Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918700 | AFK35117.1 | 88.660 | 97 | 3 | 2 | 14 | 103 | 344 | 439 | 1.04e-50 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918700 | sp|Q0WUY1|NADKC_ARATH | 70.513 | 78 | 16 | 1 | 33 | 103 | 376 | 453 | 3.54e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0918700 | 0.806101 | 9.688390e-50 | -8.615850e-47 |
| Msa0073530 | Msa0918700 | 0.815177 | 1.056808e-51 | -8.615850e-47 |
| Msa0115270 | Msa0918700 | 0.804867 | 1.758143e-49 | -8.615850e-47 |
| Msa0116770 | Msa0918700 | 0.803331 | 3.668682e-49 | -8.615850e-47 |
| Msa0610430 | Msa0918700 | 0.800662 | 1.297665e-48 | -8.615850e-47 |
| Msa0663240 | Msa0918700 | 0.809919 | 1.491653e-50 | -8.615850e-47 |
| Msa0688480 | Msa0918700 | 0.810669 | 1.027412e-50 | -8.615850e-47 |
| Msa0731550 | Msa0918700 | 0.832766 | 7.837865e-56 | -8.615850e-47 |
| Msa0743720 | Msa0918700 | 0.830614 | 2.660017e-55 | -8.615850e-47 |
| Msa0766630 | Msa0918700 | 0.808026 | 3.790214e-50 | -8.615850e-47 |
| Msa0153910 | Msa0918700 | 0.805018 | 1.634708e-49 | -8.615850e-47 |
| Msa0157290 | Msa0918700 | 0.805714 | 1.168346e-49 | -8.615850e-47 |
| Msa0165210 | Msa0918700 | 0.801474 | 8.851039e-49 | -8.615850e-47 |
| Msa0165220 | Msa0918700 | 0.803521 | 3.350603e-49 | -8.615850e-47 |
| Msa0175740 | Msa0918700 | 0.811801 | 5.838730e-51 | -8.615850e-47 |
| Msa0178960 | Msa0918700 | 0.802629 | 5.124349e-49 | -8.615850e-47 |
| Msa0215320 | Msa0918700 | -0.806150 | 9.458119e-50 | -8.615850e-47 |
| Msa0223260 | Msa0918700 | 0.808337 | 3.254162e-50 | -8.615850e-47 |
| Msa0233300 | Msa0918700 | 0.803136 | 4.025965e-49 | -8.615850e-47 |
| Msa0401310 | Msa0918700 | 0.852123 | 5.675144e-61 | -8.615850e-47 |
| Msa0408110 | Msa0918700 | 0.869859 | 2.256853e-66 | -8.615850e-47 |
| Msa0416650 | Msa0918700 | 0.822715 | 2.042682e-53 | -8.615850e-47 |
| Msa0288100 | Msa0918700 | 0.812238 | 4.686988e-51 | -8.615850e-47 |
| Msa0344830 | Msa0918700 | 0.804310 | 2.297138e-49 | -8.615850e-47 |
| Msa0344910 | Msa0918700 | 0.803562 | 3.285064e-49 | -8.615850e-47 |
| Msa0344980 | Msa0918700 | 0.804537 | 2.060075e-49 | -8.615850e-47 |
| Msa0350990 | Msa0918700 | 0.804263 | 2.349170e-49 | -8.615850e-47 |
| Msa0351030 | Msa0918700 | 0.806254 | 8.995211e-50 | -8.615850e-47 |
| Msa0512750 | Msa0918700 | 0.804993 | 1.654257e-49 | -8.615850e-47 |
| Msa0562440 | Msa0918700 | 0.831370 | 1.734750e-55 | -8.615850e-47 |
| Msa0861130 | Msa0918700 | 0.800722 | 1.261036e-48 | -8.615850e-47 |
| Msa0880140 | Msa0918700 | 0.802796 | 4.732814e-49 | -8.615850e-47 |
| Msa0907260 | Msa0918700 | 0.814039 | 1.887219e-51 | -8.615850e-47 |
| Msa0918700 | Msa0956270 | 0.803233 | 3.843202e-49 | -8.615850e-47 |
| Msa0918700 | Msa0975220 | 0.806885 | 6.617536e-50 | -8.615850e-47 |
| Msa0918700 | Msa0976670 | 0.810852 | 9.379034e-51 | -8.615850e-47 |
| Msa0918700 | Msa0983090 | 0.876609 | 1.218377e-68 | -8.615850e-47 |
| Msa0918700 | Msa0991080 | 0.870282 | 1.641407e-66 | -8.615850e-47 |
| Msa0918700 | Msa1014540 | 0.831722 | 1.420780e-55 | -8.615850e-47 |
| Msa0918700 | Msa1059570 | 0.823775 | 1.155058e-53 | -8.615850e-47 |
| Msa0918700 | Msa1075220 | -0.811771 | 5.925782e-51 | -8.615850e-47 |
| Msa0918700 | Msa1082500 | 0.801015 | 1.098849e-48 | -8.615850e-47 |
| Msa0918700 | Msa1111150 | 0.804555 | 2.042497e-49 | -8.615850e-47 |
| Msa0918700 | Msa1156020 | 0.819681 | 1.022208e-52 | -8.615850e-47 |
| Msa0918700 | Msa1162550 | -0.810519 | 1.107100e-50 | -8.615850e-47 |
| Msa0918700 | Msa1174040 | 0.823330 | 1.467885e-53 | -8.615850e-47 |
| Msa0918700 | Msa1226660 | 0.808453 | 3.075059e-50 | -8.615850e-47 |
| Msa0918700 | Msa1233500 | 0.802385 | 5.754158e-49 | -8.615850e-47 |
| Msa0918700 | Msa1233890 | 0.811154 | 8.068940e-51 | -8.615850e-47 |
| Msa0918700 | Msa1244250 | 0.834620 | 2.697745e-56 | -8.615850e-47 |
| Msa0918700 | Msa1249490 | 0.808567 | 2.906966e-50 | -8.615850e-47 |
| Msa0918700 | Msa1273920 | 0.903488 | 3.294546e-79 | -8.615850e-47 |
| Msa0918700 | Msa1284680 | 0.831004 | 2.134078e-55 | -8.615850e-47 |
| Msa0918700 | Msa1348950 | 0.842517 | 2.463789e-58 | -8.615850e-47 |
| Msa0918700 | Msa1362880 | 0.824936 | 6.160041e-54 | -8.615850e-47 |
| Msa0918700 | Msa1366810 | 0.801276 | 9.718532e-49 | -8.615850e-47 |
| Msa0918700 | Msa1403480 | 0.800408 | 1.461445e-48 | -8.615850e-47 |
| Msa0918700 | Msa1411020 | 0.809660 | 1.695731e-50 | -8.615850e-47 |
| Msa0918700 | Msa1420490 | 0.800078 | 1.705712e-48 | -8.615850e-47 |
| Msa0918700 | Msa1424290 | 0.805785 | 1.129030e-49 | -8.615850e-47 |
| Msa0918700 | Msa1434350 | 0.808019 | 3.803481e-50 | -8.615850e-47 |
| Msa0918700 | Msa1439320 | 0.808415 | 3.132937e-50 | -8.615850e-47 |
| Msa0918700 | Msa1440810 | 0.802920 | 4.460837e-49 | -8.615850e-47 |
| Msa0918700 | Msa1451620 | -0.804774 | 1.838469e-49 | -8.615850e-47 |
| Msa0918700 | Msa1466540 | 0.801352 | 9.377433e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918700 | MtrunA17_Chr1g0187021 | 88.660 | 97 | 3 | 2 | 14 | 103 | 344 | 439 | 1.77e-54 | 177 |
| Msa0918700 | MtrunA17_Chr1g0187071 | 71.134 | 97 | 20 | 2 | 14 | 103 | 343 | 438 | 3.66e-39 | 137 |
| Msa0918700 | MtrunA17_Chr1g0187051 | 68.041 | 97 | 13 | 2 | 14 | 103 | 339 | 424 | 6.63e-38 | 134 |
| Msa0918700 | MtrunA17_Chr7g0260781 | 69.444 | 72 | 15 | 1 | 39 | 103 | 223 | 294 | 1.48e-28 | 107 |
| Msa0918700 | MtrunA17_Chr1g0184551 | 61.628 | 86 | 24 | 2 | 25 | 103 | 347 | 430 | 5.59e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918700 | AT1G04280.2 | 70.513 | 78 | 16 | 1 | 33 | 103 | 322 | 399 | 1.86e-32 | 119 |
| Msa0918700 | AT1G04280.1 | 70.513 | 78 | 16 | 1 | 33 | 103 | 376 | 453 | 3.60e-32 | 119 |
| Msa0918700 | AT1G06750.2 | 55.556 | 117 | 35 | 5 | 14 | 123 | 349 | 455 | 3.19e-30 | 113 |
| Msa0918700 | AT1G06750.3 | 55.556 | 117 | 35 | 5 | 14 | 123 | 342 | 448 | 3.32e-30 | 113 |
| Msa0918700 | AT1G06750.1 | 55.556 | 117 | 35 | 5 | 14 | 123 | 342 | 448 | 3.32e-30 | 113 |
| Msa0918700 | AT2G30630.1 | 59.794 | 97 | 25 | 3 | 14 | 103 | 356 | 445 | 1.76e-29 | 111 |
| Msa0918700 | AT2G30630.2 | 59.794 | 97 | 25 | 3 | 14 | 103 | 377 | 466 | 1.76e-29 | 111 |
Find 22 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACAAGTTTGCAATATTT+TGG | 0.119289 | 6_2:-47298241 | None:intergenic |
| CTTGTAGCTCTGCTTCTGTT+AGG | 0.288048 | 6_2:-47298932 | None:intergenic |
| GGATATCTTGCAGTTATTAG+AGG | 0.406489 | 6_2:+47298036 | Msa0918700:CDS |
| TTGCAGTTATTAGAGGCATT+AGG | 0.422529 | 6_2:+47298043 | Msa0918700:CDS |
| TTGTAGCTCTGCTTCTGTTA+GGG | 0.423721 | 6_2:-47298931 | None:intergenic |
| CAACAAGAGGAAAATTCTAC+AGG | 0.441415 | 6_2:+47297958 | Msa0918700:CDS |
| GCAAACTTGTTGACAGTGCT+AGG | 0.509508 | 6_2:+47298251 | Msa0918700:CDS |
| CTAGTTGGTGTGGTTTGTGA+TGG | 0.513280 | 6_2:+47298015 | Msa0918700:CDS |
| CTATACAAAGCAAGTGAATG+AGG | 0.513355 | 6_2:+47297921 | Msa0918700:CDS |
| CCAACTAGCTCAATTCTGTA+AGG | 0.525410 | 6_2:-47298000 | None:intergenic |
| CCTTACAGAATTGAGCTAGT+TGG | 0.526663 | 6_2:+47298000 | Msa0918700:CDS |
| CAGAATTGAGCTAGTTGGTG+TGG | 0.527716 | 6_2:+47298005 | Msa0918700:CDS |
| CTCTATTGCACAGATGCTGT+TGG | 0.532305 | 6_2:+47298274 | Msa0918700:CDS |
| TATTGCACAGATGCTGTTGG+TGG | 0.536088 | 6_2:+47298277 | Msa0918700:CDS |
| TGCTGTTGGTGGTCCACCAA+AGG | 0.575982 | 6_2:+47298288 | Msa0918700:CDS |
| TATGACATGAAGGGCAGTGA+GGG | 0.577678 | 6_2:+47298174 | Msa0918700:intron |
| AGAAGAAGAACATCAACAAG+AGG | 0.597156 | 6_2:+47297945 | Msa0918700:CDS |
| AACAAGAGGAAAATTCTACA+GGG | 0.606029 | 6_2:+47297959 | Msa0918700:CDS |
| TATACAAAGCAAGTGAATGA+GGG | 0.610525 | 6_2:+47297922 | Msa0918700:CDS |
| AGTACTGCTTCAAGAAGTCG+AGG | 0.646449 | 6_2:+47298953 | Msa0918700:CDS |
| TTATGACATGAAGGGCAGTG+AGG | 0.703176 | 6_2:+47298173 | Msa0918700:intron |
| ACAAGAGGAAAATTCTACAG+GGG | 0.709176 | 6_2:+47297960 | Msa0918700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTACTATATTAATATACTT+TGG | + | chr6_2:47298084-47298103 | Msa0918700:intron | 15.0% |
| !!! | TATAATTAACATTTTCCTTT+TGG | + | chr6_2:47298131-47298150 | Msa0918700:intron | 15.0% |
| !!! | CTTTTCATTATTGATTTATT+GGG | + | chr6_2:47298550-47298569 | Msa0918700:intron | 15.0% |
| !!! | TTTTCATTATTGATTTATTG+GGG | + | chr6_2:47298551-47298570 | Msa0918700:intron | 15.0% |
| !!! | AATGTAAAACATTTTGAATA+AGG | - | chr6_2:47298625-47298644 | None:intergenic | 15.0% |
| !! | TCTACTATATTAATATACTT+TGG | + | chr6_2:47298084-47298103 | Msa0918700:intron | 15.0% |
| !!! | TATAATTAACATTTTCCTTT+TGG | + | chr6_2:47298131-47298150 | Msa0918700:intron | 15.0% |
| !!! | CTTTTCATTATTGATTTATT+GGG | + | chr6_2:47298550-47298569 | Msa0918700:intron | 15.0% |
| !!! | TTTTCATTATTGATTTATTG+GGG | + | chr6_2:47298551-47298570 | Msa0918700:intron | 15.0% |
| !!! | AATGTAAAACATTTTGAATA+AGG | - | chr6_2:47298625-47298644 | None:intergenic | 15.0% |
| !! | ACTATATTAATATACTTTGG+TGG | + | chr6_2:47298087-47298106 | Msa0918700:intron | 20.0% |
| !!! | TTGTACATTTTTATTTCACA+TGG | + | chr6_2:47298465-47298484 | Msa0918700:intron | 20.0% |
| !! | CCAATAAATCAATAATGAAA+AGG | - | chr6_2:47298552-47298571 | None:intergenic | 20.0% |
| !!! | CCTTTTCATTATTGATTTAT+TGG | + | chr6_2:47298549-47298568 | Msa0918700:intron | 20.0% |
| !!! | TAAAACATTTTGAATAAGGT+TGG | - | chr6_2:47298621-47298640 | None:intergenic | 20.0% |
| !! | ATAGAGGTAAAATTATTCTA+TGG | - | chr6_2:47298887-47298906 | None:intergenic | 20.0% |
| !! | ACTATATTAATATACTTTGG+TGG | + | chr6_2:47298087-47298106 | Msa0918700:intron | 20.0% |
| !!! | TTGTACATTTTTATTTCACA+TGG | + | chr6_2:47298465-47298484 | Msa0918700:intron | 20.0% |
| !! | CCAATAAATCAATAATGAAA+AGG | - | chr6_2:47298552-47298571 | None:intergenic | 20.0% |
| !!! | CCTTTTCATTATTGATTTAT+TGG | + | chr6_2:47298549-47298568 | Msa0918700:intron | 20.0% |
| !!! | TAAAACATTTTGAATAAGGT+TGG | - | chr6_2:47298621-47298640 | None:intergenic | 20.0% |
| !! | ATAGAGGTAAAATTATTCTA+TGG | - | chr6_2:47298887-47298906 | None:intergenic | 20.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | + | chr6_2:47297895-47297914 | Msa0918700:CDS | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | + | chr6_2:47298143-47298162 | Msa0918700:intron | 25.0% |
| !! | TCAACAAGTTTGCAATATTT+TGG | - | chr6_2:47298244-47298263 | None:intergenic | 25.0% |
| ! | GAATAATATCTTCTGACTTA+CGG | - | chr6_2:47298435-47298454 | None:intergenic | 25.0% |
| ! | AATGAAATATTTCTTTCCGA+AGG | + | chr6_2:47298790-47298809 | Msa0918700:intron | 25.0% |
| ! | ATGACTGAAGTTATAAACTT+GGG | + | chr6_2:47298818-47298837 | Msa0918700:intron | 25.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | + | chr6_2:47297895-47297914 | Msa0918700:CDS | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | + | chr6_2:47298143-47298162 | Msa0918700:intron | 25.0% |
| !! | TCAACAAGTTTGCAATATTT+TGG | - | chr6_2:47298244-47298263 | None:intergenic | 25.0% |
| ! | GAATAATATCTTCTGACTTA+CGG | - | chr6_2:47298435-47298454 | None:intergenic | 25.0% |
| ! | AATGAAATATTTCTTTCCGA+AGG | + | chr6_2:47298790-47298809 | Msa0918700:intron | 25.0% |
| ! | ATGACTGAAGTTATAAACTT+GGG | + | chr6_2:47298818-47298837 | Msa0918700:intron | 25.0% |
| TATACAAAGCAAGTGAATGA+GGG | + | chr6_2:47297922-47297941 | Msa0918700:CDS | 30.0% | |
| AACAAGAGGAAAATTCTACA+GGG | + | chr6_2:47297959-47297978 | Msa0918700:CDS | 30.0% | |
| !!! | GGTGTGATTTTTTGTTATGA+TGG | + | chr6_2:47298108-47298127 | Msa0918700:intron | 30.0% |
| TCTCCTGTTAAAATTCCAAA+AGG | - | chr6_2:47298149-47298168 | None:intergenic | 30.0% | |
| GAGAGTTATTATGACATGAA+GGG | + | chr6_2:47298165-47298184 | Msa0918700:intron | 30.0% | |
| ! | GTTTTGTCCTAAAATCGTTT+TGG | + | chr6_2:47298394-47298413 | Msa0918700:intron | 30.0% |
| CATTTGTTTGACAAGAACTT+TGG | - | chr6_2:47298503-47298522 | None:intergenic | 30.0% | |
| CTTATTAGCTCAGATATCAA+AGG | - | chr6_2:47298650-47298669 | None:intergenic | 30.0% | |
| GATGACTGAAGTTATAAACT+TGG | + | chr6_2:47298817-47298836 | Msa0918700:intron | 30.0% | |
| TATACAAAGCAAGTGAATGA+GGG | + | chr6_2:47297922-47297941 | Msa0918700:CDS | 30.0% | |
| AACAAGAGGAAAATTCTACA+GGG | + | chr6_2:47297959-47297978 | Msa0918700:CDS | 30.0% | |
| !!! | GGTGTGATTTTTTGTTATGA+TGG | + | chr6_2:47298108-47298127 | Msa0918700:intron | 30.0% |
| TCTCCTGTTAAAATTCCAAA+AGG | - | chr6_2:47298149-47298168 | None:intergenic | 30.0% | |
| GAGAGTTATTATGACATGAA+GGG | + | chr6_2:47298165-47298184 | Msa0918700:intron | 30.0% | |
| ! | GTTTTGTCCTAAAATCGTTT+TGG | + | chr6_2:47298394-47298413 | Msa0918700:intron | 30.0% |
| CATTTGTTTGACAAGAACTT+TGG | - | chr6_2:47298503-47298522 | None:intergenic | 30.0% | |
| CTTATTAGCTCAGATATCAA+AGG | - | chr6_2:47298650-47298669 | None:intergenic | 30.0% | |
| GATGACTGAAGTTATAAACT+TGG | + | chr6_2:47298817-47298836 | Msa0918700:intron | 30.0% | |
| CTATACAAAGCAAGTGAATG+AGG | + | chr6_2:47297921-47297940 | Msa0918700:CDS | 35.0% | |
| AGAAGAAGAACATCAACAAG+AGG | + | chr6_2:47297945-47297964 | Msa0918700:CDS | 35.0% | |
| CAACAAGAGGAAAATTCTAC+AGG | + | chr6_2:47297958-47297977 | Msa0918700:CDS | 35.0% | |
| ACAAGAGGAAAATTCTACAG+GGG | + | chr6_2:47297960-47297979 | Msa0918700:CDS | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | + | chr6_2:47298036-47298055 | Msa0918700:CDS | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | + | chr6_2:47298043-47298062 | Msa0918700:CDS | 35.0% |
| GGAGAGTTATTATGACATGA+AGG | + | chr6_2:47298164-47298183 | Msa0918700:intron | 35.0% | |
| !!! | GTTGCTCTTGTTTTTACCTT+TGG | - | chr6_2:47298307-47298326 | None:intergenic | 35.0% |
| ! | TCTTTGGCCAAAACGATTTT+AGG | - | chr6_2:47298404-47298423 | None:intergenic | 35.0% |
| GGGAAATTATTCTTTGTGCT+AGG | + | chr6_2:47298571-47298590 | Msa0918700:intron | 35.0% | |
| GAATGTTTAACAGTCTCTCA+GGG | - | chr6_2:47298742-47298761 | None:intergenic | 35.0% | |
| TGAATGTTTAACAGTCTCTC+AGG | - | chr6_2:47298743-47298762 | None:intergenic | 35.0% | |
| ACTTCAGTCATCTATACCTT+CGG | - | chr6_2:47298809-47298828 | None:intergenic | 35.0% | |
| CTATACAAAGCAAGTGAATG+AGG | + | chr6_2:47297921-47297940 | Msa0918700:CDS | 35.0% | |
| AGAAGAAGAACATCAACAAG+AGG | + | chr6_2:47297945-47297964 | Msa0918700:CDS | 35.0% | |
| CAACAAGAGGAAAATTCTAC+AGG | + | chr6_2:47297958-47297977 | Msa0918700:CDS | 35.0% | |
| ACAAGAGGAAAATTCTACAG+GGG | + | chr6_2:47297960-47297979 | Msa0918700:CDS | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | + | chr6_2:47298036-47298055 | Msa0918700:CDS | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | + | chr6_2:47298043-47298062 | Msa0918700:CDS | 35.0% |
| GGAGAGTTATTATGACATGA+AGG | + | chr6_2:47298164-47298183 | Msa0918700:intron | 35.0% | |
| !!! | GTTGCTCTTGTTTTTACCTT+TGG | - | chr6_2:47298307-47298326 | None:intergenic | 35.0% |
| ! | TCTTTGGCCAAAACGATTTT+AGG | - | chr6_2:47298404-47298423 | None:intergenic | 35.0% |
| GGGAAATTATTCTTTGTGCT+AGG | + | chr6_2:47298571-47298590 | Msa0918700:intron | 35.0% | |
| GAATGTTTAACAGTCTCTCA+GGG | - | chr6_2:47298742-47298761 | None:intergenic | 35.0% | |
| TGAATGTTTAACAGTCTCTC+AGG | - | chr6_2:47298743-47298762 | None:intergenic | 35.0% | |
| ACTTCAGTCATCTATACCTT+CGG | - | chr6_2:47298809-47298828 | None:intergenic | 35.0% | |
| CCAACTAGCTCAATTCTGTA+AGG | - | chr6_2:47298003-47298022 | None:intergenic | 40.0% | |
| CCTTACAGAATTGAGCTAGT+TGG | + | chr6_2:47298000-47298019 | Msa0918700:CDS | 40.0% | |
| !!! | GCTCTTGTTTTTACCTTTGG+TGG | - | chr6_2:47298304-47298323 | None:intergenic | 40.0% |
| !! | CGTTTTGGCCAAAGATAATC+AGG | + | chr6_2:47298409-47298428 | Msa0918700:intron | 40.0% |
| ACTTACGGCCTGATTATCTT+TGG | - | chr6_2:47298420-47298439 | None:intergenic | 40.0% | |
| CTCTATTGAATCTGCAGAAG+CGG | + | chr6_2:47298901-47298920 | Msa0918700:intron | 40.0% | |
| ! | TTGTAGCTCTGCTTCTGTTA+GGG | - | chr6_2:47298934-47298953 | None:intergenic | 40.0% |
| CCAACTAGCTCAATTCTGTA+AGG | - | chr6_2:47298003-47298022 | None:intergenic | 40.0% | |
| CCTTACAGAATTGAGCTAGT+TGG | + | chr6_2:47298000-47298019 | Msa0918700:CDS | 40.0% | |
| !!! | GCTCTTGTTTTTACCTTTGG+TGG | - | chr6_2:47298304-47298323 | None:intergenic | 40.0% |
| !! | CGTTTTGGCCAAAGATAATC+AGG | + | chr6_2:47298409-47298428 | Msa0918700:intron | 40.0% |
| ACTTACGGCCTGATTATCTT+TGG | - | chr6_2:47298420-47298439 | None:intergenic | 40.0% | |
| CTCTATTGAATCTGCAGAAG+CGG | + | chr6_2:47298901-47298920 | Msa0918700:intron | 40.0% | |
| ! | TTGTAGCTCTGCTTCTGTTA+GGG | - | chr6_2:47298934-47298953 | None:intergenic | 40.0% |
| ! | CAGAATTGAGCTAGTTGGTG+TGG | + | chr6_2:47298005-47298024 | Msa0918700:CDS | 45.0% |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | + | chr6_2:47298015-47298034 | Msa0918700:CDS | 45.0% |
| TTATGACATGAAGGGCAGTG+AGG | + | chr6_2:47298173-47298192 | Msa0918700:intron | 45.0% | |
| TATGACATGAAGGGCAGTGA+GGG | + | chr6_2:47298174-47298193 | Msa0918700:intron | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | + | chr6_2:47298251-47298270 | Msa0918700:CDS | 45.0% |
| CTCTATTGCACAGATGCTGT+TGG | + | chr6_2:47298274-47298293 | Msa0918700:CDS | 45.0% | |
| TATTGCACAGATGCTGTTGG+TGG | + | chr6_2:47298277-47298296 | Msa0918700:CDS | 45.0% | |
| !! | AGTCTCTCAGGGTTGATACA+TGG | - | chr6_2:47298731-47298750 | None:intergenic | 45.0% |
| TATAAACTTGGGTCTGCAGC+AGG | + | chr6_2:47298829-47298848 | Msa0918700:intron | 45.0% | |
| CGCTTCTGCAGATTCAATAG+AGG | - | chr6_2:47298903-47298922 | None:intergenic | 45.0% | |
| ! | CTTGTAGCTCTGCTTCTGTT+AGG | - | chr6_2:47298935-47298954 | None:intergenic | 45.0% |
| AGTACTGCTTCAAGAAGTCG+AGG | + | chr6_2:47298953-47298972 | Msa0918700:CDS | 45.0% | |
| ! | CAGAATTGAGCTAGTTGGTG+TGG | + | chr6_2:47298005-47298024 | Msa0918700:CDS | 45.0% |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | + | chr6_2:47298015-47298034 | Msa0918700:CDS | 45.0% |
| TTATGACATGAAGGGCAGTG+AGG | + | chr6_2:47298173-47298192 | Msa0918700:intron | 45.0% | |
| TATGACATGAAGGGCAGTGA+GGG | + | chr6_2:47298174-47298193 | Msa0918700:intron | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | + | chr6_2:47298251-47298270 | Msa0918700:CDS | 45.0% |
| CTCTATTGCACAGATGCTGT+TGG | + | chr6_2:47298274-47298293 | Msa0918700:CDS | 45.0% | |
| TATTGCACAGATGCTGTTGG+TGG | + | chr6_2:47298277-47298296 | Msa0918700:CDS | 45.0% | |
| !! | AGTCTCTCAGGGTTGATACA+TGG | - | chr6_2:47298731-47298750 | None:intergenic | 45.0% |
| TATAAACTTGGGTCTGCAGC+AGG | + | chr6_2:47298829-47298848 | Msa0918700:intron | 45.0% | |
| CGCTTCTGCAGATTCAATAG+AGG | - | chr6_2:47298903-47298922 | None:intergenic | 45.0% | |
| ! | CTTGTAGCTCTGCTTCTGTT+AGG | - | chr6_2:47298935-47298954 | None:intergenic | 45.0% |
| AGTACTGCTTCAAGAAGTCG+AGG | + | chr6_2:47298953-47298972 | Msa0918700:CDS | 45.0% | |
| !! | TGCTGTTGGTGGTCCACCAA+AGG | + | chr6_2:47298288-47298307 | Msa0918700:CDS | 55.0% |
| !! | TGCTGTTGGTGGTCCACCAA+AGG | + | chr6_2:47298288-47298307 | Msa0918700:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 47297880 | 47298992 | 47297880 | ID=Msa0918700;Name=Msa0918700 |
| chr6_2 | mRNA | 47297880 | 47298992 | 47297880 | ID=Msa0918700-mRNA-1;Parent=Msa0918700;Name=Msa0918700-mRNA-1;_AED=0.19;_eAED=0.53;_QI=0|0|0|0.66|0.5|0.66|3|0|127 |
| chr6_2 | exon | 47297880 | 47298064 | 47297880 | ID=Msa0918700-mRNA-1:exon:7320;Parent=Msa0918700-mRNA-1 |
| chr6_2 | exon | 47298186 | 47298309 | 47298186 | ID=Msa0918700-mRNA-1:exon:7321;Parent=Msa0918700-mRNA-1 |
| chr6_2 | exon | 47298918 | 47298992 | 47298918 | ID=Msa0918700-mRNA-1:exon:7322;Parent=Msa0918700-mRNA-1 |
| chr6_2 | CDS | 47297880 | 47298064 | 47297880 | ID=Msa0918700-mRNA-1:cds;Parent=Msa0918700-mRNA-1 |
| chr6_2 | CDS | 47298186 | 47298309 | 47298186 | ID=Msa0918700-mRNA-1:cds;Parent=Msa0918700-mRNA-1 |
| chr6_2 | CDS | 47298918 | 47298992 | 47298918 | ID=Msa0918700-mRNA-1:cds;Parent=Msa0918700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
