AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0484290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484290 MtrunA17_Chr5g0396621 97.602 417 10 0 1 417 1 417 0.0 842
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484290 AT4G23860.1 52.339 449 176 8 4 416 5 451 1.08e-160 460
Msa0484290 AT4G23860.3 52.339 449 176 8 4 416 5 451 1.08e-160 460
Msa0484290 AT4G23860.2 52.339 449 176 8 4 416 5 451 1.08e-160 460
Msa0484290 AT4G23860.4 51.733 404 158 7 49 416 1 403 6.34e-142 411

Find 119 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTACAATCACAACTTTAA+AGG 0.150581 3_4:-1618292 Msa0484290:CDS
GAAAATTTGAAATCGGAATT+TGG 0.165961 3_4:-1620741 Msa0484290:five_prime_UTR
TAGCAAGGACAAAGGTATTT+TGG 0.200140 3_4:-1617109 Msa0484290:CDS
CAGCTGTCTTGGTGGTTTAA+AGG 0.201334 3_4:-1616298 Msa0484290:three_prime_UTR
TTTCATGTACCCTTTGTTAT+AGG 0.222177 3_4:+1619017 None:intergenic
ATTGCTTTACCATGTATAAC+TGG 0.249548 3_4:+1616871 None:intergenic
GCAGGAAGCTGATTTAGTTT+TGG 0.274670 3_4:-1619064 Msa0484290:intron
TTGAGTTTATTTGTCATATC+TGG 0.298024 3_4:-1616250 Msa0484290:three_prime_UTR
AACTCAACAGTTTGCAAGTT+AGG 0.303184 3_4:+1616266 None:intergenic
CGGAATTTGGTAAGTAGAAA+TGG 0.312054 3_4:-1620728 Msa0484290:exon
TCTATTTGTTCTTCAGCATC+TGG 0.320887 3_4:+1618235 None:intergenic
GGTTCTGAATCTATATCTAA+TGG 0.329862 3_4:-1616997 Msa0484290:CDS
ATGCAAATGCAAGAATTGTT+TGG 0.337918 3_4:-1616818 Msa0484290:CDS
TGGCTCACCTTCTTCATCTC+TGG 0.340141 3_4:+1617242 None:intergenic
TGGATATCAGCAGCAGAAAT+TGG 0.340176 3_4:+1616371 None:intergenic
ATTATATCCTGAGGTAATAT+TGG 0.347692 3_4:-1617166 Msa0484290:CDS
GGATGGGCTTCGCACTTTCC+TGG 0.355488 3_4:-1616608 Msa0484290:intron
GTTCTGAATCTATATCTAAT+GGG 0.367938 3_4:-1616996 Msa0484290:CDS
ACATTCTCAATATCTTTACT+TGG 0.382845 3_4:+1618322 None:intergenic
AGAAGAAAAGTTACAGCAAC+AGG 0.389439 3_4:-1616710 Msa0484290:CDS
CCCGTTCCTCAACTTCTTCA+AGG 0.394586 3_4:+1620653 None:intergenic
TGCTCGTTGTCTTGCCATGA+TGG 0.396475 3_4:-1618931 Msa0484290:CDS
GAGAGGGTTTGGAATAATAA+TGG 0.402686 3_4:+1621078 None:intergenic
TTGCATGTTAATTGTCTCCT+TGG 0.411300 3_4:-1616916 Msa0484290:CDS
TCAGCATCTGGATCTGGATA+AGG 0.420206 3_4:+1618247 None:intergenic
TTACGAGGATTTCATGTGTA+AGG 0.420876 3_4:-1617217 Msa0484290:CDS
TGTTCTTCAGCATCTGGATC+TGG 0.423504 3_4:+1618241 None:intergenic
AAGAATAAGCGGCGCCGTGT+AGG 0.430018 3_4:-1616329 Msa0484290:CDS
CAAACTCCAGCATTCCCATC+AGG 0.444490 3_4:+1618961 None:intergenic
CAGTAACGGAAGAGAGGGTT+TGG 0.450444 3_4:+1621067 None:intergenic
GAATCGTGAAAATTTGAAAT+CGG 0.450486 3_4:-1620748 Msa0484290:five_prime_UTR
GGCTCACCTTCTTCATCTCT+GGG 0.456037 3_4:+1617243 None:intergenic
TGCATCACCTGCACCCCTGA+TGG 0.462688 3_4:-1618976 Msa0484290:CDS
TGCACCCCTGATGGGAATGC+TGG 0.466841 3_4:-1618967 Msa0484290:CDS
ATAACAAAGGGTACATGAAA+AGG 0.466894 3_4:-1619014 Msa0484290:CDS
GAGACAATTAACATGCAAAC+TGG 0.468386 3_4:+1616921 None:intergenic
CCTTGAAGAAGTTGAGGAAC+GGG 0.470276 3_4:-1620653 Msa0484290:CDS
CAGCATCTGGATCTGGATAA+GGG 0.471368 3_4:+1618248 None:intergenic
TCGTGCAGATTGTGGAACTA+TGG 0.474862 3_4:-1618411 Msa0484290:intron
GTGAGTTTCAGCTGTCTTGG+TGG 0.474877 3_4:-1616306 Msa0484290:exon
AGGGTGAGTTTCAGCTGTCT+TGG 0.482990 3_4:-1616309 Msa0484290:exon
AGCATTCCCATCAGGGGTGC+AGG 0.484487 3_4:+1618969 None:intergenic
CATGATTAAGCCATTCTCTC+AGG 0.484584 3_4:-1621024 Msa0484290:intron
GTCTTGCCATGATGGTCATC+AGG 0.485015 3_4:-1618923 Msa0484290:intron
AAGACATGCCTTCAACTTGT+GGG 0.485778 3_4:-1617086 Msa0484290:CDS
TGTACTTCGTCTCTTTAAGT+TGG 0.490961 3_4:-1616162 Msa0484290:three_prime_UTR
GAAGACATGCCTTCAACTTG+TGG 0.495558 3_4:-1617087 Msa0484290:CDS
CTGAGAGAATGGCTTAATCA+TGG 0.501101 3_4:+1621025 None:intergenic
AATGGGGCAGGTCTTCCTCC+TGG 0.501327 3_4:-1616979 Msa0484290:CDS
TGGTTTCATGAAGAGCATCT+TGG 0.504300 3_4:-1618184 Msa0484290:CDS
TTGTGGGTCTGAAAAGCCAC+TGG 0.506874 3_4:-1617070 Msa0484290:CDS
CATTCTCAATATCTTTACTT+GGG 0.507015 3_4:+1618323 None:intergenic
GCATCACCTGCACCCCTGAT+GGG 0.510806 3_4:-1618975 Msa0484290:CDS
AGAATAAGCGGCGCCGTGTA+GGG 0.511530 3_4:-1616328 Msa0484290:CDS
CACATGAAATCCTCGTAAAG+TGG 0.514939 3_4:+1617222 None:intergenic
AAGGTACTCGCCGAGCGTAA+CGG 0.517432 3_4:+1620672 None:intergenic
AGAAGTTGAGGAACGGGAGC+TGG 0.520781 3_4:-1620647 Msa0484290:intron
GGCATTGAAGATATGAAGGA+TGG 0.528151 3_4:-1616625 Msa0484290:CDS
TTGGTGGTTTAAAGGCTCGT+TGG 0.528655 3_4:-1616290 Msa0484290:three_prime_UTR
ATCAGCAGCAGAAATTGGCT+TGG 0.531075 3_4:+1616376 None:intergenic
ACCTTGAAGAAGTTGAGGAA+CGG 0.536931 3_4:-1620654 Msa0484290:CDS
ATCAAATTTATAAAATGTCT+AGG 0.537298 3_4:-1616068 Msa0484290:three_prime_UTR
TGATGCGTTACCTGAGAGAA+TGG 0.540448 3_4:+1621014 None:intergenic
GAAGGGCATTGAAGATATGA+AGG 0.540908 3_4:-1616629 Msa0484290:CDS
AGGGAGTGTACCTATAACAA+AGG 0.543143 3_4:-1619027 Msa0484290:CDS
GAATCTATATCTAATGGGGC+AGG 0.543789 3_4:-1616991 Msa0484290:CDS
ATCTGGATAAGGGCGCGCAC+AGG 0.547407 3_4:+1618258 None:intergenic
CGAATCTAGTCTAGCAGTAA+CGG 0.548044 3_4:+1621053 None:intergenic
TTGCTTTACCATGTATAACT+GGG 0.548495 3_4:+1616872 None:intergenic
GCTGCTTCCCCAGTTATACA+TGG 0.550134 3_4:-1616880 Msa0484290:CDS
AGTGTTGTTTGTGTGAGGAC+TGG 0.550628 3_4:-1618204 Msa0484290:CDS
CCAGCCACCAATATTACCTC+AGG 0.554523 3_4:+1617159 None:intergenic
TGGAATATTATCATCAGAAG+CGG 0.559901 3_4:-1616798 Msa0484290:CDS
TCTAGCAGTAACGGAAGAGA+GGG 0.564329 3_4:+1621062 None:intergenic
CTTTCTGAAATTATATCCTG+AGG 0.564699 3_4:-1617175 Msa0484290:CDS
TTGATGACATTAAGAATAAG+CGG 0.567176 3_4:-1616340 Msa0484290:CDS
ATATCCTGAGGTAATATTGG+TGG 0.568743 3_4:-1617163 Msa0484290:CDS
TGCTACTGCTCAAGTTAGCA+AGG 0.571725 3_4:-1617124 Msa0484290:CDS
TGGTCTCGAGTCTTCTGATG+AGG 0.583971 3_4:-1618164 Msa0484290:intron
CAGATTCCCAGAGATGAAGA+AGG 0.584443 3_4:-1617249 Msa0484290:CDS
GTCTAGCAGTAACGGAAGAG+AGG 0.584488 3_4:+1621061 None:intergenic
CCTGAGGTAATATTGGTGGC+TGG 0.585409 3_4:-1617159 Msa0484290:CDS
GGGAGTGTACCTATAACAAA+GGG 0.588151 3_4:-1619026 Msa0484290:CDS
AGAGAAAGTCGAGATCTTGA+AGG 0.592258 3_4:-1616647 Msa0484290:CDS
GGTGGGCCATCCGTTACGCT+CGG 0.596901 3_4:-1620682 Msa0484290:CDS
GTAATATTGAGAAGTCATCA+AGG 0.599401 3_4:+1616126 None:intergenic
TCTGCGTTTGATGATGAAGA+AGG 0.601495 3_4:-1620703 Msa0484290:CDS
GAAACTTCAGATGTGACTGT+GGG 0.602201 3_4:-1618381 Msa0484290:CDS
GATGTGGCACAAGCTTCTGT+TGG 0.604749 3_4:-1617018 Msa0484290:CDS
AAACTCCAGCATTCCCATCA+GGG 0.605816 3_4:+1618962 None:intergenic
GGGGCAGGTCTTCCTCCTGG+TGG 0.605909 3_4:-1616976 Msa0484290:CDS
CAAAGGGTACATGAAAAGGC+AGG 0.607761 3_4:-1619010 Msa0484290:CDS
TACTCGCCGAGCGTAACGGA+TGG 0.608509 3_4:+1620676 None:intergenic
AGAAATTGGCTTGGACGAGT+CGG 0.609474 3_4:+1616385 None:intergenic
TGACAAGGAGGACTCAATTG+TGG 0.614397 3_4:-1616761 Msa0484290:CDS
AGAAACTTCAGATGTGACTG+TGG 0.617440 3_4:-1618382 Msa0484290:CDS
GAACTACCTGATGACCATCA+TGG 0.620280 3_4:+1618917 None:intergenic
GCATTGAAGATATGAAGGAT+GGG 0.621117 3_4:-1616624 Msa0484290:CDS
AGAAGGTGAGCCACTTTACG+AGG 0.621339 3_4:-1617232 Msa0484290:CDS
AATAGCAGTATATGCACTGA+AGG 0.622459 3_4:-1616946 Msa0484290:CDS
GAGAAAGTCGAGATCTTGAA+GGG 0.622811 3_4:-1616646 Msa0484290:CDS
TAATATTGAGAAGTCATCAA+GGG 0.628117 3_4:+1616127 None:intergenic
CAGCTGAAACTCACCCTACA+CGG 0.632310 3_4:+1616315 None:intergenic
GCGTTTGATGATGAAGAAGG+TGG 0.634475 3_4:-1620700 Msa0484290:CDS
CTGCTATTACAACTTCCACC+AGG 0.635252 3_4:+1616961 None:intergenic
TAATTCTCCTAAAATTGATG+TGG 0.635838 3_4:-1617034 Msa0484290:CDS
AACTCCAGCATTCCCATCAG+GGG 0.637076 3_4:+1618963 None:intergenic
TTCTGAATCTATATCTAATG+GGG 0.641231 3_4:-1616995 Msa0484290:CDS
AGAAAAGTTACAGCAACAGG+AGG 0.643443 3_4:-1616707 Msa0484290:CDS
GAAAAGTTACAGCAACAGGA+GGG 0.644096 3_4:-1616706 Msa0484290:CDS
TGCTTTACCATGTATAACTG+GGG 0.644679 3_4:+1616873 None:intergenic
CGAGTACCTTGAAGAAGTTG+AGG 0.654992 3_4:-1620659 Msa0484290:CDS
GCTCAAGTTAGCAAGGACAA+AGG 0.672437 3_4:-1617117 Msa0484290:CDS
TGTGGGTCTGAAAAGCCACT+GGG 0.672800 3_4:-1617069 Msa0484290:CDS
GATACAGTGTTGTTTGTGTG+AGG 0.674890 3_4:-1618209 Msa0484290:CDS
CGTTTGATGATGAAGAAGGT+GGG 0.682869 3_4:-1620699 Msa0484290:CDS
CTATTACAACTTCCACCAGG+AGG 0.711655 3_4:+1616964 None:intergenic
CAGCAACAATGTTCACACCA+AGG 0.714622 3_4:+1616899 None:intergenic
TTATATGAAGTATCACCCAG+TGG 0.760410 3_4:+1617054 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAAATAAATAGATAA+AGG + chr3_4:1616223-1616242 None:intergenic 10.0%
!!! CAAATTTTAAAATTTTTACA+CGG + chr3_4:1617408-1617427 None:intergenic 10.0%
!!! TTTTTAATTTGAAGAAAAAA+TGG - chr3_4:1617438-1617457 Msa0484290:intron 10.0%
!! ATAAAATATATGATTTAACT+GGG + chr3_4:1618339-1618358 None:intergenic 10.0%
!! AATAAAATATATGATTTAAC+TGG + chr3_4:1618340-1618359 None:intergenic 10.0%
!! TAGTTTAACTAATTAATTAT+TGG - chr3_4:1619579-1619598 Msa0484290:intron 10.0%
!!! AATAAATAAGGGTATAATAA+TGG - chr3_4:1616929-1616948 Msa0484290:CDS 15.0%
!!! TATTTTGAGAAAAAGAAAAA+TGG - chr3_4:1616994-1617013 Msa0484290:CDS 15.0%
!!! ATTTTGAGAAAAAGAAAAAT+GGG - chr3_4:1616995-1617014 Msa0484290:CDS 15.0%
!!! TTCTTTTTCTCTAAATTAAT+GGG + chr3_4:1617624-1617643 None:intergenic 15.0%
!!! TTTCTTTTTCTCTAAATTAA+TGG + chr3_4:1617625-1617644 None:intergenic 15.0%
!! ATTGAATAAAAAAAGGAAAA+AGG + chr3_4:1618056-1618075 None:intergenic 15.0%
!! TAAAATATATGATTTAACTG+GGG + chr3_4:1618338-1618357 None:intergenic 15.0%
!!! AATCATATATTTTATTTGTG+AGG - chr3_4:1618344-1618363 Msa0484290:CDS 15.0%
!!! ATAATCAGGTAATAATATTT+TGG + chr3_4:1618640-1618659 None:intergenic 15.0%
!!! AATGCAATGTTTTTTATTTT+CGG + chr3_4:1619095-1619114 None:intergenic 15.0%
!! AACATAGATTAGATTAAATT+TGG - chr3_4:1619350-1619369 Msa0484290:intron 15.0%
!!! TAGTTTTAAAACAAATGTTT+GGG + chr3_4:1619561-1619580 None:intergenic 15.0%
!! AATTAATTATTGGTACAAAA+CGG - chr3_4:1619589-1619608 Msa0484290:intron 15.0%
!! ATCAAATTTATAAAATGTCT+AGG - chr3_4:1621074-1621093 Msa0484290:five_prime_UTR 15.0%
!!! GTAATTTGCTTAACAATATT+TGG - chr3_4:1616648-1616667 Msa0484290:CDS 20.0%
!!! AATATTTGGCTATTACTTTT+TGG - chr3_4:1616662-1616681 Msa0484290:CDS 20.0%
!!! ATTAATTGTGTTGATTTTGA+TGG - chr3_4:1616834-1616853 Msa0484290:CDS 20.0%
!! TGGATGAAATTCAATAAATA+AGG - chr3_4:1616917-1616936 Msa0484290:CDS 20.0%
!! GGATGAAATTCAATAAATAA+GGG - chr3_4:1616918-1616937 Msa0484290:CDS 20.0%
!! AAAAATAATAAATGCTGCAT+TGG - chr3_4:1616954-1616973 Msa0484290:CDS 20.0%
!!! TTTTAAAATTTTTACACGGA+AGG + chr3_4:1617404-1617423 None:intergenic 20.0%
!! CAAATATATAAACTTCATAC+TGG + chr3_4:1617469-1617488 None:intergenic 20.0%
!! TAGAGAAAAAGAAAATTGAA+CGG - chr3_4:1617631-1617650 Msa0484290:intron 20.0%
!! TGATGTTAAAGATAAAGAAT+AGG - chr3_4:1617659-1617678 Msa0484290:intron 20.0%
!!! GGTTATTTCTTTATAAAAAG+TGG - chr3_4:1618407-1618426 Msa0484290:intron 20.0%
!! TAGCAATATATTGATATCTA+AGG + chr3_4:1618709-1618728 None:intergenic 20.0%
!! TAAAATAGATTAGAGAAGAT+TGG + chr3_4:1619027-1619046 None:intergenic 20.0%
!! GAACTAAAAAATTGTATATG+AGG + chr3_4:1619414-1619433 None:intergenic 20.0%
!!! CTAGTTTTAAAACAAATGTT+TGG + chr3_4:1619562-1619581 None:intergenic 20.0%
!! AAATGACAATTGAAGATTAT+GGG + chr3_4:1619640-1619659 None:intergenic 20.0%
!!! CTAAGTCTTTTTAATAAACT+TGG - chr3_4:1620466-1620485 Msa0484290:intron 20.0%
!! TAAAAAAGTTCATACAAGTT+GGG + chr3_4:1620948-1620967 None:intergenic 20.0%
!! TCAATATTTTCGTTGAATCT+AGG - chr3_4:1616246-1616265 Msa0484290:three_prime_UTR 25.0%
!! CAATATTTTCGTTGAATCTA+GGG - chr3_4:1616247-1616266 Msa0484290:three_prime_UTR 25.0%
!! AATGTGTTGTGTTGTATTTT+AGG - chr3_4:1616368-1616387 Msa0484290:CDS 25.0%
!! GAATCGTGAAAATTTGAAAT+CGG - chr3_4:1616394-1616413 Msa0484290:CDS 25.0%
!! GAAAATTTGAAATCGGAATT+TGG - chr3_4:1616401-1616420 Msa0484290:intron 25.0%
! CTCAGATTATACACTAATAA+AGG + chr3_4:1616580-1616599 None:intergenic 25.0%
! ATTGTTAAGCAAATTACAAC+TGG + chr3_4:1616645-1616664 None:intergenic 25.0%
!!! AAACGACTATTTTTTAGAGA+CGG + chr3_4:1616785-1616804 None:intergenic 25.0%
!! CTCTAAAAAATAGTCGTTTA+AGG - chr3_4:1616786-1616805 Msa0484290:CDS 25.0%
! CCACTAACTACAATTAATAA+GGG + chr3_4:1616886-1616905 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG + chr3_4:1616887-1616906 None:intergenic 25.0%
! AAGAGACAATTATTATGAGA+CGG - chr3_4:1617020-1617039 Msa0484290:CDS 25.0%
!!! TGTATCGATTTAAATGAGTT+AGG + chr3_4:1617343-1617362 None:intergenic 25.0%
! TTTATTACGTTACTGTTGAA+TGG - chr3_4:1617758-1617777 Msa0484290:intron 25.0%
! TGTTGCAATTGAAAAGATAT+AGG + chr3_4:1617795-1617814 None:intergenic 25.0%
! GTAATAATTGAAGACTATAC+AGG + chr3_4:1617868-1617887 None:intergenic 25.0%
! CCTGCAAATTGAATAAAAAA+AGG + chr3_4:1618063-1618082 None:intergenic 25.0%
!!! CCTTTTTTTATTCAATTTGC+AGG - chr3_4:1618060-1618079 Msa0484290:intron 25.0%
!!! GTCACTTTTTAACTATTAAC+TGG - chr3_4:1618444-1618463 Msa0484290:intron 25.0%
! TAACATGTCGAATAAAATCA+GGG + chr3_4:1618570-1618589 None:intergenic 25.0%
! ATAACATGTCGAATAAAATC+AGG + chr3_4:1618571-1618590 None:intergenic 25.0%
! CATTCTCAATATCTTTACTT+GGG + chr3_4:1618822-1618841 None:intergenic 25.0%
! ACATTCTCAATATCTTTACT+TGG + chr3_4:1618823-1618842 None:intergenic 25.0%
! ACAGTATATTAAACACAATC+TGG + chr3_4:1619130-1619149 None:intergenic 25.0%
! CTAAAAAATTGTATATGAGG+AGG + chr3_4:1619411-1619430 None:intergenic 25.0%
! ATACAAAATCCCCATAATTT+GGG + chr3_4:1619438-1619457 None:intergenic 25.0%
! AATACAAAATCCCCATAATT+TGG + chr3_4:1619439-1619458 None:intergenic 25.0%
! AATGACAATTGAAGATTATG+GGG + chr3_4:1619639-1619658 None:intergenic 25.0%
! GAAATGACAATTGAAGATTA+TGG + chr3_4:1619641-1619660 None:intergenic 25.0%
!! AAACAAACAACCATCATTTT+TGG + chr3_4:1619683-1619702 None:intergenic 25.0%
! ATCTATTACAGATACATGAT+TGG + chr3_4:1619729-1619748 None:intergenic 25.0%
! ATATACTCAATTTGCATTTC+TGG - chr3_4:1619776-1619795 Msa0484290:intron 25.0%
! AAATCACAATGGCAAAAATA+AGG + chr3_4:1619852-1619871 None:intergenic 25.0%
! ATTATATCCTGAGGTAATAT+TGG - chr3_4:1619976-1619995 Msa0484290:intron 25.0%
! TAATTCTCCTAAAATTGATG+TGG - chr3_4:1620108-1620127 Msa0484290:intron 25.0%
!! GTTCTGAATCTATATCTAAT+GGG - chr3_4:1620146-1620165 Msa0484290:intron 25.0%
! TTCTGAATCTATATCTAATG+GGG - chr3_4:1620147-1620166 Msa0484290:intron 25.0%
! CAAATTAGAGTCATTAAACA+CGG + chr3_4:1620699-1620718 None:intergenic 25.0%
! TAATGTCATCAAAAAACTGA+TGG + chr3_4:1620794-1620813 None:intergenic 25.0%
!! TTGATGACATTAAGAATAAG+CGG - chr3_4:1620802-1620821 Msa0484290:intron 25.0%
! TTGAGTTTATTTGTCATATC+TGG - chr3_4:1620892-1620911 Msa0484290:intron 25.0%
! GTAAAAAAGTTCATACAAGT+TGG + chr3_4:1620949-1620968 None:intergenic 25.0%
!!! CTTGTATGAACTTTTTTACA+TGG - chr3_4:1620950-1620969 Msa0484290:intron 25.0%
! TAATATTGAGAAGTCATCAA+GGG + chr3_4:1621018-1621037 None:intergenic 25.0%
! AGAATTAACTCGTTTTGCAA+AGG + chr3_4:1616302-1616321 None:intergenic 30.0%
AGGTTTATGCACGATTATTA+AGG - chr3_4:1616806-1616825 Msa0484290:CDS 30.0%
CCCTTATTAATTGTAGTTAG+TGG - chr3_4:1616883-1616902 Msa0484290:CDS 30.0%
! TAAATGAGTTAGGTGTTGTA+TGG + chr3_4:1617333-1617352 None:intergenic 30.0%
AATTTGATGTTGTCCTAGAT+TGG - chr3_4:1617371-1617390 Msa0484290:intron 30.0%
!! AATCATTTTTATCGCTGCTA+CGG - chr3_4:1617709-1617728 Msa0484290:intron 30.0%
TATAAGGAACCATTGTAATC+TGG - chr3_4:1618012-1618031 Msa0484290:intron 30.0%
! TTTCATGTACCCTTTGTTAT+AGG + chr3_4:1618128-1618147 None:intergenic 30.0%
! ATAACAAAGGGTACATGAAA+AGG - chr3_4:1618128-1618147 Msa0484290:intron 30.0%
TAACTTTCGATAGTGTATCT+TGG - chr3_4:1618474-1618493 Msa0484290:intron 30.0%
AACTTTCGATAGTGTATCTT+GGG - chr3_4:1618475-1618494 Msa0484290:intron 30.0%
AATCTACAACGGAATACTAT+AGG + chr3_4:1618507-1618526 None:intergenic 30.0%
CATGTCATATATTAAGTGCA+AGG + chr3_4:1618532-1618551 None:intergenic 30.0%
TATTCGACATGTTATTGTGA+TGG - chr3_4:1618576-1618595 Msa0484290:intron 30.0%
ATTCGACATGTTATTGTGAT+GGG - chr3_4:1618577-1618596 Msa0484290:intron 30.0%
ATCAAACTGGGTTTATAATC+AGG + chr3_4:1618654-1618673 None:intergenic 30.0%
!! TAAACCCAGTTTGATTTTGA+TGG - chr3_4:1618659-1618678 Msa0484290:intron 30.0%
TAAGCCATCAAAATCAAACT+GGG + chr3_4:1618666-1618685 None:intergenic 30.0%
ATAAGCCATCAAAATCAAAC+TGG + chr3_4:1618667-1618686 None:intergenic 30.0%
TCGTACAATCACAACTTTAA+AGG - chr3_4:1618850-1618869 Msa0484290:intron 30.0%
TAGTAACTTTCAGAGATTTG+TGG + chr3_4:1619173-1619192 None:intergenic 30.0%
! CAAATCTCTGAAAGTTACTA+AGG - chr3_4:1619173-1619192 Msa0484290:intron 30.0%
AAAGTTACTAAGGCTATGTT+TGG - chr3_4:1619183-1619202 Msa0484290:intron 30.0%
AAGTTACTAAGGCTATGTTT+GGG - chr3_4:1619184-1619203 Msa0484290:intron 30.0%
!!! TTTTTAGTTCCCCCAAATTA+TGG - chr3_4:1619424-1619443 Msa0484290:intron 30.0%
!!! TTTTAGTTCCCCCAAATTAT+GGG - chr3_4:1619425-1619444 Msa0484290:intron 30.0%
TACAAAATCCCCATAATTTG+GGG + chr3_4:1619437-1619456 None:intergenic 30.0%
TGGAAAGAAAATAGAGCTTT+GGG + chr3_4:1619496-1619515 None:intergenic 30.0%
AAAGAGTTCTCCAAAAATGA+TGG - chr3_4:1619670-1619689 Msa0484290:intron 30.0%
ATTGTTATCAAGCTTTGCTA+GGG + chr3_4:1619758-1619777 None:intergenic 30.0%
TATTGTTATCAAGCTTTGCT+AGG + chr3_4:1619759-1619778 None:intergenic 30.0%
!! AATTTGCATTTCTGGTATGA+TGG - chr3_4:1619784-1619803 Msa0484290:intron 30.0%
AGTGATAAATATGTAACAGC+TGG + chr3_4:1619829-1619848 None:intergenic 30.0%
AGGATGATAGAAAATCACAA+TGG + chr3_4:1619863-1619882 None:intergenic 30.0%
!! CTTTCTGAAATTATATCCTG+AGG - chr3_4:1619967-1619986 Msa0484290:intron 30.0%
!! GGTTCTGAATCTATATCTAA+TGG - chr3_4:1620145-1620164 Msa0484290:intron 30.0%
TTGCTTTACCATGTATAACT+GGG + chr3_4:1620273-1620292 None:intergenic 30.0%
ATTGCTTTACCATGTATAAC+TGG + chr3_4:1620274-1620293 None:intergenic 30.0%
CAATGTTCCTTTCCAAAAAT+TGG - chr3_4:1620290-1620309 Msa0484290:intron 30.0%
ATGCAAATGCAAGAATTGTT+TGG - chr3_4:1620324-1620343 Msa0484290:intron 30.0%
TGGAATATTATCATCAGAAG+CGG - chr3_4:1620344-1620363 Msa0484290:intron 30.0%
ATAGATGGATACATTCTTCA+TGG - chr3_4:1620673-1620692 Msa0484290:CDS 30.0%
TATATGTTATGTTTCACGAC+AGG - chr3_4:1620728-1620747 Msa0484290:exon 30.0%
GTAATATTGAGAAGTCATCA+AGG + chr3_4:1621019-1621038 None:intergenic 30.0%
GGACGATTCAAAAAATTAAC+TGG - chr3_4:1621095-1621114 Msa0484290:five_prime_UTR 30.0%
! GAGAGGGTTTGGAATAATAA+TGG + chr3_4:1616067-1616086 None:intergenic 35.0%
TCTCTCAACAATTTCCCTAA+CGG - chr3_4:1616189-1616208 Msa0484290:three_prime_UTR 35.0%
TAAAGGAGAAATCACCGTTA+GGG + chr3_4:1616206-1616225 None:intergenic 35.0%
ATAAAGGAGAAATCACCGTT+AGG + chr3_4:1616207-1616226 None:intergenic 35.0%
CGGAATTTGGTAAGTAGAAA+TGG - chr3_4:1616414-1616433 Msa0484290:intron 35.0%
TAGAACTGTAGCATTACTTG+TGG - chr3_4:1616553-1616572 Msa0484290:intron 35.0%
TAATCTGAGTCTCGTAGATT+CGG - chr3_4:1616591-1616610 Msa0484290:intron 35.0%
AAAAGGGAAACTTAGCTTCT+AGG + chr3_4:1616753-1616772 None:intergenic 35.0%
!!! GACTATTTTTTAGAGACGGA+GGG + chr3_4:1616781-1616800 None:intergenic 35.0%
AGTTAGTGGAGTAGTTAAGT+TGG - chr3_4:1616897-1616916 Msa0484290:CDS 35.0%
AGACAATTATTATGAGACGG+AGG - chr3_4:1617023-1617042 Msa0484290:CDS 35.0%
GACAATTATTATGAGACGGA+GGG - chr3_4:1617024-1617043 Msa0484290:CDS 35.0%
TACAGATAAGTACCATGTGA+TGG - chr3_4:1617147-1617166 Msa0484290:CDS 35.0%
ACAGATAAGTACCATGTGAT+GGG - chr3_4:1617148-1617167 Msa0484290:CDS 35.0%
TATGTTCAAAATGCACTTGC+AGG + chr3_4:1617563-1617582 None:intergenic 35.0%
CAATGGTTCCTTATAAAGCT+AGG + chr3_4:1618007-1618026 None:intergenic 35.0%
AAGTGTATGCCAGATTACAA+TGG + chr3_4:1618024-1618043 None:intergenic 35.0%
!!! CAGGAAGCTGATTTAGTTTT+GGG - chr3_4:1618079-1618098 Msa0484290:intron 35.0%
!!! AGGAAGCTGATTTAGTTTTG+GGG - chr3_4:1618080-1618099 Msa0484290:intron 35.0%
!! TTCCTTTGACTCTAGAACTT+CGG - chr3_4:1618250-1618269 Msa0484290:CDS 35.0%
AGAACTTCGGATTGAATTAC+CGG - chr3_4:1618263-1618282 Msa0484290:CDS 35.0%
AAAAGCAAACACTGATACAC+CGG + chr3_4:1618285-1618304 None:intergenic 35.0%
!! GGCTGTTCTGAAAAGAATTT+AGG - chr3_4:1618386-1618405 Msa0484290:CDS 35.0%
TCTATTTGTTCTTCAGCATC+TGG + chr3_4:1618910-1618929 None:intergenic 35.0%
ATTGTATATGAGGAGGAGTT+TGG + chr3_4:1619404-1619423 None:intergenic 35.0%
! TTTAGTTCCCCCAAATTATG+GGG - chr3_4:1619426-1619445 Msa0484290:intron 35.0%
ACAAAATCCCCATAATTTGG+GGG + chr3_4:1619436-1619455 None:intergenic 35.0%
!! AAGAAAATAGAGCTTTGGGA+GGG + chr3_4:1619492-1619511 None:intergenic 35.0%
!! AAAGAAAATAGAGCTTTGGG+AGG + chr3_4:1619493-1619512 None:intergenic 35.0%
GTGGAAAGAAAATAGAGCTT+TGG + chr3_4:1619497-1619516 None:intergenic 35.0%
!!! AAATGTTTGGGAGTTTTGAG+GGG + chr3_4:1619549-1619568 None:intergenic 35.0%
!! CAAATGTTTGGGAGTTTTGA+GGG + chr3_4:1619550-1619569 None:intergenic 35.0%
! ACAAATGTTTGGGAGTTTTG+AGG + chr3_4:1619551-1619570 None:intergenic 35.0%
!! ACGGTTTTGACCTTTTATTG+TGG - chr3_4:1619608-1619627 Msa0484290:intron 35.0%
! TTTGGAGAACTCTTTTCGAA+GGG + chr3_4:1619665-1619684 None:intergenic 35.0%
!! TTTTGGAGAACTCTTTTCGA+AGG + chr3_4:1619666-1619685 None:intergenic 35.0%
TTACGAGGATTTCATGTGTA+AGG - chr3_4:1619925-1619944 Msa0484290:intron 35.0%
ATATCCTGAGGTAATATTGG+TGG - chr3_4:1619979-1619998 Msa0484290:intron 35.0%
!!! TAGCAAGGACAAAGGTATTT+TGG - chr3_4:1620033-1620052 Msa0484290:intron 35.0%
! TTATATGAAGTATCACCCAG+TGG + chr3_4:1620091-1620110 None:intergenic 35.0%
AATAGCAGTATATGCACTGA+AGG - chr3_4:1620196-1620215 Msa0484290:intron 35.0%
GAGACAATTAACATGCAAAC+TGG + chr3_4:1620224-1620243 None:intergenic 35.0%
TTGCATGTTAATTGTCTCCT+TGG - chr3_4:1620226-1620245 Msa0484290:intron 35.0%
TGCTTTACCATGTATAACTG+GGG + chr3_4:1620272-1620291 None:intergenic 35.0%
!! CATCTCTCCAATTTTTGGAA+AGG + chr3_4:1620300-1620319 None:intergenic 35.0%
!! TAGAGCATCTCTCCAATTTT+TGG + chr3_4:1620305-1620324 None:intergenic 35.0%
!! GATTGCTTTTCTACTTGACA+AGG - chr3_4:1620366-1620385 Msa0484290:intron 35.0%
AGAAGAAAAGTTACAGCAAC+AGG - chr3_4:1620432-1620451 Msa0484290:intron 35.0%
GCATTGAAGATATGAAGGAT+GGG - chr3_4:1620518-1620537 Msa0484290:intron 35.0%
! TTCCTGGTATGTTCTCTTTT+TGG - chr3_4:1620550-1620569 Msa0484290:intron 35.0%
AACTCAACAGTTTGCAAGTT+AGG + chr3_4:1620879-1620898 None:intergenic 35.0%
TGTACTTCGTCTCTTTAAGT+TGG - chr3_4:1620980-1620999 Msa0484290:intron 35.0%
! ACTGCGTTTTGTGAATAGAG+GGG + chr3_4:1616029-1616048 None:intergenic 40.0%
! CACTGCGTTTTGTGAATAGA+GGG + chr3_4:1616030-1616049 None:intergenic 40.0%
! ACACTGCGTTTTGTGAATAG+AGG + chr3_4:1616031-1616050 None:intergenic 40.0%
CGAATCTAGTCTAGCAGTAA+CGG + chr3_4:1616092-1616111 None:intergenic 40.0%
CTGAGAGAATGGCTTAATCA+TGG + chr3_4:1616120-1616139 None:intergenic 40.0%
CATGATTAAGCCATTCTCTC+AGG - chr3_4:1616118-1616137 Msa0484290:three_prime_UTR 40.0%
!! TCTGCGTTTGATGATGAAGA+AGG - chr3_4:1616439-1616458 Msa0484290:intron 40.0%
!! CGTTTGATGATGAAGAAGGT+GGG - chr3_4:1616443-1616462 Msa0484290:intron 40.0%
ACCTTGAAGAAGTTGAGGAA+CGG - chr3_4:1616488-1616507 Msa0484290:intron 40.0%
! GTCTCGTAGATTCGGTAAAT+TGG - chr3_4:1616599-1616618 Msa0484290:intron 40.0%
ACAACTGGTCAATTGAAGCT+CGG + chr3_4:1616630-1616649 None:intergenic 40.0%
!!! CGACTATTTTTTAGAGACGG+AGG + chr3_4:1616782-1616801 None:intergenic 40.0%
!! AGCTCAAAGGAGTATTCTCT+GGG + chr3_4:1617109-1617128 None:intergenic 40.0%
GTAAAGATCCCTTGGTGAAA+TGG + chr3_4:1617227-1617246 None:intergenic 40.0%
! GGAAGGTATGAAACCAATCT+AGG + chr3_4:1617387-1617406 None:intergenic 40.0%
GAAACACACACATAACAGAG+TGG + chr3_4:1617507-1617526 None:intergenic 40.0%
!! GTCGAGATCCTAGCTTTATA+AGG - chr3_4:1617996-1618015 Msa0484290:intron 40.0%
!! GCAGGAAGCTGATTTAGTTT+TGG - chr3_4:1618078-1618097 Msa0484290:intron 40.0%
!!! GGAAGCTGATTTAGTTTTGG+GGG - chr3_4:1618081-1618100 Msa0484290:intron 40.0%
!!! GAAGCTGATTTAGTTTTGGG+GGG - chr3_4:1618082-1618101 Msa0484290:intron 40.0%
! AGGGAGTGTACCTATAACAA+AGG - chr3_4:1618115-1618134 Msa0484290:intron 40.0%
! GGGAGTGTACCTATAACAAA+GGG - chr3_4:1618116-1618135 Msa0484290:intron 40.0%
!! ATCCGAAGTTCTAGAGTCAA+AGG + chr3_4:1618255-1618274 None:intergenic 40.0%
AGTGCAAGGCAAATCTACAA+CGG + chr3_4:1618518-1618537 None:intergenic 40.0%
TATGACATGTAATCTGTGCC+TGG - chr3_4:1618543-1618562 Msa0484290:intron 40.0%
AGAAACTTCAGATGTGACTG+TGG - chr3_4:1618760-1618779 Msa0484290:intron 40.0%
GAAACTTCAGATGTGACTGT+GGG - chr3_4:1618761-1618780 Msa0484290:intron 40.0%
!! GATACAGTGTTGTTTGTGTG+AGG - chr3_4:1618933-1618952 Msa0484290:CDS 40.0%
!! TGGTTTCATGAAGAGCATCT+TGG - chr3_4:1618958-1618977 Msa0484290:CDS 40.0%
TAAGGCTATGTTTGGGAGTT+TGG - chr3_4:1619191-1619210 Msa0484290:intron 40.0%
TATATGAGGAGGAGTTTGGA+GGG + chr3_4:1619400-1619419 None:intergenic 40.0%
!! AGAAAATAGAGCTTTGGGAG+GGG + chr3_4:1619491-1619510 None:intergenic 40.0%
AGGGCTTGTAAAAAAGGAAG+TGG + chr3_4:1619516-1619535 None:intergenic 40.0%
CACATGAAATCCTCGTAAAG+TGG + chr3_4:1619923-1619942 None:intergenic 40.0%
AAGACATGCCTTCAACTTGT+GGG - chr3_4:1620056-1620075 Msa0484290:intron 40.0%
!! TTTTCAGACCCACAAGTTGA+AGG + chr3_4:1620067-1620086 None:intergenic 40.0%
! GCTTGTGCCACATCAATTTT+AGG + chr3_4:1620118-1620137 None:intergenic 40.0%
GAATCTATATCTAATGGGGC+AGG - chr3_4:1620151-1620170 Msa0484290:intron 40.0%
! TGCTTTTCTACTTGACAAGG+AGG - chr3_4:1620369-1620388 Msa0484290:intron 40.0%
AGAAAAGTTACAGCAACAGG+AGG - chr3_4:1620435-1620454 Msa0484290:intron 40.0%
GAAAAGTTACAGCAACAGGA+GGG - chr3_4:1620436-1620455 Msa0484290:intron 40.0%
! GGCATTGAAGATATGAAGGA+TGG - chr3_4:1620517-1620536 Msa0484290:intron 40.0%
TGCCAAAAAGAGAACATACC+AGG + chr3_4:1620555-1620574 None:intergenic 40.0%
TGGATATCAGCAGCAGAAAT+TGG + chr3_4:1620774-1620793 None:intergenic 40.0%
! GTTTTGTGAATAGAGGGGTG+TGG + chr3_4:1616024-1616043 None:intergenic 45.0%
! TCTAGCAGTAACGGAAGAGA+GGG + chr3_4:1616083-1616102 None:intergenic 45.0%
TGATGCGTTACCTGAGAGAA+TGG + chr3_4:1616131-1616150 None:intergenic 45.0%
!! GCGTTTGATGATGAAGAAGG+TGG - chr3_4:1616442-1616461 Msa0484290:intron 45.0%
CGAGTACCTTGAAGAAGTTG+AGG - chr3_4:1616483-1616502 Msa0484290:intron 45.0%
CCTTGAAGAAGTTGAGGAAC+GGG - chr3_4:1616489-1616508 Msa0484290:intron 45.0%
! AAAACCCTAGGAGTGTGTTC+TGG + chr3_4:1616689-1616708 None:intergenic 45.0%
TCTACACACACTCACCTAAC+CGG + chr3_4:1616715-1616734 None:intergenic 45.0%
! GAGACGGAGGGAGTATAAAA+GGG + chr3_4:1616769-1616788 None:intergenic 45.0%
! AGAGACGGAGGGAGTATAAA+AGG + chr3_4:1616770-1616789 None:intergenic 45.0%
TCCGGGTTTCATGAGTTTCT+GGG - chr3_4:1617057-1617076 Msa0484290:CDS 45.0%
!! CAGCTCAAAGGAGTATTCTC+TGG + chr3_4:1617110-1617129 None:intergenic 45.0%
CAGAGAATACTCCTTTGAGC+TGG - chr3_4:1617108-1617127 Msa0484290:CDS 45.0%
!! TAAGTACCATGTGATGGGTG+AGG - chr3_4:1617153-1617172 Msa0484290:CDS 45.0%
!! AAGTACCATGTGATGGGTGA+GGG - chr3_4:1617154-1617173 Msa0484290:CDS 45.0%
CAAGGGATCTTTACCCTAGT+CGG - chr3_4:1617233-1617252 Msa0484290:CDS 45.0%
GTTGTATGGTACCTCAGCAA+CGG + chr3_4:1617319-1617338 None:intergenic 45.0%
AGCAAAGTGCAGATGACGAA+GGG + chr3_4:1617956-1617975 None:intergenic 45.0%
AAGCAAAGTGCAGATGACGA+AGG + chr3_4:1617957-1617976 None:intergenic 45.0%
! CAAAGGGTACATGAAAAGGC+AGG - chr3_4:1618132-1618151 Msa0484290:intron 45.0%
AAACTCCAGCATTCCCATCA+GGG + chr3_4:1618183-1618202 None:intergenic 45.0%
GAACTACCTGATGACCATCA+TGG + chr3_4:1618228-1618247 None:intergenic 45.0%
ATTTGTGAGGACAGTGTCAG+TGG - chr3_4:1618357-1618376 Msa0484290:CDS 45.0%
GTCGAATAAAATCAGGGACC+AGG + chr3_4:1618564-1618583 None:intergenic 45.0%
! TGGGACTGATTGACTTTGTC+TGG - chr3_4:1618596-1618615 Msa0484290:intron 45.0%
TTGCTATGTCGTGCAGATTG+TGG - chr3_4:1618723-1618742 Msa0484290:intron 45.0%
TCGTGCAGATTGTGGAACTA+TGG - chr3_4:1618731-1618750 Msa0484290:intron 45.0%
CAGCATCTGGATCTGGATAA+GGG + chr3_4:1618897-1618916 None:intergenic 45.0%
TCAGCATCTGGATCTGGATA+AGG + chr3_4:1618898-1618917 None:intergenic 45.0%
TGTTCTTCAGCATCTGGATC+TGG + chr3_4:1618904-1618923 None:intergenic 45.0%
!! AGTGTTGTTTGTGTGAGGAC+TGG - chr3_4:1618938-1618957 Msa0484290:CDS 45.0%
CTATGTTTGGGAGTTTGGAG+AGG - chr3_4:1619196-1619215 Msa0484290:intron 45.0%
TTTGGGAGTTTGGAGAGGAA+TGG - chr3_4:1619201-1619220 Msa0484290:intron 45.0%
TTTCGGAGGGTTGAGATTAG+AGG - chr3_4:1619233-1619252 Msa0484290:intron 45.0%
GTATATGAGGAGGAGTTTGG+AGG + chr3_4:1619401-1619420 None:intergenic 45.0%
TAGGGGAGGGCTTGTAAAAA+AGG + chr3_4:1619522-1619541 None:intergenic 45.0%
TGGGGCAAGACCACAATAAA+AGG + chr3_4:1619621-1619640 None:intergenic 45.0%
! TGGGAATCTGAAGCATAGCA+AGG + chr3_4:1619883-1619902 None:intergenic 45.0%
CAGATTCCCAGAGATGAAGA+AGG - chr3_4:1619893-1619912 Msa0484290:intron 45.0%
TGCTACTGCTCAAGTTAGCA+AGG - chr3_4:1620018-1620037 Msa0484290:intron 45.0%
GCTCAAGTTAGCAAGGACAA+AGG - chr3_4:1620025-1620044 Msa0484290:intron 45.0%
GAAGACATGCCTTCAACTTG+TGG - chr3_4:1620055-1620074 Msa0484290:intron 45.0%
CTATTACAACTTCCACCAGG+AGG + chr3_4:1620181-1620200 None:intergenic 45.0%
CTGCTATTACAACTTCCACC+AGG + chr3_4:1620184-1620203 None:intergenic 45.0%
CAGCAACAATGTTCACACCA+AGG + chr3_4:1620246-1620265 None:intergenic 45.0%
TGACAAGGAGGACTCAATTG+TGG - chr3_4:1620381-1620400 Msa0484290:intron 45.0%
!! AGAAATTGGCTTGGACGAGT+CGG + chr3_4:1620760-1620779 None:intergenic 45.0%
ATCAGCAGCAGAAATTGGCT+TGG + chr3_4:1620769-1620788 None:intergenic 45.0%
! CAGCTGTCTTGGTGGTTTAA+AGG - chr3_4:1620844-1620863 Msa0484290:intron 45.0%
! TTGGTGGTTTAAAGGCTCGT+TGG - chr3_4:1620852-1620871 Msa0484290:intron 45.0%
!! AATAAAAAATAATAAATAGA+TGG - chr3_4:1620658-1620677 Msa0484290:CDS 5.0%
! CAGTAACGGAAGAGAGGGTT+TGG + chr3_4:1616078-1616097 None:intergenic 50.0%
! GTCTAGCAGTAACGGAAGAG+AGG + chr3_4:1616084-1616103 None:intergenic 50.0%
CCCGTTCCTCAACTTCTTCA+AGG + chr3_4:1616492-1616511 None:intergenic 50.0%
TTGGTCCAGAACACACTCCT+AGG - chr3_4:1616681-1616700 Msa0484290:CDS 50.0%
TGGTCCAGAACACACTCCTA+GGG - chr3_4:1616682-1616701 Msa0484290:CDS 50.0%
! ACACTCCTAGGGTTTTTCCC+CGG - chr3_4:1616693-1616712 Msa0484290:CDS 50.0%
TACACACACTCACCTAACCG+GGG + chr3_4:1616713-1616732 None:intergenic 50.0%
CTACACACACTCACCTAACC+GGG + chr3_4:1616714-1616733 None:intergenic 50.0%
!! ACGGAGGGAGTATTGTTCTC+CGG - chr3_4:1617039-1617058 Msa0484290:CDS 50.0%
CTCCGGGTTTCATGAGTTTC+TGG - chr3_4:1617056-1617075 Msa0484290:CDS 50.0%
GCCCAGAAACTCATGAAACC+CGG + chr3_4:1617061-1617080 None:intergenic 50.0%
TCTGGGCCCTCAAATCCATA+TGG - chr3_4:1617074-1617093 Msa0484290:CDS 50.0%
CTGGGCCCTCAAATCCATAT+GGG - chr3_4:1617075-1617094 Msa0484290:CDS 50.0%
TGGGCCCTCAAATCCATATG+GGG - chr3_4:1617076-1617095 Msa0484290:CDS 50.0%
TGCGCCCCATATGGATTTGA+GGG + chr3_4:1617083-1617102 None:intergenic 50.0%
ATGCGCCCCATATGGATTTG+AGG + chr3_4:1617084-1617103 None:intergenic 50.0%
TCCTTTGAGCTGGCGATGAT+TGG - chr3_4:1617118-1617137 Msa0484290:CDS 50.0%
CCTTTGAGCTGGCGATGATT+GGG - chr3_4:1617119-1617138 Msa0484290:CDS 50.0%
! GTGTTGTGTACTGGTCTGGT+TGG - chr3_4:1617176-1617195 Msa0484290:CDS 50.0%
! TGTGTACTGGTCTGGTTGGT+CGG - chr3_4:1617180-1617199 Msa0484290:CDS 50.0%
AAATGGCCGAACCTAGACCA+GGG + chr3_4:1617210-1617229 None:intergenic 50.0%
TAGGTTCGGCCATTTCACCA+AGG - chr3_4:1617215-1617234 Msa0484290:CDS 50.0%
AGGTTCGGCCATTTCACCAA+GGG - chr3_4:1617216-1617235 Msa0484290:CDS 50.0%
CGACTAGGGTAAAGATCCCT+TGG + chr3_4:1617235-1617254 None:intergenic 50.0%
CTCTCAGAATGAGGTCAAGC+AGG + chr3_4:1617259-1617278 None:intergenic 50.0%
CAGCAACGGTACTCTGTCTA+TGG + chr3_4:1617305-1617324 None:intergenic 50.0%
!! TAGACAGAGTACCGTTGCTG+AGG - chr3_4:1617305-1617324 Msa0484290:intron 50.0%
GCAAAGTGCAGATGACGAAG+GGG + chr3_4:1617955-1617974 None:intergenic 50.0%
!!! TTAGTTTTGGGGGGCGATGA+AGG - chr3_4:1618091-1618110 Msa0484290:intron 50.0%
AACTCCAGCATTCCCATCAG+GGG + chr3_4:1618182-1618201 None:intergenic 50.0%
CAAACTCCAGCATTCCCATC+AGG + chr3_4:1618184-1618203 None:intergenic 50.0%
TGCTCGTTGTCTTGCCATGA+TGG - chr3_4:1618211-1618230 Msa0484290:CDS 50.0%
GTCTTGCCATGATGGTCATC+AGG - chr3_4:1618219-1618238 Msa0484290:CDS 50.0%
TGGTCTCGAGTCTTCTGATG+AGG - chr3_4:1618978-1618997 Msa0484290:CDS 50.0%
CTCGAGTCTTCTGATGAGGT+TGG - chr3_4:1618982-1619001 Msa0484290:CDS 50.0%
GGAGTTTGGAGAGGAATGGA+GGG - chr3_4:1619205-1619224 Msa0484290:intron 50.0%
GAGTTTGGAGAGGAATGGAG+GGG - chr3_4:1619206-1619225 Msa0484290:intron 50.0%
! TGGAGGGTTTTGCAGGGTTT+GGG + chr3_4:1619384-1619403 None:intergenic 50.0%
! TTGGAGGGTTTTGCAGGGTT+TGG + chr3_4:1619385-1619404 None:intergenic 50.0%
! GGAGTTTGGAGGGTTTTGCA+GGG + chr3_4:1619390-1619409 None:intergenic 50.0%
! AGGAGTTTGGAGGGTTTTGC+AGG + chr3_4:1619391-1619410 None:intergenic 50.0%
TTTGGGAGGGGAAGGCTTTA+GGG + chr3_4:1619479-1619498 None:intergenic 50.0%
!! AATAGAGCTTTGGGAGGGGA+AGG + chr3_4:1619487-1619506 None:intergenic 50.0%
!!! GTTTGGGAGTTTTGAGGGGA+GGG + chr3_4:1619545-1619564 None:intergenic 50.0%
!!! TGTTTGGGAGTTTTGAGGGG+AGG + chr3_4:1619546-1619565 None:intergenic 50.0%
GGCTCACCTTCTTCATCTCT+GGG + chr3_4:1619902-1619921 None:intergenic 50.0%
TGGCTCACCTTCTTCATCTC+TGG + chr3_4:1619903-1619922 None:intergenic 50.0%
! AGAAGGTGAGCCACTTTACG+AGG - chr3_4:1619910-1619929 Msa0484290:intron 50.0%
CCAGCCACCAATATTACCTC+AGG + chr3_4:1619986-1620005 None:intergenic 50.0%
! CCTGAGGTAATATTGGTGGC+TGG - chr3_4:1619983-1620002 Msa0484290:intron 50.0%
TTGTGGGTCTGAAAAGCCAC+TGG - chr3_4:1620072-1620091 Msa0484290:intron 50.0%
TGTGGGTCTGAAAAGCCACT+GGG - chr3_4:1620073-1620092 Msa0484290:intron 50.0%
GATGTGGCACAAGCTTCTGT+TGG - chr3_4:1620124-1620143 Msa0484290:intron 50.0%
GCTGCTTCCCCAGTTATACA+TGG - chr3_4:1620262-1620281 Msa0484290:intron 50.0%
CAGCTGAAACTCACCCTACA+CGG + chr3_4:1620830-1620849 None:intergenic 50.0%
AGGGTGAGTTTCAGCTGTCT+TGG - chr3_4:1620833-1620852 Msa0484290:intron 50.0%
GTGAGTTTCAGCTGTCTTGG+TGG - chr3_4:1620836-1620855 Msa0484290:intron 50.0%
! AAGGTACTCGCCGAGCGTAA+CGG + chr3_4:1616473-1616492 None:intergenic 55.0%
AGAAGTTGAGGAACGGGAGC+TGG - chr3_4:1616495-1616514 Msa0484290:intron 55.0%
CCTAACCGGGGAAAAACCCT+AGG + chr3_4:1616701-1616720 None:intergenic 55.0%
! CCTAGGGTTTTTCCCCGGTT+AGG - chr3_4:1616698-1616717 Msa0484290:CDS 55.0%
!! CGGAGGGAGTATTGTTCTCC+GGG - chr3_4:1617040-1617059 Msa0484290:CDS 55.0%
CCCAATCATCGCCAGCTCAA+AGG + chr3_4:1617122-1617141 None:intergenic 55.0%
CAACACCCTCACCCATCACA+TGG + chr3_4:1617162-1617181 None:intergenic 55.0%
!! TGGGTGAGGGTGTTGTGTAC+TGG - chr3_4:1617167-1617186 Msa0484290:CDS 55.0%
!! GAGGGTGTTGTGTACTGGTC+TGG - chr3_4:1617172-1617191 Msa0484290:CDS 55.0%
! GTGTACTGGTCTGGTTGGTC+GGG - chr3_4:1617181-1617200 Msa0484290:CDS 55.0%
AATGGCCGAACCTAGACCAG+GGG + chr3_4:1617209-1617228 None:intergenic 55.0%
GAAATGGCCGAACCTAGACC+AGG + chr3_4:1617211-1617230 None:intergenic 55.0%
GATGGGGGTCTCTCAGAATG+AGG + chr3_4:1617268-1617287 None:intergenic 55.0%
GTACTCTGTCTATGGACGCC+AGG + chr3_4:1617297-1617316 None:intergenic 55.0%
TGTGAGGACAGTGTCAGTGG+CGG - chr3_4:1618360-1618379 Msa0484290:CDS 55.0%
GGGAGTTTGGAGAGGAATGG+AGG - chr3_4:1619204-1619223 Msa0484290:intron 55.0%
TTTGGAGAGGAATGGAGGGG+AGG - chr3_4:1619209-1619228 Msa0484290:intron 55.0%
TTGGAGAGGAATGGAGGGGA+GGG - chr3_4:1619210-1619229 Msa0484290:intron 55.0%
AGGAATGGAGGGGAGGGTTT+CGG - chr3_4:1619216-1619235 Msa0484290:intron 55.0%
! TTGGGAGGGGAAGGCTTTAG+GGG + chr3_4:1619478-1619497 None:intergenic 55.0%
! CTTTGGGAGGGGAAGGCTTT+AGG + chr3_4:1619480-1619499 None:intergenic 55.0%
!!! GAGTTTTGAGGGGAGGGTAG+GGG + chr3_4:1619539-1619558 None:intergenic 55.0%
!!! GGAGTTTTGAGGGGAGGGTA+GGG + chr3_4:1619540-1619559 None:intergenic 55.0%
AAGAATAAGCGGCGCCGTGT+AGG - chr3_4:1620813-1620832 Msa0484290:intron 55.0%
AGAATAAGCGGCGCCGTGTA+GGG - chr3_4:1620814-1620833 Msa0484290:intron 55.0%
! TACTCGCCGAGCGTAACGGA+TGG + chr3_4:1616469-1616488 None:intergenic 60.0%
! TCTGGGACATGCGCCCCATA+TGG + chr3_4:1617092-1617111 None:intergenic 60.0%
ATGGCCGAACCTAGACCAGG+GGG + chr3_4:1617208-1617227 None:intergenic 60.0%
GAGGTCAAGCAGGCCGACTA+GGG + chr3_4:1617249-1617268 None:intergenic 60.0%
TGAGGTCAAGCAGGCCGACT+AGG + chr3_4:1617250-1617269 None:intergenic 60.0%
! TTCTGAGAGACCCCCATCCC+TGG - chr3_4:1617270-1617289 Msa0484290:intron 60.0%
TCTGAGAGACCCCCATCCCT+GGG - chr3_4:1617271-1617290 Msa0484290:intron 60.0%
!! TTTTGGGGGGCGATGAAGGC+AGG - chr3_4:1618095-1618114 Msa0484290:intron 60.0%
TTTGGGGGGCGATGAAGGCA+GGG - chr3_4:1618096-1618115 Msa0484290:intron 60.0%
TGCATCACCTGCACCCCTGA+TGG - chr3_4:1618166-1618185 Msa0484290:CDS 60.0%
GCATCACCTGCACCCCTGAT+GGG - chr3_4:1618167-1618186 Msa0484290:CDS 60.0%
! AGCATTCCCATCAGGGGTGC+AGG + chr3_4:1618176-1618195 None:intergenic 60.0%
TGCACCCCTGATGGGAATGC+TGG - chr3_4:1618175-1618194 Msa0484290:CDS 60.0%
! ATCTGGATAAGGGCGCGCAC+AGG + chr3_4:1618887-1618906 None:intergenic 60.0%
AATGGAGGGGAGGGTTTCGG+AGG - chr3_4:1619219-1619238 Msa0484290:intron 60.0%
ATGGAGGGGAGGGTTTCGGA+GGG - chr3_4:1619220-1619239 Msa0484290:intron 60.0%
!! TGGGAGGGGAAGGCTTTAGG+GGG + chr3_4:1619477-1619496 None:intergenic 60.0%
TTTGAGGGGAGGGTAGGGGA+GGG + chr3_4:1619535-1619554 None:intergenic 60.0%
!! TTTTGAGGGGAGGGTAGGGG+AGG + chr3_4:1619536-1619555 None:intergenic 60.0%
!!! GGGAGTTTTGAGGGGAGGGT+AGG + chr3_4:1619541-1619560 None:intergenic 60.0%
AATGGGGCAGGTCTTCCTCC+TGG - chr3_4:1620163-1620182 Msa0484290:intron 60.0%
! GGATGGGCTTCGCACTTTCC+TGG - chr3_4:1620534-1620553 Msa0484290:intron 60.0%
GGTGGGCCATCCGTTACGCT+CGG - chr3_4:1616460-1616479 Msa0484290:intron 65.0%
GGGTCCCCCTGGTCTAGGTT+CGG - chr3_4:1617201-1617220 Msa0484290:CDS 65.0%
GTCTATGGACGCCAGGCCCA+GGG + chr3_4:1617290-1617309 None:intergenic 65.0%
TGTCTATGGACGCCAGGCCC+AGG + chr3_4:1617291-1617310 None:intergenic 65.0%
! GGACAGTGTCAGTGGCGGAG+TGG - chr3_4:1618365-1618384 Msa0484290:CDS 65.0%
! TCTGGTTGGTCGGGTCCCCC+TGG - chr3_4:1617190-1617209 Msa0484290:CDS 70.0%
TGGTCGGGTCCCCCTGGTCT+AGG - chr3_4:1617196-1617215 Msa0484290:CDS 70.0%
TGGACGCCAGGCCCAGGGAT+GGG + chr3_4:1617285-1617304 None:intergenic 70.0%
ATGGACGCCAGGCCCAGGGA+TGG + chr3_4:1617286-1617305 None:intergenic 70.0%
GGGGCAGGTCTTCCTCCTGG+TGG - chr3_4:1620166-1620185 Msa0484290:intron 70.0%
GAGACCCCCATCCCTGGGCC+TGG - chr3_4:1617276-1617295 Msa0484290:intron 75.0%
GACGCCAGGCCCAGGGATGG+GGG + chr3_4:1617283-1617302 None:intergenic 75.0%
GGACGCCAGGCCCAGGGATG+GGG + chr3_4:1617284-1617303 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 1616017 1621147 1616017 ID=Msa0484290;Name=Msa0484290
chr3_4 mRNA 1616017 1621147 1616017 ID=Msa0484290-mRNA-1;Parent=Msa0484290;Name=Msa0484290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=166|1|1|1|0.8|0.66|6|308|417
chr3_4 exon 1616017 1616414 1616017 ID=Msa0484290-mRNA-1:exon:483;Parent=Msa0484290-mRNA-1
chr3_4 exon 1616609 1617268 1616609 ID=Msa0484290-mRNA-1:exon:482;Parent=Msa0484290-mRNA-1
chr3_4 exon 1618165 1618425 1618165 ID=Msa0484290-mRNA-1:exon:481;Parent=Msa0484290-mRNA-1
chr3_4 exon 1618924 1619082 1618924 ID=Msa0484290-mRNA-1:exon:480;Parent=Msa0484290-mRNA-1
chr3_4 exon 1620648 1620774 1620648 ID=Msa0484290-mRNA-1:exon:479;Parent=Msa0484290-mRNA-1
chr3_4 exon 1621025 1621147 1621025 ID=Msa0484290-mRNA-1:exon:478;Parent=Msa0484290-mRNA-1
chr3_4 five_prime_UTR 1621025 1621147 1621025 ID=Msa0484290-mRNA-1:five_prime_utr;Parent=Msa0484290-mRNA-1
chr3_4 five_prime_UTR 1620732 1620774 1620732 ID=Msa0484290-mRNA-1:five_prime_utr;Parent=Msa0484290-mRNA-1
chr3_4 CDS 1620648 1620731 1620648 ID=Msa0484290-mRNA-1:cds;Parent=Msa0484290-mRNA-1
chr3_4 CDS 1618924 1619082 1618924 ID=Msa0484290-mRNA-1:cds;Parent=Msa0484290-mRNA-1
chr3_4 CDS 1618165 1618425 1618165 ID=Msa0484290-mRNA-1:cds;Parent=Msa0484290-mRNA-1
chr3_4 CDS 1616609 1617268 1616609 ID=Msa0484290-mRNA-1:cds;Parent=Msa0484290-mRNA-1
chr3_4 CDS 1616325 1616414 1616325 ID=Msa0484290-mRNA-1:cds;Parent=Msa0484290-mRNA-1
chr3_4 three_prime_UTR 1616017 1616324 1616017 ID=Msa0484290-mRNA-1:three_prime_utr;Parent=Msa0484290-mRNA-1
Gene Sequence

>Msa0484290

ATGGATTCTGCGTTTGATGATGAAGAAGGTGGGCCATCCGTTACGCTCGGCGAGTACCTTGAAGAAGTTGAGGAACGGGAGCTGGAAGCTGATTTAGTTTTGGGGGGCGATGAAGGCAGGGAGTGTACCTATAACAAAGGGTACATGAAAAGGCAGGCAATTTTCTCTTGCATCACCTGCACCCCTGATGGGAATGCTGGAGTTTGCACTGCTTGCTCGTTGTCTTGCCATGATGGTCATCAGATTGTGGAACTATGGACAAAAAGAAACTTCAGATGTGACTGTGGGAATTCAAAGTTTAATGAATTCTACTGCAAGATTTTCCCAAGTAAAGATATTGAGAATGTTGAGAATTCGTACAATCACAACTTTAAAGGTTTGTATTGCACCTGTGCGCGCCCTTATCCAGATCCAGATGCTGAAGAACAAATAGAGATGATACAGTGTTGTTTGTGTGAGGACTGGTTTCATGAAGAGCATCTTGGTCTCGAGTCTTCTGATGAGATTCCCAGAGATGAAGAAGGTGAGCCACTTTACGAGGATTTCATGTGTAAGGCATGCTCTGAAGTATGTTTCTTTCTGAAATTATATCCTGAGGTAATATTGGTGGCTGGCAAGCAGTCAAATGCTACTGCTCAAGTTAGCAAGGACAAAGGTATTTTGGAAGACATGCCTTCAACTTGTGGGTCTGAAAAGCCACTGGGTGATACTTCATATAATTCTCCTAAAATTGATGTGGCACAAGCTTCTGTTGGTTCTGAATCTATATCTAATGGGGCAGGTCTTCCTCCTGGTGGAAGTTGTAATAGCAGTATATGCACTGAAGGCGCCAGTTTGCATGTTAATTGTCTCCTTGGTGTGAACATTGTTGCTGCTTCCCCAGTTATACATGGTAAAGCAATGTTCCTTTCCAAAAATTGGAGAGATGCTCTATGCAAATGCAAGAATTGTTTGGAATATTATCATCAGAAGCGGATTGCTTTTCTACTTGACAAGGAGGACTCAATTGTGGAGTATGAGAAAATTGCGAAGCAAAGAAGAGAAGAAAAGTTACAGCAACAGGAGGGTGCTGAGCTAAGTCTTTTTAATAAACTTGGACATGTAGAGAAAGTCGAGATCTTGAAGGGCATTGAAGATATGAAGGATGGGCTTCGCACTTTCCTGGAGTCAGCCGACTCGTCCAAGCCAATTTCTGCTGCTGATATCCATCAGTTTTTTGATGACATTAAGAATAAGCGGCGCCGTGTAGGGTGA

Protein sequence

>Msa0484290

MDSAFDDEEGGPSVTLGEYLEEVEERELEADLVLGGDEGRECTYNKGYMKRQAIFSCITCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFNEFYCKIFPSKDIENVENSYNHNFKGLYCTCARPYPDPDAEEQIEMIQCCLCEDWFHEEHLGLESSDEIPRDEEGEPLYEDFMCKACSEVCFFLKLYPEVILVAGKQSNATAQVSKDKGILEDMPSTCGSEKPLGDTSYNSPKIDVAQASVGSESISNGAGLPPGGSCNSSICTEGASLHVNCLLGVNIVAASPVIHGKAMFLSKNWRDALCKCKNCLEYYHQKRIAFLLDKEDSIVEYEKIAKQRREEKLQQQEGAELSLFNKLGHVEKVEILKGIEDMKDGLRTFLESADSSKPISAADIHQFFDDIKNKRRRVG*