Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379690 | XP_003602892.1 | 95.516 | 223 | 0 | 2 | 1 | 213 | 1 | 223 | 1.56e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379690 | G7J4K7 | 95.516 | 223 | 0 | 2 | 1 | 213 | 1 | 223 | 7.45e-148 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0379690 | 0.826303 | 2.921014e-54 | -8.615850e-47 |
| Msa0010500 | Msa0379690 | 0.821075 | 4.897109e-53 | -8.615850e-47 |
| Msa0020390 | Msa0379690 | 0.835880 | 1.296832e-56 | -8.615850e-47 |
| Msa0032470 | Msa0379690 | 0.800886 | 1.167865e-48 | -8.615850e-47 |
| Msa0036540 | Msa0379690 | 0.826219 | 3.058654e-54 | -8.615850e-47 |
| Msa0037540 | Msa0379690 | -0.810265 | 1.256144e-50 | -8.615850e-47 |
| Msa0037590 | Msa0379690 | -0.808421 | 3.122875e-50 | -8.615850e-47 |
| Msa0044000 | Msa0379690 | 0.811288 | 7.546448e-51 | -8.615850e-47 |
| Msa0059950 | Msa0379690 | 0.808304 | 3.307134e-50 | -8.615850e-47 |
| Msa0071250 | Msa0379690 | 0.818693 | 1.716107e-52 | -8.615850e-47 |
| Msa0082680 | Msa0379690 | -0.801364 | 9.324893e-49 | -8.615850e-47 |
| Msa0090550 | Msa0379690 | 0.818790 | 1.630739e-52 | -8.615850e-47 |
| Msa0090570 | Msa0379690 | 0.825616 | 4.254085e-54 | -8.615850e-47 |
| Msa0092410 | Msa0379690 | 0.811975 | 5.350687e-51 | -8.615850e-47 |
| Msa0093010 | Msa0379690 | 0.821235 | 4.496218e-53 | -8.615850e-47 |
| Msa0095360 | Msa0379690 | 0.821912 | 3.136380e-53 | -8.615850e-47 |
| Msa0095770 | Msa0379690 | 0.816652 | 4.951364e-52 | -8.615850e-47 |
| Msa0103790 | Msa0379690 | 0.805917 | 1.058801e-49 | -8.615850e-47 |
| Msa0118540 | Msa0379690 | 0.816927 | 4.295293e-52 | -8.615850e-47 |
| Msa0125650 | Msa0379690 | 0.823789 | 1.146631e-53 | -8.615850e-47 |
| Msa0127800 | Msa0379690 | 0.808698 | 2.725675e-50 | -8.615850e-47 |
| Msa0130720 | Msa0379690 | 0.807646 | 4.566463e-50 | -8.615850e-47 |
| Msa0137800 | Msa0379690 | 0.825684 | 4.098636e-54 | -8.615850e-47 |
| Msa0138020 | Msa0379690 | 0.800718 | 1.263907e-48 | -8.615850e-47 |
| Msa0139670 | Msa0379690 | 0.826804 | 2.219283e-54 | -8.615850e-47 |
| Msa0150230 | Msa0379690 | 0.839243 | 1.780870e-57 | -8.615850e-47 |
| Msa0154920 | Msa0379690 | 0.805204 | 1.494073e-49 | -8.615850e-47 |
| Msa0160960 | Msa0379690 | 0.816025 | 6.838405e-52 | -8.615850e-47 |
| Msa0167980 | Msa0379690 | 0.803032 | 4.230468e-49 | -8.615850e-47 |
| Msa0168800 | Msa0379690 | 0.813232 | 2.841227e-51 | -8.615850e-47 |
| Msa0183850 | Msa0379690 | 0.832576 | 8.738823e-56 | -8.615850e-47 |
| Msa0183870 | Msa0379690 | 0.819236 | 1.291201e-52 | -8.615850e-47 |
| Msa0188350 | Msa0379690 | 0.804474 | 2.123569e-49 | -8.615850e-47 |
| Msa0189520 | Msa0379690 | 0.811200 | 7.887063e-51 | -8.615850e-47 |
| Msa0196840 | Msa0379690 | 0.804830 | 1.789286e-49 | -8.615850e-47 |
| Msa0197650 | Msa0379690 | 0.813067 | 3.087509e-51 | -8.615850e-47 |
| Msa0199090 | Msa0379690 | 0.809460 | 1.872082e-50 | -8.615850e-47 |
| Msa0204960 | Msa0379690 | 0.832628 | 8.481808e-56 | -8.615850e-47 |
| Msa0207040 | Msa0379690 | -0.815723 | 7.988963e-52 | -8.615850e-47 |
| Msa0217290 | Msa0379690 | 0.822423 | 2.387542e-53 | -8.615850e-47 |
| Msa0217480 | Msa0379690 | 0.809740 | 1.629905e-50 | -8.615850e-47 |
| Msa0217700 | Msa0379690 | 0.819791 | 9.645084e-53 | -8.615850e-47 |
| Msa0231790 | Msa0379690 | 0.811221 | 7.802744e-51 | -8.615850e-47 |
| Msa0369920 | Msa0379690 | 0.803651 | 3.149006e-49 | -8.615850e-47 |
| Msa0379690 | Msa0380100 | 0.817988 | 2.478161e-52 | -8.615850e-47 |
| Msa0379690 | Msa0382370 | 0.822759 | 1.994281e-53 | -8.615850e-47 |
| Msa0379690 | Msa0385500 | 0.849653 | 2.817263e-60 | -8.615850e-47 |
| Msa0379690 | Msa0389210 | 0.870303 | 1.616223e-66 | -8.615850e-47 |
| Msa0379690 | Msa0394120 | 0.820580 | 6.362718e-53 | -8.615850e-47 |
| Msa0379690 | Msa0403770 | 0.849648 | 2.825256e-60 | -8.615850e-47 |
| Msa0379690 | Msa0417330 | 0.811329 | 7.394603e-51 | -8.615850e-47 |
| Msa0379690 | Msa0432160 | 0.838636 | 2.556241e-57 | -8.615850e-47 |
| Msa0379690 | Msa0434180 | 0.805652 | 1.203708e-49 | -8.615850e-47 |
| Msa0379690 | Msa0450400 | -0.822409 | 2.406291e-53 | -8.615850e-47 |
| Msa0379690 | Msa0460100 | 0.802811 | 4.699587e-49 | -8.615850e-47 |
| Msa0379690 | Msa0469620 | -0.844067 | 9.510136e-59 | -8.615850e-47 |
| Msa0379690 | Msa0476680 | 0.839379 | 1.641236e-57 | -8.615850e-47 |
| Msa0379690 | Msa0482940 | 0.826072 | 3.315720e-54 | -8.615850e-47 |
| Msa0379690 | Msa0485710 | 0.810886 | 9.223056e-51 | -8.615850e-47 |
| Msa0379690 | Msa0496450 | 0.802623 | 5.137214e-49 | -8.615850e-47 |
| Msa0379690 | Msa0521010 | 0.842382 | 2.675143e-58 | -8.615850e-47 |
| Msa0379690 | Msa0527540 | 0.804750 | 1.859679e-49 | -8.615850e-47 |
| Msa0379690 | Msa0534870 | 0.811172 | 7.995736e-51 | -8.615850e-47 |
| Msa0379690 | Msa0542560 | 0.822645 | 2.120589e-53 | -8.615850e-47 |
| Msa0379690 | Msa0544840 | 0.816335 | 5.831668e-52 | -8.615850e-47 |
| Msa0379690 | Msa0547160 | 0.809382 | 1.945181e-50 | -8.615850e-47 |
| Msa0379690 | Msa0549890 | 0.821257 | 4.446111e-53 | -8.615850e-47 |
| Msa0379690 | Msa0567350 | 0.812866 | 3.416658e-51 | -8.615850e-47 |
| Msa0379690 | Msa0588260 | 0.833969 | 3.930081e-56 | -8.615850e-47 |
| Msa0379690 | Msa0600080 | 0.803516 | 3.359125e-49 | -8.615850e-47 |
| Msa0379690 | Msa0600450 | 0.801125 | 1.043487e-48 | -8.615850e-47 |
| Msa0379690 | Msa0604290 | 0.817996 | 2.467627e-52 | -8.615850e-47 |
| Msa0379690 | Msa0610840 | -0.810218 | 1.285951e-50 | -8.615850e-47 |
| Msa0379690 | Msa0629240 | 0.820562 | 6.423948e-53 | -8.615850e-47 |
| Msa0379690 | Msa0642970 | 0.808108 | 3.641359e-50 | -8.615850e-47 |
| Msa0379690 | Msa0649220 | 0.806719 | 7.174677e-50 | -8.615850e-47 |
| Msa0379690 | Msa0679360 | 0.802219 | 6.224222e-49 | -8.615850e-47 |
| Msa0379690 | Msa0682680 | 0.818922 | 1.521739e-52 | -8.615850e-47 |
| Msa0379690 | Msa0688390 | 0.803738 | 3.020905e-49 | -8.615850e-47 |
| Msa0379690 | Msa0689320 | 0.811953 | 5.410178e-51 | -8.615850e-47 |
| Msa0379690 | Msa0709120 | 0.826124 | 3.222183e-54 | -8.615850e-47 |
| Msa0379690 | Msa0711150 | 0.841768 | 3.888597e-58 | -8.615850e-47 |
| Msa0379690 | Msa0719180 | 0.816258 | 6.067196e-52 | -8.615850e-47 |
| Msa0379690 | Msa0724170 | 0.837009 | 6.692717e-57 | -8.615850e-47 |
| Msa0379690 | Msa0741440 | 0.819878 | 9.213606e-53 | -8.615850e-47 |
| Msa0379690 | Msa0746170 | 0.831675 | 1.459204e-55 | -8.615850e-47 |
| Msa0379690 | Msa0746210 | 0.836138 | 1.115414e-56 | -8.615850e-47 |
| Msa0379690 | Msa0747630 | 0.970564 | 8.270170e-132 | -8.615850e-47 |
| Msa0379690 | Msa0750850 | 0.818111 | 2.324714e-52 | -8.615850e-47 |
| Msa0379690 | Msa0751850 | 0.804761 | 1.849571e-49 | -8.615850e-47 |
| Msa0379690 | Msa0755330 | 0.817827 | 2.694533e-52 | -8.615850e-47 |
| Msa0379690 | Msa0767370 | 0.809415 | 1.913763e-50 | -8.615850e-47 |
| Msa0379690 | Msa0784480 | 0.826861 | 2.150692e-54 | -8.615850e-47 |
| Msa0379690 | Msa0818060 | 0.820027 | 8.518111e-53 | -8.615850e-47 |
| Msa0379690 | Msa0822500 | 0.833585 | 4.900845e-56 | -8.615850e-47 |
| Msa0379690 | Msa0826150 | 0.801996 | 6.917228e-49 | -8.615850e-47 |
| Msa0379690 | Msa0830230 | 0.810235 | 1.275177e-50 | -8.615850e-47 |
| Msa0379690 | Msa0861470 | 0.812499 | 4.110878e-51 | -8.615850e-47 |
| Msa0379690 | Msa0861570 | 0.810744 | 9.897696e-51 | -8.615850e-47 |
| Msa0379690 | Msa0865030 | 0.827832 | 1.258294e-54 | -8.615850e-47 |
| Msa0379690 | Msa0877710 | 0.802179 | 6.342326e-49 | -8.615850e-47 |
| Msa0379690 | Msa0878220 | 0.821987 | 3.013399e-53 | -8.615850e-47 |
| Msa0379690 | Msa0880810 | 0.862147 | 6.226405e-64 | -8.615850e-47 |
| Msa0379690 | Msa0888260 | 0.808807 | 2.583102e-50 | -8.615850e-47 |
| Msa0379690 | Msa0894710 | 0.824755 | 6.794920e-54 | -8.615850e-47 |
| Msa0379690 | Msa0897200 | 0.801145 | 1.033646e-48 | -8.615850e-47 |
| Msa0379690 | Msa0902830 | 0.818291 | 2.115799e-52 | -8.615850e-47 |
| Msa0379690 | Msa0943970 | 0.832651 | 8.371685e-56 | -8.615850e-47 |
| Msa0379690 | Msa0944020 | 0.822967 | 1.784540e-53 | -8.615850e-47 |
| Msa0379690 | Msa0944200 | 0.815570 | 8.640781e-52 | -8.615850e-47 |
| Msa0379690 | Msa0944630 | -0.802236 | 6.174274e-49 | -8.615850e-47 |
| Msa0379690 | Msa0974950 | 0.855600 | 5.657155e-62 | -8.615850e-47 |
| Msa0379690 | Msa0994370 | 0.808662 | 2.773531e-50 | -8.615850e-47 |
| Msa0379690 | Msa1025080 | 0.845866 | 3.108186e-59 | -8.615850e-47 |
| Msa0379690 | Msa1029050 | 0.806484 | 8.043862e-50 | -8.615850e-47 |
| Msa0379690 | Msa1032770 | 0.807978 | 3.880242e-50 | -8.615850e-47 |
| Msa0379690 | Msa1048160 | 0.801571 | 8.456494e-49 | -8.615850e-47 |
| Msa0379690 | Msa1048220 | 0.804241 | 2.374278e-49 | -8.615850e-47 |
| Msa0379690 | Msa1059470 | 0.870394 | 1.508575e-66 | -8.615850e-47 |
| Msa0379690 | Msa1063420 | 0.802114 | 6.541337e-49 | -8.615850e-47 |
| Msa0379690 | Msa1063690 | 0.842375 | 2.687178e-58 | -8.615850e-47 |
| Msa0379690 | Msa1071320 | 0.811897 | 5.564415e-51 | -8.615850e-47 |
| Msa0379690 | Msa1081790 | -0.846536 | 2.042180e-59 | -8.615850e-47 |
| Msa0379690 | Msa1089450 | 0.830308 | 3.159718e-55 | -8.615850e-47 |
| Msa0379690 | Msa1089460 | 0.818848 | 1.582280e-52 | -8.615850e-47 |
| Msa0379690 | Msa1096070 | 0.861726 | 8.379595e-64 | -8.615850e-47 |
| Msa0379690 | Msa1100130 | -0.807918 | 3.997044e-50 | -8.615850e-47 |
| Msa0379690 | Msa1104560 | 0.840763 | 7.149321e-58 | -8.615850e-47 |
| Msa0379690 | Msa1109090 | 0.833931 | 4.016591e-56 | -8.615850e-47 |
| Msa0379690 | Msa1115240 | 0.803936 | 2.747473e-49 | -8.615850e-47 |
| Msa0379690 | Msa1122310 | -0.809921 | 1.489776e-50 | -8.615850e-47 |
| Msa0379690 | Msa1133230 | 0.828203 | 1.024464e-54 | -8.615850e-47 |
| Msa0379690 | Msa1133250 | 0.803669 | 3.122588e-49 | -8.615850e-47 |
| Msa0379690 | Msa1148090 | 0.811553 | 6.610342e-51 | -8.615850e-47 |
| Msa0379690 | Msa1152920 | 0.810288 | 1.241839e-50 | -8.615850e-47 |
| Msa0379690 | Msa1158640 | -0.815155 | 1.068659e-51 | -8.615850e-47 |
| Msa0379690 | Msa1166090 | -0.847476 | 1.129208e-59 | -8.615850e-47 |
| Msa0379690 | Msa1176710 | 0.817779 | 2.762783e-52 | -8.615850e-47 |
| Msa0379690 | Msa1176720 | 0.820965 | 5.188524e-53 | -8.615850e-47 |
| Msa0379690 | Msa1178580 | 0.819678 | 1.024070e-52 | -8.615850e-47 |
| Msa0379690 | Msa1184690 | 0.848140 | 7.407800e-60 | -8.615850e-47 |
| Msa0379690 | Msa1200250 | 0.827417 | 1.582796e-54 | -8.615850e-47 |
| Msa0379690 | Msa1206270 | 0.801832 | 7.474253e-49 | -8.615850e-47 |
| Msa0379690 | Msa1218580 | 0.863103 | 3.159759e-64 | -8.615850e-47 |
| Msa0379690 | Msa1221330 | 0.816822 | 4.536942e-52 | -8.615850e-47 |
| Msa0379690 | Msa1231840 | 0.826229 | 3.041815e-54 | -8.615850e-47 |
| Msa0379690 | Msa1233850 | 0.811346 | 7.332031e-51 | -8.615850e-47 |
| Msa0379690 | Msa1239780 | 0.803417 | 3.521665e-49 | -8.615850e-47 |
| Msa0379690 | Msa1262890 | 0.812868 | 3.414489e-51 | -8.615850e-47 |
| Msa0379690 | Msa1271130 | 0.838629 | 2.566794e-57 | -8.615850e-47 |
| Msa0379690 | Msa1276150 | 0.817494 | 3.203830e-52 | -8.615850e-47 |
| Msa0379690 | Msa1276340 | 0.818636 | 1.767214e-52 | -8.615850e-47 |
| Msa0379690 | Msa1279480 | 0.801295 | 9.632249e-49 | -8.615850e-47 |
| Msa0379690 | Msa1296830 | 0.810046 | 1.400469e-50 | -8.615850e-47 |
| Msa0379690 | Msa1306560 | 0.803357 | 3.623617e-49 | -8.615850e-47 |
| Msa0379690 | Msa1307180 | 0.819382 | 1.195938e-52 | -8.615850e-47 |
| Msa0379690 | Msa1316360 | 0.818341 | 2.061625e-52 | -8.615850e-47 |
| Msa0379690 | Msa1341060 | 0.825127 | 5.552120e-54 | -8.615850e-47 |
| Msa0379690 | Msa1345100 | 0.811975 | 5.350687e-51 | -8.615850e-47 |
| Msa0379690 | Msa1345940 | 0.842594 | 2.350783e-58 | -8.615850e-47 |
| Msa0379690 | Msa1346840 | 0.821751 | 3.417734e-53 | -8.615850e-47 |
| Msa0379690 | Msa1355890 | 0.861710 | 8.470276e-64 | -8.615850e-47 |
| Msa0379690 | Msa1359270 | 0.827332 | 1.659026e-54 | -8.615850e-47 |
| Msa0379690 | Msa1370590 | 0.825036 | 5.834845e-54 | -8.615850e-47 |
| Msa0379690 | Msa1380220 | 0.800790 | 1.221644e-48 | -8.615850e-47 |
| Msa0379690 | Msa1384100 | 0.825281 | 5.106610e-54 | -8.615850e-47 |
| Msa0379690 | Msa1394380 | 0.801089 | 1.061252e-48 | -8.615850e-47 |
| Msa0379690 | Msa1395730 | 0.822817 | 1.933945e-53 | -8.615850e-47 |
| Msa0379690 | Msa1396400 | -0.847851 | 8.902214e-60 | -8.615850e-47 |
| Msa0379690 | Msa1407190 | 0.820950 | 5.230901e-53 | -8.615850e-47 |
| Msa0379690 | Msa1410550 | 0.817559 | 3.097435e-52 | -8.615850e-47 |
| Msa0379690 | Msa1419690 | 0.829137 | 6.091716e-55 | -8.615850e-47 |
| Msa0379690 | Msa1432130 | 0.819543 | 1.098868e-52 | -8.615850e-47 |
| Msa0379690 | Msa1436600 | 0.860005 | 2.791892e-63 | -8.615850e-47 |
| Msa0379690 | Msa1437730 | 0.821561 | 3.781024e-53 | -8.615850e-47 |
| Msa0379690 | Msa1444120 | 0.827223 | 1.761594e-54 | -8.615850e-47 |
| Msa0379690 | Msa1447890 | 0.810193 | 1.302133e-50 | -8.615850e-47 |
| Msa0379690 | Msa1449340 | -0.801953 | 7.058821e-49 | -8.615850e-47 |
| Msa0379690 | Msa1454570 | 0.829628 | 4.628604e-55 | -8.615850e-47 |
| Msa0379690 | Msa1460320 | -0.829972 | 3.815632e-55 | -8.615850e-47 |
| Msa0240900 | Msa0379690 | 0.812172 | 4.845073e-51 | -8.615850e-47 |
| Msa0241140 | Msa0379690 | 0.821667 | 3.573608e-53 | -8.615850e-47 |
| Msa0243090 | Msa0379690 | 0.802065 | 6.694099e-49 | -8.615850e-47 |
| Msa0257490 | Msa0379690 | 0.840382 | 8.994829e-58 | -8.615850e-47 |
| Msa0257520 | Msa0379690 | 0.825129 | 5.546530e-54 | -8.615850e-47 |
| Msa0259230 | Msa0379690 | 0.800186 | 1.622203e-48 | -8.615850e-47 |
| Msa0265430 | Msa0379690 | 0.810724 | 9.996253e-51 | -8.615850e-47 |
| Msa0269470 | Msa0379690 | 0.827491 | 1.519689e-54 | -8.615850e-47 |
| Msa0269560 | Msa0379690 | 0.813989 | 1.936213e-51 | -8.615850e-47 |
| Msa0278570 | Msa0379690 | 0.837683 | 4.497468e-57 | -8.615850e-47 |
| Msa0278580 | Msa0379690 | 0.818933 | 1.513667e-52 | -8.615850e-47 |
| Msa0281530 | Msa0379690 | 0.844412 | 7.682708e-59 | -8.615850e-47 |
| Msa0296620 | Msa0379690 | 0.805131 | 1.548101e-49 | -8.615850e-47 |
| Msa0296790 | Msa0379690 | 0.833968 | 3.931508e-56 | -8.615850e-47 |
| Msa0296820 | Msa0379690 | 0.831935 | 1.258763e-55 | -8.615850e-47 |
| Msa0299660 | Msa0379690 | 0.800567 | 1.356471e-48 | -8.615850e-47 |
| Msa0317960 | Msa0379690 | 0.808477 | 3.038487e-50 | -8.615850e-47 |
| Msa0317970 | Msa0379690 | 0.845804 | 3.230780e-59 | -8.615850e-47 |
| Msa0320590 | Msa0379690 | 0.822955 | 1.795429e-53 | -8.615850e-47 |
| Msa0321690 | Msa0379690 | 0.811934 | 5.461690e-51 | -8.615850e-47 |
| Msa0340380 | Msa0379690 | 0.811462 | 6.918441e-51 | -8.615850e-47 |
| Msa0343850 | Msa0379690 | 0.817176 | 3.777322e-52 | -8.615850e-47 |
| Msa0347750 | Msa0379690 | 0.814002 | 1.923253e-51 | -8.615850e-47 |
| Msa0357900 | Msa0379690 | 0.812608 | 3.891481e-51 | -8.615850e-47 |
| Msa0358860 | Msa0379690 | 0.805699 | 1.176503e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379690 | MtrunA17_Chr3g0132801 | 95.516 | 223 | 0 | 2 | 1 | 213 | 1 | 223 | 1.44e-151 | 419 |
| Msa0379690 | MtrunA17_Chr8g0367261 | 38.725 | 204 | 102 | 7 | 18 | 206 | 13 | 208 | 3.15e-31 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379690 | AT5G65520.1 | 40.625 | 192 | 99 | 5 | 18 | 197 | 12 | 200 | 3.56e-36 | 126 |
Find 55 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTCATTTCGGTGTTTCT+TGG | 0.193148 | 3_1:+81047622 | Msa0379690:three_prime_UTR |
| AGATACGAAGCGGCGTCTTT+TGG | 0.244593 | 3_1:-81045048 | Msa0379680:three_prime_UTR |
| CCCTAGTGTTGGTTTCTACT+TGG | 0.278297 | 3_1:+81047751 | Msa0379690:three_prime_UTR |
| TAGTGATGTATAACAAATTA+TGG | 0.290086 | 3_1:-81047787 | Msa0379680:three_prime_UTR |
| CACCAAGCTTTCGCGTTCTT+CGG | 0.307624 | 3_1:-81045282 | Msa0379680:three_prime_UTR |
| GGAAGCAAAGAAAGCTTATA+AGG | 0.314616 | 3_1:+81045344 | Msa0379690:CDS |
| GTGTTATGAAGGGAAGAAAA+TGG | 0.346267 | 3_1:+81045317 | Msa0379690:CDS |
| CGGTGTTTCTTGGCTTTGGC+AGG | 0.347122 | 3_1:+81047632 | Msa0379690:three_prime_UTR |
| TTCGTTTGCGAGGTTGTTGA+TGG | 0.363091 | 3_1:-81044989 | Msa0379680:three_prime_UTR |
| ATTTCGGTGTTTCTTGGCTT+TGG | 0.368482 | 3_1:+81047628 | Msa0379690:three_prime_UTR |
| GCTATGGCACCATGTCATTT+CGG | 0.393391 | 3_1:+81047612 | Msa0379690:three_prime_UTR |
| TGCCTGTAGAAGCACTTAAC+AGG | 0.416791 | 3_1:+81045397 | Msa0379690:CDS |
| GAGGTTGTTGATGGCGGATC+TGG | 0.441588 | 3_1:-81044980 | Msa0379680:three_prime_UTR |
| GTCCGAAGAACGCGAAAGCT+TGG | 0.448178 | 3_1:+81045280 | Msa0379690:CDS |
| GCGAAAGCTTGGTGTGCGTT+GGG | 0.450050 | 3_1:+81045291 | Msa0379690:CDS |
| CGCGAAAGCTTGGTGTGCGT+TGG | 0.456259 | 3_1:+81045290 | Msa0379690:CDS |
| TTATAAGGAAGCTCATGAAT+TGG | 0.465517 | 3_1:+81045359 | Msa0379690:CDS |
| GAAAGGTGTTTCATTAGCTA+TGG | 0.469154 | 3_1:+81047596 | Msa0379690:three_prime_UTR |
| GCTATGATTCTCGATCTTCA+AGG | 0.478244 | 3_1:+81045078 | Msa0379690:CDS |
| AATGTGGCGGCGCTTTGTTA+AGG | 0.496636 | 3_1:+81047667 | Msa0379690:three_prime_UTR |
| ACGAGTTGACTCGGCGTTAG+CGG | 0.514403 | 3_1:+81045233 | Msa0379690:CDS |
| CGCCTAAGGCTTCGTTTGCG+AGG | 0.524088 | 3_1:-81044999 | Msa0379680:three_prime_UTR |
| CAGCAATGTAACAAAAGATA+CGG | 0.526619 | 3_1:+81047535 | Msa0379690:intron |
| AAATTTGTGTACCCTAGTGT+TGG | 0.542240 | 3_1:+81047740 | Msa0379690:three_prime_UTR |
| TATTGAGGAAGAATGTATGT+TGG | 0.544110 | 3_1:+81047574 | Msa0379690:three_prime_UTR |
| TTAATCTTCCTCAGCATGCA+CGG | 0.553368 | 3_1:+81044838 | Msa0379690:CDS |
| GCGTTGTCTCCTCTCGCCGC+CGG | 0.558332 | 3_1:+81045135 | Msa0379690:CDS |
| GCGTTGGGAGAGTGTTATGA+AGG | 0.558916 | 3_1:+81045306 | Msa0379690:CDS |
| TGAACGCGGACGAGTTGACT+CGG | 0.566518 | 3_1:+81045224 | Msa0379690:CDS |
| CAAGCGATGTACCGCGACAT+CGG | 0.569247 | 3_1:+81044784 | Msa0379690:CDS |
| TGAAGGGAAGAAAATGGATG+AGG | 0.575977 | 3_1:+81045323 | Msa0379690:CDS |
| AACCTGTTAAGTGCTTCTAC+AGG | 0.580757 | 3_1:-81045399 | Msa0379680:three_prime_UTR |
| AGGAAGAATGTATGTTGGAA+AGG | 0.594020 | 3_1:+81047579 | Msa0379690:three_prime_UTR |
| TTTGGAATCGGAGTTTAGCG+AGG | 0.596238 | 3_1:-81044876 | Msa0379680:three_prime_UTR |
| GTTTGCGAGGTTGTTGATGG+CGG | 0.604157 | 3_1:-81044986 | Msa0379680:three_prime_UTR |
| TCAAGCGAACCGGCGGCGAG+AGG | 0.609088 | 3_1:-81045144 | Msa0379680:three_prime_UTR |
| GCAGTCTTGAACTTCTATTG+AGG | 0.611422 | 3_1:+81047559 | Msa0379690:exon |
| CAAGAAACACCGAAATGACA+TGG | 0.618215 | 3_1:-81047621 | Msa0379680:three_prime_UTR |
| ACCAAGTAGAAACCAACACT+AGG | 0.619181 | 3_1:-81047752 | Msa0379680:three_prime_UTR |
| CCAAGTAGAAACCAACACTA+GGG | 0.636091 | 3_1:-81047751 | Msa0379680:three_prime_UTR |
| AGTCATCATGATCCTCGCAA+TGG | 0.640456 | 3_1:+81044813 | Msa0379690:CDS |
| TCGCTTGAGCAAGGTGAACG+TGG | 0.649304 | 3_1:+81045159 | Msa0379690:intron |
| GATGTAAGAAGCAAATGTGG+CGG | 0.650810 | 3_1:+81047654 | Msa0379690:three_prime_UTR |
| CGTTGGGAGAGTGTTATGAA+GGG | 0.659064 | 3_1:+81045307 | Msa0379690:CDS |
| GTGGAATTCCGTGCATGCTG+AGG | 0.659142 | 3_1:-81044846 | Msa0379680:three_prime_UTR |
| AACCTCGCAAACGAAGCCTT+AGG | 0.661102 | 3_1:+81044997 | Msa0379690:CDS |
| CAGGATGTAAGAAGCAAATG+TGG | 0.661856 | 3_1:+81047651 | Msa0379690:three_prime_UTR |
| GTTAGCGGATTTGACTGAGT+CGG | 0.668658 | 3_1:+81045248 | Msa0379690:CDS |
| AGCTTTGAGAAGATACGAAG+CGG | 0.671113 | 3_1:-81045058 | Msa0379680:three_prime_UTR |
| AAACTCGCAACGAGTGAACG+CGG | 0.681953 | 3_1:+81045210 | Msa0379690:CDS |
| GGAAGATTAAAGCCATTGCG+AGG | 0.704504 | 3_1:-81044825 | Msa0379680:three_prime_UTR |
| TGACTTGTAAACCGATGTCG+CGG | 0.717200 | 3_1:-81044795 | Msa0379680:three_prime_UTR |
| GGCGTCGAGTGATTCAAGAG+CGG | 0.721407 | 3_1:-81045112 | Msa0379680:three_prime_UTR |
| TCTACAGGCACAGAATACTG+TGG | 0.738815 | 3_1:-81045384 | Msa0379680:three_prime_UTR |
| GGCGGCGAGAGGAGACAACG+CGG | 0.761382 | 3_1:-81045133 | Msa0379680:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTATATAAATGTAATAAA+AGG | + | chr3_1:81046014-81046033 | Msa0379690:intron | 10.0% |
| !! | GTTATATAAATGTAATAAAA+GGG | + | chr3_1:81046015-81046034 | Msa0379690:intron | 10.0% |
| !!! | AATTTTTTTTTAGAGATTAA+AGG | + | chr3_1:81047180-81047199 | Msa0379690:intron | 10.0% |
| !!! | TTTTTTTTTTTCATGAACTT+TGG | + | chr3_1:81047203-81047222 | Msa0379690:intron | 15.0% |
| !!! | TTTTTTTTTTCATGAACTTT+GGG | + | chr3_1:81047204-81047223 | Msa0379690:intron | 15.0% |
| !! | ATGCTAAATTAAAAGACTTA+TGG | + | chr3_1:81045498-81045517 | Msa0379690:intron | 20.0% |
| !! | TGCTAAATTAAAAGACTTAT+GGG | + | chr3_1:81045499-81045518 | Msa0379690:intron | 20.0% |
| !!! | CGTGTTAATTTTATAAATGT+GGG | - | chr3_1:81046054-81046073 | Msa0379680:intron | 20.0% |
| !!! | ACGTGTTAATTTTATAAATG+TGG | - | chr3_1:81046055-81046074 | Msa0379680:intron | 20.0% |
| !! | GCTATTTACAGATTTATTAT+AGG | + | chr3_1:81046196-81046215 | Msa0379690:intron | 20.0% |
| !! | AAAATAGACAAATTCAAACT+TGG | - | chr3_1:81046430-81046449 | Msa0379680:intron | 20.0% |
| !!! | TTTTTGAAAGAGAATATTAC+TGG | - | chr3_1:81046552-81046571 | Msa0379680:intron | 20.0% |
| !!! | TTATAATTTGCCAAATTTCA+AGG | + | chr3_1:81046632-81046651 | Msa0379690:intron | 20.0% |
| !!! | TTTTTTTCATCAACAACAAT+AGG | + | chr3_1:81047461-81047480 | Msa0379690:intron | 20.0% |
| !! | TAGTGATGTATAACAAATTA+TGG | - | chr3_1:81047790-81047809 | Msa0379680:three_prime_UTR | 20.0% |
| ! | GAAATATTTATTCTTCCTTC+TGG | + | chr3_1:81045627-81045646 | Msa0379690:intron | 25.0% |
| !! | TGAAGTTAAGTTGTGTTAAA+AGG | + | chr3_1:81045759-81045778 | Msa0379690:intron | 25.0% |
| !!! | AGGACATTTTTTGCTAAAAT+TGG | + | chr3_1:81045782-81045801 | Msa0379690:intron | 25.0% |
| !! | ATTTTTAATCTCCTTTCGTT+TGG | + | chr3_1:81045986-81046005 | Msa0379690:intron | 25.0% |
| !! | ATAACATTTTACCAAACGAA+AGG | - | chr3_1:81046000-81046019 | Msa0379680:intron | 25.0% |
| !!! | TGAACTCTATTTTCTTGTTT+TGG | - | chr3_1:81046169-81046188 | Msa0379680:intron | 25.0% |
| ! | TGATCATCATCTAAAAATGT+TGG | + | chr3_1:81046367-81046386 | Msa0379690:intron | 25.0% |
| ! | GGATGTCAATATTGAAAATT+TGG | + | chr3_1:81046402-81046421 | Msa0379690:intron | 25.0% |
| !! | AAACAAAAGTGTGAAAATCT+AGG | - | chr3_1:81046475-81046494 | Msa0379680:intron | 25.0% |
| !!! | TTTAGCTTTTGATTCACAAA+TGG | + | chr3_1:81047028-81047047 | Msa0379690:intron | 25.0% |
| ! | ATACAATGCTTAAACTGTTT+AGG | - | chr3_1:81047129-81047148 | Msa0379680:intron | 25.0% |
| !!! | GTGAAGACTTGTTTTTATTA+TGG | - | chr3_1:81047244-81047263 | Msa0379680:intron | 25.0% |
| TTATAAGGAAGCTCATGAAT+TGG | + | chr3_1:81045359-81045378 | Msa0379690:CDS | 30.0% | |
| TAGGCGTTAATAAATGATTC+TGG | + | chr3_1:81045529-81045548 | Msa0379690:intron | 30.0% | |
| TATCATGAAGAGCAAAGTTT+CGG | + | chr3_1:81045585-81045604 | Msa0379690:intron | 30.0% | |
| ! | AGTTAAGTTGTGTTAAAAGG+AGG | + | chr3_1:81045762-81045781 | Msa0379690:intron | 30.0% |
| TTGAACGTAATCACATGTAT+CGG | + | chr3_1:81045876-81045895 | Msa0379690:intron | 30.0% | |
| AAAAGCGATTAAAGCAAACA+TGG | - | chr3_1:81045945-81045964 | Msa0379680:intron | 30.0% | |
| AGGACTACGAATTATTCAAA+AGG | + | chr3_1:81046254-81046273 | Msa0379690:intron | 30.0% | |
| AATATTGACATCCAAGTTAC+TGG | - | chr3_1:81046395-81046414 | Msa0379680:intron | 30.0% | |
| ! | AATTGGCCATTGATAATAGA+AGG | - | chr3_1:81046604-81046623 | Msa0379680:intron | 30.0% |
| AAGAGATACACCTTGAAATT+TGG | - | chr3_1:81046645-81046664 | Msa0379680:intron | 30.0% | |
| TCATGAAATTGCAAGTGAAA+GGG | - | chr3_1:81046709-81046728 | Msa0379680:intron | 30.0% | |
| !! | CTTCACTTGTTTTCTCTTTT+GGG | + | chr3_1:81046820-81046839 | Msa0379690:intron | 30.0% |
| AAGAGGCTAAAAGTAGAAAT+TGG | + | chr3_1:81046876-81046895 | Msa0379690:intron | 30.0% | |
| ATGCTTAAACTGTTTAGGTA+GGG | - | chr3_1:81047124-81047143 | Msa0379680:intron | 30.0% | |
| AATGCTTAAACTGTTTAGGT+AGG | - | chr3_1:81047125-81047144 | Msa0379680:intron | 30.0% | |
| AACTATTGACCAACAATTCA+TGG | + | chr3_1:81047379-81047398 | Msa0379690:intron | 30.0% | |
| AAGTTAGTATCAGAGACAAT+CGG | - | chr3_1:81047497-81047516 | Msa0379680:intron | 30.0% | |
| CAGCAATGTAACAAAAGATA+CGG | + | chr3_1:81047535-81047554 | Msa0379690:intron | 30.0% | |
| TATTGAGGAAGAATGTATGT+TGG | + | chr3_1:81047574-81047593 | Msa0379690:three_prime_UTR | 30.0% | |
| ! | AGTTTAGCGAGGAATTTTTG+TGG | - | chr3_1:81044868-81044887 | Msa0379680:three_prime_UTR | 35.0% |
| !!! | TTGCTTTTCGGTTTTGGAAT+CGG | - | chr3_1:81044891-81044910 | Msa0379680:three_prime_UTR | 35.0% |
| !! | CTTTGATTGCTTTTCGGTTT+TGG | - | chr3_1:81044897-81044916 | Msa0379680:three_prime_UTR | 35.0% |
| !! | GCTTTGCTTTGATTGCTTTT+CGG | - | chr3_1:81044903-81044922 | Msa0379680:three_prime_UTR | 35.0% |
| GTGTTATGAAGGGAAGAAAA+TGG | + | chr3_1:81045317-81045336 | Msa0379690:CDS | 35.0% | |
| GGAAGCAAAGAAAGCTTATA+AGG | + | chr3_1:81045344-81045363 | Msa0379690:CDS | 35.0% | |
| CGTTTCTTTCTTAATCCAGA+AGG | - | chr3_1:81045645-81045664 | Msa0379680:intron | 35.0% | |
| !!! | GTTGGTTTTGAAACAACGAA+CGG | - | chr3_1:81045708-81045727 | Msa0379680:intron | 35.0% |
| !!! | CCTCTCGTTTTATTTTCAGT+TGG | - | chr3_1:81045726-81045745 | Msa0379680:intron | 35.0% |
| CCAACTGAAAATAAAACGAG+AGG | + | chr3_1:81045723-81045742 | Msa0379690:intron | 35.0% | |
| AATAAAACGAGAGGAACATC+AGG | + | chr3_1:81045732-81045751 | Msa0379690:intron | 35.0% | |
| !! | GTTTGAAGTGATTTTGAGAG+TGG | + | chr3_1:81046111-81046130 | Msa0379690:intron | 35.0% |
| ! | ATATTTTATCGTGAGAGGAG+AGG | - | chr3_1:81046145-81046164 | Msa0379680:intron | 35.0% |
| ! | TTGGCATATTTTATCGTGAG+AGG | - | chr3_1:81046150-81046169 | Msa0379680:intron | 35.0% |
| TGTGGCATGGAAAATTGAAA+AGG | - | chr3_1:81046225-81046244 | Msa0379680:intron | 35.0% | |
| ATTCAAAAGGTGAGTTAGTG+TGG | + | chr3_1:81046267-81046286 | Msa0379690:intron | 35.0% | |
| AAAACCAAAACCAGATTGTG+GGG | - | chr3_1:81046303-81046322 | Msa0379680:intron | 35.0% | |
| CAAAACCAAAACCAGATTGT+GGG | - | chr3_1:81046304-81046323 | Msa0379680:intron | 35.0% | |
| AAATGTTGGAACCAGTAACT+TGG | + | chr3_1:81046381-81046400 | Msa0379690:intron | 35.0% | |
| GCTTCTCCTTCTATTATCAA+TGG | + | chr3_1:81046595-81046614 | Msa0379690:intron | 35.0% | |
| GTCATGAAATTGCAAGTGAA+AGG | - | chr3_1:81046710-81046729 | Msa0379680:intron | 35.0% | |
| CAAGTGAAGGAACAAAGTAA+AGG | - | chr3_1:81046809-81046828 | Msa0379680:intron | 35.0% | |
| CCAAAAGAGAAAACAAGTGA+AGG | - | chr3_1:81046822-81046841 | Msa0379680:intron | 35.0% | |
| !! | CCTTCACTTGTTTTCTCTTT+TGG | + | chr3_1:81046819-81046838 | Msa0379690:intron | 35.0% |
| AGAAATGTTAACCAATGTCC+GGG | - | chr3_1:81047000-81047019 | Msa0379680:intron | 35.0% | |
| GAGAAATGTTAACCAATGTC+CGG | - | chr3_1:81047001-81047020 | Msa0379680:intron | 35.0% | |
| TAAAAACAAGTCTTCACTCG+TGG | + | chr3_1:81047247-81047266 | Msa0379690:intron | 35.0% | |
| AAAAACAAGTCTTCACTCGT+GGG | + | chr3_1:81047248-81047267 | Msa0379690:intron | 35.0% | |
| TATACAAGCGAAAAGACATG+AGG | - | chr3_1:81047323-81047342 | Msa0379680:intron | 35.0% | |
| AGGAAGAATGTATGTTGGAA+AGG | + | chr3_1:81047579-81047598 | Msa0379690:three_prime_UTR | 35.0% | |
| !! | GAAAGGTGTTTCATTAGCTA+TGG | + | chr3_1:81047596-81047615 | Msa0379690:three_prime_UTR | 35.0% |
| AAATTTGTGTACCCTAGTGT+TGG | + | chr3_1:81047740-81047759 | Msa0379690:three_prime_UTR | 35.0% | |
| TTAATCTTCCTCAGCATGCA+CGG | + | chr3_1:81044838-81044857 | Msa0379690:CDS | 40.0% | |
| !!! | ATCGAGTTCGATCGCTTTTT+CGG | - | chr3_1:81045028-81045047 | Msa0379680:three_prime_UTR | 40.0% |
| !! | AGCTTTGAGAAGATACGAAG+CGG | - | chr3_1:81045061-81045080 | Msa0379680:three_prime_UTR | 40.0% |
| GCTATGATTCTCGATCTTCA+AGG | + | chr3_1:81045078-81045097 | Msa0379690:CDS | 40.0% | |
| TGAAGGGAAGAAAATGGATG+AGG | + | chr3_1:81045323-81045342 | Msa0379690:CDS | 40.0% | |
| AACCTGTTAAGTGCTTCTAC+AGG | - | chr3_1:81045402-81045421 | Msa0379680:intron | 40.0% | |
| !! | TGTAGAAGCACTTAACAGGT+TGG | + | chr3_1:81045401-81045420 | Msa0379690:intron | 40.0% |
| !! | GTAGAAGCACTTAACAGGTT+GGG | + | chr3_1:81045402-81045421 | Msa0379690:intron | 40.0% |
| AAGACTTATGGGTCAAGAGT+AGG | + | chr3_1:81045510-81045529 | Msa0379690:intron | 40.0% | |
| ! | TAATCACATGTATCGGTGTC+AGG | + | chr3_1:81045883-81045902 | Msa0379690:intron | 40.0% |
| TCCATGCCACAATCGTAATT+AGG | + | chr3_1:81046234-81046253 | Msa0379690:intron | 40.0% | |
| TCCTAATTACGATTGTGGCA+TGG | - | chr3_1:81046238-81046257 | Msa0379680:intron | 40.0% | |
| CGTAGTCCTAATTACGATTG+TGG | - | chr3_1:81046243-81046262 | Msa0379680:intron | 40.0% | |
| CCAAAACCAAAACCAGATTG+TGG | - | chr3_1:81046305-81046324 | Msa0379680:intron | 40.0% | |
| !!! | CCACAATCTGGTTTTGGTTT+TGG | + | chr3_1:81046302-81046321 | Msa0379690:intron | 40.0% |
| GTGAAAATCTAGGCATGTAG+TGG | - | chr3_1:81046465-81046484 | Msa0379680:intron | 40.0% | |
| AAAAACACGAGAAGCCACAT+GGG | + | chr3_1:81046567-81046586 | Msa0379690:intron | 40.0% | |
| TCAAGACAGCAAAAGTTGCA+CGG | - | chr3_1:81046668-81046687 | Msa0379680:intron | 40.0% | |
| TCACTTGCAATTTCATGACG+TGG | + | chr3_1:81046711-81046730 | Msa0379690:intron | 40.0% | |
| ATGACGTGGTTGTGAATTCA+TGG | + | chr3_1:81046725-81046744 | Msa0379690:intron | 40.0% | |
| GTTGTGAATTCATGGAAGCA+TGG | + | chr3_1:81046733-81046752 | Msa0379690:intron | 40.0% | |
| !! | CTCTTTTGGGTCATGTTAAC+CGG | + | chr3_1:81046833-81046852 | Msa0379690:intron | 40.0% |
| AGCCTCTTTAAACAATGTCC+CGG | - | chr3_1:81046864-81046883 | Msa0379680:intron | 40.0% | |
| GAAATGTTAACCAATGTCCG+GGG | - | chr3_1:81046999-81047018 | Msa0379680:intron | 40.0% | |
| ACTCGTGGGTTTGTATTAGT+GGG | + | chr3_1:81047262-81047281 | Msa0379690:intron | 40.0% | |
| ACCAACAATTCATGGCATCA+CGG | + | chr3_1:81047387-81047406 | Msa0379690:intron | 40.0% | |
| TTAGTATCAGAGACAATCGG+TGG | - | chr3_1:81047494-81047513 | Msa0379680:intron | 40.0% | |
| GCAGTCTTGAACTTCTATTG+AGG | + | chr3_1:81047559-81047578 | Msa0379690:exon | 40.0% | |
| CAAGAAACACCGAAATGACA+TGG | - | chr3_1:81047624-81047643 | Msa0379680:three_prime_UTR | 40.0% | |
| !! | CATGTCATTTCGGTGTTTCT+TGG | + | chr3_1:81047622-81047641 | Msa0379690:three_prime_UTR | 40.0% |
| !! | ATTTCGGTGTTTCTTGGCTT+TGG | + | chr3_1:81047628-81047647 | Msa0379690:three_prime_UTR | 40.0% |
| CAGGATGTAAGAAGCAAATG+TGG | + | chr3_1:81047651-81047670 | Msa0379690:three_prime_UTR | 40.0% | |
| GATGTAAGAAGCAAATGTGG+CGG | + | chr3_1:81047654-81047673 | Msa0379690:three_prime_UTR | 40.0% | |
| CCAAGTAGAAACCAACACTA+GGG | - | chr3_1:81047754-81047773 | Msa0379680:three_prime_UTR | 40.0% | |
| ACCAAGTAGAAACCAACACT+AGG | - | chr3_1:81047755-81047774 | Msa0379680:three_prime_UTR | 40.0% | |
| ! | TGACTTGTAAACCGATGTCG+CGG | - | chr3_1:81044798-81044817 | Msa0379680:three_prime_UTR | 45.0% |
| AGTCATCATGATCCTCGCAA+TGG | + | chr3_1:81044813-81044832 | Msa0379690:CDS | 45.0% | |
| GGAAGATTAAAGCCATTGCG+AGG | - | chr3_1:81044828-81044847 | Msa0379680:three_prime_UTR | 45.0% | |
| ! | TTTGGAATCGGAGTTTAGCG+AGG | - | chr3_1:81044879-81044898 | Msa0379680:three_prime_UTR | 45.0% |
| !! | GGCGGATCTGGATTTGTTTT+TGG | - | chr3_1:81044971-81044990 | Msa0379680:three_prime_UTR | 45.0% |
| TTCGTTTGCGAGGTTGTTGA+TGG | - | chr3_1:81044992-81045011 | Msa0379680:three_prime_UTR | 45.0% | |
| !! | GTTAGCGGATTTGACTGAGT+CGG | + | chr3_1:81045248-81045267 | Msa0379690:CDS | 45.0% |
| !! | CGTTGGGAGAGTGTTATGAA+GGG | + | chr3_1:81045307-81045326 | Msa0379690:CDS | 45.0% |
| TCTACAGGCACAGAATACTG+TGG | - | chr3_1:81045387-81045406 | Msa0379680:three_prime_UTR | 45.0% | |
| !! | TGCCTGTAGAAGCACTTAAC+AGG | + | chr3_1:81045397-81045416 | Msa0379690:CDS | 45.0% |
| !! | TGAACCCCACAATCTGGTTT+TGG | + | chr3_1:81046296-81046315 | Msa0379690:intron | 45.0% |
| GGTGCTAAATTAGACAGACG+TGG | - | chr3_1:81046513-81046532 | Msa0379680:intron | 45.0% | |
| ACTGGTAAGTAGCAACGACT+CGG | - | chr3_1:81046534-81046553 | Msa0379680:intron | 45.0% | |
| CAAAAACACGAGAAGCCACA+TGG | + | chr3_1:81046566-81046585 | Msa0379690:intron | 45.0% | |
| CTCTTTAAACAATGTCCCGG+AGG | - | chr3_1:81046861-81046880 | Msa0379680:intron | 45.0% | |
| CTCCGGGACATTGTTTAAAG+AGG | + | chr3_1:81046859-81046878 | Msa0379690:intron | 45.0% | |
| CACTCGTGGGTTTGTATTAG+TGG | + | chr3_1:81047261-81047280 | Msa0379690:intron | 45.0% | |
| AGCGAAAAGACATGAGGTTG+AGG | - | chr3_1:81047317-81047336 | Msa0379680:intron | 45.0% | |
| ACCGTGATGCCATGAATTGT+TGG | - | chr3_1:81047391-81047410 | Msa0379680:intron | 45.0% | |
| CAATTCATGGCATCACGGTA+TGG | + | chr3_1:81047392-81047411 | Msa0379690:intron | 45.0% | |
| ! | GCTATGGCACCATGTCATTT+CGG | + | chr3_1:81047612-81047631 | Msa0379690:three_prime_UTR | 45.0% |
| !! | CCCTAGTGTTGGTTTCTACT+TGG | + | chr3_1:81047751-81047770 | Msa0379690:three_prime_UTR | 45.0% |
| !! | AAATTATAAAATACAAAAAT+TGG | - | chr3_1:81046621-81046640 | Msa0379680:intron | 5.0% |
| ! | GTTTGCGAGGTTGTTGATGG+CGG | - | chr3_1:81044989-81045008 | Msa0379680:three_prime_UTR | 50.0% |
| AACCTCGCAAACGAAGCCTT+AGG | + | chr3_1:81044997-81045016 | Msa0379690:CDS | 50.0% | |
| ! | AGATACGAAGCGGCGTCTTT+TGG | - | chr3_1:81045051-81045070 | Msa0379680:three_prime_UTR | 50.0% |
| TTCACCTTGCTCAAGCGAAC+CGG | - | chr3_1:81045157-81045176 | Msa0379680:three_prime_UTR | 50.0% | |
| AAACTCGCAACGAGTGAACG+CGG | + | chr3_1:81045210-81045229 | Msa0379690:CDS | 50.0% | |
| CACCAAGCTTTCGCGTTCTT+CGG | - | chr3_1:81045285-81045304 | Msa0379680:three_prime_UTR | 50.0% | |
| !! | GCGTTGGGAGAGTGTTATGA+AGG | + | chr3_1:81045306-81045325 | Msa0379690:CDS | 50.0% |
| AGGTCACTGCTGTTAGACAG+CGG | + | chr3_1:81045903-81045922 | Msa0379690:intron | 50.0% | |
| ACTACGTGAACCCCACAATC+TGG | + | chr3_1:81046290-81046309 | Msa0379690:intron | 50.0% | |
| AGGAGAAGCAACATCCCATG+TGG | - | chr3_1:81046584-81046603 | Msa0379680:intron | 50.0% | |
| TGTTTCCTTAACCAGTGCCC+CGG | + | chr3_1:81046979-81046998 | Msa0379690:intron | 50.0% | |
| ! | AATGTGGCGGCGCTTTGTTA+AGG | + | chr3_1:81047667-81047686 | Msa0379690:three_prime_UTR | 50.0% |
| CAAGCGATGTACCGCGACAT+CGG | + | chr3_1:81044784-81044803 | Msa0379690:CDS | 55.0% | |
| GTGGAATTCCGTGCATGCTG+AGG | - | chr3_1:81044849-81044868 | Msa0379680:three_prime_UTR | 55.0% | |
| ! | GCAAAGCGTCACTTCGTACG+TGG | + | chr3_1:81044916-81044935 | Msa0379690:intron | 55.0% |
| !! | GAGGTTGTTGATGGCGGATC+TGG | - | chr3_1:81044983-81045002 | Msa0379680:three_prime_UTR | 55.0% |
| !!! | CGCTTTTTCGGCTTCGCCTA+AGG | - | chr3_1:81045016-81045035 | Msa0379680:three_prime_UTR | 55.0% |
| ! | GGCGTCGAGTGATTCAAGAG+CGG | - | chr3_1:81045115-81045134 | Msa0379680:three_prime_UTR | 55.0% |
| TCGCTTGAGCAAGGTGAACG+TGG | + | chr3_1:81045159-81045178 | Msa0379690:intron | 55.0% | |
| ! | TGAACGCGGACGAGTTGACT+CGG | + | chr3_1:81045224-81045243 | Msa0379690:CDS | 55.0% |
| !! | ACGAGTTGACTCGGCGTTAG+CGG | + | chr3_1:81045233-81045252 | Msa0379690:CDS | 55.0% |
| GTCCGAAGAACGCGAAAGCT+TGG | + | chr3_1:81045280-81045299 | Msa0379690:CDS | 55.0% | |
| !! | GCGAAAGCTTGGTGTGCGTT+GGG | + | chr3_1:81045291-81045310 | Msa0379690:CDS | 55.0% |
| GTCATGTTAACCGGTGCCTC+CGG | + | chr3_1:81046842-81046861 | Msa0379690:intron | 55.0% | |
| TCATGTTAACCGGTGCCTCC+GGG | + | chr3_1:81046843-81046862 | Msa0379690:intron | 55.0% | |
| ! | AAACAATGTCCCGGAGGCAC+CGG | - | chr3_1:81046855-81046874 | Msa0379680:intron | 55.0% |
| !! | AATGTCCGGGGCACTGGTTA+AGG | - | chr3_1:81046987-81047006 | Msa0379680:intron | 55.0% |
| TTAACCAGTGCCCCGGACAT+TGG | + | chr3_1:81046986-81047005 | Msa0379690:intron | 55.0% | |
| TTAACCAATGTCCGGGGCAC+TGG | - | chr3_1:81046993-81047012 | Msa0379680:intron | 55.0% | |
| !! | CGGTGTTTCTTGGCTTTGGC+AGG | + | chr3_1:81047632-81047651 | Msa0379690:three_prime_UTR | 55.0% |
| CGCCTAAGGCTTCGTTTGCG+AGG | - | chr3_1:81045002-81045021 | Msa0379680:three_prime_UTR | 60.0% | |
| ACCTTGCTCAAGCGAACCGG+CGG | - | chr3_1:81045154-81045173 | Msa0379680:three_prime_UTR | 60.0% | |
| !! | CGCGAAAGCTTGGTGTGCGT+TGG | + | chr3_1:81045290-81045309 | Msa0379690:CDS | 60.0% |
| GGCGGCGAGAGGAGACAACG+CGG | - | chr3_1:81045136-81045155 | Msa0379680:three_prime_UTR | 70.0% | |
| GCGTTGTCTCCTCTCGCCGC+CGG | + | chr3_1:81045135-81045154 | Msa0379690:CDS | 70.0% | |
| TCAAGCGAACCGGCGGCGAG+AGG | - | chr3_1:81045147-81045166 | Msa0379680:three_prime_UTR | 70.0% | |
| !! | GCCGCCGGTTCGCTTGAGCA+AGG | + | chr3_1:81045150-81045169 | Msa0379690:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 81044766 | 81047854 | 81044766 | ID=Msa0379690;Name=Msa0379690 |
| chr3_1 | mRNA | 81044766 | 81047854 | 81044766 | ID=Msa0379690-mRNA-1;Parent=Msa0379690;Name=Msa0379690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.33|0.25|1|0|0|4|286|217 |
| chr3_1 | exon | 81044766 | 81044930 | 81044766 | ID=Msa0379690-mRNA-1:exon:20307;Parent=Msa0379690-mRNA-1 |
| chr3_1 | exon | 81044946 | 81045156 | 81044946 | ID=Msa0379690-mRNA-1:exon:20308;Parent=Msa0379690-mRNA-1 |
| chr3_1 | exon | 81045172 | 81045418 | 81045172 | ID=Msa0379690-mRNA-1:exon:20309;Parent=Msa0379690-mRNA-1 |
| chr3_1 | exon | 81047538 | 81047854 | 81047538 | ID=Msa0379690-mRNA-1:exon:20310;Parent=Msa0379690-mRNA-1 |
| chr3_1 | CDS | 81044766 | 81044930 | 81044766 | ID=Msa0379690-mRNA-1:cds;Parent=Msa0379690-mRNA-1 |
| chr3_1 | CDS | 81044946 | 81045156 | 81044946 | ID=Msa0379690-mRNA-1:cds;Parent=Msa0379690-mRNA-1 |
| chr3_1 | CDS | 81045172 | 81045418 | 81045172 | ID=Msa0379690-mRNA-1:cds;Parent=Msa0379690-mRNA-1 |
| chr3_1 | CDS | 81047538 | 81047568 | 81047538 | ID=Msa0379690-mRNA-1:cds;Parent=Msa0379690-mRNA-1 |
| chr3_1 | three_prime_UTR | 81047569 | 81047854 | 81047569 | ID=Msa0379690-mRNA-1:three_prime_utr;Parent=Msa0379690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
