Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401310 | AFK35117.1 | 88.660 | 97 | 3 | 2 | 14 | 103 | 344 | 439 | 1.34e-50 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401310 | sp|Q0WUY1|NADKC_ARATH | 71.795 | 78 | 15 | 1 | 33 | 103 | 376 | 453 | 1.31e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401310 | I3S4C5 | 88.660 | 97 | 3 | 2 | 14 | 103 | 344 | 439 | 6.41e-51 | 177 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0116770 | Msa0401310 | 0.833013 | 6.805908e-56 | -8.615850e-47 |
| Msa0165210 | Msa0401310 | 0.829816 | 4.165327e-55 | -8.615850e-47 |
| Msa0165220 | Msa0401310 | 0.813648 | 2.301824e-51 | -8.615850e-47 |
| Msa0215320 | Msa0401310 | -0.804616 | 1.983165e-49 | -8.615850e-47 |
| Msa0233300 | Msa0401310 | 0.811514 | 6.741285e-51 | -8.615850e-47 |
| Msa0401310 | Msa0408110 | 0.894101 | 3.384159e-75 | -8.615850e-47 |
| Msa0401310 | Msa0424320 | 0.811549 | 6.623242e-51 | -8.615850e-47 |
| Msa0401310 | Msa0523940 | 0.807678 | 4.495468e-50 | -8.615850e-47 |
| Msa0401310 | Msa0562440 | 0.814288 | 1.662811e-51 | -8.615850e-47 |
| Msa0401310 | Msa0663380 | 0.811443 | 6.982919e-51 | -8.615850e-47 |
| Msa0401310 | Msa0701010 | 0.805257 | 1.456446e-49 | -8.615850e-47 |
| Msa0401310 | Msa0731550 | 0.825290 | 5.080202e-54 | -8.615850e-47 |
| Msa0401310 | Msa0731940 | 0.804640 | 1.960612e-49 | -8.615850e-47 |
| Msa0401310 | Msa0766630 | 0.805876 | 1.080329e-49 | -8.615850e-47 |
| Msa0401310 | Msa0797170 | 0.813130 | 2.991419e-51 | -8.615850e-47 |
| Msa0401310 | Msa0849030 | 0.804178 | 2.447353e-49 | -8.615850e-47 |
| Msa0401310 | Msa0877250 | 0.815947 | 7.119875e-52 | -8.615850e-47 |
| Msa0401310 | Msa0884470 | 0.801760 | 7.733774e-49 | -8.615850e-47 |
| Msa0401310 | Msa0918700 | 0.852123 | 5.675144e-61 | -8.615850e-47 |
| Msa0401310 | Msa0983090 | 0.841661 | 4.151173e-58 | -8.615850e-47 |
| Msa0401310 | Msa0991080 | 0.866558 | 2.612015e-65 | -8.615850e-47 |
| Msa0401310 | Msa1000900 | 0.801543 | 8.569009e-49 | -8.615850e-47 |
| Msa0401310 | Msa1014540 | 0.841229 | 5.394448e-58 | -8.615850e-47 |
| Msa0401310 | Msa1075220 | -0.809165 | 2.164831e-50 | -8.615850e-47 |
| Msa0401310 | Msa1082500 | 0.806775 | 6.984435e-50 | -8.615850e-47 |
| Msa0401310 | Msa1121490 | 0.804982 | 1.662794e-49 | -8.615850e-47 |
| Msa0401310 | Msa1162550 | -0.810321 | 1.221414e-50 | -8.615850e-47 |
| Msa0401310 | Msa1244250 | 0.806124 | 9.580736e-50 | -8.615850e-47 |
| Msa0401310 | Msa1273920 | 0.854669 | 1.055558e-61 | -8.615850e-47 |
| Msa0401310 | Msa1277660 | 0.810493 | 1.121313e-50 | -8.615850e-47 |
| Msa0401310 | Msa1284680 | 0.859846 | 3.117095e-63 | -8.615850e-47 |
| Msa0401310 | Msa1466540 | 0.803464 | 3.443018e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401310 | MtrunA17_Chr1g0187021 | 88.660 | 97 | 3 | 2 | 14 | 103 | 344 | 439 | 2.23e-54 | 177 |
| Msa0401310 | MtrunA17_Chr1g0187071 | 72.165 | 97 | 19 | 2 | 14 | 103 | 343 | 438 | 1.57e-39 | 138 |
| Msa0401310 | MtrunA17_Chr1g0187051 | 69.072 | 97 | 12 | 2 | 14 | 103 | 339 | 424 | 2.18e-38 | 135 |
| Msa0401310 | MtrunA17_Chr7g0260781 | 57.000 | 100 | 29 | 3 | 11 | 103 | 202 | 294 | 4.93e-29 | 108 |
| Msa0401310 | MtrunA17_Chr1g0184551 | 63.953 | 86 | 22 | 2 | 25 | 103 | 347 | 430 | 8.66e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401310 | AT1G04280.2 | 71.795 | 78 | 15 | 1 | 33 | 103 | 322 | 399 | 7.58e-33 | 120 |
| Msa0401310 | AT1G04280.1 | 71.795 | 78 | 15 | 1 | 33 | 103 | 376 | 453 | 1.33e-32 | 120 |
| Msa0401310 | AT1G06750.2 | 55.556 | 117 | 35 | 5 | 14 | 123 | 349 | 455 | 4.13e-30 | 113 |
| Msa0401310 | AT1G06750.3 | 55.556 | 117 | 35 | 5 | 14 | 123 | 342 | 448 | 4.14e-30 | 113 |
| Msa0401310 | AT1G06750.1 | 55.556 | 117 | 35 | 5 | 14 | 123 | 342 | 448 | 4.14e-30 | 113 |
| Msa0401310 | AT2G30630.1 | 59.794 | 97 | 25 | 3 | 14 | 103 | 356 | 445 | 2.23e-29 | 111 |
| Msa0401310 | AT2G30630.2 | 59.794 | 97 | 25 | 3 | 14 | 103 | 377 | 466 | 2.55e-29 | 110 |
Find 22 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACAAGTTTGCAATATTT+TGG | 0.119289 | 3_2:-26824970 | None:intergenic |
| CTTGTAGCTCTGCTTCTGTT+AGG | 0.288048 | 3_2:-26825672 | None:intergenic |
| GGATATCTTGCAGTTATTAG+AGG | 0.406489 | 3_2:+26824765 | Msa0401310:CDS |
| TTGCAGTTATTAGAGGCATT+AGG | 0.422529 | 3_2:+26824772 | Msa0401310:CDS |
| TTGTAGCTCTGCTTCTGTTA+GGG | 0.423721 | 3_2:-26825671 | None:intergenic |
| CAAGAAGAGGAAAATTCTAC+AGG | 0.430874 | 3_2:+26824687 | Msa0401310:CDS |
| GCAAACTTGTTGACAGTGCT+AGG | 0.509508 | 3_2:+26824980 | Msa0401310:CDS |
| CTAGTTGGTGTGGTTTGTGA+TGG | 0.513280 | 3_2:+26824744 | Msa0401310:CDS |
| CTATACAAAGCAAGTGAATG+AGG | 0.513355 | 3_2:+26824650 | Msa0401310:CDS |
| CCAACTAGCTCAATTCTGTA+AGG | 0.525410 | 3_2:-26824729 | None:intergenic |
| CCTTACAGAATTGAGCTAGT+TGG | 0.526663 | 3_2:+26824729 | Msa0401310:CDS |
| CAGAATTGAGCTAGTTGGTG+TGG | 0.527716 | 3_2:+26824734 | Msa0401310:CDS |
| CTCTATTGCACAGATGCTGT+TGG | 0.532305 | 3_2:+26825003 | Msa0401310:CDS |
| TATTGCACAGATGCTGTTGG+TGG | 0.536088 | 3_2:+26825006 | Msa0401310:CDS |
| TGCTGTTGGTGGTCCACCAA+AGG | 0.575982 | 3_2:+26825017 | Msa0401310:CDS |
| AGAAGAAGAACATCAAGAAG+AGG | 0.576728 | 3_2:+26824674 | Msa0401310:CDS |
| TATGACATGAAGGGCAGTGA+GGG | 0.577678 | 3_2:+26824903 | Msa0401310:intron |
| TATACAAAGCAAGTGAATGA+GGG | 0.610525 | 3_2:+26824651 | Msa0401310:CDS |
| AAGAAGAGGAAAATTCTACA+GGG | 0.618161 | 3_2:+26824688 | Msa0401310:CDS |
| AGTACTGCTTCAAGAAGTCG+AGG | 0.646449 | 3_2:+26825693 | Msa0401310:CDS |
| AGAAGAGGAAAATTCTACAG+GGG | 0.696758 | 3_2:+26824689 | Msa0401310:CDS |
| TTATGACATGAAGGGCAGTG+AGG | 0.703176 | 3_2:+26824902 | Msa0401310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAATATATTAATATACTT+TGG | + | chr3_2:26824813-26824832 | Msa0401310:intron | 10.0% |
| !! | TCTAATATATTAATATACTT+TGG | + | chr3_2:26824813-26824832 | Msa0401310:intron | 10.0% |
| !! | AATATATTAATATACTTTGG+TGG | + | chr3_2:26824816-26824835 | Msa0401310:intron | 15.0% |
| !!! | TATAATTAACATTTTCCTTT+TGG | + | chr3_2:26824860-26824879 | Msa0401310:intron | 15.0% |
| !!! | CTTTTCATTATTGATTTAAT+GGG | + | chr3_2:26825297-26825316 | Msa0401310:intron | 15.0% |
| !!! | TTTTCATTATTGATTTAATG+GGG | + | chr3_2:26825298-26825317 | Msa0401310:intron | 15.0% |
| !!! | AATGTAAAACATTTTGAATA+AGG | - | chr3_2:26825372-26825391 | None:intergenic | 15.0% |
| !! | AATATATTAATATACTTTGG+TGG | + | chr3_2:26824816-26824835 | Msa0401310:intron | 15.0% |
| !!! | TATAATTAACATTTTCCTTT+TGG | + | chr3_2:26824860-26824879 | Msa0401310:intron | 15.0% |
| !!! | CTTTTCATTATTGATTTAAT+GGG | + | chr3_2:26825297-26825316 | Msa0401310:intron | 15.0% |
| !!! | TTTTCATTATTGATTTAATG+GGG | + | chr3_2:26825298-26825317 | Msa0401310:intron | 15.0% |
| !!! | AATGTAAAACATTTTGAATA+AGG | - | chr3_2:26825372-26825391 | None:intergenic | 15.0% |
| !!! | TTGTACATTTTTATTTCACA+TGG | + | chr3_2:26825194-26825213 | Msa0401310:intron | 20.0% |
| !! | CCATTAAATCAATAATGAAA+AGG | - | chr3_2:26825299-26825318 | None:intergenic | 20.0% |
| !!! | CCTTTTCATTATTGATTTAA+TGG | + | chr3_2:26825296-26825315 | Msa0401310:intron | 20.0% |
| !!! | TAAAACATTTTGAATAAGGT+TGG | - | chr3_2:26825368-26825387 | None:intergenic | 20.0% |
| !! | ATAGAGGTAAAATTATTCTA+TGG | - | chr3_2:26825627-26825646 | None:intergenic | 20.0% |
| !!! | TTGTACATTTTTATTTCACA+TGG | + | chr3_2:26825194-26825213 | Msa0401310:intron | 20.0% |
| !! | CCATTAAATCAATAATGAAA+AGG | - | chr3_2:26825299-26825318 | None:intergenic | 20.0% |
| !!! | CCTTTTCATTATTGATTTAA+TGG | + | chr3_2:26825296-26825315 | Msa0401310:intron | 20.0% |
| !!! | TAAAACATTTTGAATAAGGT+TGG | - | chr3_2:26825368-26825387 | None:intergenic | 20.0% |
| !! | ATAGAGGTAAAATTATTCTA+TGG | - | chr3_2:26825627-26825646 | None:intergenic | 20.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | + | chr3_2:26824624-26824643 | Msa0401310:CDS | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | + | chr3_2:26824872-26824891 | Msa0401310:intron | 25.0% |
| !! | TCAACAAGTTTGCAATATTT+TGG | - | chr3_2:26824973-26824992 | None:intergenic | 25.0% |
| ! | GAATAATATCTTCTGACTTA+CGG | - | chr3_2:26825164-26825183 | None:intergenic | 25.0% |
| ! | AATGAAATATTTCTTTCCGA+AGG | + | chr3_2:26825530-26825549 | Msa0401310:intron | 25.0% |
| ! | ATGACTGAAGTTATAAACTT+GGG | + | chr3_2:26825558-26825577 | Msa0401310:intron | 25.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | + | chr3_2:26824624-26824643 | Msa0401310:CDS | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | + | chr3_2:26824872-26824891 | Msa0401310:intron | 25.0% |
| !! | TCAACAAGTTTGCAATATTT+TGG | - | chr3_2:26824973-26824992 | None:intergenic | 25.0% |
| ! | GAATAATATCTTCTGACTTA+CGG | - | chr3_2:26825164-26825183 | None:intergenic | 25.0% |
| ! | AATGAAATATTTCTTTCCGA+AGG | + | chr3_2:26825530-26825549 | Msa0401310:intron | 25.0% |
| ! | ATGACTGAAGTTATAAACTT+GGG | + | chr3_2:26825558-26825577 | Msa0401310:intron | 25.0% |
| TATACAAAGCAAGTGAATGA+GGG | + | chr3_2:26824651-26824670 | Msa0401310:CDS | 30.0% | |
| AAGAAGAGGAAAATTCTACA+GGG | + | chr3_2:26824688-26824707 | Msa0401310:CDS | 30.0% | |
| !!! | GGTGTGATTTTTTGTTATGA+TGG | + | chr3_2:26824837-26824856 | Msa0401310:intron | 30.0% |
| TCTCCTGTTAAAATTCCAAA+AGG | - | chr3_2:26824878-26824897 | None:intergenic | 30.0% | |
| ! | GTTTTGTCCTAAAATCGTTT+TGG | + | chr3_2:26825123-26825142 | Msa0401310:intron | 30.0% |
| CATTTGTTTGACAAGAACTT+TGG | - | chr3_2:26825232-26825251 | None:intergenic | 30.0% | |
| CTTATTAGCTCAGATATCAA+AGG | - | chr3_2:26825397-26825416 | None:intergenic | 30.0% | |
| GATGACTGAAGTTATAAACT+TGG | + | chr3_2:26825557-26825576 | Msa0401310:intron | 30.0% | |
| TATACAAAGCAAGTGAATGA+GGG | + | chr3_2:26824651-26824670 | Msa0401310:CDS | 30.0% | |
| AAGAAGAGGAAAATTCTACA+GGG | + | chr3_2:26824688-26824707 | Msa0401310:CDS | 30.0% | |
| !!! | GGTGTGATTTTTTGTTATGA+TGG | + | chr3_2:26824837-26824856 | Msa0401310:intron | 30.0% |
| TCTCCTGTTAAAATTCCAAA+AGG | - | chr3_2:26824878-26824897 | None:intergenic | 30.0% | |
| ! | GTTTTGTCCTAAAATCGTTT+TGG | + | chr3_2:26825123-26825142 | Msa0401310:intron | 30.0% |
| CATTTGTTTGACAAGAACTT+TGG | - | chr3_2:26825232-26825251 | None:intergenic | 30.0% | |
| CTTATTAGCTCAGATATCAA+AGG | - | chr3_2:26825397-26825416 | None:intergenic | 30.0% | |
| GATGACTGAAGTTATAAACT+TGG | + | chr3_2:26825557-26825576 | Msa0401310:intron | 30.0% | |
| CTATACAAAGCAAGTGAATG+AGG | + | chr3_2:26824650-26824669 | Msa0401310:CDS | 35.0% | |
| AGAAGAAGAACATCAAGAAG+AGG | + | chr3_2:26824674-26824693 | Msa0401310:CDS | 35.0% | |
| CAAGAAGAGGAAAATTCTAC+AGG | + | chr3_2:26824687-26824706 | Msa0401310:CDS | 35.0% | |
| AGAAGAGGAAAATTCTACAG+GGG | + | chr3_2:26824689-26824708 | Msa0401310:CDS | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | + | chr3_2:26824765-26824784 | Msa0401310:CDS | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | + | chr3_2:26824772-26824791 | Msa0401310:CDS | 35.0% |
| GAGAGCTATTATGACATGAA+GGG | + | chr3_2:26824894-26824913 | Msa0401310:intron | 35.0% | |
| ! | TCTTTGGCCAAAACGATTTT+AGG | - | chr3_2:26825133-26825152 | None:intergenic | 35.0% |
| GGGAAATTATTCTTTGTGCT+AGG | + | chr3_2:26825318-26825337 | Msa0401310:intron | 35.0% | |
| GAATGTTTAACAGTCTCTCA+GGG | - | chr3_2:26825489-26825508 | None:intergenic | 35.0% | |
| TGAATGTTTAACAGTCTCTC+AGG | - | chr3_2:26825490-26825509 | None:intergenic | 35.0% | |
| ACTTCAGTCATCTATACCTT+CGG | - | chr3_2:26825549-26825568 | None:intergenic | 35.0% | |
| CTATACAAAGCAAGTGAATG+AGG | + | chr3_2:26824650-26824669 | Msa0401310:CDS | 35.0% | |
| AGAAGAAGAACATCAAGAAG+AGG | + | chr3_2:26824674-26824693 | Msa0401310:CDS | 35.0% | |
| CAAGAAGAGGAAAATTCTAC+AGG | + | chr3_2:26824687-26824706 | Msa0401310:CDS | 35.0% | |
| AGAAGAGGAAAATTCTACAG+GGG | + | chr3_2:26824689-26824708 | Msa0401310:CDS | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | + | chr3_2:26824765-26824784 | Msa0401310:CDS | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | + | chr3_2:26824772-26824791 | Msa0401310:CDS | 35.0% |
| GAGAGCTATTATGACATGAA+GGG | + | chr3_2:26824894-26824913 | Msa0401310:intron | 35.0% | |
| ! | TCTTTGGCCAAAACGATTTT+AGG | - | chr3_2:26825133-26825152 | None:intergenic | 35.0% |
| GGGAAATTATTCTTTGTGCT+AGG | + | chr3_2:26825318-26825337 | Msa0401310:intron | 35.0% | |
| GAATGTTTAACAGTCTCTCA+GGG | - | chr3_2:26825489-26825508 | None:intergenic | 35.0% | |
| TGAATGTTTAACAGTCTCTC+AGG | - | chr3_2:26825490-26825509 | None:intergenic | 35.0% | |
| ACTTCAGTCATCTATACCTT+CGG | - | chr3_2:26825549-26825568 | None:intergenic | 35.0% | |
| CCAACTAGCTCAATTCTGTA+AGG | - | chr3_2:26824732-26824751 | None:intergenic | 40.0% | |
| CCTTACAGAATTGAGCTAGT+TGG | + | chr3_2:26824729-26824748 | Msa0401310:CDS | 40.0% | |
| GGAGAGCTATTATGACATGA+AGG | + | chr3_2:26824893-26824912 | Msa0401310:intron | 40.0% | |
| ! | GTTGCTCCAGTTTTTACCTT+TGG | - | chr3_2:26825036-26825055 | None:intergenic | 40.0% |
| !! | CGTTTTGGCCAAAGATAATC+AGG | + | chr3_2:26825138-26825157 | Msa0401310:intron | 40.0% |
| ACTTACGGCCTGATTATCTT+TGG | - | chr3_2:26825149-26825168 | None:intergenic | 40.0% | |
| CTCTATTGAATCTGCAGAAG+CGG | + | chr3_2:26825641-26825660 | Msa0401310:intron | 40.0% | |
| ! | TTGTAGCTCTGCTTCTGTTA+GGG | - | chr3_2:26825674-26825693 | None:intergenic | 40.0% |
| CCAACTAGCTCAATTCTGTA+AGG | - | chr3_2:26824732-26824751 | None:intergenic | 40.0% | |
| CCTTACAGAATTGAGCTAGT+TGG | + | chr3_2:26824729-26824748 | Msa0401310:CDS | 40.0% | |
| GGAGAGCTATTATGACATGA+AGG | + | chr3_2:26824893-26824912 | Msa0401310:intron | 40.0% | |
| ! | GTTGCTCCAGTTTTTACCTT+TGG | - | chr3_2:26825036-26825055 | None:intergenic | 40.0% |
| !! | CGTTTTGGCCAAAGATAATC+AGG | + | chr3_2:26825138-26825157 | Msa0401310:intron | 40.0% |
| ACTTACGGCCTGATTATCTT+TGG | - | chr3_2:26825149-26825168 | None:intergenic | 40.0% | |
| CTCTATTGAATCTGCAGAAG+CGG | + | chr3_2:26825641-26825660 | Msa0401310:intron | 40.0% | |
| ! | TTGTAGCTCTGCTTCTGTTA+GGG | - | chr3_2:26825674-26825693 | None:intergenic | 40.0% |
| ! | CAGAATTGAGCTAGTTGGTG+TGG | + | chr3_2:26824734-26824753 | Msa0401310:CDS | 45.0% |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | + | chr3_2:26824744-26824763 | Msa0401310:CDS | 45.0% |
| TTATGACATGAAGGGCAGTG+AGG | + | chr3_2:26824902-26824921 | Msa0401310:intron | 45.0% | |
| TATGACATGAAGGGCAGTGA+GGG | + | chr3_2:26824903-26824922 | Msa0401310:intron | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | + | chr3_2:26824980-26824999 | Msa0401310:CDS | 45.0% |
| CTCTATTGCACAGATGCTGT+TGG | + | chr3_2:26825003-26825022 | Msa0401310:CDS | 45.0% | |
| TATTGCACAGATGCTGTTGG+TGG | + | chr3_2:26825006-26825025 | Msa0401310:CDS | 45.0% | |
| GGTCCACCAAAGGTAAAAAC+TGG | + | chr3_2:26825027-26825046 | Msa0401310:intron | 45.0% | |
| ! | GCTCCAGTTTTTACCTTTGG+TGG | - | chr3_2:26825033-26825052 | None:intergenic | 45.0% |
| !! | AGTCTCTCAGGGTTGATACA+TGG | - | chr3_2:26825478-26825497 | None:intergenic | 45.0% |
| TATAAACTTGGGTCTGCAGC+AGG | + | chr3_2:26825569-26825588 | Msa0401310:intron | 45.0% | |
| CGCTTCTGCAGATTCAATAG+AGG | - | chr3_2:26825643-26825662 | None:intergenic | 45.0% | |
| ! | CTTGTAGCTCTGCTTCTGTT+AGG | - | chr3_2:26825675-26825694 | None:intergenic | 45.0% |
| AGTACTGCTTCAAGAAGTCG+AGG | + | chr3_2:26825693-26825712 | Msa0401310:CDS | 45.0% | |
| ! | CAGAATTGAGCTAGTTGGTG+TGG | + | chr3_2:26824734-26824753 | Msa0401310:CDS | 45.0% |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | + | chr3_2:26824744-26824763 | Msa0401310:CDS | 45.0% |
| TTATGACATGAAGGGCAGTG+AGG | + | chr3_2:26824902-26824921 | Msa0401310:intron | 45.0% | |
| TATGACATGAAGGGCAGTGA+GGG | + | chr3_2:26824903-26824922 | Msa0401310:intron | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | + | chr3_2:26824980-26824999 | Msa0401310:CDS | 45.0% |
| CTCTATTGCACAGATGCTGT+TGG | + | chr3_2:26825003-26825022 | Msa0401310:CDS | 45.0% | |
| TATTGCACAGATGCTGTTGG+TGG | + | chr3_2:26825006-26825025 | Msa0401310:CDS | 45.0% | |
| GGTCCACCAAAGGTAAAAAC+TGG | + | chr3_2:26825027-26825046 | Msa0401310:intron | 45.0% | |
| ! | GCTCCAGTTTTTACCTTTGG+TGG | - | chr3_2:26825033-26825052 | None:intergenic | 45.0% |
| !! | AGTCTCTCAGGGTTGATACA+TGG | - | chr3_2:26825478-26825497 | None:intergenic | 45.0% |
| TATAAACTTGGGTCTGCAGC+AGG | + | chr3_2:26825569-26825588 | Msa0401310:intron | 45.0% | |
| CGCTTCTGCAGATTCAATAG+AGG | - | chr3_2:26825643-26825662 | None:intergenic | 45.0% | |
| ! | CTTGTAGCTCTGCTTCTGTT+AGG | - | chr3_2:26825675-26825694 | None:intergenic | 45.0% |
| AGTACTGCTTCAAGAAGTCG+AGG | + | chr3_2:26825693-26825712 | Msa0401310:CDS | 45.0% | |
| !! | TGCTGTTGGTGGTCCACCAA+AGG | + | chr3_2:26825017-26825036 | Msa0401310:CDS | 55.0% |
| !! | TGCTGTTGGTGGTCCACCAA+AGG | + | chr3_2:26825017-26825036 | Msa0401310:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 26824609 | 26825732 | 26824609 | ID=Msa0401310;Name=Msa0401310 |
| chr3_2 | mRNA | 26824609 | 26825732 | 26824609 | ID=Msa0401310-mRNA-1;Parent=Msa0401310;Name=Msa0401310-mRNA-1;_AED=0.19;_eAED=0.53;_QI=0|0|0|0.66|1|1|3|0|127 |
| chr3_2 | exon | 26824609 | 26824793 | 26824609 | ID=Msa0401310-mRNA-1:exon:5586;Parent=Msa0401310-mRNA-1 |
| chr3_2 | exon | 26824915 | 26825038 | 26824915 | ID=Msa0401310-mRNA-1:exon:5587;Parent=Msa0401310-mRNA-1 |
| chr3_2 | exon | 26825658 | 26825732 | 26825658 | ID=Msa0401310-mRNA-1:exon:5588;Parent=Msa0401310-mRNA-1 |
| chr3_2 | CDS | 26824609 | 26824793 | 26824609 | ID=Msa0401310-mRNA-1:cds;Parent=Msa0401310-mRNA-1 |
| chr3_2 | CDS | 26824915 | 26825038 | 26824915 | ID=Msa0401310-mRNA-1:cds;Parent=Msa0401310-mRNA-1 |
| chr3_2 | CDS | 26825658 | 26825732 | 26825658 | ID=Msa0401310-mRNA-1:cds;Parent=Msa0401310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
