Name=Msa1403420 |
| tig0022956 | mRNA | 31847 | 35785 | 31847 | ID=Msa1403420-mRNA-1;Parent=Msa1403420;Name=Msa1403420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|3|475|234 |
| tig0022956 | exon | 31847 | 32484 | 31847 | ID=Msa1403420-mRNA-1:exon:19275;Parent=Msa1403420-mRNA-1 |
| tig0022956 | exon | 32736 | 33061 | 32736 | ID=Msa1403420-mRNA-1:exon:19274;Parent=Msa1403420-mRNA-1 |
| tig0022956 | exon | 35501 | 35785 | 35501 | ID=Msa1403420-mRNA-1:exon:19273;Parent=Msa1403420-mRNA-1 |
| tig0022956 | five_prime_UTR | 35717 | 35785 | 35717 | ID=Msa1403420-mRNA-1:five_prime_utr;Parent=Msa1403420-mRNA-1 |
| tig0022956 | CDS | 35501 | 35716 | 35501 | ID=Msa1403420-mRNA-1:cds;Parent=Msa1403420-mRNA-1 |
| tig0022956 | CDS | 32736 | 33061 | 32736 | ID=Msa1403420-mRNA-1:cds;Parent=Msa1403420-mRNA-1 |
| tig0022956 | CDS | 32322 | 32484 | 32322 | ID=Msa1403420-mRNA-1:cds;Parent=Msa1403420-mRNA-1 |
| tig0022956 | three_prime_UTR | 31847 | 32321 | 31847 | ID=Msa1403420-mRNA-1:three_prime_utr;Parent=Msa1403420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
