Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991080 | AFK35117.1 | 88.660 | 97 | 3 | 2 | 14 | 103 | 344 | 439 | 3.14e-50 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991080 | sp|Q0WUY1|NADKC_ARATH | 71.429 | 77 | 15 | 1 | 34 | 103 | 377 | 453 | 3.30e-30 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991080 | I3S4C5 | 88.660 | 97 | 3 | 2 | 14 | 103 | 344 | 439 | 1.50e-50 | 177 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100090 | Msa0991080 | 0.805022 | 1.631658e-49 | -8.615850e-47 |
| Msa0116770 | Msa0991080 | 0.813193 | 2.896533e-51 | -8.615850e-47 |
| Msa0657970 | Msa0991080 | 0.802130 | 6.491079e-49 | -8.615850e-47 |
| Msa0731550 | Msa0991080 | 0.813170 | 2.931461e-51 | -8.615850e-47 |
| Msa0766630 | Msa0991080 | 0.839466 | 1.558589e-57 | -8.615850e-47 |
| Msa0153910 | Msa0991080 | 0.806429 | 8.261272e-50 | -8.615850e-47 |
| Msa0165210 | Msa0991080 | 0.808416 | 3.130501e-50 | -8.615850e-47 |
| Msa0165220 | Msa0991080 | 0.810913 | 9.099676e-51 | -8.615850e-47 |
| Msa0175740 | Msa0991080 | 0.822642 | 2.124043e-53 | -8.615850e-47 |
| Msa0401310 | Msa0991080 | 0.866558 | 2.612015e-65 | -8.615850e-47 |
| Msa0402290 | Msa0991080 | 0.806884 | 6.621730e-50 | -8.615850e-47 |
| Msa0408110 | Msa0991080 | 0.869177 | 3.763496e-66 | -8.615850e-47 |
| Msa0414230 | Msa0991080 | 0.818015 | 2.443361e-52 | -8.615850e-47 |
| Msa0983090 | Msa0991080 | 0.906435 | 1.489303e-80 | -8.615850e-47 |
| Msa0991080 | Msa0998690 | 0.801434 | 9.020545e-49 | -8.615850e-47 |
| Msa0991080 | Msa1014540 | 0.830076 | 3.599712e-55 | -8.615850e-47 |
| Msa0991080 | Msa1082500 | 0.821777 | 3.371345e-53 | -8.615850e-47 |
| Msa0991080 | Msa1107800 | 0.813622 | 2.331535e-51 | -8.615850e-47 |
| Msa0991080 | Msa1137690 | 0.827560 | 1.462292e-54 | -8.615850e-47 |
| Msa0991080 | Msa1162550 | -0.800377 | 1.482731e-48 | -8.615850e-47 |
| Msa0991080 | Msa1195920 | 0.809188 | 2.141181e-50 | -8.615850e-47 |
| Msa0991080 | Msa1244250 | 0.814629 | 1.397965e-51 | -8.615850e-47 |
| Msa0991080 | Msa1249490 | 0.814171 | 1.764687e-51 | -8.615850e-47 |
| Msa0991080 | Msa1273920 | 0.891226 | 4.819608e-74 | -8.615850e-47 |
| Msa0991080 | Msa1284680 | 0.831509 | 1.603672e-55 | -8.615850e-47 |
| Msa0355220 | Msa0991080 | 0.801046 | 1.082995e-48 | -8.615850e-47 |
| Msa0484780 | Msa0991080 | 0.803907 | 2.785634e-49 | -8.615850e-47 |
| Msa0532350 | Msa0991080 | 0.812230 | 4.706850e-51 | -8.615850e-47 |
| Msa0558690 | Msa0991080 | 0.801343 | 9.416048e-49 | -8.615850e-47 |
| Msa0562440 | Msa0991080 | 0.819068 | 1.410208e-52 | -8.615850e-47 |
| Msa0885280 | Msa0991080 | 0.804728 | 1.879326e-49 | -8.615850e-47 |
| Msa0907260 | Msa0991080 | 0.809038 | 2.305013e-50 | -8.615850e-47 |
| Msa0918700 | Msa0991080 | 0.870282 | 1.641407e-66 | -8.615850e-47 |
| Msa0956270 | Msa0991080 | 0.811804 | 5.830146e-51 | -8.615850e-47 |
| Msa0975220 | Msa0991080 | 0.809935 | 1.479295e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991080 | MtrunA17_Chr1g0187021 | 88.660 | 97 | 3 | 2 | 14 | 103 | 344 | 439 | 6.36e-54 | 177 |
| Msa0991080 | MtrunA17_Chr1g0187071 | 69.000 | 100 | 23 | 2 | 11 | 103 | 340 | 438 | 1.05e-38 | 136 |
| Msa0991080 | MtrunA17_Chr1g0187051 | 68.041 | 97 | 13 | 2 | 14 | 103 | 339 | 424 | 4.22e-37 | 132 |
| Msa0991080 | MtrunA17_Chr7g0260781 | 55.000 | 100 | 31 | 2 | 11 | 103 | 202 | 294 | 9.22e-28 | 105 |
| Msa0991080 | MtrunA17_Chr1g0184551 | 61.628 | 86 | 24 | 2 | 25 | 103 | 347 | 430 | 3.17e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991080 | AT1G04280.2 | 71.429 | 77 | 15 | 1 | 34 | 103 | 323 | 399 | 2.07e-31 | 117 |
| Msa0991080 | AT1G04280.1 | 71.429 | 77 | 15 | 1 | 34 | 103 | 377 | 453 | 3.36e-31 | 116 |
| Msa0991080 | AT1G06750.3 | 59.794 | 97 | 25 | 3 | 14 | 103 | 342 | 431 | 3.32e-29 | 111 |
| Msa0991080 | AT1G06750.1 | 59.794 | 97 | 25 | 3 | 14 | 103 | 342 | 431 | 3.32e-29 | 111 |
| Msa0991080 | AT1G06750.2 | 59.794 | 97 | 25 | 3 | 14 | 103 | 349 | 438 | 3.51e-29 | 111 |
| Msa0991080 | AT2G30630.1 | 59.794 | 97 | 25 | 3 | 14 | 103 | 356 | 445 | 1.23e-28 | 109 |
| Msa0991080 | AT2G30630.2 | 59.794 | 97 | 25 | 3 | 14 | 103 | 377 | 466 | 1.42e-28 | 109 |
Find 26 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACAAGTTTGCAATATTT+TGG | 0.119289 | 6_4:-54553834 | None:intergenic |
| CTTGTAGCTCTGCTTCTGTT+AGG | 0.288048 | 6_4:-54554539 | None:intergenic |
| GGATATCTTGCAGTTATTAG+AGG | 0.406489 | 6_4:+54553629 | Msa0991080:CDS |
| TTGCAGTTATTAGAGGCATT+AGG | 0.422529 | 6_4:+54553636 | Msa0991080:CDS |
| TTGTAGCTCTGCTTCTGTTA+GGG | 0.423721 | 6_4:-54554538 | None:intergenic |
| CAACAAGAGGAAAATTCTAC+AGG | 0.441415 | 6_4:+54553551 | Msa0991080:CDS |
| CTCTATTGAATCTGCAGAAG+CGG | 0.490130 | 6_4:+54554508 | Msa0991080:CDS |
| CGCTTCTGCAGATTCAATAG+AGG | 0.492291 | 6_4:-54554507 | None:intergenic |
| GCAAACTTGTTGACAGTGCT+AGG | 0.511680 | 6_4:+54553844 | Msa0991080:CDS |
| CTAGTTGGTGTGGTTTGTGA+TGG | 0.513280 | 6_4:+54553608 | Msa0991080:CDS |
| CTATACAAAGCAAGTGAATG+AGG | 0.513355 | 6_4:+54553514 | Msa0991080:CDS |
| CCAACTAGCTCAATTCTGTA+AGG | 0.525410 | 6_4:-54553593 | None:intergenic |
| CCTTACAGAATTGAGCTAGT+TGG | 0.526663 | 6_4:+54553593 | Msa0991080:CDS |
| CAGAATTGAGCTAGTTGGTG+TGG | 0.527716 | 6_4:+54553598 | Msa0991080:CDS |
| GGAAGAGAAGAGTTGTTAGC+TGG | 0.534658 | 6_4:+54554581 | Msa0991080:CDS |
| TGCTGTTGGTGGTCCACCAA+AGG | 0.575982 | 6_4:+54553881 | Msa0991080:CDS |
| AATGACATGAAGGGCAGTGA+GGG | 0.577678 | 6_4:+54553767 | Msa0991080:intron |
| GTTGTTAGCTGGTAATGAAG+AGG | 0.582848 | 6_4:+54554592 | Msa0991080:CDS |
| CGCTATTGCACAGATGCTGT+TGG | 0.590494 | 6_4:+54553867 | Msa0991080:CDS |
| TATTGCACAGATGCTGTTGG+TGG | 0.593752 | 6_4:+54553870 | Msa0991080:CDS |
| AGAAGAAGAACATCAACAAG+AGG | 0.597156 | 6_4:+54553538 | Msa0991080:CDS |
| AACAAGAGGAAAATTCTACA+GGG | 0.606029 | 6_4:+54553552 | Msa0991080:CDS |
| TATACAAAGCAAGTGAATGA+GGG | 0.610525 | 6_4:+54553515 | Msa0991080:CDS |
| AGTACTGCTTCAAGAAGTCG+AGG | 0.646449 | 6_4:+54554560 | Msa0991080:CDS |
| TAATGACATGAAGGGCAGTG+AGG | 0.672210 | 6_4:+54553766 | Msa0991080:intron |
| ACAAGAGGAAAATTCTACAG+GGG | 0.709176 | 6_4:+54553553 | Msa0991080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTACTATATTAATATACTT+TGG | + | chr6_4:54553677-54553696 | Msa0991080:intron | 15.0% |
| !!! | TATAATTAACATTTTCCTTT+TGG | + | chr6_4:54553724-54553743 | Msa0991080:intron | 15.0% |
| !!! | CTTTTCATTATTGATTTATT+GGG | + | chr6_4:54554163-54554182 | Msa0991080:intron | 15.0% |
| !!! | TTTTCATTATTGATTTATTG+GGG | + | chr6_4:54554164-54554183 | Msa0991080:intron | 15.0% |
| !!! | AATGTAAAACATTTTGAATA+AGG | - | chr6_4:54554238-54554257 | None:intergenic | 15.0% |
| !! | TCTACTATATTAATATACTT+TGG | + | chr6_4:54553677-54553696 | Msa0991080:intron | 15.0% |
| !!! | TATAATTAACATTTTCCTTT+TGG | + | chr6_4:54553724-54553743 | Msa0991080:intron | 15.0% |
| !!! | CTTTTCATTATTGATTTATT+GGG | + | chr6_4:54554163-54554182 | Msa0991080:intron | 15.0% |
| !!! | TTTTCATTATTGATTTATTG+GGG | + | chr6_4:54554164-54554183 | Msa0991080:intron | 15.0% |
| !!! | AATGTAAAACATTTTGAATA+AGG | - | chr6_4:54554238-54554257 | None:intergenic | 15.0% |
| !! | ACTATATTAATATACTTTGG+TGG | + | chr6_4:54553680-54553699 | Msa0991080:intron | 20.0% |
| !!! | TTGTACATTTTTATTTCACA+TGG | + | chr6_4:54554058-54554077 | Msa0991080:intron | 20.0% |
| !! | CCAATAAATCAATAATGAAA+AGG | - | chr6_4:54554165-54554184 | None:intergenic | 20.0% |
| !!! | CCTTTTCATTATTGATTTAT+TGG | + | chr6_4:54554162-54554181 | Msa0991080:intron | 20.0% |
| !!! | TAAAACATTTTGAATAAGGT+TGG | - | chr6_4:54554234-54554253 | None:intergenic | 20.0% |
| !! | ATAGAGGTAAAATTATTCTA+TGG | - | chr6_4:54554494-54554513 | None:intergenic | 20.0% |
| !! | ACTATATTAATATACTTTGG+TGG | + | chr6_4:54553680-54553699 | Msa0991080:intron | 20.0% |
| !!! | TTGTACATTTTTATTTCACA+TGG | + | chr6_4:54554058-54554077 | Msa0991080:intron | 20.0% |
| !! | CCAATAAATCAATAATGAAA+AGG | - | chr6_4:54554165-54554184 | None:intergenic | 20.0% |
| !!! | CCTTTTCATTATTGATTTAT+TGG | + | chr6_4:54554162-54554181 | Msa0991080:intron | 20.0% |
| !!! | TAAAACATTTTGAATAAGGT+TGG | - | chr6_4:54554234-54554253 | None:intergenic | 20.0% |
| !! | ATAGAGGTAAAATTATTCTA+TGG | - | chr6_4:54554494-54554513 | None:intergenic | 20.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | + | chr6_4:54553488-54553507 | Msa0991080:CDS | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | + | chr6_4:54553736-54553755 | Msa0991080:intron | 25.0% |
| !! | TCAACAAGTTTGCAATATTT+TGG | - | chr6_4:54553837-54553856 | None:intergenic | 25.0% |
| ! | GAATAATATCTTCTGACTTA+CGG | - | chr6_4:54554028-54554047 | None:intergenic | 25.0% |
| ! | CTTATTAACTCAGATATCAA+AGG | - | chr6_4:54554263-54554282 | None:intergenic | 25.0% |
| ! | AATGAAATATTTCTTTCCGA+AGG | + | chr6_4:54554397-54554416 | Msa0991080:intron | 25.0% |
| ! | ATGACTGAAGTTATAAACTT+GGG | + | chr6_4:54554425-54554444 | Msa0991080:intron | 25.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | + | chr6_4:54553488-54553507 | Msa0991080:CDS | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | + | chr6_4:54553736-54553755 | Msa0991080:intron | 25.0% |
| !! | TCAACAAGTTTGCAATATTT+TGG | - | chr6_4:54553837-54553856 | None:intergenic | 25.0% |
| ! | GAATAATATCTTCTGACTTA+CGG | - | chr6_4:54554028-54554047 | None:intergenic | 25.0% |
| ! | CTTATTAACTCAGATATCAA+AGG | - | chr6_4:54554263-54554282 | None:intergenic | 25.0% |
| ! | AATGAAATATTTCTTTCCGA+AGG | + | chr6_4:54554397-54554416 | Msa0991080:intron | 25.0% |
| ! | ATGACTGAAGTTATAAACTT+GGG | + | chr6_4:54554425-54554444 | Msa0991080:intron | 25.0% |
| TATACAAAGCAAGTGAATGA+GGG | + | chr6_4:54553515-54553534 | Msa0991080:CDS | 30.0% | |
| AACAAGAGGAAAATTCTACA+GGG | + | chr6_4:54553552-54553571 | Msa0991080:CDS | 30.0% | |
| !!! | GGTGTGATTTTTTGTTATGA+TGG | + | chr6_4:54553701-54553720 | Msa0991080:intron | 30.0% |
| TCTCCTGTTAAAATTCCAAA+AGG | - | chr6_4:54553742-54553761 | None:intergenic | 30.0% | |
| ! | GTTTTGTCCTAAAATCGTTT+TGG | + | chr6_4:54553987-54554006 | Msa0991080:intron | 30.0% |
| CATTTGTTTGACAAGAACTT+TGG | - | chr6_4:54554096-54554115 | None:intergenic | 30.0% | |
| GATGACTGAAGTTATAAACT+TGG | + | chr6_4:54554424-54554443 | Msa0991080:intron | 30.0% | |
| TATACAAAGCAAGTGAATGA+GGG | + | chr6_4:54553515-54553534 | Msa0991080:CDS | 30.0% | |
| AACAAGAGGAAAATTCTACA+GGG | + | chr6_4:54553552-54553571 | Msa0991080:CDS | 30.0% | |
| !!! | GGTGTGATTTTTTGTTATGA+TGG | + | chr6_4:54553701-54553720 | Msa0991080:intron | 30.0% |
| TCTCCTGTTAAAATTCCAAA+AGG | - | chr6_4:54553742-54553761 | None:intergenic | 30.0% | |
| ! | GTTTTGTCCTAAAATCGTTT+TGG | + | chr6_4:54553987-54554006 | Msa0991080:intron | 30.0% |
| CATTTGTTTGACAAGAACTT+TGG | - | chr6_4:54554096-54554115 | None:intergenic | 30.0% | |
| GATGACTGAAGTTATAAACT+TGG | + | chr6_4:54554424-54554443 | Msa0991080:intron | 30.0% | |
| CTATACAAAGCAAGTGAATG+AGG | + | chr6_4:54553514-54553533 | Msa0991080:CDS | 35.0% | |
| AGAAGAAGAACATCAACAAG+AGG | + | chr6_4:54553538-54553557 | Msa0991080:CDS | 35.0% | |
| CAACAAGAGGAAAATTCTAC+AGG | + | chr6_4:54553551-54553570 | Msa0991080:CDS | 35.0% | |
| ACAAGAGGAAAATTCTACAG+GGG | + | chr6_4:54553553-54553572 | Msa0991080:CDS | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | + | chr6_4:54553629-54553648 | Msa0991080:CDS | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | + | chr6_4:54553636-54553655 | Msa0991080:CDS | 35.0% |
| GAGAGCTATAATGACATGAA+GGG | + | chr6_4:54553758-54553777 | Msa0991080:intron | 35.0% | |
| ! | TCTTTGGCCAAAACGATTTT+AGG | - | chr6_4:54553997-54554016 | None:intergenic | 35.0% |
| GGGAAATTATTCTTTGTGCT+AGG | + | chr6_4:54554184-54554203 | Msa0991080:intron | 35.0% | |
| ACTTCAGTCATCTATACCTT+CGG | - | chr6_4:54554416-54554435 | None:intergenic | 35.0% | |
| CTATACAAAGCAAGTGAATG+AGG | + | chr6_4:54553514-54553533 | Msa0991080:CDS | 35.0% | |
| AGAAGAAGAACATCAACAAG+AGG | + | chr6_4:54553538-54553557 | Msa0991080:CDS | 35.0% | |
| CAACAAGAGGAAAATTCTAC+AGG | + | chr6_4:54553551-54553570 | Msa0991080:CDS | 35.0% | |
| ACAAGAGGAAAATTCTACAG+GGG | + | chr6_4:54553553-54553572 | Msa0991080:CDS | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | + | chr6_4:54553629-54553648 | Msa0991080:CDS | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | + | chr6_4:54553636-54553655 | Msa0991080:CDS | 35.0% |
| GAGAGCTATAATGACATGAA+GGG | + | chr6_4:54553758-54553777 | Msa0991080:intron | 35.0% | |
| ! | TCTTTGGCCAAAACGATTTT+AGG | - | chr6_4:54553997-54554016 | None:intergenic | 35.0% |
| GGGAAATTATTCTTTGTGCT+AGG | + | chr6_4:54554184-54554203 | Msa0991080:intron | 35.0% | |
| ACTTCAGTCATCTATACCTT+CGG | - | chr6_4:54554416-54554435 | None:intergenic | 35.0% | |
| CCAACTAGCTCAATTCTGTA+AGG | - | chr6_4:54553596-54553615 | None:intergenic | 40.0% | |
| CCTTACAGAATTGAGCTAGT+TGG | + | chr6_4:54553593-54553612 | Msa0991080:CDS | 40.0% | |
| GGAGAGCTATAATGACATGA+AGG | + | chr6_4:54553757-54553776 | Msa0991080:intron | 40.0% | |
| !!! | GTTGCTCCTGTTTTTACCTT+TGG | - | chr6_4:54553900-54553919 | None:intergenic | 40.0% |
| !! | CGTTTTGGCCAAAGATAATC+AGG | + | chr6_4:54554002-54554021 | Msa0991080:intron | 40.0% |
| ACTTACGGCCTGATTATCTT+TGG | - | chr6_4:54554013-54554032 | None:intergenic | 40.0% | |
| GAATGTTTAACAGCCTCTCA+GGG | - | chr6_4:54554355-54554374 | None:intergenic | 40.0% | |
| TGAATGTTTAACAGCCTCTC+AGG | - | chr6_4:54554356-54554375 | None:intergenic | 40.0% | |
| CTCTATTGAATCTGCAGAAG+CGG | + | chr6_4:54554508-54554527 | Msa0991080:CDS | 40.0% | |
| ! | TTGTAGCTCTGCTTCTGTTA+GGG | - | chr6_4:54554541-54554560 | None:intergenic | 40.0% |
| CCAACTAGCTCAATTCTGTA+AGG | - | chr6_4:54553596-54553615 | None:intergenic | 40.0% | |
| CCTTACAGAATTGAGCTAGT+TGG | + | chr6_4:54553593-54553612 | Msa0991080:CDS | 40.0% | |
| GGAGAGCTATAATGACATGA+AGG | + | chr6_4:54553757-54553776 | Msa0991080:intron | 40.0% | |
| !!! | GTTGCTCCTGTTTTTACCTT+TGG | - | chr6_4:54553900-54553919 | None:intergenic | 40.0% |
| !! | CGTTTTGGCCAAAGATAATC+AGG | + | chr6_4:54554002-54554021 | Msa0991080:intron | 40.0% |
| ACTTACGGCCTGATTATCTT+TGG | - | chr6_4:54554013-54554032 | None:intergenic | 40.0% | |
| GAATGTTTAACAGCCTCTCA+GGG | - | chr6_4:54554355-54554374 | None:intergenic | 40.0% | |
| TGAATGTTTAACAGCCTCTC+AGG | - | chr6_4:54554356-54554375 | None:intergenic | 40.0% | |
| CTCTATTGAATCTGCAGAAG+CGG | + | chr6_4:54554508-54554527 | Msa0991080:CDS | 40.0% | |
| ! | TTGTAGCTCTGCTTCTGTTA+GGG | - | chr6_4:54554541-54554560 | None:intergenic | 40.0% |
| ! | CAGAATTGAGCTAGTTGGTG+TGG | + | chr6_4:54553598-54553617 | Msa0991080:CDS | 45.0% |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | + | chr6_4:54553608-54553627 | Msa0991080:CDS | 45.0% |
| TAATGACATGAAGGGCAGTG+AGG | + | chr6_4:54553766-54553785 | Msa0991080:intron | 45.0% | |
| AATGACATGAAGGGCAGTGA+GGG | + | chr6_4:54553767-54553786 | Msa0991080:intron | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | + | chr6_4:54553844-54553863 | Msa0991080:CDS | 45.0% |
| TATTGCACAGATGCTGTTGG+TGG | + | chr6_4:54553870-54553889 | Msa0991080:CDS | 45.0% | |
| GGTCCACCAAAGGTAAAAAC+AGG | + | chr6_4:54553891-54553910 | Msa0991080:intron | 45.0% | |
| !!! | GCTCCTGTTTTTACCTTTGG+TGG | - | chr6_4:54553897-54553916 | None:intergenic | 45.0% |
| TATAAACTTGGGTCTGCAGC+AGG | + | chr6_4:54554436-54554455 | Msa0991080:intron | 45.0% | |
| CGCTTCTGCAGATTCAATAG+AGG | - | chr6_4:54554510-54554529 | None:intergenic | 45.0% | |
| ! | CTTGTAGCTCTGCTTCTGTT+AGG | - | chr6_4:54554542-54554561 | None:intergenic | 45.0% |
| AGTACTGCTTCAAGAAGTCG+AGG | + | chr6_4:54554560-54554579 | Msa0991080:CDS | 45.0% | |
| GGAAGAGAAGAGTTGTTAGC+TGG | + | chr6_4:54554581-54554600 | Msa0991080:CDS | 45.0% | |
| ! | CAGAATTGAGCTAGTTGGTG+TGG | + | chr6_4:54553598-54553617 | Msa0991080:CDS | 45.0% |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | + | chr6_4:54553608-54553627 | Msa0991080:CDS | 45.0% |
| TAATGACATGAAGGGCAGTG+AGG | + | chr6_4:54553766-54553785 | Msa0991080:intron | 45.0% | |
| AATGACATGAAGGGCAGTGA+GGG | + | chr6_4:54553767-54553786 | Msa0991080:intron | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | + | chr6_4:54553844-54553863 | Msa0991080:CDS | 45.0% |
| TATTGCACAGATGCTGTTGG+TGG | + | chr6_4:54553870-54553889 | Msa0991080:CDS | 45.0% | |
| GGTCCACCAAAGGTAAAAAC+AGG | + | chr6_4:54553891-54553910 | Msa0991080:intron | 45.0% | |
| !!! | GCTCCTGTTTTTACCTTTGG+TGG | - | chr6_4:54553897-54553916 | None:intergenic | 45.0% |
| TATAAACTTGGGTCTGCAGC+AGG | + | chr6_4:54554436-54554455 | Msa0991080:intron | 45.0% | |
| CGCTTCTGCAGATTCAATAG+AGG | - | chr6_4:54554510-54554529 | None:intergenic | 45.0% | |
| ! | CTTGTAGCTCTGCTTCTGTT+AGG | - | chr6_4:54554542-54554561 | None:intergenic | 45.0% |
| AGTACTGCTTCAAGAAGTCG+AGG | + | chr6_4:54554560-54554579 | Msa0991080:CDS | 45.0% | |
| GGAAGAGAAGAGTTGTTAGC+TGG | + | chr6_4:54554581-54554600 | Msa0991080:CDS | 45.0% | |
| CGCTATTGCACAGATGCTGT+TGG | + | chr6_4:54553867-54553886 | Msa0991080:CDS | 50.0% | |
| CACCATGTATCAACCCTGAG+AGG | + | chr6_4:54554339-54554358 | Msa0991080:intron | 50.0% | |
| !! | AGCCTCTCAGGGTTGATACA+TGG | - | chr6_4:54554344-54554363 | None:intergenic | 50.0% |
| CGCTATTGCACAGATGCTGT+TGG | + | chr6_4:54553867-54553886 | Msa0991080:CDS | 50.0% | |
| CACCATGTATCAACCCTGAG+AGG | + | chr6_4:54554339-54554358 | Msa0991080:intron | 50.0% | |
| !! | AGCCTCTCAGGGTTGATACA+TGG | - | chr6_4:54554344-54554363 | None:intergenic | 50.0% |
| !! | TGCTGTTGGTGGTCCACCAA+AGG | + | chr6_4:54553881-54553900 | Msa0991080:CDS | 55.0% |
| !! | TGCTGTTGGTGGTCCACCAA+AGG | + | chr6_4:54553881-54553900 | Msa0991080:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 54553473 | 54554613 | 54553473 | ID=Msa0991080;Name=Msa0991080 |
| chr6_4 | mRNA | 54553473 | 54554613 | 54553473 | ID=Msa0991080-mRNA-1;Parent=Msa0991080;Name=Msa0991080-mRNA-1;_AED=0.22;_eAED=0.55;_QI=0|0|0|0.66|1|1|3|0|142 |
| chr6_4 | exon | 54553473 | 54553657 | 54553473 | ID=Msa0991080-mRNA-1:exon:11187;Parent=Msa0991080-mRNA-1 |
| chr6_4 | exon | 54553779 | 54553902 | 54553779 | ID=Msa0991080-mRNA-1:exon:11188;Parent=Msa0991080-mRNA-1 |
| chr6_4 | exon | 54554497 | 54554613 | 54554497 | ID=Msa0991080-mRNA-1:exon:11189;Parent=Msa0991080-mRNA-1 |
| chr6_4 | CDS | 54553473 | 54553657 | 54553473 | ID=Msa0991080-mRNA-1:cds;Parent=Msa0991080-mRNA-1 |
| chr6_4 | CDS | 54553779 | 54553902 | 54553779 | ID=Msa0991080-mRNA-1:cds;Parent=Msa0991080-mRNA-1 |
| chr6_4 | CDS | 54554497 | 54554613 | 54554497 | ID=Msa0991080-mRNA-1:cds;Parent=Msa0991080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
