Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329300 | PIA64528.1 | 98.387 | 62 | 1 | 0 | 1 | 62 | 42 | 103 | 2.12e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329300 | sp|P49689|RS30_ARATH | 95.161 | 62 | 3 | 0 | 1 | 62 | 1 | 62 | 6.41e-29 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329300 | A0A6A5LMU4 | 96.774 | 62 | 2 | 0 | 1 | 62 | 351 | 412 | 8.45e-36 | 133 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa1329300 | 0.812468 | 4.176866e-51 | -8.615850e-47 |
| Msa0007850 | Msa1329300 | 0.802486 | 5.484382e-49 | -8.615850e-47 |
| Msa0033880 | Msa1329300 | 0.829842 | 4.104637e-55 | -8.615850e-47 |
| Msa0047160 | Msa1329300 | 0.820665 | 6.083490e-53 | -8.615850e-47 |
| Msa0048180 | Msa1329300 | 0.830463 | 2.895447e-55 | -8.615850e-47 |
| Msa0076040 | Msa1329300 | 0.818100 | 2.338235e-52 | -8.615850e-47 |
| Msa0077010 | Msa1329300 | 0.802583 | 5.237613e-49 | -8.615850e-47 |
| Msa0094470 | Msa1329300 | 0.809004 | 2.343607e-50 | -8.615850e-47 |
| Msa0097600 | Msa1329300 | 0.824449 | 8.023587e-54 | -8.615850e-47 |
| Msa0116130 | Msa1329300 | 0.816775 | 4.647806e-52 | -8.615850e-47 |
| Msa0116670 | Msa1329300 | 0.812615 | 3.878727e-51 | -8.615850e-47 |
| Msa0603320 | Msa1329300 | 0.814665 | 1.372160e-51 | -8.615850e-47 |
| Msa0610390 | Msa1329300 | 0.836838 | 7.401816e-57 | -8.615850e-47 |
| Msa0615580 | Msa1329300 | 0.852836 | 3.554796e-61 | -8.615850e-47 |
| Msa0619860 | Msa1329300 | 0.809043 | 2.299814e-50 | -8.615850e-47 |
| Msa0625570 | Msa1329300 | 0.800317 | 1.525418e-48 | -8.615850e-47 |
| Msa0631250 | Msa1329300 | 0.852319 | 4.989949e-61 | -8.615850e-47 |
| Msa0633570 | Msa1329300 | 0.801556 | 8.515289e-49 | -8.615850e-47 |
| Msa0650920 | Msa1329300 | 0.823940 | 1.056525e-53 | -8.615850e-47 |
| Msa0654870 | Msa1329300 | 0.847195 | 1.348640e-59 | -8.615850e-47 |
| Msa0656810 | Msa1329300 | 0.832577 | 8.733987e-56 | -8.615850e-47 |
| Msa0666230 | Msa1329300 | 0.846825 | 1.702352e-59 | -8.615850e-47 |
| Msa0687230 | Msa1329300 | 0.815602 | 8.498202e-52 | -8.615850e-47 |
| Msa0687630 | Msa1329300 | 0.813445 | 2.550897e-51 | -8.615850e-47 |
| Msa0692940 | Msa1329300 | 0.803165 | 3.971304e-49 | -8.615850e-47 |
| Msa0705000 | Msa1329300 | 0.819893 | 9.141239e-53 | -8.615850e-47 |
| Msa0705040 | Msa1329300 | 0.814669 | 1.369583e-51 | -8.615850e-47 |
| Msa0707390 | Msa1329300 | 0.801967 | 7.013290e-49 | -8.615850e-47 |
| Msa0729200 | Msa1329300 | 0.857056 | 2.116035e-62 | -8.615850e-47 |
| Msa0738100 | Msa1329300 | 0.810538 | 1.096860e-50 | -8.615850e-47 |
| Msa0766080 | Msa1329300 | 0.829202 | 5.872252e-55 | -8.615850e-47 |
| Msa0769590 | Msa1329300 | 0.860181 | 2.470074e-63 | -8.615850e-47 |
| Msa0785130 | Msa1329300 | 0.864200 | 1.442537e-64 | -8.615850e-47 |
| Msa0805500 | Msa1329300 | 0.824221 | 9.076253e-54 | -8.615850e-47 |
| Msa0806880 | Msa1329300 | 0.858924 | 5.897087e-63 | -8.615850e-47 |
| Msa0817540 | Msa1329300 | 0.841354 | 4.999757e-58 | -8.615850e-47 |
| Msa0825270 | Msa1329300 | 0.806425 | 8.275952e-50 | -8.615850e-47 |
| Msa0826510 | Msa1329300 | 0.810300 | 1.234638e-50 | -8.615850e-47 |
| Msa0126840 | Msa1329300 | 0.834258 | 3.325694e-56 | -8.615850e-47 |
| Msa0127040 | Msa1329300 | 0.819062 | 1.414458e-52 | -8.615850e-47 |
| Msa0127850 | Msa1329300 | 0.831634 | 1.493243e-55 | -8.615850e-47 |
| Msa0128860 | Msa1329300 | 0.810862 | 9.331806e-51 | -8.615850e-47 |
| Msa0142110 | Msa1329300 | 0.822056 | 2.905231e-53 | -8.615850e-47 |
| Msa0165950 | Msa1329300 | 0.821624 | 3.656856e-53 | -8.615850e-47 |
| Msa0166750 | Msa1329300 | 0.821637 | 3.632925e-53 | -8.615850e-47 |
| Msa0167480 | Msa1329300 | 0.849948 | 2.330063e-60 | -8.615850e-47 |
| Msa0169610 | Msa1329300 | 0.823320 | 1.475516e-53 | -8.615850e-47 |
| Msa0173530 | Msa1329300 | 0.810932 | 9.013382e-51 | -8.615850e-47 |
| Msa0174000 | Msa1329300 | 0.827340 | 1.651811e-54 | -8.615850e-47 |
| Msa0174730 | Msa1329300 | 0.809041 | 2.301242e-50 | -8.615850e-47 |
| Msa0180020 | Msa1329300 | 0.818205 | 2.213398e-52 | -8.615850e-47 |
| Msa0181610 | Msa1329300 | 0.825532 | 4.453360e-54 | -8.615850e-47 |
| Msa0187930 | Msa1329300 | 0.827504 | 1.508489e-54 | -8.615850e-47 |
| Msa0194540 | Msa1329300 | 0.824188 | 9.239740e-54 | -8.615850e-47 |
| Msa0199690 | Msa1329300 | 0.800340 | 1.508669e-48 | -8.615850e-47 |
| Msa0218830 | Msa1329300 | 0.812661 | 3.788741e-51 | -8.615850e-47 |
| Msa0221030 | Msa1329300 | 0.873260 | 1.687811e-67 | -8.615850e-47 |
| Msa0223170 | Msa1329300 | 0.803821 | 2.903348e-49 | -8.615850e-47 |
| Msa0230520 | Msa1329300 | 0.803376 | 3.589813e-49 | -8.615850e-47 |
| Msa0231100 | Msa1329300 | 0.822582 | 2.192623e-53 | -8.615850e-47 |
| Msa1227690 | Msa1329300 | 0.857029 | 2.156229e-62 | -8.615850e-47 |
| Msa1230580 | Msa1329300 | 0.825031 | 5.851670e-54 | -8.615850e-47 |
| Msa1241190 | Msa1329300 | 0.818339 | 2.063866e-52 | -8.615850e-47 |
| Msa1254710 | Msa1329300 | 0.808836 | 2.546923e-50 | -8.615850e-47 |
| Msa1260530 | Msa1329300 | 0.802379 | 5.769805e-49 | -8.615850e-47 |
| Msa1265630 | Msa1329300 | 0.821594 | 3.716037e-53 | -8.615850e-47 |
| Msa1270620 | Msa1329300 | 0.832476 | 9.251087e-56 | -8.615850e-47 |
| Msa1270690 | Msa1329300 | 0.832670 | 8.281156e-56 | -8.615850e-47 |
| Msa1271580 | Msa1329300 | 0.802148 | 6.436234e-49 | -8.615850e-47 |
| Msa1294840 | Msa1329300 | 0.803265 | 3.785072e-49 | -8.615850e-47 |
| Msa1306990 | Msa1329300 | 0.807797 | 4.240719e-50 | -8.615850e-47 |
| Msa1329300 | Msa1331250 | 0.816483 | 5.404537e-52 | -8.615850e-47 |
| Msa1329300 | Msa1331710 | 0.869366 | 3.267250e-66 | -8.615850e-47 |
| Msa1329300 | Msa1343290 | 0.817674 | 2.917283e-52 | -8.615850e-47 |
| Msa1329300 | Msa1349570 | 0.874837 | 4.943052e-68 | -8.615850e-47 |
| Msa1329300 | Msa1351540 | 0.804776 | 1.836574e-49 | -8.615850e-47 |
| Msa1329300 | Msa1355700 | 0.803959 | 2.717107e-49 | -8.615850e-47 |
| Msa1329300 | Msa1363330 | 0.842407 | 2.635213e-58 | -8.615850e-47 |
| Msa1329300 | Msa1369190 | 0.869515 | 2.921947e-66 | -8.615850e-47 |
| Msa1329300 | Msa1379760 | 0.815334 | 9.750447e-52 | -8.615850e-47 |
| Msa1329300 | Msa1386600 | 0.841236 | 5.371495e-58 | -8.615850e-47 |
| Msa1329300 | Msa1387410 | 0.817005 | 4.125836e-52 | -8.615850e-47 |
| Msa1329300 | Msa1413500 | 0.857730 | 1.337392e-62 | -8.615850e-47 |
| Msa1329300 | Msa1426490 | 0.808060 | 3.727716e-50 | -8.615850e-47 |
| Msa1329300 | Msa1427160 | 0.803903 | 2.791845e-49 | -8.615850e-47 |
| Msa1329300 | Msa1427560 | 0.840931 | 6.458967e-58 | -8.615850e-47 |
| Msa1329300 | Msa1437280 | 0.800569 | 1.355415e-48 | -8.615850e-47 |
| Msa1329300 | Msa1448690 | 0.815383 | 9.507442e-52 | -8.615850e-47 |
| Msa1329300 | Msa1450280 | 0.852290 | 5.087143e-61 | -8.615850e-47 |
| Msa1329300 | Msa1456050 | 0.802850 | 4.613457e-49 | -8.615850e-47 |
| Msa1329300 | Msa1459910 | 0.801461 | 8.908786e-49 | -8.615850e-47 |
| Msa1329300 | Msa1462860 | 0.810059 | 1.391227e-50 | -8.615850e-47 |
| Msa0369450 | Msa1329300 | 0.814470 | 1.515725e-51 | -8.615850e-47 |
| Msa0436200 | Msa1329300 | 0.805715 | 1.167602e-49 | -8.615850e-47 |
| Msa0443390 | Msa1329300 | 0.871669 | 5.730000e-67 | -8.615850e-47 |
| Msa0479330 | Msa1329300 | 0.802288 | 6.023668e-49 | -8.615850e-47 |
| Msa1019240 | Msa1329300 | 0.854510 | 1.173557e-61 | -8.615850e-47 |
| Msa1019260 | Msa1329300 | 0.851506 | 8.492143e-61 | -8.615850e-47 |
| Msa1025940 | Msa1329300 | 0.810213 | 1.289091e-50 | -8.615850e-47 |
| Msa1039520 | Msa1329300 | 0.833263 | 5.896449e-56 | -8.615850e-47 |
| Msa1070390 | Msa1329300 | 0.833768 | 4.411165e-56 | -8.615850e-47 |
| Msa1072710 | Msa1329300 | 0.841709 | 4.030475e-58 | -8.615850e-47 |
| Msa1089270 | Msa1329300 | 0.804805 | 1.811385e-49 | -8.615850e-47 |
| Msa1104140 | Msa1329300 | 0.807151 | 5.814599e-50 | -8.615850e-47 |
| Msa1104210 | Msa1329300 | 0.838164 | 3.383945e-57 | -8.615850e-47 |
| Msa0244780 | Msa1329300 | 0.828767 | 7.484413e-55 | -8.615850e-47 |
| Msa0248460 | Msa1329300 | 0.806967 | 6.359722e-50 | -8.615850e-47 |
| Msa0262480 | Msa1329300 | 0.864549 | 1.122492e-64 | -8.615850e-47 |
| Msa0268130 | Msa1329300 | 0.813221 | 2.856936e-51 | -8.615850e-47 |
| Msa0270210 | Msa1329300 | 0.801772 | 7.691608e-49 | -8.615850e-47 |
| Msa0280430 | Msa1329300 | 0.818160 | 2.265493e-52 | -8.615850e-47 |
| Msa0296250 | Msa1329300 | 0.807798 | 4.238106e-50 | -8.615850e-47 |
| Msa0298990 | Msa1329300 | 0.816349 | 5.788468e-52 | -8.615850e-47 |
| Msa0300350 | Msa1329300 | 0.897796 | 9.928177e-77 | -8.615850e-47 |
| Msa0304660 | Msa1329300 | 0.805373 | 1.377725e-49 | -8.615850e-47 |
| Msa0331700 | Msa1329300 | 0.808685 | 2.742861e-50 | -8.615850e-47 |
| Msa0348830 | Msa1329300 | 0.807949 | 3.935781e-50 | -8.615850e-47 |
| Msa1122820 | Msa1329300 | 0.819881 | 9.202056e-53 | -8.615850e-47 |
| Msa1126510 | Msa1329300 | 0.812991 | 3.208897e-51 | -8.615850e-47 |
| Msa1126830 | Msa1329300 | 0.809059 | 2.281322e-50 | -8.615850e-47 |
| Msa1127540 | Msa1329300 | 0.814630 | 1.397296e-51 | -8.615850e-47 |
| Msa1165780 | Msa1329300 | 0.834693 | 2.586728e-56 | -8.615850e-47 |
| Msa1166860 | Msa1329300 | 0.801226 | 9.952143e-49 | -8.615850e-47 |
| Msa1166870 | Msa1329300 | 0.859146 | 5.061839e-63 | -8.615850e-47 |
| Msa1176980 | Msa1329300 | 0.803831 | 2.889390e-49 | -8.615850e-47 |
| Msa1179950 | Msa1329300 | 0.814758 | 1.308769e-51 | -8.615850e-47 |
| Msa1179980 | Msa1329300 | 0.834696 | 2.581622e-56 | -8.615850e-47 |
| Msa1184370 | Msa1329300 | 0.801531 | 8.618680e-49 | -8.615850e-47 |
| Msa1192850 | Msa1329300 | 0.805143 | 1.539061e-49 | -8.615850e-47 |
| Msa1201810 | Msa1329300 | 0.800991 | 1.111252e-48 | -8.615850e-47 |
| Msa1201830 | Msa1329300 | 0.818178 | 2.244947e-52 | -8.615850e-47 |
| Msa1202580 | Msa1329300 | 0.807230 | 5.594577e-50 | -8.615850e-47 |
| Msa1208020 | Msa1329300 | 0.825584 | 4.328507e-54 | -8.615850e-47 |
| Msa0526540 | Msa1329300 | 0.846387 | 2.242579e-59 | -8.615850e-47 |
| Msa0527150 | Msa1329300 | 0.831808 | 1.352938e-55 | -8.615850e-47 |
| Msa0531650 | Msa1329300 | 0.804905 | 1.725670e-49 | -8.615850e-47 |
| Msa0534750 | Msa1329300 | 0.819241 | 1.287902e-52 | -8.615850e-47 |
| Msa0550570 | Msa1329300 | 0.809374 | 1.953329e-50 | -8.615850e-47 |
| Msa0561430 | Msa1329300 | 0.832466 | 9.301214e-56 | -8.615850e-47 |
| Msa0571920 | Msa1329300 | 0.835471 | 1.646145e-56 | -8.615850e-47 |
| Msa0576940 | Msa1329300 | 0.845493 | 3.924669e-59 | -8.615850e-47 |
| Msa0581070 | Msa1329300 | 0.818143 | 2.286089e-52 | -8.615850e-47 |
| Msa0581110 | Msa1329300 | 0.805956 | 1.039306e-49 | -8.615850e-47 |
| Msa0593700 | Msa1329300 | 0.813708 | 2.232457e-51 | -8.615850e-47 |
| Msa0865620 | Msa1329300 | 0.803126 | 4.045863e-49 | -8.615850e-47 |
| Msa0881270 | Msa1329300 | 0.804561 | 2.035875e-49 | -8.615850e-47 |
| Msa0888810 | Msa1329300 | 0.819087 | 1.395916e-52 | -8.615850e-47 |
| Msa0913240 | Msa1329300 | 0.804904 | 1.726716e-49 | -8.615850e-47 |
| Msa0943170 | Msa1329300 | 0.821721 | 3.473323e-53 | -8.615850e-47 |
| Msa0945480 | Msa1329300 | 0.812297 | 4.550351e-51 | -8.615850e-47 |
| Msa0960830 | Msa1329300 | 0.805493 | 1.299612e-49 | -8.615850e-47 |
| Msa0961350 | Msa1329300 | 0.800048 | 1.730475e-48 | -8.615850e-47 |
| Msa0963020 | Msa1329300 | 0.821797 | 3.334710e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329300 | MtrunA17_Chr4g0056141 | 100.000 | 62 | 0 | 0 | 1 | 62 | 1 | 62 | 2.23e-39 | 123 |
| Msa1329300 | MtrunA17_Chr5g0399231 | 100.000 | 62 | 0 | 0 | 1 | 62 | 1 | 62 | 2.23e-39 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329300 | AT2G19750.1 | 95.161 | 62 | 3 | 0 | 1 | 62 | 1 | 62 | 6.52e-30 | 100 |
| Msa1329300 | AT5G56670.1 | 95.161 | 62 | 3 | 0 | 1 | 62 | 1 | 62 | 6.52e-30 | 100 |
| Msa1329300 | AT4G29390.1 | 95.161 | 62 | 3 | 0 | 1 | 62 | 1 | 62 | 6.52e-30 | 100 |
Find 32 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTTGCTTTGCAACTTT+TGG | 0.146380 | 8_4:+47826897 | None:intergenic |
| ACAAATAGATCGAGCATTTC+TGG | 0.201747 | 8_4:-47827160 | Msa1329300:five_prime_UTR |
| GCAAATAATTTGACCTTTGC+TGG | 0.248572 | 8_4:-47826407 | Msa1329300:three_prime_UTR |
| CATTTCTGGTTTGAGTTTCT+AGG | 0.249983 | 8_4:-47827146 | Msa1329300:five_prime_UTR |
| TTTGTATTGGCAGGGGTTAA+AGG | 0.327284 | 8_4:+47827178 | None:intergenic |
| TATTCGACCATATGATTGTT+TGG | 0.335567 | 8_4:-47826491 | Msa1329300:three_prime_UTR |
| TTGCTCGTGCTGGAAAAGTT+AGG | 0.361428 | 8_4:-47826929 | Msa1329300:CDS |
| CTCGATCTATTTGTATTGGC+AGG | 0.369976 | 8_4:+47827169 | None:intergenic |
| ATTATTGCAGTTGTGGGATT+CGG | 0.384343 | 8_4:-47826689 | Msa1329300:intron |
| AATGCTCGATCTATTTGTAT+TGG | 0.404236 | 8_4:+47827165 | None:intergenic |
| GACAAATTCGTCTTCACAAT+GGG | 0.434236 | 8_4:-47827069 | Msa1329300:intron |
| ATTTCTGGTTTGAGTTTCTA+GGG | 0.438640 | 8_4:-47827145 | Msa1329300:five_prime_UTR |
| TGCTCGTGCTGGAAAAGTTA+GGG | 0.448013 | 8_4:-47826928 | Msa1329300:CDS |
| CATGGTTCCCTTGCTCGTGC+TGG | 0.450019 | 8_4:-47826939 | Msa1329300:CDS |
| TTTATTTGATTCATGAATTG+TGG | 0.463970 | 8_4:-47826584 | Msa1329300:three_prime_UTR |
| CGATTTGCAGCAGCAGCTCT+CGG | 0.470283 | 8_4:+47827116 | None:intergenic |
| CAAATAATTTGACCTTTGCT+GGG | 0.477286 | 8_4:-47826406 | Msa1329300:three_prime_UTR |
| AAAGTGAAGATGATGCTTAG+TGG | 0.503837 | 8_4:-47826639 | Msa1329300:exon |
| CGATCTATTTGTATTGGCAG+GGG | 0.524264 | 8_4:+47827171 | None:intergenic |
| TCGATCTATTTGTATTGGCA+GGG | 0.525257 | 8_4:+47827170 | None:intergenic |
| AGTTACCGGCGGTGACGAAA+CGG | 0.526875 | 8_4:+47826826 | None:intergenic |
| CGCTTGTGAGCACGGCCTCG+TGG | 0.529866 | 8_4:+47826864 | None:intergenic |
| ATTGCATACGCTTGTGAGCA+CGG | 0.548283 | 8_4:+47826856 | None:intergenic |
| AATTACAAAATGGGTTGGTG+TGG | 0.553999 | 8_4:-47826463 | Msa1329300:three_prime_UTR |
| TGAAATGCAGGTAAAGTGCA+TGG | 0.568662 | 8_4:-47826957 | Msa1329300:intron |
| TGACAAATTCGTCTTCACAA+TGG | 0.586924 | 8_4:-47827070 | Msa1329300:exon |
| GCTCGTGCTGGAAAAGTTAG+GGG | 0.589768 | 8_4:-47826927 | Msa1329300:CDS |
| TTTATGCACAATTTGTACGT+GGG | 0.604062 | 8_4:-47826317 | Msa1329300:three_prime_UTR |
| GTTTATGCACAATTTGTACG+TGG | 0.618169 | 8_4:-47826318 | Msa1329300:three_prime_UTR |
| AATCGCCGTTTCGTCACCGC+CGG | 0.622871 | 8_4:-47826831 | Msa1329300:intron |
| GTGGGATTCGGAAAGAAGCG+TGG | 0.638925 | 8_4:-47826677 | Msa1329300:CDS |
| GACAAGAAGAAGCAGCCACG+AGG | 0.675762 | 8_4:-47826879 | Msa1329300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTGTTCTGATTT+TGG | - | chr8_4:47826746-47826765 | Msa1329300:intron | 15.0% |
| !!! | TTTGGTTTTTAATTACAAAA+TGG | - | chr8_4:47826997-47827016 | Msa1329300:intron | 15.0% |
| !!! | TTGGTTTTTAATTACAAAAT+GGG | - | chr8_4:47826998-47827017 | Msa1329300:intron | 15.0% |
| !!! | TTTTTTTTTTGTTCTGATTT+TGG | - | chr8_4:47826746-47826765 | Msa1329300:intron | 15.0% |
| !!! | TTTGGTTTTTAATTACAAAA+TGG | - | chr8_4:47826997-47827016 | Msa1329300:intron | 15.0% |
| !!! | TTGGTTTTTAATTACAAAAT+GGG | - | chr8_4:47826998-47827017 | Msa1329300:intron | 15.0% |
| !! | TGATACGATTTCTATAAAAT+TGG | - | chr8_4:47826440-47826459 | Msa1329300:three_prime_UTR | 20.0% |
| !! | TTTATTTGATTCATGAATTG+TGG | - | chr8_4:47826886-47826905 | Msa1329300:CDS | 20.0% |
| !! | TTAAAAACCAAACAATCATA+TGG | + | chr8_4:47826989-47827008 | None:intergenic | 20.0% |
| !!! | TTTTTAATTACAAAATGGGT+TGG | - | chr8_4:47827002-47827021 | Msa1329300:intron | 20.0% |
| !! | TGATACGATTTCTATAAAAT+TGG | - | chr8_4:47826440-47826459 | Msa1329300:three_prime_UTR | 20.0% |
| !! | TTTATTTGATTCATGAATTG+TGG | - | chr8_4:47826886-47826905 | Msa1329300:CDS | 20.0% |
| !! | TTAAAAACCAAACAATCATA+TGG | + | chr8_4:47826989-47827008 | None:intergenic | 20.0% |
| !!! | TTTTTAATTACAAAATGGGT+TGG | - | chr8_4:47827002-47827021 | Msa1329300:intron | 20.0% |
| ! | AGAAAGAATGATAAAGTTAC+CGG | + | chr8_4:47826661-47826680 | None:intergenic | 25.0% |
| ! | TATGATTATTATTGCAGTTG+TGG | - | chr8_4:47826774-47826793 | Msa1329300:intron | 25.0% |
| ! | ATGATTATTATTGCAGTTGT+GGG | - | chr8_4:47826775-47826794 | Msa1329300:intron | 25.0% |
| !!! | TTCTTTGTTTTAAGACATTG+AGG | - | chr8_4:47827113-47827132 | Msa1329300:five_prime_UTR | 25.0% |
| ! | AGAAAGAATGATAAAGTTAC+CGG | + | chr8_4:47826661-47826680 | None:intergenic | 25.0% |
| ! | TATGATTATTATTGCAGTTG+TGG | - | chr8_4:47826774-47826793 | Msa1329300:intron | 25.0% |
| ! | ATGATTATTATTGCAGTTGT+GGG | - | chr8_4:47826775-47826794 | Msa1329300:intron | 25.0% |
| !!! | TTCTTTGTTTTAAGACATTG+AGG | - | chr8_4:47827113-47827132 | Msa1329300:five_prime_UTR | 25.0% |
| AATGCTCGATCTATTTGTAT+TGG | + | chr8_4:47826308-47826327 | None:intergenic | 30.0% | |
| !! | ATTTCTGGTTTGAGTTTCTA+GGG | - | chr8_4:47826325-47826344 | Msa1329300:three_prime_UTR | 30.0% |
| ! | TGAATCGAAATTTGAAATGC+AGG | - | chr8_4:47826501-47826520 | Msa1329300:three_prime_UTR | 30.0% |
| !! | TGAAAGAATTTTGTTGTGCT+AGG | - | chr8_4:47826936-47826955 | Msa1329300:CDS | 30.0% |
| TATTCGACCATATGATTGTT+TGG | - | chr8_4:47826979-47826998 | Msa1329300:intron | 30.0% | |
| CAAATAATTTGACCTTTGCT+GGG | - | chr8_4:47827064-47827083 | Msa1329300:intron | 30.0% | |
| TTTATGCACAATTTGTACGT+GGG | - | chr8_4:47827153-47827172 | Msa1329300:five_prime_UTR | 30.0% | |
| AATGCTCGATCTATTTGTAT+TGG | + | chr8_4:47826308-47826327 | None:intergenic | 30.0% | |
| !! | ATTTCTGGTTTGAGTTTCTA+GGG | - | chr8_4:47826325-47826344 | Msa1329300:three_prime_UTR | 30.0% |
| ! | TGAATCGAAATTTGAAATGC+AGG | - | chr8_4:47826501-47826520 | Msa1329300:three_prime_UTR | 30.0% |
| !! | TGAAAGAATTTTGTTGTGCT+AGG | - | chr8_4:47826936-47826955 | Msa1329300:CDS | 30.0% |
| TATTCGACCATATGATTGTT+TGG | - | chr8_4:47826979-47826998 | Msa1329300:intron | 30.0% | |
| CAAATAATTTGACCTTTGCT+GGG | - | chr8_4:47827064-47827083 | Msa1329300:intron | 30.0% | |
| TTTATGCACAATTTGTACGT+GGG | - | chr8_4:47827153-47827172 | Msa1329300:five_prime_UTR | 30.0% | |
| ! | TCGATCTATTTGTATTGGCA+GGG | + | chr8_4:47826303-47826322 | None:intergenic | 35.0% |
| ACAAATAGATCGAGCATTTC+TGG | - | chr8_4:47826310-47826329 | Msa1329300:three_prime_UTR | 35.0% | |
| !! | CATTTCTGGTTTGAGTTTCT+AGG | - | chr8_4:47826324-47826343 | Msa1329300:three_prime_UTR | 35.0% |
| TGACAAATTCGTCTTCACAA+TGG | - | chr8_4:47826400-47826419 | Msa1329300:three_prime_UTR | 35.0% | |
| GACAAATTCGTCTTCACAAT+GGG | - | chr8_4:47826401-47826420 | Msa1329300:three_prime_UTR | 35.0% | |
| ! | TGTCTTGCTTTGCAACTTTT+GGG | + | chr8_4:47826575-47826594 | None:intergenic | 35.0% |
| ! | TTGTCTTGCTTTGCAACTTT+TGG | + | chr8_4:47826576-47826595 | None:intergenic | 35.0% |
| AAGAATGATAAAGTTACCGG+CGG | + | chr8_4:47826658-47826677 | None:intergenic | 35.0% | |
| ATTATTGCAGTTGTGGGATT+CGG | - | chr8_4:47826781-47826800 | Msa1329300:intron | 35.0% | |
| !! | CTTCACTTTTCAGATGAGTT+GGG | + | chr8_4:47826820-47826839 | None:intergenic | 35.0% |
| !! | TCTTCACTTTTCAGATGAGT+TGG | + | chr8_4:47826821-47826840 | None:intergenic | 35.0% |
| AAAGTGAAGATGATGCTTAG+TGG | - | chr8_4:47826831-47826850 | Msa1329300:intron | 35.0% | |
| !! | AATTACAAAATGGGTTGGTG+TGG | - | chr8_4:47827007-47827026 | Msa1329300:intron | 35.0% |
| GCAAATAATTTGACCTTTGC+TGG | - | chr8_4:47827063-47827082 | Msa1329300:intron | 35.0% | |
| ! | ACAACAAATTTTCCCAGCAA+AGG | + | chr8_4:47827079-47827098 | None:intergenic | 35.0% |
| GTTTATGCACAATTTGTACG+TGG | - | chr8_4:47827152-47827171 | Msa1329300:five_prime_UTR | 35.0% | |
| ! | TCGATCTATTTGTATTGGCA+GGG | + | chr8_4:47826303-47826322 | None:intergenic | 35.0% |
| ACAAATAGATCGAGCATTTC+TGG | - | chr8_4:47826310-47826329 | Msa1329300:three_prime_UTR | 35.0% | |
| !! | CATTTCTGGTTTGAGTTTCT+AGG | - | chr8_4:47826324-47826343 | Msa1329300:three_prime_UTR | 35.0% |
| TGACAAATTCGTCTTCACAA+TGG | - | chr8_4:47826400-47826419 | Msa1329300:three_prime_UTR | 35.0% | |
| GACAAATTCGTCTTCACAAT+GGG | - | chr8_4:47826401-47826420 | Msa1329300:three_prime_UTR | 35.0% | |
| ! | TGTCTTGCTTTGCAACTTTT+GGG | + | chr8_4:47826575-47826594 | None:intergenic | 35.0% |
| ! | TTGTCTTGCTTTGCAACTTT+TGG | + | chr8_4:47826576-47826595 | None:intergenic | 35.0% |
| AAGAATGATAAAGTTACCGG+CGG | + | chr8_4:47826658-47826677 | None:intergenic | 35.0% | |
| ATTATTGCAGTTGTGGGATT+CGG | - | chr8_4:47826781-47826800 | Msa1329300:intron | 35.0% | |
| !! | CTTCACTTTTCAGATGAGTT+GGG | + | chr8_4:47826820-47826839 | None:intergenic | 35.0% |
| !! | TCTTCACTTTTCAGATGAGT+TGG | + | chr8_4:47826821-47826840 | None:intergenic | 35.0% |
| AAAGTGAAGATGATGCTTAG+TGG | - | chr8_4:47826831-47826850 | Msa1329300:intron | 35.0% | |
| !! | AATTACAAAATGGGTTGGTG+TGG | - | chr8_4:47827007-47827026 | Msa1329300:intron | 35.0% |
| GCAAATAATTTGACCTTTGC+TGG | - | chr8_4:47827063-47827082 | Msa1329300:intron | 35.0% | |
| ! | ACAACAAATTTTCCCAGCAA+AGG | + | chr8_4:47827079-47827098 | None:intergenic | 35.0% |
| GTTTATGCACAATTTGTACG+TGG | - | chr8_4:47827152-47827171 | Msa1329300:five_prime_UTR | 35.0% | |
| ! | TTTGTATTGGCAGGGGTTAA+AGG | + | chr8_4:47826295-47826314 | None:intergenic | 40.0% |
| ! | CGATCTATTTGTATTGGCAG+GGG | + | chr8_4:47826302-47826321 | None:intergenic | 40.0% |
| ! | CTCGATCTATTTGTATTGGC+AGG | + | chr8_4:47826304-47826323 | None:intergenic | 40.0% |
| TGAAATGCAGGTAAAGTGCA+TGG | - | chr8_4:47826513-47826532 | Msa1329300:three_prime_UTR | 40.0% | |
| ! | GTCTTGCTTTGCAACTTTTG+GGG | + | chr8_4:47826574-47826593 | None:intergenic | 40.0% |
| ! | TTTGTATTGGCAGGGGTTAA+AGG | + | chr8_4:47826295-47826314 | None:intergenic | 40.0% |
| ! | CGATCTATTTGTATTGGCAG+GGG | + | chr8_4:47826302-47826321 | None:intergenic | 40.0% |
| ! | CTCGATCTATTTGTATTGGC+AGG | + | chr8_4:47826304-47826323 | None:intergenic | 40.0% |
| TGAAATGCAGGTAAAGTGCA+TGG | - | chr8_4:47826513-47826532 | Msa1329300:three_prime_UTR | 40.0% | |
| ! | GTCTTGCTTTGCAACTTTTG+GGG | + | chr8_4:47826574-47826593 | None:intergenic | 40.0% |
| ! | AACTTTTCCAGCACGAGCAA+GGG | + | chr8_4:47826541-47826560 | None:intergenic | 45.0% |
| ! | TAACTTTTCCAGCACGAGCA+AGG | + | chr8_4:47826542-47826561 | None:intergenic | 45.0% |
| TTGCTCGTGCTGGAAAAGTT+AGG | - | chr8_4:47826541-47826560 | Msa1329300:three_prime_UTR | 45.0% | |
| TGCTCGTGCTGGAAAAGTTA+GGG | - | chr8_4:47826542-47826561 | Msa1329300:three_prime_UTR | 45.0% | |
| ATTGCATACGCTTGTGAGCA+CGG | + | chr8_4:47826617-47826636 | None:intergenic | 45.0% | |
| ! | AACTTTTCCAGCACGAGCAA+GGG | + | chr8_4:47826541-47826560 | None:intergenic | 45.0% |
| ! | TAACTTTTCCAGCACGAGCA+AGG | + | chr8_4:47826542-47826561 | None:intergenic | 45.0% |
| TTGCTCGTGCTGGAAAAGTT+AGG | - | chr8_4:47826541-47826560 | Msa1329300:three_prime_UTR | 45.0% | |
| TGCTCGTGCTGGAAAAGTTA+GGG | - | chr8_4:47826542-47826561 | Msa1329300:three_prime_UTR | 45.0% | |
| ATTGCATACGCTTGTGAGCA+CGG | + | chr8_4:47826617-47826636 | None:intergenic | 45.0% | |
| GCTCGTGCTGGAAAAGTTAG+GGG | - | chr8_4:47826543-47826562 | Msa1329300:three_prime_UTR | 50.0% | |
| GCTCGTGCTGGAAAAGTTAG+GGG | - | chr8_4:47826543-47826562 | Msa1329300:three_prime_UTR | 50.0% | |
| CGATTTGCAGCAGCAGCTCT+CGG | + | chr8_4:47826357-47826376 | None:intergenic | 55.0% | |
| GACAAGAAGAAGCAGCCACG+AGG | - | chr8_4:47826591-47826610 | Msa1329300:three_prime_UTR | 55.0% | |
| AGTTACCGGCGGTGACGAAA+CGG | + | chr8_4:47826647-47826666 | None:intergenic | 55.0% | |
| GTGGGATTCGGAAAGAAGCG+TGG | - | chr8_4:47826793-47826812 | Msa1329300:intron | 55.0% | |
| CGATTTGCAGCAGCAGCTCT+CGG | + | chr8_4:47826357-47826376 | None:intergenic | 55.0% | |
| GACAAGAAGAAGCAGCCACG+AGG | - | chr8_4:47826591-47826610 | Msa1329300:three_prime_UTR | 55.0% | |
| AGTTACCGGCGGTGACGAAA+CGG | + | chr8_4:47826647-47826666 | None:intergenic | 55.0% | |
| GTGGGATTCGGAAAGAAGCG+TGG | - | chr8_4:47826793-47826812 | Msa1329300:intron | 55.0% | |
| CATGGTTCCCTTGCTCGTGC+TGG | - | chr8_4:47826531-47826550 | Msa1329300:three_prime_UTR | 60.0% | |
| AATCGCCGTTTCGTCACCGC+CGG | - | chr8_4:47826639-47826658 | Msa1329300:exon | 60.0% | |
| CATGGTTCCCTTGCTCGTGC+TGG | - | chr8_4:47826531-47826550 | Msa1329300:three_prime_UTR | 60.0% | |
| AATCGCCGTTTCGTCACCGC+CGG | - | chr8_4:47826639-47826658 | Msa1329300:exon | 60.0% | |
| CGCTTGTGAGCACGGCCTCG+TGG | + | chr8_4:47826609-47826628 | None:intergenic | 70.0% | |
| CGCTTGTGAGCACGGCCTCG+TGG | + | chr8_4:47826609-47826628 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 47826289 | 47827203 | 47826289 | ID=Msa1329300;Name=Msa1329300 |
| chr8_4 | mRNA | 47826289 | 47827203 | 47826289 | ID=Msa1329300-mRNA-1;Parent=Msa1329300;Name=Msa1329300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=130|1|1|1|1|1|3|366|62 |
| chr8_4 | exon | 47826289 | 47826701 | 47826289 | ID=Msa1329300-mRNA-1:exon:13702;Parent=Msa1329300-mRNA-1 |
| chr8_4 | exon | 47826832 | 47826969 | 47826832 | ID=Msa1329300-mRNA-1:exon:13701;Parent=Msa1329300-mRNA-1 |
| chr8_4 | exon | 47827070 | 47827203 | 47827070 | ID=Msa1329300-mRNA-1:exon:13700;Parent=Msa1329300-mRNA-1 |
| chr8_4 | five_prime_UTR | 47827074 | 47827203 | 47827074 | ID=Msa1329300-mRNA-1:five_prime_utr;Parent=Msa1329300-mRNA-1 |
| chr8_4 | CDS | 47827070 | 47827073 | 47827070 | ID=Msa1329300-mRNA-1:cds;Parent=Msa1329300-mRNA-1 |
| chr8_4 | CDS | 47826832 | 47826969 | 47826832 | ID=Msa1329300-mRNA-1:cds;Parent=Msa1329300-mRNA-1 |
| chr8_4 | CDS | 47826655 | 47826701 | 47826655 | ID=Msa1329300-mRNA-1:cds;Parent=Msa1329300-mRNA-1 |
| chr8_4 | three_prime_UTR | 47826289 | 47826654 | 47826289 | ID=Msa1329300-mRNA-1:three_prime_utr;Parent=Msa1329300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
